Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100310 | RHN44214.1 | 96.636 | 535 | 18 | 0 | 1 | 535 | 36 | 570 | 0.0 | 1069 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100310 | sp|P77931|PVADH_PSESP | 27.941 | 544 | 281 | 18 | 19 | 514 | 132 | 612 | 1.85e-46 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100310 | A0A396GXN5 | 96.636 | 535 | 18 | 0 | 1 | 535 | 36 | 570 | 0.0 | 1069 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024650 | Msa1100310 | 0.804747 | 1.861747e-49 | -8.615850e-47 |
| Msa0072180 | Msa1100310 | 0.811322 | 7.417862e-51 | -8.615850e-47 |
| Msa0073110 | Msa1100310 | 0.817520 | 3.159848e-52 | -8.615850e-47 |
| Msa0095910 | Msa1100310 | 0.806544 | 7.814838e-50 | -8.615850e-47 |
| Msa0120450 | Msa1100310 | 0.815568 | 8.650144e-52 | -8.615850e-47 |
| Msa0628200 | Msa1100310 | 0.817684 | 2.901793e-52 | -8.615850e-47 |
| Msa0629160 | Msa1100310 | 0.808640 | 2.804756e-50 | -8.615850e-47 |
| Msa0634290 | Msa1100310 | 0.810391 | 1.180025e-50 | -8.615850e-47 |
| Msa0643230 | Msa1100310 | 0.820871 | 5.455213e-53 | -8.615850e-47 |
| Msa0645380 | Msa1100310 | 0.812181 | 4.823466e-51 | -8.615850e-47 |
| Msa0660650 | Msa1100310 | 0.806732 | 7.132072e-50 | -8.615850e-47 |
| Msa0661440 | Msa1100310 | 0.812511 | 4.085593e-51 | -8.615850e-47 |
| Msa0675630 | Msa1100310 | 0.814497 | 1.495042e-51 | -8.615850e-47 |
| Msa0682110 | Msa1100310 | 0.802316 | 5.944623e-49 | -8.615850e-47 |
| Msa0682160 | Msa1100310 | 0.803829 | 2.891391e-49 | -8.615850e-47 |
| Msa0698280 | Msa1100310 | 0.801706 | 7.935492e-49 | -8.615850e-47 |
| Msa0720810 | Msa1100310 | 0.810361 | 1.197605e-50 | -8.615850e-47 |
| Msa0758990 | Msa1100310 | 0.802831 | 4.654442e-49 | -8.615850e-47 |
| Msa0761950 | Msa1100310 | 0.810590 | 1.068752e-50 | -8.615850e-47 |
| Msa0795320 | Msa1100310 | 0.805401 | 1.359187e-49 | -8.615850e-47 |
| Msa0795910 | Msa1100310 | -0.800542 | 1.372259e-48 | -8.615850e-47 |
| Msa0798840 | Msa1100310 | 0.813191 | 2.899805e-51 | -8.615850e-47 |
| Msa0802600 | Msa1100310 | 0.802318 | 5.937466e-49 | -8.615850e-47 |
| Msa0803880 | Msa1100310 | 0.815447 | 9.201503e-52 | -8.615850e-47 |
| Msa0829250 | Msa1100310 | -0.800359 | 1.495945e-48 | -8.615850e-47 |
| Msa0838210 | Msa1100310 | 0.825893 | 3.655411e-54 | -8.615850e-47 |
| Msa0150000 | Msa1100310 | 0.807496 | 4.913234e-50 | -8.615850e-47 |
| Msa0186240 | Msa1100310 | 0.811226 | 7.781718e-51 | -8.615850e-47 |
| Msa0224870 | Msa1100310 | 0.824328 | 8.565957e-54 | -8.615850e-47 |
| Msa0369990 | Msa1100310 | 0.808538 | 2.949027e-50 | -8.615850e-47 |
| Msa0391270 | Msa1100310 | 0.821662 | 3.583307e-53 | -8.615850e-47 |
| Msa0405200 | Msa1100310 | 0.807258 | 5.518040e-50 | -8.615850e-47 |
| Msa0410560 | Msa1100310 | 0.809448 | 1.883140e-50 | -8.615850e-47 |
| Msa0414480 | Msa1100310 | 0.806948 | 6.418193e-50 | -8.615850e-47 |
| Msa0418230 | Msa1100310 | 0.800900 | 1.160258e-48 | -8.615850e-47 |
| Msa0427560 | Msa1100310 | 0.806573 | 7.702318e-50 | -8.615850e-47 |
| Msa0447160 | Msa1100310 | 0.814160 | 1.774519e-51 | -8.615850e-47 |
| Msa0449500 | Msa1100310 | 0.808440 | 3.093497e-50 | -8.615850e-47 |
| Msa0454160 | Msa1100310 | 0.803139 | 4.020276e-49 | -8.615850e-47 |
| Msa0454770 | Msa1100310 | 0.801110 | 1.050940e-48 | -8.615850e-47 |
| Msa0462460 | Msa1100310 | 0.803280 | 3.758768e-49 | -8.615850e-47 |
| Msa0464310 | Msa1100310 | 0.820260 | 7.533250e-53 | -8.615850e-47 |
| Msa0464620 | Msa1100310 | 0.810741 | 9.912799e-51 | -8.615850e-47 |
| Msa0478080 | Msa1100310 | 0.816968 | 4.206453e-52 | -8.615850e-47 |
| Msa0984520 | Msa1100310 | 0.817518 | 3.164303e-52 | -8.615850e-47 |
| Msa0987020 | Msa1100310 | 0.809950 | 1.468827e-50 | -8.615850e-47 |
| Msa0996980 | Msa1100310 | 0.815895 | 7.312688e-52 | -8.615850e-47 |
| Msa0998780 | Msa1100310 | 0.813815 | 2.114741e-51 | -8.615850e-47 |
| Msa1001120 | Msa1100310 | 0.809241 | 2.085611e-50 | -8.615850e-47 |
| Msa1006030 | Msa1100310 | 0.809431 | 1.899135e-50 | -8.615850e-47 |
| Msa1006220 | Msa1100310 | 0.817693 | 2.888178e-52 | -8.615850e-47 |
| Msa1024420 | Msa1100310 | 0.812100 | 5.023574e-51 | -8.615850e-47 |
| Msa1024480 | Msa1100310 | 0.807135 | 5.859271e-50 | -8.615850e-47 |
| Msa1030070 | Msa1100310 | 0.806167 | 9.380856e-50 | -8.615850e-47 |
| Msa1035050 | Msa1100310 | 0.830117 | 3.518618e-55 | -8.615850e-47 |
| Msa1041250 | Msa1100310 | 0.819425 | 1.169557e-52 | -8.615850e-47 |
| Msa1048350 | Msa1100310 | 0.805812 | 1.113912e-49 | -8.615850e-47 |
| Msa1048390 | Msa1100310 | 0.801943 | 7.091997e-49 | -8.615850e-47 |
| Msa1048400 | Msa1100310 | 0.862642 | 4.386088e-64 | -8.615850e-47 |
| Msa1049400 | Msa1100310 | 0.809394 | 1.934122e-50 | -8.615850e-47 |
| Msa1062060 | Msa1100310 | 0.829753 | 4.314649e-55 | -8.615850e-47 |
| Msa1069010 | Msa1100310 | 0.822686 | 2.073850e-53 | -8.615850e-47 |
| Msa1075090 | Msa1100310 | 0.828750 | 7.557364e-55 | -8.615850e-47 |
| Msa1082080 | Msa1100310 | 0.801881 | 7.302589e-49 | -8.615850e-47 |
| Msa1095590 | Msa1100310 | 0.801826 | 7.495212e-49 | -8.615850e-47 |
| Msa1100310 | Msa1100330 | 0.816325 | 5.861729e-52 | -8.615850e-47 |
| Msa1100310 | Msa1107220 | 0.810294 | 1.238271e-50 | -8.615850e-47 |
