Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357830 | XP_003621148.2 | 92.784 | 388 | 21 | 1 | 1 | 381 | 1 | 388 | 0.0 | 750 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357830 | sp|P77931|PVADH_PSESP | 26.221 | 389 | 204 | 15 | 23 | 380 | 132 | 468 | 1.08e-27 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357830 | A0A396GXN5 | 92.784 | 388 | 21 | 1 | 1 | 381 | 32 | 419 | 0.0 | 749 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1048400 | Msa1357830 | 0.821138 | 4.736142e-53 | -8.615850e-47 |
| Msa1100310 | Msa1357830 | 0.801265 | 9.769855e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357830 | MtrunA17_Chr7g0216931 | 92.784 | 388 | 21 | 1 | 1 | 381 | 32 | 419 | 0.0 | 749 |
| Msa1357830 | MtrunA17_Chr7g0216961 | 68.436 | 358 | 101 | 4 | 35 | 381 | 32 | 388 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 75 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGATTGTTGGAATTTA+TGG | 0.146213 | tig0016207:-10846 | Msa1357830:CDS |
| TCTATACCAGATGCAGATTT+TGG | 0.178689 | tig0016207:-9571 | Msa1357830:CDS |
| CCTATCTTTCCATTGTTATC+TGG | 0.239304 | tig0016207:+9901 | None:intergenic |
| GATTTATAATTAATGCAAAT+TGG | 0.254384 | tig0016207:-10905 | Msa1357830:CDS |
| TTCAATCTTGGCCCTTGATT+TGG | 0.259780 | tig0016207:-9692 | Msa1357830:CDS |
| ATGTTAACTACACATGTAAA+TGG | 0.274129 | tig0016207:-9535 | Msa1357830:CDS |
| CTAAAACTGGTGCTATCTTA+TGG | 0.290820 | tig0016207:-9939 | Msa1357830:CDS |
| TATGGACCTGCTGTTGTTAT+TGG | 0.299331 | tig0016207:-10828 | Msa1357830:CDS |
| GCGACAATGGAACCCTTCTA+TGG | 0.323431 | tig0016207:-9453 | Msa1357830:CDS |
| ACACACTTGTCTTGTTCAAT+AGG | 0.329135 | tig0016207:+9736 | None:intergenic |
| TGGAACCCTTCTATGGTTTA+CGG | 0.341891 | tig0016207:-9446 | None:intergenic |
| GGAGAACTGGTGAGCTTGTT+TGG | 0.361738 | tig0016207:-10797 | Msa1357830:CDS |
| AAATTGATGGGTCACTTGTT+TGG | 0.368508 | tig0016207:-10968 | Msa1357830:CDS |
| ATCAAATGGTACAAACAATT+AGG | 0.373006 | tig0016207:-9658 | Msa1357830:CDS |
| ATATGCAGGAGCTGCCATTT+GGG | 0.376249 | tig0016207:-9875 | Msa1357830:CDS |
| TTCCACTTCAAACTTAGTTT+AGG | 0.378011 | tig0016207:+11086 | None:intergenic |
| CATATGCAGGAGCTGCCATT+TGG | 0.379166 | tig0016207:-9876 | Msa1357830:CDS |
| GCTTGTTTGGTTGACTCATT+TGG | 0.385559 | tig0016207:-10784 | Msa1357830:CDS |
| GTGGAGATTTGTTCAATAGA+AGG | 0.386676 | tig0016207:-11148 | Msa1357830:CDS |
| ATATTACCGTAAACCATAGA+AGG | 0.392513 | tig0016207:+9440 | None:intergenic |
| ACATGTGTAGTTAACATCAT+TGG | 0.398269 | tig0016207:+9541 | None:intergenic |
| AAGTGGATTTGCTTGGGCCT+TGG | 0.403348 | tig0016207:-9479 | Msa1357830:CDS |
| ATTGTACCATTGTATATTGT+TGG | 0.407977 | tig0016207:+11032 | None:intergenic |
| GCTGAAGATTTGTTGATTGT+TGG | 0.409450 | tig0016207:-10855 | Msa1357830:CDS |
| GTAAAACTTGATGCTAAAAC+TGG | 0.414947 | tig0016207:-9952 | Msa1357830:CDS |
| ATCAAGGGCCAAGATTGAAT+TGG | 0.424523 | tig0016207:+9696 | None:intergenic |
| TTGACAGGTTTAAATACTAC+TGG | 0.426633 | tig0016207:-10927 | Msa1357830:CDS |
| TTGGCCCTTGATTTGGAGAA+TGG | 0.427694 | tig0016207:-9685 | Msa1357830:CDS |
| TCAGAAAAGTGGATTTGCTT+GGG | 0.432417 | tig0016207:-9485 | Msa1357830:CDS |
| CAAAACTTGGAGAAATTGAC+AGG | 0.435683 | tig0016207:-10942 | Msa1357830:CDS |
| ACTTGTTTGGAAGCAAAACT+TGG | 0.436076 | tig0016207:-10955 | Msa1357830:CDS |
| TATTACCATTCTCCAAATCA+AGG | 0.440684 | tig0016207:+9680 | None:intergenic |
| GCCTCTCCAAAATCTGCATC+TGG | 0.444115 | tig0016207:+9565 | None:intergenic |
| TTCAGAAAAGTGGATTTGCT+TGG | 0.445473 | tig0016207:-9486 | Msa1357830:CDS |
| CCAGATAACAATGGAAAGAT+AGG | 0.447627 | tig0016207:-9901 | Msa1357830:CDS |
| CAATAGAAGGTATGCATACA+AGG | 0.450765 | tig0016207:-11135 | Msa1357830:CDS |
| TATGCAATTAAACAAATTGA+TGG | 0.453501 | tig0016207:-10981 | Msa1357830:CDS |