| Msa1100310 | Msa1108560 | 0.810166 | 1.319525e-50 | -8.615850e-47 |
| Msa1100310 | Msa1115980 | 0.816135 | 6.464353e-52 | -8.615850e-47 |
| Msa1100310 | Msa1116090 | 0.817286 | 3.567767e-52 | -8.615850e-47 |
| Msa1100310 | Msa1120750 | 0.802080 | 6.648442e-49 | -8.615850e-47 |
| Msa1100310 | Msa1132880 | -0.802213 | 6.241531e-49 | -8.615850e-47 |
| Msa1100310 | Msa1136630 | 0.806904 | 6.558069e-50 | -8.615850e-47 |
| Msa1100310 | Msa1136760 | 0.809787 | 1.592138e-50 | -8.615850e-47 |
| Msa1100310 | Msa1143250 | 0.810432 | 1.155825e-50 | -8.615850e-47 |
| Msa1100310 | Msa1150760 | 0.808863 | 2.512418e-50 | -8.615850e-47 |
| Msa1100310 | Msa1153690 | 0.804892 | 1.736675e-49 | -8.615850e-47 |
| Msa1100310 | Msa1155610 | 0.811718 | 6.086086e-51 | -8.615850e-47 |
| Msa1100310 | Msa1165670 | 0.810716 | 1.003536e-50 | -8.615850e-47 |
| Msa1100310 | Msa1174280 | 0.810962 | 8.880128e-51 | -8.615850e-47 |
| Msa1100310 | Msa1181090 | 0.808075 | 3.700829e-50 | -8.615850e-47 |
| Msa1100310 | Msa1185270 | 0.813280 | 2.772175e-51 | -8.615850e-47 |
| Msa1100310 | Msa1202110 | 0.822480 | 2.316723e-53 | -8.615850e-47 |
| Msa1100310 | Msa1205360 | 0.816164 | 6.368776e-52 | -8.615850e-47 |
| Msa1100310 | Msa1223960 | 0.814659 | 1.376501e-51 | -8.615850e-47 |
| Msa1100310 | Msa1223990 | 0.823194 | 1.579081e-53 | -8.615850e-47 |
| Msa1100310 | Msa1225850 | 0.806712 | 7.199344e-50 | -8.615850e-47 |
| Msa1100310 | Msa1239210 | 0.817071 | 3.988748e-52 | -8.615850e-47 |
| Msa1100310 | Msa1250280 | 0.810636 | 1.044432e-50 | -8.615850e-47 |
| Msa1100310 | Msa1254870 | 0.820892 | 5.393840e-53 | -8.615850e-47 |
| Msa1100310 | Msa1263110 | 0.828384 | 9.265051e-55 | -8.615850e-47 |
| Msa1100310 | Msa1263120 | 0.815667 | 8.220229e-52 | -8.615850e-47 |
| Msa1100310 | Msa1276580 | 0.804635 | 1.965124e-49 | -8.615850e-47 |
| Msa1100310 | Msa1284020 | 0.814619 | 1.404868e-51 | -8.615850e-47 |
| Msa1100310 | Msa1297280 | 0.815781 | 7.751499e-52 | -8.615850e-47 |
| Msa1100310 | Msa1319010 | 0.823894 | 1.083345e-53 | -8.615850e-47 |
| Msa1100310 | Msa1321970 | 0.803511 | 3.367405e-49 | -8.615850e-47 |
| Msa1100310 | Msa1322500 | 0.822912 | 1.837595e-53 | -8.615850e-47 |
| Msa1100310 | Msa1328430 | 0.821108 | 4.810052e-53 | -8.615850e-47 |
| Msa1100310 | Msa1340440 | 0.811857 | 5.675985e-51 | -8.615850e-47 |
| Msa1100310 | Msa1355340 | 0.805647 | 1.206850e-49 | -8.615850e-47 |
| Msa1100310 | Msa1357830 | 0.801265 | 9.769855e-49 | -8.615850e-47 |
| Msa1100310 | Msa1366480 | 0.814681 | 1.361109e-51 | -8.615850e-47 |
| Msa1100310 | Msa1384130 | 0.804743 | 1.865384e-49 | -8.615850e-47 |
| Msa1100310 | Msa1384990 | 0.819113 | 1.377592e-52 | -8.615850e-47 |
| Msa1100310 | Msa1398120 | 0.800079 | 1.705281e-48 | -8.615850e-47 |
| Msa1100310 | Msa1398140 | 0.818233 | 2.181150e-52 | -8.615850e-47 |
| Msa1100310 | Msa1455200 | 0.801492 | 8.776788e-49 | -8.615850e-47 |
| Msa0242830 | Msa1100310 | 0.828874 | 7.053240e-55 | -8.615850e-47 |
| Msa0248320 | Msa1100310 | 0.815767 | 7.809420e-52 | -8.615850e-47 |
| Msa0287630 | Msa1100310 | 0.811628 | 6.365662e-51 | -8.615850e-47 |
| Msa0298000 | Msa1100310 | 0.807690 | 4.469706e-50 | -8.615850e-47 |
| Msa0303900 | Msa1100310 | 0.825212 | 5.300475e-54 | -8.615850e-47 |
| Msa0333770 | Msa1100310 | 0.840307 | 9.409384e-58 | -8.615850e-47 |
| Msa0345050 | Msa1100310 | 0.800128 | 1.666889e-48 | -8.615850e-47 |
| Msa0354600 | Msa1100310 | 0.822732 | 2.023761e-53 | -8.615850e-47 |
| Msa0356240 | Msa1100310 | 0.810636 | 1.044547e-50 | -8.615850e-47 |
| Msa0490060 | Msa1100310 | 0.829305 | 5.546249e-55 | -8.615850e-47 |
| Msa0490100 | Msa1100310 | 0.802482 | 5.493588e-49 | -8.615850e-47 |
| Msa0493870 | Msa1100310 | 0.801116 | 1.047742e-48 | -8.615850e-47 |
| Msa0497680 | Msa1100310 | 0.802436 | 5.616741e-49 | -8.615850e-47 |
| Msa0501080 | Msa1100310 | 0.820318 | 7.306719e-53 | -8.615850e-47 |
| Msa0510870 | Msa1100310 | 0.806167 | 9.381302e-50 | -8.615850e-47 |
| Msa0522170 | Msa1100310 | 0.814203 | 1.735891e-51 | -8.615850e-47 |
| Msa0531050 | Msa1100310 | 0.819734 | 9.939020e-53 | -8.615850e-47 |
| Msa0538440 | Msa1100310 | 0.816577 | 5.148297e-52 | -8.615850e-47 |
| Msa0538530 | Msa1100310 | 0.800007 | 1.763646e-48 | -8.615850e-47 |
| Msa0540640 | Msa1100310 | 0.818997 | 1.463139e-52 | -8.615850e-47 |
| Msa0545680 | Msa1100310 | 0.805680 | 1.187790e-49 | -8.615850e-47 |
| Msa0548790 | Msa1100310 | 0.829057 | 6.367943e-55 | -8.615850e-47 |
| Msa0565180 | Msa1100310 | 0.806580 | 7.678574e-50 | -8.615850e-47 |
| Msa0567330 | Msa1100310 | 0.804422 | 2.176769e-49 | -8.615850e-47 |
| Msa0580410 | Msa1100310 | -0.800436 | 1.442433e-48 | -8.615850e-47 |
| Msa0587730 | Msa1100310 | 0.801881 | 7.303902e-49 | -8.615850e-47 |
| Msa0594630 | Msa1100310 | 0.820248 | 7.581387e-53 | -8.615850e-47 |
| Msa0873880 | Msa1100310 | 0.824797 | 6.644422e-54 | -8.615850e-47 |
| Msa0873910 | Msa1100310 | 0.816901 | 4.354654e-52 | -8.615850e-47 |
| Msa0873940 | Msa1100310 | 0.840944 | 6.407961e-58 | -8.615850e-47 |
| Msa0882780 | Msa1100310 | 0.819677 | 1.024579e-52 | -8.615850e-47 |
| Msa0893220 | Msa1100310 | 0.854356 | 1.299808e-61 | -8.615850e-47 |
| Msa0896920 | Msa1100310 | 0.844566 | 6.981783e-59 | -8.615850e-47 |
| Msa0896950 | Msa1100310 | 0.822131 | 2.790577e-53 | -8.615850e-47 |
| Msa0898970 | Msa1100310 | 0.819499 | 1.124913e-52 | -8.615850e-47 |
| Msa0906660 | Msa1100310 | 0.811967 | 5.371207e-51 | -8.615850e-47 |
| Msa0906680 | Msa1100310 | 0.826276 | 2.965346e-54 | -8.615850e-47 |
| Msa0910170 | Msa1100310 | 0.814166 | 1.769458e-51 | -8.615850e-47 |
| Msa0925940 | Msa1100310 | 0.800084 | 1.701564e-48 | -8.615850e-47 |
| Msa0927930 | Msa1100310 | 0.825110 | 5.603312e-54 | -8.615850e-47 |
| Msa0946010 | Msa1100310 | 0.807805 | 4.224658e-50 | -8.615850e-47 |
| Msa0964510 | Msa1100310 | 0.839795 | 1.279649e-57 | -8.615850e-47 |
| Msa0975950 | Msa1100310 | 0.835250 | 1.872248e-56 | -8.615850e-47 |
| Msa0975960 | Msa1100310 | 0.814190 | 1.747728e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100310 | MtrunA17_Chr7g0216931 | 96.636 | 535 | 18 | 0 | 1 | 535 | 36 | 570 | 0.0 | 1069 |
| Msa1100310 | MtrunA17_Chr7g0216961 | 67.664 | 535 | 163 | 6 | 6 | 535 | 10 | 539 | 0.0 | 710 |
| Msa1100310 | MtrunA17_Chr7g0216921 | 77.477 | 111 | 23 | 2 | 425 | 535 | 1 | 109 | 6.97e-52 | 172 |
| Msa1100310 | MtrunA17_Chr7g0216981 | 58.108 | 74 | 31 | 0 | 435 | 508 | 1 | 74 | 2.52e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 126 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGATTGTTGGAATTTA+TGG | 0.146213 | 7_3:-29820509 | Msa1100310:CDS |
| TCTATACCAGATGCAGATTT+TGG | 0.178689 | 7_3:-29819263 | Msa1100310:CDS |
| GGCATCTGAATTTGCAATAT+TGG | 0.192813 | 7_3:+29818087 | None:intergenic |
| GAAACTGGAGCTAGTGTTTA+TGG | 0.194173 | 7_3:-29817836 | Msa1100310:CDS |
| CTCAAACCGGCGACATCTTA+TGG | 0.220755 | 7_3:-29819631 | Msa1100310:CDS |
| GGACACATTTATGCAATTAA+TGG | 0.223125 | 7_3:-29817887 | Msa1100310:CDS |
| ATGTCTGGAACTTATTATAA+TGG | 0.252608 | 7_3:-29820398 | Msa1100310:CDS |
| GATTTATAATTAATGCAAAT+TGG | 0.254384 | 7_3:-29820568 | Msa1100310:CDS |
| TTCAATCTTGGCCCTTGATT+TGG | 0.259780 | 7_3:-29819384 | Msa1100310:CDS |
| ATGTTAACTACACATGTAAA+TGG | 0.274129 | 7_3:-29819227 | Msa1100310:CDS |
| ACTTCATTTGCCACACTAAC+AGG | 0.279058 | 7_3:+29817938 | None:intergenic |
| GATGTTGTATTCATATTTGA+TGG | 0.296749 | 7_3:+29818046 | None:intergenic |
| TATGGACCTGCTGTTGTTAT+TGG | 0.299331 | 7_3:-29820491 | Msa1100310:CDS |
| TGGTAAAAGTTTGAAAGTTT+TGG | 0.311234 | 7_3:+29818066 | None:intergenic |
| GCGACAATGGAACCCTTCTA+TGG | 0.323431 | 7_3:-29819145 | Msa1100310:CDS |
| TGGAACCCTTCTATGGTTTA+CGG | 0.341891 | 7_3:-29819138 | Msa1100310:intron |
| TTGACAGGTTTAAATACAAC+TGG | 0.353115 | 7_3:-29820590 | Msa1100310:CDS |
| GCAGGGCCTGGTGGACTAGC+TGG | 0.356768 | 7_3:-29818154 | Msa1100310:CDS |
| GTTGGATCCACAGATAGATT+TGG | 0.356937 | 7_3:-29817908 | Msa1100310:CDS |
| TATGCAATTAATGGAAGAAA+TGG | 0.360213 | 7_3:-29817878 | Msa1100310:CDS |
| GGAGAACTGGTGAGCTTGTT+TGG | 0.361738 | 7_3:-29820460 | Msa1100310:CDS |
| ATATGCTGGAGCTGCCATTT+GGG | 0.362982 | 7_3:-29819567 | Msa1100310:CDS |
| ATCAAATGGTACAAACAATT+AGG | 0.373006 | 7_3:-29819350 | Msa1100310:CDS |
| TTCCACTTCAAACTTAGTTT+AGG | 0.378011 | 7_3:+29820749 | None:intergenic |
| CATATGCTGGAGCTGCCATT+TGG | 0.379478 | 7_3:-29819568 | Msa1100310:CDS |
| TGTCTGGAACTTATTATAAT+GGG | 0.380311 | 7_3:-29820397 | Msa1100310:intron |
| GCTTGTTTGGTTGACTCATT+TGG | 0.385559 | 7_3:-29820447 | Msa1100310:CDS |
| GTGGAGATTTGTTCAATAGA+AGG | 0.386676 | 7_3:-29820811 | Msa1100310:CDS |
| ATATTACCGTAAACCATAGA+AGG | 0.392513 | 7_3:+29819132 | None:intergenic |
| ATCTGGAGGGTGGGTGGCAA+TGG | 0.396972 | 7_3:-29818026 | Msa1100310:CDS |
| CCTATCTTTCCGTTGTTATC+CGG | 0.398080 | 7_3:+29819593 | None:intergenic |
| ACATGTGTAGTTAACATCAT+TGG | 0.398269 | 7_3:+29819233 | None:intergenic |
| GCAGCAGTTGTTACCATGTC+TGG | 0.399583 | 7_3:-29820413 | Msa1100310:CDS |
| ATGGAAAACCTATATGTTAC+CGG | 0.400197 | 7_3:-29819612 | Msa1100310:CDS |
| TCAAATATGAATACAACATC+TGG | 0.400754 | 7_3:-29818043 | Msa1100310:CDS |
| AAGTGGATTTGCTTGGGCCT+TGG | 0.403348 | 7_3:-29819171 | Msa1100310:CDS |
| ATTGTACCATTGTATATTGT+TGG | 0.407977 | 7_3:+29820695 | None:intergenic |
| GCTGAAGATTTGTTGATTGT+TGG | 0.409450 | 7_3:-29820518 | Msa1100310:CDS |
| GGATTCTATTCTAACTATAC+TGG | 0.411807 | 7_3:-29817755 | Msa1100310:CDS |
| AAACTGGAGCTAGTGTTTAT+GGG | 0.412511 | 7_3:-29817835 | Msa1100310:CDS |
| CTAGCTGGAGGTGGAACATT+TGG | 0.415102 | 7_3:-29818139 | Msa1100310:CDS |
| ATCAAGGGCCAAGATTGAAT+TGG | 0.424523 | 7_3:+29819388 | None:intergenic |
| TTGGCCCTTGATTTGGAGAA+TGG | 0.427694 | 7_3:-29819377 | Msa1100310:CDS |
| TCAGAAAAGTGGATTTGCTT+GGG | 0.432417 | 7_3:-29819177 | Msa1100310:CDS |
| TATTACCATTCTCCAAATCA+AGG | 0.440684 | 7_3:+29819372 | None:intergenic |
| GCCTCTCCAAAATCTGCATC+TGG | 0.444115 | 7_3:+29819257 | None:intergenic |
| GTTGTTATCCGGTAACATAT+AGG | 0.444680 | 7_3:+29819604 | None:intergenic |
| TTCAGAAAAGTGGATTTGCT+TGG | 0.445473 | 7_3:-29819178 | Msa1100310:CDS |
| GAAGATTGTTGCATATTTCG+TGG | 0.448179 | 7_3:-29819674 | Msa1100310:CDS |
| CAATAGAAGGTATGCATACA+AGG | 0.450765 | 7_3:-29820798 | Msa1100310:CDS |
| CTCAAAATATTACAGGAAGC+AGG | 0.450923 | 7_3:-29818172 | Msa1100310:intron |