| GAAAATTGTTGCATATTTCG+TGG | 0.454212 | tig0016207:-9982 | Msa1357830:CDS |
| AAATCACTCCAATTCAATCT+TGG | 0.455297 | tig0016207:-9704 | Msa1357830:CDS |
| TGGAGAATGGTAATATCAAA+TGG | 0.489806 | tig0016207:-9672 | Msa1357830:CDS |
| GTTGTTGCTGTTCAGAAAAG+TGG | 0.490333 | tig0016207:-9496 | Msa1357830:CDS |
| ATTGGTCTTGAAAGGAGAAC+TGG | 0.494135 | tig0016207:-10810 | Msa1357830:CDS |
| AATTAATGCAAATTGGACAT+TGG | 0.503666 | tig0016207:-10898 | Msa1357830:CDS |
| AAACATGTCTATATTGCCAC+TGG | 0.525634 | tig0016207:-9823 | Msa1357830:CDS |
| AATTAGGAGGATATGATGTA+TGG | 0.528476 | tig0016207:-9642 | Msa1357830:CDS |
| CTGTTGTTATTGGTCTTGAA+AGG | 0.533524 | tig0016207:-10818 | Msa1357830:CDS |
| GGAAGGACTACTTCCCCAAA+TGG | 0.534598 | tig0016207:+9861 | None:intergenic |
| GGTTCCATTGTCGCGATCCA+AGG | 0.536353 | tig0016207:+9462 | None:intergenic |
| ACAAAAGATCAATATAGAAA+CGG | 0.544179 | tig0016207:-11111 | Msa1357830:CDS |
| GACATGGTAACAACTGCAGC+AGG | 0.551229 | tig0016207:+10753 | None:intergenic |
| AACAAATCTTCAGCCACAGT+TGG | 0.551886 | tig0016207:+10864 | None:intergenic |
| TACCTAAACTAAGTTTGAAG+TGG | 0.552036 | tig0016207:-11088 | Msa1357830:CDS |
| ATGCAATTAAACAAATTGAT+GGG | 0.565315 | tig0016207:-10980 | Msa1357830:CDS |
| TGGGCCTTGGATCGCGACAA+TGG | 0.567744 | tig0016207:-9466 | Msa1357830:CDS |
| ACTTCTAATTGTCCACCTCA+AGG | 0.569129 | tig0016207:-9595 | Msa1357830:CDS |
| TATGCAGGAGCTGCCATTTG+GGG | 0.569248 | tig0016207:-9874 | Msa1357830:CDS |
| TCAAGACCAATAACAACAGC+AGG | 0.576150 | tig0016207:+10822 | None:intergenic |
| GGAAAGATAGGAGCATATGC+AGG | 0.583839 | tig0016207:-9889 | Msa1357830:CDS |
| TATATGTTACCATTCCAGCT+TGG | 0.584829 | tig0016207:+11002 | None:intergenic |
| TTTCGATAAACATCAATGGA+AGG | 0.586957 | tig0016207:+9844 | None:intergenic |
| GGCTAGAGCAACTCCAACTG+TGG | 0.587661 | tig0016207:-10877 | Msa1357830:CDS |
| GTTAATTAGTGGATAAACCA+TGG | 0.591002 | tig0016207:-11170 | Msa1357830:intron |
| ATATATAGGAGTTACTATGT+TGG | 0.592038 | tig0016207:-10036 | Msa1357830:intron |
| GGAACATCTTCACTAGAAGA+AGG | 0.592079 | tig0016207:-10015 | Msa1357830:CDS |
| AAATGGTACAAACAATTAGG+AGG | 0.607059 | tig0016207:-9655 | Msa1357830:CDS |
| ATTACCATTCTCCAAATCAA+GGG | 0.618336 | tig0016207:+9681 | None:intergenic |
| TATTACCGTAAACCATAGAA+GGG | 0.638518 | tig0016207:+9441 | None:intergenic |
| TATTGAACAAATCTCCACCA+TGG | 0.646101 | tig0016207:+11153 | None:intergenic |
| TTTATGTTGCCAGATAACAA+TGG | 0.652568 | tig0016207:-9910 | Msa1357830:CDS |
| CACAAAACAAAAGTAAACAA+AGG | 0.657923 | tig0016207:+11335 | None:intergenic |
| GCAACACCAACAATATACAA+TGG | 0.660582 | tig0016207:-11038 | Msa1357830:CDS |
| TCTGGTATAGAACCTTGAGG+TGG | 0.699068 | tig0016207:+9583 | None:intergenic |
| AGCAGAATAGAGATTTCCAG+TGG | 0.699205 | tig0016207:+9807 | None:intergenic |
| GCATCTGGTATAGAACCTTG+AGG | 0.720540 | tig0016207:+9580 | None:intergenic |
| AATTAGTGGATAAACCATGG+TGG | 0.751900 | tig0016207:-11167 | Msa1357830:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATGAATATATATTTTTT+TGG | - | tig0016207:10627-10646 | Msa1357830:intron | 10.0% |
| !! | TAATTATACTTTGATATAAA+AGG | + | tig0016207:10760-10779 | None:intergenic | 10.0% |
| !!! | ATGATGAATATATATTTTTT+TGG | - | tig0016207:10627-10646 | Msa1357830:intron | 10.0% |
| !! | TAATTATACTTTGATATAAA+AGG | + | tig0016207:10760-10779 | None:intergenic | 10.0% |
| !! | AAAAAACAATATTGAAGTTA+AGG | + | tig0016207:9578-9597 | None:intergenic | 15.0% |
| !!! | ACTTCAATATTGTTTTTTTT+AGG | - | tig0016207:9580-9599 | Msa1357830:CDS | 15.0% |
| !!! | TTTTTTAGGTTAATTAATTC+TGG | - | tig0016207:9594-9613 | Msa1357830:CDS | 15.0% |
| !! | ATTAATTTCTTGTTAATTAG+TGG | - | tig0016207:9648-9667 | Msa1357830:CDS | 15.0% |
| !! | GATTTATAATTAATGCAAAT+TGG | - | tig0016207:9924-9943 | Msa1357830:CDS | 15.0% |