| TATGCAATTAAACAACTTGA+TGG | 0.452061 | 7_3:-29820644 | Msa1100310:CDS |
| CAAAACTTGAAGAAATTGAC+AGG | 0.454069 | 7_3:-29820605 | Msa1100310:CDS |
| AAATCACTCCAATTCAATCT+TGG | 0.455297 | 7_3:-29819396 | Msa1100310:CDS |
| AACTTGATGGGTCACTTGTA+TGG | 0.464085 | 7_3:-29820631 | Msa1100310:CDS |
| ATGAAATCTTTAGACACAAA+AGG | 0.471080 | 7_3:+29817715 | None:intergenic |
| GGTATAAATTCTTTGTTCAT+CGG | 0.472260 | 7_3:+29818108 | None:intergenic |
| GTCAAACTTGATGCTCAAAC+CGG | 0.473047 | 7_3:-29819644 | Msa1100310:CDS |
| CCGGATAACAACGGAAAGAT+AGG | 0.475618 | 7_3:-29819593 | Msa1100310:CDS |
| ACACACTTGTCTTGTTCAGC+AGG | 0.479801 | 7_3:+29819428 | None:intergenic |
| CATGGATATAATGTTTCTCT+AGG | 0.482629 | 7_3:-29817776 | Msa1100310:CDS |
| CTATGTTGGAACATCTTCAC+TGG | 0.489153 | 7_3:-29819714 | Msa1100310:CDS |
| TGGAGAATGGTAATATCAAA+TGG | 0.489806 | 7_3:-29819364 | Msa1100310:CDS |
| GTTGTTGCTGTTCAGAAAAG+TGG | 0.490333 | 7_3:-29819188 | Msa1100310:CDS |
| CTAGCAGTACTATTAATGCT+AGG | 0.491777 | 7_3:+29817965 | None:intergenic |
| CCTGGTGGACTAGCTGGAGG+TGG | 0.492982 | 7_3:-29818148 | Msa1100310:CDS |
| ATTGGTCTTGAAAGGAGAAC+TGG | 0.494135 | 7_3:-29820473 | Msa1100310:CDS |
| CCACCTCCAGCTAGTCCACC+AGG | 0.496549 | 7_3:+29818148 | None:intergenic |
| AATTAATGCAAATTGGACAT+TGG | 0.503666 | 7_3:-29820561 | Msa1100310:CDS |
| GGGCCTGGTGGACTAGCTGG+AGG | 0.513516 | 7_3:-29818151 | Msa1100310:CDS |
| AAACATGTCTATATTGCCAC+TGG | 0.525634 | 7_3:-29819515 | Msa1100310:CDS |
| AATTAGGAGGATATGATGTA+TGG | 0.528476 | 7_3:-29819334 | Msa1100310:CDS |
| TAGTAATGGATGTGTTTATG+TGG | 0.532402 | 7_3:-29817801 | Msa1100310:CDS |
| CTGTTGTTATTGGTCTTGAA+AGG | 0.533524 | 7_3:-29820481 | Msa1100310:CDS |
| ATATTACAGGAAGCAGGGCC+TGG | 0.533669 | 7_3:-29818166 | Msa1100310:intron |
| GGGAGGACTACTTCCCCAAA+TGG | 0.534598 | 7_3:+29819553 | None:intergenic |
| GGTTCCATTGTCGCGATCCA+AGG | 0.536353 | 7_3:+29819154 | None:intergenic |
| TAGCAGTACTATTAATGCTA+GGG | 0.543763 | 7_3:+29817966 | None:intergenic |
| ACAAAAGATCAATATAGAAA+CGG | 0.544179 | 7_3:-29820774 | Msa1100310:CDS |
| GACATGGTAACAACTGCTGC+AGG | 0.544790 | 7_3:+29820416 | None:intergenic |
| AACAAATCTTCAGCCACAGT+TGG | 0.551886 | 7_3:+29820527 | None:intergenic |
| TACCTAAACTAAGTTTGAAG+TGG | 0.552036 | 7_3:-29820751 | Msa1100310:CDS |
| TATGCTGGAGCTGCCATTTG+GGG | 0.558718 | 7_3:-29819566 | Msa1100310:CDS |
| GGAACATCTTCACTGGAAGA+AGG | 0.566675 | 7_3:-29819707 | Msa1100310:CDS |
| GGAAAGATAGGAGCATATGC+TGG | 0.567341 | 7_3:-29819581 | Msa1100310:CDS |
| ATGCAATTAAACAACTTGAT+GGG | 0.567627 | 7_3:-29820643 | Msa1100310:CDS |
| TGGGCCTTGGATCGCGACAA+TGG | 0.567744 | 7_3:-29819158 | Msa1100310:CDS |
| TGCTAGTGGCCCTGTTAGTG+TGG | 0.568976 | 7_3:-29817948 | Msa1100310:CDS |
| ACTTCTAATTGTCCACCTCA+AGG | 0.569129 | 7_3:-29819287 | Msa1100310:CDS |
| GGATGTGTTTATGTGGGTCA+TGG | 0.572048 | 7_3:-29817794 | Msa1100310:CDS |
| TCAAGACCAATAACAACAGC+AGG | 0.576150 | 7_3:+29820485 | None:intergenic |
| AACTGGAGCTAGTGTTTATG+GGG | 0.580406 | 7_3:-29817834 | Msa1100310:CDS |
| GAATACAACATCTGGAGGGT+GGG | 0.581723 | 7_3:-29818035 | Msa1100310:CDS |
| TTCTATTCTAACTATACTGG+TGG | 0.583777 | 7_3:-29817752 | Msa1100310:CDS |
| TATATGTTACCATTCCAGCT+TGG | 0.584829 | 7_3:+29820665 | None:intergenic |
| TCAAAATATTACAGGAAGCA+GGG | 0.585370 | 7_3:-29818171 | Msa1100310:intron |
| GGCTAGAGCAACTCCAACTG+TGG | 0.587661 | 7_3:-29820540 | Msa1100310:CDS |
| AATATGAATACAACATCTGG+AGG | 0.588801 | 7_3:-29818040 | Msa1100310:CDS |
| ATATATAGGAGTTACTATGT+TGG | 0.592038 | 7_3:-29819728 | Msa1100310:intron |
| GACACAAAAGGCAAAGAGTG+AGG | 0.592209 | 7_3:+29817727 | None:intergenic |
| TGAATACAACATCTGGAGGG+TGG | 0.592918 | 7_3:-29818036 | Msa1100310:CDS |
| TACAACATCTGGAGGGTGGG+TGG | 0.593593 | 7_3:-29818032 | Msa1100310:CDS |
| AAATATGCAACAATCTTCGA+TGG | 0.598146 | 7_3:+29819679 | None:intergenic |
| AGTAATGGATGTGTTTATGT+GGG | 0.600881 | 7_3:-29817800 | Msa1100310:CDS |
| CTTCATTTGCCACACTAACA+GGG | 0.602466 | 7_3:+29817939 | None:intergenic |
| AAATGGTACAAACAATTAGG+AGG | 0.607059 | 7_3:-29819347 | Msa1100310:CDS |
| ATTACCATTCTCCAAATCAA+GGG | 0.618336 | 7_3:+29819373 | None:intergenic |
| TTTGAGCATCAAGTTTGACA+AGG | 0.631568 | 7_3:+29819648 | None:intergenic |
| TTACAGGAAGCAGGGCCTGG+TGG | 0.633564 | 7_3:-29818163 | Msa1100310:intron |
| TATTACCGTAAACCATAGAA+GGG | 0.638518 | 7_3:+29819133 | None:intergenic |
| AATGTGTCCAAATCTATCTG+TGG | 0.644326 | 7_3:+29817901 | None:intergenic |
| TATTGAACAAATCTCCACCA+TGG | 0.646101 | 7_3:+29820816 | None:intergenic |
| CACAAAACAAAAGTAAACAA+AGG | 0.657923 | 7_3:+29820980 | None:intergenic |
| GTGGCAATGGATGCTAGCAA+TGG | 0.659562 | 7_3:-29818013 | Msa1100310:CDS |
| GCAACACCAACAATATACAA+TGG | 0.660582 | 7_3:-29820701 | Msa1100310:CDS |
| AGCATTAATAGTACTGCTAG+TGG | 0.666802 | 7_3:-29817962 | Msa1100310:CDS |
| TTTCGATAAACATCAATGGG+AGG | 0.669421 | 7_3:+29819536 | None:intergenic |
| ATATGAATACAACATCTGGA+GGG | 0.684673 | 7_3:-29818039 | Msa1100310:CDS |
| GGCAGAGTAGAGATTTCCAG+TGG | 0.688994 | 7_3:+29819499 | None:intergenic |
| GTTGATTAGTGGATAAACCA+TGG | 0.696353 | 7_3:-29820833 | Msa1100310:intron |
| TCTGGTATAGAACCTTGAGG+TGG | 0.699068 | 7_3:+29819275 | None:intergenic |
| ATTATAATAAGTTCCAGACA+TGG | 0.711222 | 7_3:+29820400 | None:intergenic |
| GCATCTGGTATAGAACCTTG+AGG | 0.720540 | 7_3:+29819272 | None:intergenic |
| ACTGGAGCTAGTGTTTATGG+GGG | 0.731779 | 7_3:-29817833 | Msa1100310:CDS |
| TATATGTTACCGGATAACAA+CGG | 0.733611 | 7_3:-29819602 | Msa1100310:CDS |
| GATTAGTGGATAAACCATGG+TGG | 0.786165 | 7_3:-29820830 | Msa1100310:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATGAATATATATTTTTT+TGG | - | chr7_3:29818850-29818869 | Msa1100310:intron | 10.0% |
| !! | AATTATACTTTGATATAAAA+GGG | + | chr7_3:29818982-29819001 | None:intergenic | 10.0% |
| !! | TAATTATACTTTGATATAAA+AGG | + | chr7_3:29818983-29819002 | None:intergenic | 10.0% |
| !!! | TTTAAAAGATGTTTTTTTTA+AGG | - | chr7_3:29819654-29819673 | Msa1100310:CDS | 10.0% |
| !! | GATTTATAATTAATGCAAAT+TGG | - | chr7_3:29818176-29818195 | Msa1100310:intron | 15.0% |
| !!! | TTTCCAAATGTTTTAAAAAT+TGG | - | chr7_3:29818413-29818432 | Msa1100310:intron | 15.0% |
| !!! | TTTTAAAAATTGGATCATAT+TGG | - | chr7_3:29818423-29818442 | Msa1100310:intron | 15.0% |
| !! | TCCTAAAAAAAATAAAGTTT+GGG | - | chr7_3:29818927-29818946 | Msa1100310:intron | 15.0% |
| !!! | AAAAAAACATCTTTTAAAAG+AGG | + | chr7_3:29819652-29819671 | None:intergenic | 15.0% |
| !! | AATAAGAAGATTAGATTAAT+AGG | - | chr7_3:29819737-29819756 | Msa1100310:intron | 15.0% |
| !! | CAAACAAAAATTAAAACATA+AGG | + | chr7_3:29819991-29820010 | None:intergenic | 15.0% |
| !!! | CTTATGTTTTAATTTTTGTT+TGG | - | chr7_3:29819989-29820008 | Msa1100310:intron | 15.0% |
| !!! | ATTTTGCTCAAAAATATATT+AGG | - | chr7_3:29820477-29820496 | Msa1100310:CDS | 15.0% |
| !! | ACAAAAGATCAATATAGAAA+CGG | - | chr7_3:29817970-29817989 | Msa1100310:CDS | 20.0% |
| !!! | GATCCAATTTTTAAAACATT+TGG | + | chr7_3:29818419-29818438 | None:intergenic | 20.0% |
| !! | CTCCTAAAAAAAATAAAGTT+TGG | - | chr7_3:29818926-29818945 | Msa1100310:intron | 20.0% |
| !!! | TCCCAAACTTTATTTTTTTT+AGG | + | chr7_3:29818931-29818950 | None:intergenic | 20.0% |
| !! | ATTCAATCACAATTTCATTT+AGG | - | chr7_3:29819711-29819730 | Msa1100310:CDS | 20.0% |
| !! | ACAAAAATTAAAACATAAGG+TGG | + | chr7_3:29819988-29820007 | None:intergenic | 20.0% |
| !! | ACTAAACAAAAAACGTTATT+GGG | + | chr7_3:29820102-29820121 | None:intergenic | 20.0% |
| !! | AACTAAACAAAAAACGTTAT+TGG | + | chr7_3:29820103-29820122 | None:intergenic | 20.0% |
| ! | CACAAAACAAAAGTAAACAA+AGG | + | chr7_3:29817767-29817786 | None:intergenic | 25.0% |
| ! | CTCAAGGAATATTAAAGTTT+GGG | + | chr7_3:29817848-29817867 | None:intergenic | 25.0% |
| ! | ACTCAAGGAATATTAAAGTT+TGG | + | chr7_3:29817849-29817868 | None:intergenic | 25.0% |
| !!! | TTCCTTGAGTTTTTAATTTG+AGG | - | chr7_3:29817859-29817878 | Msa1100310:CDS | 25.0% |
| ! | AACCTCAAATTAAAAACTCA+AGG | + | chr7_3:29817864-29817883 | None:intergenic | 25.0% |
| !!! | GAGGTTAATTAATTTGCTAT+TGG | - | chr7_3:29817878-29817897 | Msa1100310:CDS | 25.0% |
| !! | GATAATTTCTTGTTGATTAG+TGG | - | chr7_3:29817900-29817919 | Msa1100310:CDS | 25.0% |
| ! | ATTGTACCATTGTATATTGT+TGG | + | chr7_3:29818052-29818071 | None:intergenic | 25.0% |
| ! | TATGCAATTAAACAACTTGA+TGG | - | chr7_3:29818100-29818119 | Msa1100310:CDS | 25.0% |
| ! | ATGCAATTAAACAACTTGAT+GGG | - | chr7_3:29818101-29818120 | Msa1100310:CDS | 25.0% |
| ! | AATTAATGCAAATTGGACAT+TGG | - | chr7_3:29818183-29818202 | Msa1100310:intron | 25.0% |
| !! | TTGTTGATTGTTGGAATTTA+TGG | - | chr7_3:29818235-29818254 | Msa1100310:intron | 25.0% |
| ! | ATTATAATAAGTTCCAGACA+TGG | + | chr7_3:29818347-29818366 | None:intergenic | 25.0% |
| !! | ATGTCTGGAACTTATTATAA+TGG | - | chr7_3:29818346-29818365 | Msa1100310:intron | 25.0% |
| !! | TGTCTGGAACTTATTATAAT+GGG | - | chr7_3:29818347-29818366 | Msa1100310:intron | 25.0% |
| ! | ACTGATTGAACTATGAATAA+AGG | - | chr7_3:29818590-29818609 | Msa1100310:intron | 25.0% |
| ! | GAAAATACTACTACTTCTTT+AGG | - | chr7_3:29818643-29818662 | Msa1100310:intron | 25.0% |
| ! | AAAAAACTGCAAATCTAGTT+TGG | - | chr7_3:29818726-29818745 | Msa1100310:intron | 25.0% |
| !! | CATCATAAGTATTTTCTTCT+TGG | + | chr7_3:29818836-29818855 | None:intergenic | 25.0% |
| ! | AAAAGGGTTGAAAAGAAAAA+AGG | + | chr7_3:29818966-29818985 | None:intergenic | 25.0% |
| ! | ATGCTAAACTCTCAATATAT+AGG | - | chr7_3:29819002-29819021 | Msa1100310:intron | 25.0% |
| ! | ATATATAGGAGTTACTATGT+TGG | - | chr7_3:29819016-29819035 | Msa1100310:intron | 25.0% |
| !! | TGTTTTCGATAAACATCAAT+GGG | + | chr7_3:29819214-29819233 | None:intergenic | 25.0% |
| !! | ATGTTTTCGATAAACATCAA+TGG | + | chr7_3:29819215-29819234 | None:intergenic | 25.0% |
| ! | ATCAAATGGTACAAACAATT+AGG | - | chr7_3:29819394-29819413 | Msa1100310:CDS | 25.0% |
| ! | ATGTTAACTACACATGTAAA+TGG | - | chr7_3:29819517-29819536 | Msa1100310:CDS | 25.0% |
| !! | TTGTAGGATTTTCTCTATTA+TGG | + | chr7_3:29819807-29819826 | None:intergenic | 25.0% |
| !! | ATATGCAAGATGTATTTTCT+AGG | - | chr7_3:29820255-29820274 | Msa1100310:intron | 25.0% |
| !! | CAAGTATACATATAGCTTTA+AGG | + | chr7_3:29820305-29820324 | None:intergenic | 25.0% |
| ! | TTATGAGCTCAAAATATTAC+AGG | - | chr7_3:29820565-29820584 | Msa1100310:CDS | 25.0% |