| !! | TTTACACAAATGATATTTAA+AGG | - | tig0016207:10457-10476 | Msa1357830:intron | 15.0% |
| !! | TTACACAAATGATATTTAAA+GGG | - | tig0016207:10458-10477 | Msa1357830:intron | 15.0% |
| !! | AAAAAACAATATTGAAGTTA+AGG | + | tig0016207:9578-9597 | None:intergenic | 15.0% |
| !!! | ACTTCAATATTGTTTTTTTT+AGG | - | tig0016207:9580-9599 | Msa1357830:CDS | 15.0% |
| !!! | TTTTTTAGGTTAATTAATTC+TGG | - | tig0016207:9594-9613 | Msa1357830:CDS | 15.0% |
| !! | ATTAATTTCTTGTTAATTAG+TGG | - | tig0016207:9648-9667 | Msa1357830:CDS | 15.0% |
| !! | GATTTATAATTAATGCAAAT+TGG | - | tig0016207:9924-9943 | Msa1357830:CDS | 15.0% |
| !! | TTTACACAAATGATATTTAA+AGG | - | tig0016207:10457-10476 | Msa1357830:intron | 15.0% |
| !! | TTACACAAATGATATTTAAA+GGG | - | tig0016207:10458-10477 | Msa1357830:intron | 15.0% |
| !!! | TTTATCATTCTGAATTTTTG+TGG | + | tig0016207:9468-9487 | None:intergenic | 20.0% |
| !! | ACAAAAGATCAATATAGAAA+CGG | - | tig0016207:9718-9737 | Msa1357830:CDS | 20.0% |
| !! | TATGCAATTAAACAAATTGA+TGG | - | tig0016207:9848-9867 | Msa1357830:CDS | 20.0% |
| !! | ATGCAATTAAACAAATTGAT+GGG | - | tig0016207:9849-9868 | Msa1357830:CDS | 20.0% |
| !!! | GAAAATACTACTATTTCTTT+AGG | - | tig0016207:10419-10438 | Msa1357830:intron | 20.0% |
| !!! | TTTGGAGTTTTTTTCAAAAA+CGG | + | tig0016207:10496-10515 | None:intergenic | 20.0% |
| !!! | CATCATAAGTATTTTCTTAT+TGG | + | tig0016207:10613-10632 | None:intergenic | 20.0% |
| !! | TCCTAAAAAAAATCAAGTTT+GGG | - | tig0016207:10704-10723 | Msa1357830:intron | 20.0% |
| !! | AAAAGGATTGAAAAGAAAAA+AGG | + | tig0016207:10743-10762 | None:intergenic | 20.0% |
| !! | ATACTAAACTCTCAATATAT+AGG | - | tig0016207:10779-10798 | Msa1357830:CDS | 20.0% |
| !!! | TTTATCATTCTGAATTTTTG+TGG | + | tig0016207:9468-9487 | None:intergenic | 20.0% |
| !! | ACAAAAGATCAATATAGAAA+CGG | - | tig0016207:9718-9737 | Msa1357830:CDS | 20.0% |
| !! | TATGCAATTAAACAAATTGA+TGG | - | tig0016207:9848-9867 | Msa1357830:CDS | 20.0% |
| !! | ATGCAATTAAACAAATTGAT+GGG | - | tig0016207:9849-9868 | Msa1357830:CDS | 20.0% |
| !!! | GAAAATACTACTATTTCTTT+AGG | - | tig0016207:10419-10438 | Msa1357830:intron | 20.0% |
| !!! | TTTGGAGTTTTTTTCAAAAA+CGG | + | tig0016207:10496-10515 | None:intergenic | 20.0% |
| !!! | CATCATAAGTATTTTCTTAT+TGG | + | tig0016207:10613-10632 | None:intergenic | 20.0% |
| !! | TCCTAAAAAAAATCAAGTTT+GGG | - | tig0016207:10704-10723 | Msa1357830:intron | 20.0% |
| !! | AAAAGGATTGAAAAGAAAAA+AGG | + | tig0016207:10743-10762 | None:intergenic | 20.0% |
| !! | ATACTAAACTCTCAATATAT+AGG | - | tig0016207:10779-10798 | Msa1357830:CDS | 20.0% |
| ! | CACAAAACAAAAGTAAACAA+AGG | + | tig0016207:9497-9516 | None:intergenic | 25.0% |
| ! | ATTGTACCATTGTATATTGT+TGG | + | tig0016207:9800-9819 | None:intergenic | 25.0% |
| ! | AATTAATGCAAATTGGACAT+TGG | - | tig0016207:9931-9950 | Msa1357830:CDS | 25.0% |
| !! | TTGTTGATTGTTGGAATTTA+TGG | - | tig0016207:9983-10002 | Msa1357830:CDS | 25.0% |
| ! | ATTATAATAAGTTCCAGACA+TGG | + | tig0016207:10095-10114 | None:intergenic | 25.0% |
| !! | ATGTCTGGAACTTATTATAA+TGG | - | tig0016207:10094-10113 | Msa1357830:intron | 25.0% |
| !! | TGTCTGGAACTTATTATAAT+GGG | - | tig0016207:10095-10114 | Msa1357830:intron | 25.0% |
| !!! | CTTTCCAATGTTTTAAGAAT+CGG | - | tig0016207:10161-10180 | Msa1357830:intron | 25.0% |
| ! | ATAATTAAGAACAAACCAAC+CGG | + | tig0016207:10234-10253 | None:intergenic | 25.0% |
| ! | ATCATAATCTAATTGAATCG+CGG | - | tig0016207:10254-10273 | Msa1357830:intron | 25.0% |
| ! | AAAAAACTCCAAATCTTGTT+TGG | - | tig0016207:10503-10522 | Msa1357830:intron | 25.0% |
| ! | GATGGTAAAAAATCTACATA+GGG | + | tig0016207:10530-10549 | None:intergenic | 25.0% |
| ! | TGATGGTAAAAAATCTACAT+AGG | + | tig0016207:10531-10550 | None:intergenic | 25.0% |
| ! | CTCCTAAAAAAAATCAAGTT+TGG | - | tig0016207:10703-10722 | Msa1357830:intron | 25.0% |