| ! | GGTATAAATTCTTTGTTCAT+CGG | + | chr7_3:29820639-29820658 | None:intergenic | 25.0% |
| !! | TGGTAAAAGTTTGAAAGTTT+TGG | + | chr7_3:29820681-29820700 | None:intergenic | 25.0% |
| ! | GATGTTGTATTCATATTTGA+TGG | + | chr7_3:29820701-29820720 | None:intergenic | 25.0% |
| ! | TCAAATATGAATACAACATC+TGG | - | chr7_3:29820701-29820720 | Msa1100310:CDS | 25.0% |
| ! | TATGCAATTAATGGAAGAAA+TGG | - | chr7_3:29820866-29820885 | Msa1100310:intron | 25.0% |
| !! | GAAGAAATGGACATATTTTA+TGG | - | chr7_3:29820879-29820898 | Msa1100310:intron | 25.0% |
| !! | ATTTTATGGTCATATGAAAC+TGG | - | chr7_3:29820893-29820912 | Msa1100310:intron | 25.0% |
| ! | TTTGTCATCCTGAATTTTTG+CGG | + | chr7_3:29817738-29817757 | None:intergenic | 30.0% |
| TACCTAAACTAAGTTTGAAG+TGG | - | chr7_3:29817993-29818012 | Msa1100310:CDS | 30.0% | |
| TTCCACTTCAAACTTAGTTT+AGG | + | chr7_3:29817998-29818017 | None:intergenic | 30.0% | |
| !! | GTACAATTTATTTTCCAAGC+TGG | - | chr7_3:29818065-29818084 | Msa1100310:CDS | 30.0% |
| !! | ATTTATTTTCCAAGCTGGAA+TGG | - | chr7_3:29818070-29818089 | Msa1100310:CDS | 30.0% |
| CAAAACTTGAAGAAATTGAC+AGG | - | chr7_3:29818139-29818158 | Msa1100310:CDS | 30.0% | |
| TTGACAGGTTTAAATACAAC+TGG | - | chr7_3:29818154-29818173 | Msa1100310:CDS | 30.0% | |
| AAAAATTGGATCATATTGGC+TGG | - | chr7_3:29818427-29818446 | Msa1100310:intron | 30.0% | |
| !!! | TTGCAGTTTTTTTTCGAAGA+CGG | + | chr7_3:29818718-29818737 | None:intergenic | 30.0% |
| AAATATGCAACAATCTTCGA+TGG | + | chr7_3:29819068-29819087 | None:intergenic | 30.0% | |
| ATGGAAAACCTATATGTTAC+CGG | - | chr7_3:29819132-29819151 | Msa1100310:intron | 30.0% | |
| TATATGTTACCGGATAACAA+CGG | - | chr7_3:29819142-29819161 | Msa1100310:CDS | 30.0% | |
| !!! | ACATTCAAGTACGTTTTTTG+GGG | + | chr7_3:29819269-29819288 | None:intergenic | 30.0% |
| !!! | GACATTCAAGTACGTTTTTT+GGG | + | chr7_3:29819270-29819289 | None:intergenic | 30.0% |
| !!! | TGACATTCAAGTACGTTTTT+TGG | + | chr7_3:29819271-29819290 | None:intergenic | 30.0% |
| ! | ATTGAATTGGAGTGATTTTC+TGG | + | chr7_3:29819346-29819365 | None:intergenic | 30.0% |
| AAATCACTCCAATTCAATCT+TGG | - | chr7_3:29819348-29819367 | Msa1100310:CDS | 30.0% | |
| ATTACCATTCTCCAAATCAA+GGG | + | chr7_3:29819374-29819393 | None:intergenic | 30.0% | |
| TATTACCATTCTCCAAATCA+AGG | + | chr7_3:29819375-29819394 | None:intergenic | 30.0% | |
| TGGAGAATGGTAATATCAAA+TGG | - | chr7_3:29819380-29819399 | Msa1100310:CDS | 30.0% | |
| AAATGGTACAAACAATTAGG+AGG | - | chr7_3:29819397-29819416 | Msa1100310:CDS | 30.0% | |
| AATTAGGAGGATATGATGTA+TGG | - | chr7_3:29819410-29819429 | Msa1100310:CDS | 30.0% | |
| ACATGTGTAGTTAACATCAT+TGG | + | chr7_3:29819514-29819533 | None:intergenic | 30.0% | |
| TATTACCGTAAACCATAGAA+GGG | + | chr7_3:29819614-29819633 | None:intergenic | 30.0% | |
| ATATTACCGTAAACCATAGA+AGG | + | chr7_3:29819615-29819634 | None:intergenic | 30.0% | |
| ATTAAAACATAAGGTGGTGT+TGG | + | chr7_3:29819982-29820001 | None:intergenic | 30.0% | |
| !! | TTTTGTTTGGATTTCAGTTG+TGG | - | chr7_3:29820002-29820021 | Msa1100310:intron | 30.0% |
| ! | GAACTTTTGATCACGTATAT+GGG | - | chr7_3:29820196-29820215 | Msa1100310:intron | 30.0% |
| ! | GTTCAAGTAGTAAGGAATTT+TGG | + | chr7_3:29820222-29820241 | None:intergenic | 30.0% |
| ATGAACTAGTTCAAGTAGTA+AGG | + | chr7_3:29820230-29820249 | None:intergenic | 30.0% | |
| ! | ACTTAAAAGTTGTTAGCTTG+AGG | - | chr7_3:29820330-29820349 | Msa1100310:intron | 30.0% |
| TCAAAATATTACAGGAAGCA+GGG | - | chr7_3:29820573-29820592 | Msa1100310:CDS | 30.0% | |
| AATATGAATACAACATCTGG+AGG | - | chr7_3:29820704-29820723 | Msa1100310:CDS | 30.0% | |
| ATATGAATACAACATCTGGA+GGG | - | chr7_3:29820705-29820724 | Msa1100310:CDS | 30.0% | |
| CTAGCAATGGAAAAATTCTA+TGG | - | chr7_3:29820744-29820763 | Msa1100310:CDS | 30.0% | |
| TAGCAGTACTATTAATGCTA+GGG | + | chr7_3:29820781-29820800 | None:intergenic | 30.0% | |
| !!! | GCAAATGAAGTTGTTTTTGT+TGG | - | chr7_3:29820818-29820837 | Msa1100310:CDS | 30.0% |
| GGACACATTTATGCAATTAA+TGG | - | chr7_3:29820857-29820876 | Msa1100310:intron | 30.0% | |
| !! | TAGTAATGGATGTGTTTATG+TGG | - | chr7_3:29820943-29820962 | Msa1100310:CDS | 30.0% |
| !! | AGTAATGGATGTGTTTATGT+GGG | - | chr7_3:29820944-29820963 | Msa1100310:CDS | 30.0% |
| CATGGATATAATGTTTCTCT+AGG | - | chr7_3:29820968-29820987 | Msa1100310:CDS | 30.0% | |
| GGATTCTATTCTAACTATAC+TGG | - | chr7_3:29820989-29821008 | Msa1100310:CDS | 30.0% | |
| TTCTATTCTAACTATACTGG+TGG | - | chr7_3:29820992-29821011 | Msa1100310:CDS | 30.0% | |
| ! | GTTGATTAGTGGATAAACCA+TGG | - | chr7_3:29817911-29817930 | Msa1100310:CDS | 35.0% |
| TATTGAACAAATCTCCACCA+TGG | + | chr7_3:29817931-29817950 | None:intergenic | 35.0% | |
| ! | GTGGAGATTTGTTCAATAGA+AGG | - | chr7_3:29817933-29817952 | Msa1100310:CDS | 35.0% |
| ! | CAATAGAAGGTATGCATACA+AGG | - | chr7_3:29817946-29817965 | Msa1100310:CDS | 35.0% |
| GCAACACCAACAATATACAA+TGG | - | chr7_3:29818043-29818062 | Msa1100310:CDS | 35.0% | |
| TATATGTTACCATTCCAGCT+TGG | + | chr7_3:29818082-29818101 | None:intergenic | 35.0% | |
| !! | GCTGAAGATTTGTTGATTGT+TGG | - | chr7_3:29818226-29818245 | Msa1100310:intron | 35.0% |
| !! | CTGTTGTTATTGGTCTTGAA+AGG | - | chr7_3:29818263-29818282 | Msa1100310:intron | 35.0% |