| !!! | TCCCAAACTTGATTTTTTTT+AGG | + | tig0016207:10708-10727 | None:intergenic | 25.0% |
| ! | ATATATAGGAGTTACTATGT+TGG | - | tig0016207:10793-10812 | Msa1357830:CDS | 25.0% |
| !! | AAATATGCAACAATTTTCGA+TGG | + | tig0016207:10845-10864 | None:intergenic | 25.0% |
| !! | ATGTTTTCGATAAACATCAA+TGG | + | tig0016207:10992-11011 | None:intergenic | 25.0% |
| ! | ATCAAATGGTACAAACAATT+AGG | - | tig0016207:11171-11190 | Msa1357830:intron | 25.0% |
| ! | ATGTTAACTACACATGTAAA+TGG | - | tig0016207:11294-11313 | Msa1357830:CDS | 25.0% |
| ! | CACAAAACAAAAGTAAACAA+AGG | + | tig0016207:9497-9516 | None:intergenic | 25.0% |
| ! | ATTGTACCATTGTATATTGT+TGG | + | tig0016207:9800-9819 | None:intergenic | 25.0% |
| ! | AATTAATGCAAATTGGACAT+TGG | - | tig0016207:9931-9950 | Msa1357830:CDS | 25.0% |
| !! | TTGTTGATTGTTGGAATTTA+TGG | - | tig0016207:9983-10002 | Msa1357830:CDS | 25.0% |
| ! | ATTATAATAAGTTCCAGACA+TGG | + | tig0016207:10095-10114 | None:intergenic | 25.0% |
| !! | ATGTCTGGAACTTATTATAA+TGG | - | tig0016207:10094-10113 | Msa1357830:intron | 25.0% |
| !! | TGTCTGGAACTTATTATAAT+GGG | - | tig0016207:10095-10114 | Msa1357830:intron | 25.0% |
| !!! | CTTTCCAATGTTTTAAGAAT+CGG | - | tig0016207:10161-10180 | Msa1357830:intron | 25.0% |
| ! | ATAATTAAGAACAAACCAAC+CGG | + | tig0016207:10234-10253 | None:intergenic | 25.0% |
| ! | ATCATAATCTAATTGAATCG+CGG | - | tig0016207:10254-10273 | Msa1357830:intron | 25.0% |
| ! | AAAAAACTCCAAATCTTGTT+TGG | - | tig0016207:10503-10522 | Msa1357830:intron | 25.0% |
| ! | GATGGTAAAAAATCTACATA+GGG | + | tig0016207:10530-10549 | None:intergenic | 25.0% |
| ! | TGATGGTAAAAAATCTACAT+AGG | + | tig0016207:10531-10550 | None:intergenic | 25.0% |
| ! | CTCCTAAAAAAAATCAAGTT+TGG | - | tig0016207:10703-10722 | Msa1357830:intron | 25.0% |
| !!! | TCCCAAACTTGATTTTTTTT+AGG | + | tig0016207:10708-10727 | None:intergenic | 25.0% |
| ! | ATATATAGGAGTTACTATGT+TGG | - | tig0016207:10793-10812 | Msa1357830:CDS | 25.0% |
| !! | AAATATGCAACAATTTTCGA+TGG | + | tig0016207:10845-10864 | None:intergenic | 25.0% |
| !! | ATGTTTTCGATAAACATCAA+TGG | + | tig0016207:10992-11011 | None:intergenic | 25.0% |
| ! | ATCAAATGGTACAAACAATT+AGG | - | tig0016207:11171-11190 | Msa1357830:intron | 25.0% |
| ! | ATGTTAACTACACATGTAAA+TGG | - | tig0016207:11294-11313 | Msa1357830:CDS | 25.0% |
| ! | GTTAATTAGTGGATAAACCA+TGG | - | tig0016207:9659-9678 | Msa1357830:CDS | 30.0% |
| TACCTAAACTAAGTTTGAAG+TGG | - | tig0016207:9741-9760 | Msa1357830:CDS | 30.0% | |
| TTCCACTTCAAACTTAGTTT+AGG | + | tig0016207:9746-9765 | None:intergenic | 30.0% | |
| !! | GTACAATTTATTTTCCAAGC+TGG | - | tig0016207:9813-9832 | Msa1357830:CDS | 30.0% |
| !! | ATTTATTTTCCAAGCTGGAA+TGG | - | tig0016207:9818-9837 | Msa1357830:CDS | 30.0% |
| TTGACAGGTTTAAATACTAC+TGG | - | tig0016207:9902-9921 | Msa1357830:CDS | 30.0% | |
| TGATCCGATTCTTAAAACAT+TGG | + | tig0016207:10168-10187 | None:intergenic | 30.0% | |
| CTGACTAAACTATGACTTAA+AGG | - | tig0016207:10366-10385 | Msa1357830:intron | 30.0% | |
| !!! | GTAGATTTTTTACCATCAAG+TGG | - | tig0016207:10533-10552 | Msa1357830:intron | 30.0% |
| !!! | TTCGCCTTATTTTTAGAGAT+CGG | - | tig0016207:10584-10603 | Msa1357830:intron | 30.0% |
| ! | GTTTCCGATCTCTAAAAATA+AGG | + | tig0016207:10591-10610 | None:intergenic | 30.0% |
| GAAAATTGTTGCATATTTCG+TGG | - | tig0016207:10847-10866 | Msa1357830:CDS | 30.0% | |
| GTAAAACTTGATGCTAAAAC+TGG | - | tig0016207:10877-10896 | Msa1357830:CDS | 30.0% | |
| TTTATGTTGCCAGATAACAA+TGG | - | tig0016207:10919-10938 | Msa1357830:CDS | 30.0% | |
| TTTCGATAAACATCAATGGA+AGG | + | tig0016207:10988-11007 | None:intergenic | 30.0% | |
| ! | ATTGAATTGGAGTGATTTTC+TGG | + | tig0016207:11123-11142 | None:intergenic | 30.0% |
| AAATCACTCCAATTCAATCT+TGG | - | tig0016207:11125-11144 | Msa1357830:CDS | 30.0% | |