| ! | GTAGATTTTCTACCATCAAG+TGG | - | chr7_3:29818756-29818775 | Msa1100310:intron | 35.0% |
| TTCGCGTTATTTGTAGAGAT+CGG | - | chr7_3:29818807-29818826 | Msa1100310:intron | 35.0% | |
| GAAGATTGTTGCATATTTCG+TGG | - | chr7_3:29819070-29819089 | Msa1100310:intron | 35.0% | |
| TTTGAGCATCAAGTTTGACA+AGG | + | chr7_3:29819099-29819118 | None:intergenic | 35.0% | |
| GTTGTTATCCGGTAACATAT+AGG | + | chr7_3:29819143-29819162 | None:intergenic | 35.0% | |
| TTTCGATAAACATCAATGGG+AGG | + | chr7_3:29819211-29819230 | None:intergenic | 35.0% | |
| AAACATGTCTATATTGCCAC+TGG | - | chr7_3:29819229-29819248 | Msa1100310:CDS | 35.0% | |
| ! | TCTATACCAGATGCAGATTT+TGG | - | chr7_3:29819481-29819500 | Msa1100310:CDS | 35.0% |
| ! | TTCAGAAAAGTGGATTTGCT+TGG | - | chr7_3:29819566-29819585 | Msa1100310:CDS | 35.0% |
| ! | TCAGAAAAGTGGATTTGCTT+GGG | - | chr7_3:29819567-29819586 | Msa1100310:CDS | 35.0% |
| ! | ATCTCTAGAAACTTCGTACT+AGG | + | chr7_3:29820175-29820194 | None:intergenic | 35.0% |
| ! | CGAACTTTTGATCACGTATA+TGG | - | chr7_3:29820195-29820214 | Msa1100310:intron | 35.0% |
| ! | TAAAAGTTGTTAGCTTGAGG+AGG | - | chr7_3:29820333-29820352 | Msa1100310:intron | 35.0% |
| CTCAAAATATTACAGGAAGC+AGG | - | chr7_3:29820572-29820591 | Msa1100310:CDS | 35.0% | |
| GGCATCTGAATTTGCAATAT+TGG | + | chr7_3:29820660-29820679 | None:intergenic | 35.0% | |
| CTAGCAGTACTATTAATGCT+AGG | + | chr7_3:29820782-29820801 | None:intergenic | 35.0% | |
| AGCATTAATAGTACTGCTAG+TGG | - | chr7_3:29820782-29820801 | Msa1100310:CDS | 35.0% | |
| AATGTGTCCAAATCTATCTG+TGG | + | chr7_3:29820846-29820865 | None:intergenic | 35.0% | |
| AAACTGGAGCTAGTGTTTAT+GGG | - | chr7_3:29820909-29820928 | Msa1100310:intron | 35.0% | |
| ! | GATTAGTGGATAAACCATGG+TGG | - | chr7_3:29817914-29817933 | Msa1100310:CDS | 40.0% |
| ! | AACTTGATGGGTCACTTGTA+TGG | - | chr7_3:29818113-29818132 | Msa1100310:CDS | 40.0% |
| AACAAATCTTCAGCCACAGT+TGG | + | chr7_3:29818220-29818239 | None:intergenic | 40.0% | |
| TATGGACCTGCTGTTGTTAT+TGG | - | chr7_3:29818253-29818272 | Msa1100310:intron | 40.0% | |
| TCAAGACCAATAACAACAGC+AGG | + | chr7_3:29818262-29818281 | None:intergenic | 40.0% | |
| !! | ATTGGTCTTGAAAGGAGAAC+TGG | - | chr7_3:29818271-29818290 | Msa1100310:intron | 40.0% |
| ! | GCTTGTTTGGTTGACTCATT+TGG | - | chr7_3:29818297-29818316 | Msa1100310:intron | 40.0% |
| GAATCAGCTAGTTCATCAGT+TGG | - | chr7_3:29818468-29818487 | Msa1100310:intron | 40.0% | |
| !! | TTCATCAGTTGGTTTGTTCG+TGG | - | chr7_3:29818479-29818498 | Msa1100310:intron | 40.0% |
| CACTTGCTCAACAATAGTTG+TGG | - | chr7_3:29818563-29818582 | Msa1100310:intron | 40.0% | |
| ATTAATCACGAGCCACTTGA+TGG | + | chr7_3:29818771-29818790 | None:intergenic | 40.0% | |
| TCTAACCTCACCATCAAGTA+TGG | - | chr7_3:29818900-29818919 | Msa1100310:intron | 40.0% | |
| CTAACCTCACCATCAAGTAT+GGG | - | chr7_3:29818901-29818920 | Msa1100310:intron | 40.0% | |
| TAACCTCACCATCAAGTATG+GGG | - | chr7_3:29818902-29818921 | Msa1100310:intron | 40.0% | |
| CTATGTTGGAACATCTTCAC+TGG | - | chr7_3:29819030-29819049 | Msa1100310:intron | 40.0% | |
| GTCAAACTTGATGCTCAAAC+CGG | - | chr7_3:29819100-29819119 | Msa1100310:intron | 40.0% | |
| CCTATCTTTCCGTTGTTATC+CGG | + | chr7_3:29819154-29819173 | None:intergenic | 40.0% | |
| ATCAAGGGCCAAGATTGAAT+TGG | + | chr7_3:29819359-29819378 | None:intergenic | 40.0% | |
| TTCAATCTTGGCCCTTGATT+TGG | - | chr7_3:29819360-29819379 | Msa1100310:CDS | 40.0% | |
| ACTTCTAATTGTCCACCTCA+AGG | - | chr7_3:29819457-29819476 | Msa1100310:CDS | 40.0% | |
| ! | GTTGTTGCTGTTCAGAAAAG+TGG | - | chr7_3:29819556-29819575 | Msa1100310:CDS | 40.0% |
| TGGAACCCTTCTATGGTTTA+CGG | - | chr7_3:29819606-29819625 | Msa1100310:CDS | 40.0% | |
| ! | GTGCAAGCAACATCTTTTGT+AGG | + | chr7_3:29819823-29819842 | None:intergenic | 40.0% |
| TACGTACCACACCTTGTATT+TGG | - | chr7_3:29820052-29820071 | Msa1100310:intron | 40.0% | |
| ACGTACCACACCTTGTATTT+GGG | - | chr7_3:29820053-29820072 | Msa1100310:intron | 40.0% | |
| TAGTTGACACCCCAAATACA+AGG | + | chr7_3:29820066-29820085 | None:intergenic | 40.0% | |
| TACTAGGCTAGCATTTGTAG+CGG | + | chr7_3:29820159-29820178 | None:intergenic | 40.0% | |
| CTTCATTTGCCACACTAACA+GGG | + | chr7_3:29820808-29820827 | None:intergenic | 40.0% | |
| ACTTCATTTGCCACACTAAC+AGG | + | chr7_3:29820809-29820828 | None:intergenic | 40.0% | |
| GTTGGATCCACAGATAGATT+TGG | - | chr7_3:29820836-29820855 | Msa1100310:intron | 40.0% | |
| GAAACTGGAGCTAGTGTTTA+TGG | - | chr7_3:29820908-29820927 | Msa1100310:intron | 40.0% | |
| AACTGGAGCTAGTGTTTATG+GGG | - | chr7_3:29820910-29820929 | Msa1100310:intron | 40.0% | |
| ! | GGGGGTATGTCAATTAGTAA+TGG | - | chr7_3:29820929-29820948 | Msa1100310:intron | 40.0% |
| ! | CCTGAATTTTTGCGGTGACA+TGG | + | chr7_3:29817730-29817749 | None:intergenic | 45.0% |
| CCATGTCACCGCAAAAATTC+AGG | - | chr7_3:29817727-29817746 | Msa1100310:CDS | 45.0% | |
| !! | TCAGTTGGTTTGTTCGTGGT+CGG | - | chr7_3:29818483-29818502 | Msa1100310:intron | 45.0% |
| TTAGGAGTCCCCATACTTGA+TGG | + | chr7_3:29818913-29818932 | None:intergenic | 45.0% | |
| GGAACATCTTCACTGGAAGA+AGG | - | chr7_3:29819037-29819056 | Msa1100310:intron | 45.0% | |
| ! | GGTTTTCCATAAGATGTCGC+CGG | + | chr7_3:29819122-29819141 | None:intergenic | 45.0% |
| CCGGATAACAACGGAAAGAT+AGG | - | chr7_3:29819151-29819170 | Msa1100310:CDS | 45.0% | |
| ! | GGAAAGATAGGAGCATATGC+TGG | - | chr7_3:29819163-29819182 | Msa1100310:CDS | 45.0% |
| ! | ATATGCTGGAGCTGCCATTT+GGG | - | chr7_3:29819177-29819196 | Msa1100310:CDS | 45.0% |
| ! | ACACACTTGTCTTGTTCAGC+AGG | + | chr7_3:29819319-29819338 | None:intergenic | 45.0% |
| !! | TTGGCCCTTGATTTGGAGAA+TGG | - | chr7_3:29819367-29819386 | Msa1100310:CDS | 45.0% |
| TCTGGTATAGAACCTTGAGG+TGG | + | chr7_3:29819472-29819491 | None:intergenic | 45.0% | |
| GCATCTGGTATAGAACCTTG+AGG | + | chr7_3:29819475-29819494 | None:intergenic | 45.0% | |
| !! | ACCAGATGCAGATTTTGGAG+AGG | - | chr7_3:29819486-29819505 | Msa1100310:CDS | 45.0% |
| CGTACCACACCTTGTATTTG+GGG | - | chr7_3:29820054-29820073 | Msa1100310:intron | 45.0% | |
| ! | AAGTTGTTAGCTTGAGGAGG+AGG | - | chr7_3:29820336-29820355 | Msa1100310:intron | 45.0% |
| TGAATACAACATCTGGAGGG+TGG | - | chr7_3:29820708-29820727 | Msa1100310:CDS | 45.0% | |
| GAATACAACATCTGGAGGGT+GGG | - | chr7_3:29820709-29820728 | Msa1100310:CDS | 45.0% | |
| ACTGGAGCTAGTGTTTATGG+GGG | - | chr7_3:29820911-29820930 | Msa1100310:intron | 45.0% | |
| GGATGTGTTTATGTGGGTCA+TGG | - | chr7_3:29820950-29820969 | Msa1100310:CDS | 45.0% | |
| GACACAAAAGGCAAAGAGTG+AGG | + | chr7_3:29821020-29821039 | None:intergenic | 45.0% | |
| ! | GGAGAACTGGTGAGCTTGTT+TGG | - | chr7_3:29818284-29818303 | Msa1100310:intron | 50.0% |
| GACATGGTAACAACTGCTGC+AGG | + | chr7_3:29818331-29818350 | None:intergenic | 50.0% | |
| GCAGCAGTTGTTACCATGTC+TGG | - | chr7_3:29818331-29818350 | Msa1100310:intron | 50.0% | |
| !! | AGTCCCCATACTTGATGGTG+AGG | + | chr7_3:29818908-29818927 | None:intergenic | 50.0% |
| CTCAAACCGGCGACATCTTA+TGG | - | chr7_3:29819113-29819132 | Msa1100310:intron | 50.0% | |
| CATATGCTGGAGCTGCCATT+TGG | - | chr7_3:29819176-29819195 | Msa1100310:CDS | 50.0% | |
| ! | TATGCTGGAGCTGCCATTTG+GGG | - | chr7_3:29819178-29819197 | Msa1100310:CDS | 50.0% |
| GGCAGAGTAGAGATTTCCAG+TGG | + | chr7_3:29819248-29819267 | None:intergenic | 50.0% | |
| GCCTCTCCAAAATCTGCATC+TGG | + | chr7_3:29819490-29819509 | None:intergenic | 50.0% | |
| ! | AAGTGGATTTGCTTGGGCCT+TGG | - | chr7_3:29819573-29819592 | Msa1100310:CDS | 50.0% |
| GCGACAATGGAACCCTTCTA+TGG | - | chr7_3:29819599-29819618 | Msa1100310:CDS | 50.0% | |
| GACACCCCAAATACAAGGTG+TGG | + | chr7_3:29820061-29820080 | None:intergenic | 50.0% | |
| ATATTACAGGAAGCAGGGCC+TGG | - | chr7_3:29820578-29820597 | Msa1100310:CDS | 50.0% | |
| CTAGCTGGAGGTGGAACATT+TGG | - | chr7_3:29820605-29820624 | Msa1100310:CDS | 50.0% | |
| GTGGCAATGGATGCTAGCAA+TGG | - | chr7_3:29820731-29820750 | Msa1100310:CDS | 50.0% | |
| GGCTAGAGCAACTCCAACTG+TGG | - | chr7_3:29818204-29818223 | Msa1100310:intron | 55.0% | |
| GGGAGGACTACTTCCCCAAA+TGG | + | chr7_3:29819194-29819213 | None:intergenic | 55.0% | |
| GGTTCCATTGTCGCGATCCA+AGG | + | chr7_3:29819593-29819612 | None:intergenic | 55.0% | |
| TACAACATCTGGAGGGTGGG+TGG | - | chr7_3:29820712-29820731 | Msa1100310:CDS | 55.0% | |
| TGCTAGTGGCCCTGTTAGTG+TGG | - | chr7_3:29820796-29820815 | Msa1100310:CDS | 55.0% | |
| TGGGCCTTGGATCGCGACAA+TGG | - | chr7_3:29819586-29819605 | Msa1100310:CDS | 60.0% | |
| TTACAGGAAGCAGGGCCTGG+TGG | - | chr7_3:29820581-29820600 | Msa1100310:CDS | 60.0% | |
| ATCTGGAGGGTGGGTGGCAA+TGG | - | chr7_3:29820718-29820737 | Msa1100310:CDS | 60.0% | |
| CCACCTCCAGCTAGTCCACC+AGG | + | chr7_3:29820599-29820618 | None:intergenic | 65.0% | |
| !! | CCTGGTGGACTAGCTGGAGG+TGG | - | chr7_3:29820596-29820615 | Msa1100310:CDS | 65.0% |
| !! | GCAGGGCCTGGTGGACTAGC+TGG | - | chr7_3:29820590-29820609 | Msa1100310:CDS | 70.0% |
| !! | GGGCCTGGTGGACTAGCTGG+AGG | - | chr7_3:29820593-29820612 | Msa1100310:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 29817724 | 29821042 | 29817724 | ID=Msa1100310;Name=Msa1100310 |
| chr7_3 | mRNA | 29817724 | 29821042 | 29817724 | ID=Msa1100310-mRNA-1;Parent=Msa1100310;Name=Msa1100310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=5|0.33|0.25|1|1|1|4|0|535 |
| chr7_3 | exon | 29817724 | 29818179 | 29817724 | ID=Msa1100310-mRNA-1:exon:6377;Parent=Msa1100310-mRNA-1 |
| chr7_3 | exon | 29819139 | 29819742 | 29819139 | ID=Msa1100310-mRNA-1:exon:6376;Parent=Msa1100310-mRNA-1 |
| chr7_3 | exon | 29820398 | 29820846 | 29820398 | ID=Msa1100310-mRNA-1:exon:6375;Parent=Msa1100310-mRNA-1 |
| chr7_3 | exon | 29820939 | 29821042 | 29820939 | ID=Msa1100310-mRNA-1:exon:6374;Parent=Msa1100310-mRNA-1 |
| chr7_3 | five_prime_UTR | 29821038 | 29821042 | 29821038 | ID=Msa1100310-mRNA-1:five_prime_utr;Parent=Msa1100310-mRNA-1 |
| chr7_3 | CDS | 29820939 | 29821037 | 29820939 | ID=Msa1100310-mRNA-1:cds;Parent=Msa1100310-mRNA-1 |
| chr7_3 | CDS | 29820398 | 29820846 | 29820398 | ID=Msa1100310-mRNA-1:cds;Parent=Msa1100310-mRNA-1 |
| chr7_3 | CDS | 29819139 | 29819742 | 29819139 | ID=Msa1100310-mRNA-1:cds;Parent=Msa1100310-mRNA-1 |
| chr7_3 | CDS | 29817724 | 29818179 | 29817724 | ID=Msa1100310-mRNA-1:cds;Parent=Msa1100310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