| ATTACCATTCTCCAAATCAA+GGG | + | tig0016207:11151-11170 | None:intergenic | 30.0% | |
| TATTACCATTCTCCAAATCA+AGG | + | tig0016207:11152-11171 | None:intergenic | 30.0% | |
| TGGAGAATGGTAATATCAAA+TGG | - | tig0016207:11157-11176 | Msa1357830:CDS | 30.0% | |
| AAATGGTACAAACAATTAGG+AGG | - | tig0016207:11174-11193 | Msa1357830:intron | 30.0% | |
| AATTAGGAGGATATGATGTA+TGG | - | tig0016207:11187-11206 | Msa1357830:intron | 30.0% | |
| ACATGTGTAGTTAACATCAT+TGG | + | tig0016207:11291-11310 | None:intergenic | 30.0% | |
| ! | GTTAATTAGTGGATAAACCA+TGG | - | tig0016207:9659-9678 | Msa1357830:CDS | 30.0% |
| TACCTAAACTAAGTTTGAAG+TGG | - | tig0016207:9741-9760 | Msa1357830:CDS | 30.0% | |
| TTCCACTTCAAACTTAGTTT+AGG | + | tig0016207:9746-9765 | None:intergenic | 30.0% | |
| !! | GTACAATTTATTTTCCAAGC+TGG | - | tig0016207:9813-9832 | Msa1357830:CDS | 30.0% |
| !! | ATTTATTTTCCAAGCTGGAA+TGG | - | tig0016207:9818-9837 | Msa1357830:CDS | 30.0% |
| TTGACAGGTTTAAATACTAC+TGG | - | tig0016207:9902-9921 | Msa1357830:CDS | 30.0% | |
| TGATCCGATTCTTAAAACAT+TGG | + | tig0016207:10168-10187 | None:intergenic | 30.0% | |
| CTGACTAAACTATGACTTAA+AGG | - | tig0016207:10366-10385 | Msa1357830:intron | 30.0% | |
| !!! | GTAGATTTTTTACCATCAAG+TGG | - | tig0016207:10533-10552 | Msa1357830:intron | 30.0% |
| !!! | TTCGCCTTATTTTTAGAGAT+CGG | - | tig0016207:10584-10603 | Msa1357830:intron | 30.0% |
| ! | GTTTCCGATCTCTAAAAATA+AGG | + | tig0016207:10591-10610 | None:intergenic | 30.0% |
| GAAAATTGTTGCATATTTCG+TGG | - | tig0016207:10847-10866 | Msa1357830:CDS | 30.0% | |
| GTAAAACTTGATGCTAAAAC+TGG | - | tig0016207:10877-10896 | Msa1357830:CDS | 30.0% | |
| TTTATGTTGCCAGATAACAA+TGG | - | tig0016207:10919-10938 | Msa1357830:CDS | 30.0% | |
| TTTCGATAAACATCAATGGA+AGG | + | tig0016207:10988-11007 | None:intergenic | 30.0% | |
| ! | ATTGAATTGGAGTGATTTTC+TGG | + | tig0016207:11123-11142 | None:intergenic | 30.0% |
| AAATCACTCCAATTCAATCT+TGG | - | tig0016207:11125-11144 | Msa1357830:CDS | 30.0% | |
| ATTACCATTCTCCAAATCAA+GGG | + | tig0016207:11151-11170 | None:intergenic | 30.0% | |
| TATTACCATTCTCCAAATCA+AGG | + | tig0016207:11152-11171 | None:intergenic | 30.0% | |
| TGGAGAATGGTAATATCAAA+TGG | - | tig0016207:11157-11176 | Msa1357830:CDS | 30.0% | |
| AAATGGTACAAACAATTAGG+AGG | - | tig0016207:11174-11193 | Msa1357830:intron | 30.0% | |
| AATTAGGAGGATATGATGTA+TGG | - | tig0016207:11187-11206 | Msa1357830:intron | 30.0% | |
| ACATGTGTAGTTAACATCAT+TGG | + | tig0016207:11291-11310 | None:intergenic | 30.0% | |
| ! | TCTGAATTTTTGTGGTGACA+TGG | + | tig0016207:9460-9479 | None:intergenic | 35.0% |
| ! | AATTAGTGGATAAACCATGG+TGG | - | tig0016207:9662-9681 | Msa1357830:CDS | 35.0% |
| TATTGAACAAATCTCCACCA+TGG | + | tig0016207:9679-9698 | None:intergenic | 35.0% | |
| ! | GTGGAGATTTGTTCAATAGA+AGG | - | tig0016207:9681-9700 | Msa1357830:CDS | 35.0% |
| ! | CAATAGAAGGTATGCATACA+AGG | - | tig0016207:9694-9713 | Msa1357830:CDS | 35.0% |
| GCAACACCAACAATATACAA+TGG | - | tig0016207:9791-9810 | Msa1357830:CDS | 35.0% | |
| TATATGTTACCATTCCAGCT+TGG | + | tig0016207:9830-9849 | None:intergenic | 35.0% | |
| ! | AAATTGATGGGTCACTTGTT+TGG | - | tig0016207:9861-9880 | Msa1357830:CDS | 35.0% |
| ACTTGTTTGGAAGCAAAACT+TGG | - | tig0016207:9874-9893 | Msa1357830:CDS | 35.0% | |
| CAAAACTTGGAGAAATTGAC+AGG | - | tig0016207:9887-9906 | Msa1357830:CDS | 35.0% | |
| !! | GCTGAAGATTTGTTGATTGT+TGG | - | tig0016207:9974-9993 | Msa1357830:CDS | 35.0% |
| !! | CTGTTGTTATTGGTCTTGAA+AGG | - | tig0016207:10011-10030 | Msa1357830:CDS | 35.0% |
| CAACTGGTTGAACTAAGAAT+CGG | - | tig0016207:10200-10219 | Msa1357830:intron | 35.0% | |
| TAATCTAATTGAATCGCGGT+TGG | - | tig0016207:10258-10277 | Msa1357830:intron | 35.0% | |
| !! | CTAAAACTGGTGCTATCTTA+TGG | - | tig0016207:10890-10909 | Msa1357830:CDS | 35.0% |
| CCTATCTTTCCATTGTTATC+TGG | + | tig0016207:10931-10950 | None:intergenic | 35.0% | |
| CCAGATAACAATGGAAAGAT+AGG | - | tig0016207:10928-10947 | Msa1357830:CDS | 35.0% | |
| AAACATGTCTATATTGCCAC+TGG | - | tig0016207:11006-11025 | Msa1357830:CDS | 35.0% | |
| !!! | TGACATTCGAGTACGTTTTT+TGG | + | tig0016207:11048-11067 | None:intergenic | 35.0% |
| ! | ACACACTTGTCTTGTTCAAT+AGG | + | tig0016207:11096-11115 | None:intergenic | 35.0% |
| ! | TCTATACCAGATGCAGATTT+TGG | - | tig0016207:11258-11277 | Msa1357830:intron | 35.0% |
| ! | TTCAGAAAAGTGGATTTGCT+TGG | - | tig0016207:11343-11362 | Msa1357830:CDS | 35.0% |
| ! | TCAGAAAAGTGGATTTGCTT+GGG | - | tig0016207:11344-11363 | Msa1357830:CDS | 35.0% |
| ! | TCTGAATTTTTGTGGTGACA+TGG | + | tig0016207:9460-9479 | None:intergenic | 35.0% |
| ! | AATTAGTGGATAAACCATGG+TGG | - | tig0016207:9662-9681 | Msa1357830:CDS | 35.0% |
| TATTGAACAAATCTCCACCA+TGG | + | tig0016207:9679-9698 | None:intergenic | 35.0% | |
| ! | GTGGAGATTTGTTCAATAGA+AGG | - | tig0016207:9681-9700 | Msa1357830:CDS | 35.0% |
| ! | CAATAGAAGGTATGCATACA+AGG | - | tig0016207:9694-9713 | Msa1357830:CDS | 35.0% |
| GCAACACCAACAATATACAA+TGG | - | tig0016207:9791-9810 | Msa1357830:CDS | 35.0% | |
| TATATGTTACCATTCCAGCT+TGG | + | tig0016207:9830-9849 | None:intergenic | 35.0% | |
| ! | AAATTGATGGGTCACTTGTT+TGG | - | tig0016207:9861-9880 | Msa1357830:CDS | 35.0% |
| ACTTGTTTGGAAGCAAAACT+TGG | - | tig0016207:9874-9893 | Msa1357830:CDS | 35.0% | |
| CAAAACTTGGAGAAATTGAC+AGG | - | tig0016207:9887-9906 | Msa1357830:CDS | 35.0% | |
| !! | GCTGAAGATTTGTTGATTGT+TGG | - | tig0016207:9974-9993 | Msa1357830:CDS | 35.0% |
| !! | CTGTTGTTATTGGTCTTGAA+AGG | - | tig0016207:10011-10030 | Msa1357830:CDS | 35.0% |
| CAACTGGTTGAACTAAGAAT+CGG | - | tig0016207:10200-10219 | Msa1357830:intron | 35.0% | |
| TAATCTAATTGAATCGCGGT+TGG | - | tig0016207:10258-10277 | Msa1357830:intron | 35.0% | |
| !! | CTAAAACTGGTGCTATCTTA+TGG | - | tig0016207:10890-10909 | Msa1357830:CDS | 35.0% |
| CCTATCTTTCCATTGTTATC+TGG | + | tig0016207:10931-10950 | None:intergenic | 35.0% | |
| CCAGATAACAATGGAAAGAT+AGG | - | tig0016207:10928-10947 | Msa1357830:CDS | 35.0% | |
| AAACATGTCTATATTGCCAC+TGG | - | tig0016207:11006-11025 | Msa1357830:CDS | 35.0% | |
| !!! | TGACATTCGAGTACGTTTTT+TGG | + | tig0016207:11048-11067 | None:intergenic | 35.0% |
| ! | ACACACTTGTCTTGTTCAAT+AGG | + | tig0016207:11096-11115 | None:intergenic | 35.0% |
| ! | TCTATACCAGATGCAGATTT+TGG | - | tig0016207:11258-11277 | Msa1357830:intron | 35.0% |
| ! | TTCAGAAAAGTGGATTTGCT+TGG | - | tig0016207:11343-11362 | Msa1357830:CDS | 35.0% |
| ! | TCAGAAAAGTGGATTTGCTT+GGG | - | tig0016207:11344-11363 | Msa1357830:CDS | 35.0% |
| AACAAATCTTCAGCCACAGT+TGG | + | tig0016207:9968-9987 | None:intergenic | 40.0% | |
| TATGGACCTGCTGTTGTTAT+TGG | - | tig0016207:10001-10020 | Msa1357830:CDS | 40.0% | |
| TCAAGACCAATAACAACAGC+AGG | + | tig0016207:10010-10029 | None:intergenic | 40.0% | |
| !! | ATTGGTCTTGAAAGGAGAAC+TGG | - | tig0016207:10019-10038 | Msa1357830:CDS | 40.0% |
| ! | GCTTGTTTGGTTGACTCATT+TGG | - | tig0016207:10045-10064 | Msa1357830:intron | 40.0% |
| AAGAATCGGATCATATCAGC+TGG | - | tig0016207:10175-10194 | Msa1357830:intron | 40.0% | |
| ! | ATCATATCAGCTGGTTCAAC+TGG | - | tig0016207:10184-10203 | Msa1357830:intron | 40.0% |
| CACAAACGCTATTGAACTAG+AGG | + | tig0016207:10340-10359 | None:intergenic | 40.0% | |
| ! | CTCTAGTTCAATAGCGTTTG+TGG | - | tig0016207:10338-10357 | Msa1357830:intron | 40.0% |
| CATAGGGACCAAACAAGATT+TGG | + | tig0016207:10514-10533 | None:intergenic | 40.0% | |
| TCTAACCTCACCATCAAGTA+TGG | - | tig0016207:10677-10696 | Msa1357830:intron | 40.0% | |
| CTAACCTCACCATCAAGTAT+GGG | - | tig0016207:10678-10697 | Msa1357830:intron | 40.0% | |
| TAACCTCACCATCAAGTATG+GGG | - | tig0016207:10679-10698 | Msa1357830:intron | 40.0% | |
| GGAACATCTTCACTAGAAGA+AGG | - | tig0016207:10814-10833 | Msa1357830:CDS | 40.0% | |
| AGCAGAATAGAGATTTCCAG+TGG | + | tig0016207:11025-11044 | None:intergenic | 40.0% | |
| ATCAAGGGCCAAGATTGAAT+TGG | + | tig0016207:11136-11155 | None:intergenic | 40.0% | |
| TTCAATCTTGGCCCTTGATT+TGG | - | tig0016207:11137-11156 | Msa1357830:CDS | 40.0% | |
| ACTTCTAATTGTCCACCTCA+AGG | - | tig0016207:11234-11253 | Msa1357830:intron | 40.0% | |
| ! | GTTGTTGCTGTTCAGAAAAG+TGG | - | tig0016207:11333-11352 | Msa1357830:CDS | 40.0% |
| AACAAATCTTCAGCCACAGT+TGG | + | tig0016207:9968-9987 | None:intergenic | 40.0% | |
| TATGGACCTGCTGTTGTTAT+TGG | - | tig0016207:10001-10020 | Msa1357830:CDS | 40.0% | |
| TCAAGACCAATAACAACAGC+AGG | + | tig0016207:10010-10029 | None:intergenic | 40.0% | |
| !! | ATTGGTCTTGAAAGGAGAAC+TGG | - | tig0016207:10019-10038 | Msa1357830:CDS | 40.0% |
| ! | GCTTGTTTGGTTGACTCATT+TGG | - | tig0016207:10045-10064 | Msa1357830:intron | 40.0% |
| AAGAATCGGATCATATCAGC+TGG | - | tig0016207:10175-10194 | Msa1357830:intron | 40.0% | |
| ! | ATCATATCAGCTGGTTCAAC+TGG | - | tig0016207:10184-10203 | Msa1357830:intron | 40.0% |
| CACAAACGCTATTGAACTAG+AGG | + | tig0016207:10340-10359 | None:intergenic | 40.0% | |
| ! | CTCTAGTTCAATAGCGTTTG+TGG | - | tig0016207:10338-10357 | Msa1357830:intron | 40.0% |
| CATAGGGACCAAACAAGATT+TGG | + | tig0016207:10514-10533 | None:intergenic | 40.0% | |
| TCTAACCTCACCATCAAGTA+TGG | - | tig0016207:10677-10696 | Msa1357830:intron | 40.0% | |
| CTAACCTCACCATCAAGTAT+GGG | - | tig0016207:10678-10697 | Msa1357830:intron | 40.0% | |
| TAACCTCACCATCAAGTATG+GGG | - | tig0016207:10679-10698 | Msa1357830:intron | 40.0% | |
| GGAACATCTTCACTAGAAGA+AGG | - | tig0016207:10814-10833 | Msa1357830:CDS | 40.0% | |
| AGCAGAATAGAGATTTCCAG+TGG | + | tig0016207:11025-11044 | None:intergenic | 40.0% | |
| ATCAAGGGCCAAGATTGAAT+TGG | + | tig0016207:11136-11155 | None:intergenic | 40.0% | |
| TTCAATCTTGGCCCTTGATT+TGG | - | tig0016207:11137-11156 | Msa1357830:CDS | 40.0% | |
| ACTTCTAATTGTCCACCTCA+AGG | - | tig0016207:11234-11253 | Msa1357830:intron | 40.0% | |
| ! | GTTGTTGCTGTTCAGAAAAG+TGG | - | tig0016207:11333-11352 | Msa1357830:CDS | 40.0% |
| !! | GGTCTCGTCGATTTGATCTT+TGG | - | tig0016207:10387-10406 | Msa1357830:intron | 45.0% |
| GTTAATCACGAGCCACTTGA+TGG | + | tig0016207:10548-10567 | None:intergenic | 45.0% | |
| TTAGGAGTCCCCATACTTGA+TGG | + | tig0016207:10690-10709 | None:intergenic | 45.0% | |
| ! | GGAAAGATAGGAGCATATGC+AGG | - | tig0016207:10940-10959 | Msa1357830:CDS | 45.0% |
| ! | ATATGCAGGAGCTGCCATTT+GGG | - | tig0016207:10954-10973 | Msa1357830:CDS | 45.0% |
| !! | TTGGCCCTTGATTTGGAGAA+TGG | - | tig0016207:11144-11163 | Msa1357830:CDS | 45.0% |
| TCTGGTATAGAACCTTGAGG+TGG | + | tig0016207:11249-11268 | None:intergenic | 45.0% | |
| GCATCTGGTATAGAACCTTG+AGG | + | tig0016207:11252-11271 | None:intergenic | 45.0% | |
| !! | ACCAGATGCAGATTTTGGAG+AGG | - | tig0016207:11263-11282 | Msa1357830:intron | 45.0% |
| !! | GGTCTCGTCGATTTGATCTT+TGG | - | tig0016207:10387-10406 | Msa1357830:intron | 45.0% |
| GTTAATCACGAGCCACTTGA+TGG | + | tig0016207:10548-10567 | None:intergenic | 45.0% | |
| TTAGGAGTCCCCATACTTGA+TGG | + | tig0016207:10690-10709 | None:intergenic | 45.0% | |
| ! | GGAAAGATAGGAGCATATGC+AGG | - | tig0016207:10940-10959 | Msa1357830:CDS | 45.0% |
| ! | ATATGCAGGAGCTGCCATTT+GGG | - | tig0016207:10954-10973 | Msa1357830:CDS | 45.0% |
| !! | TTGGCCCTTGATTTGGAGAA+TGG | - | tig0016207:11144-11163 | Msa1357830:CDS | 45.0% |
| TCTGGTATAGAACCTTGAGG+TGG | + | tig0016207:11249-11268 | None:intergenic | 45.0% | |
| GCATCTGGTATAGAACCTTG+AGG | + | tig0016207:11252-11271 | None:intergenic | 45.0% | |
| !! | ACCAGATGCAGATTTTGGAG+AGG | - | tig0016207:11263-11282 | Msa1357830:intron | 45.0% |
| ! | GGAGAACTGGTGAGCTTGTT+TGG | - | tig0016207:10032-10051 | Msa1357830:intron | 50.0% |
| GACATGGTAACAACTGCAGC+AGG | + | tig0016207:10079-10098 | None:intergenic | 50.0% | |
| GCTGCAGTTGTTACCATGTC+TGG | - | tig0016207:10079-10098 | Msa1357830:intron | 50.0% | |
| CTAAGAATCGGCCAGTTCAC+CGG | - | tig0016207:10212-10231 | Msa1357830:intron | 50.0% | |
| GAACAAACCAACCGGTGAAC+TGG | + | tig0016207:10226-10245 | None:intergenic | 50.0% | |
| !! | AGTCCCCATACTTGATGGTG+AGG | + | tig0016207:10685-10704 | None:intergenic | 50.0% |
| CATATGCAGGAGCTGCCATT+TGG | - | tig0016207:10953-10972 | Msa1357830:CDS | 50.0% | |
| ! | TATGCAGGAGCTGCCATTTG+GGG | - | tig0016207:10955-10974 | Msa1357830:CDS | 50.0% |
| GGAAGGACTACTTCCCCAAA+TGG | + | tig0016207:10971-10990 | None:intergenic | 50.0% | |
| GCCTCTCCAAAATCTGCATC+TGG | + | tig0016207:11267-11286 | None:intergenic | 50.0% | |
| ! | AAGTGGATTTGCTTGGGCCT+TGG | - | tig0016207:11350-11369 | Msa1357830:CDS | 50.0% |
| GCGACAATGGAACCCTTCTA+TGG | - | tig0016207:11376-11395 | Msa1357830:CDS | 50.0% | |
| ! | GGAGAACTGGTGAGCTTGTT+TGG | - | tig0016207:10032-10051 | Msa1357830:intron | 50.0% |
| GACATGGTAACAACTGCAGC+AGG | + | tig0016207:10079-10098 | None:intergenic | 50.0% | |
| GCTGCAGTTGTTACCATGTC+TGG | - | tig0016207:10079-10098 | Msa1357830:intron | 50.0% | |
| CTAAGAATCGGCCAGTTCAC+CGG | - | tig0016207:10212-10231 | Msa1357830:intron | 50.0% | |
| GAACAAACCAACCGGTGAAC+TGG | + | tig0016207:10226-10245 | None:intergenic | 50.0% | |
| !! | AGTCCCCATACTTGATGGTG+AGG | + | tig0016207:10685-10704 | None:intergenic | 50.0% |
| CATATGCAGGAGCTGCCATT+TGG | - | tig0016207:10953-10972 | Msa1357830:CDS | 50.0% | |
| ! | TATGCAGGAGCTGCCATTTG+GGG | - | tig0016207:10955-10974 | Msa1357830:CDS | 50.0% |
| GGAAGGACTACTTCCCCAAA+TGG | + | tig0016207:10971-10990 | None:intergenic | 50.0% | |
| GCCTCTCCAAAATCTGCATC+TGG | + | tig0016207:11267-11286 | None:intergenic | 50.0% | |
| ! | AAGTGGATTTGCTTGGGCCT+TGG | - | tig0016207:11350-11369 | Msa1357830:CDS | 50.0% |
| GCGACAATGGAACCCTTCTA+TGG | - | tig0016207:11376-11395 | Msa1357830:CDS | 50.0% | |
| GGCTAGAGCAACTCCAACTG+TGG | - | tig0016207:9952-9971 | Msa1357830:CDS | 55.0% | |
| GGTTCCATTGTCGCGATCCA+AGG | + | tig0016207:11370-11389 | None:intergenic | 55.0% | |
| GGCTAGAGCAACTCCAACTG+TGG | - | tig0016207:9952-9971 | Msa1357830:CDS | 55.0% | |
| GGTTCCATTGTCGCGATCCA+AGG | + | tig0016207:11370-11389 | None:intergenic | 55.0% | |
| GAATCGGCCAGTTCACCGGT+TGG | - | tig0016207:10216-10235 | Msa1357830:intron | 60.0% | |
| TGGGCCTTGGATCGCGACAA+TGG | - | tig0016207:11363-11382 | Msa1357830:CDS | 60.0% | |
| GAATCGGCCAGTTCACCGGT+TGG | - | tig0016207:10216-10235 | Msa1357830:intron | 60.0% | |
| TGGGCCTTGGATCGCGACAA+TGG | - | tig0016207:11363-11382 | Msa1357830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016207 | gene | 9447 | 11404 | 9447 | ID=Msa1357830;Name=Msa1357830 |
| tig0016207 | mRNA | 9447 | 11404 | 9447 | ID=Msa1357830-mRNA-1;Parent=Msa1357830;Name=Msa1357830-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0|1|1|1|3|0|381 |
| tig0016207 | exon | 11294 | 11404 | 11294 | ID=Msa1357830-mRNA-1:exon:10525;Parent=Msa1357830-mRNA-1 |
| tig0016207 | exon | 10756 | 11183 | 10756 | ID=Msa1357830-mRNA-1:exon:10524;Parent=Msa1357830-mRNA-1 |
| tig0016207 | exon | 9447 | 10050 | 9447 | ID=Msa1357830-mRNA-1:exon:10523;Parent=Msa1357830-mRNA-1 |
| tig0016207 | CDS | 11294 | 11404 | 11294 | ID=Msa1357830-mRNA-1:cds;Parent=Msa1357830-mRNA-1 |
| tig0016207 | CDS | 10756 | 11183 | 10756 | ID=Msa1357830-mRNA-1:cds;Parent=Msa1357830-mRNA-1 |
| tig0016207 | CDS | 9447 | 10050 | 9447 | ID=Msa1357830-mRNA-1:cds;Parent=Msa1357830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
