AlfalfaGEDB | Msa1358840

M. sativa cultivar zhongmu-4 / Msa1358840

KEGG: K04567
GO: GO:0003674 GO:0003824 GO:0004812 GO:0004824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016874 GO:0016875 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0140098 GO:0140101
PFAM: PF01336.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358840	XP_028781209.1	78.766	551	112	4	14	564	50	595	0.0	919

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358840	sp\|Q9ZPI1\|SYKC_ARATH	70.662	559	150	7	11	568	70	615	0.0	828

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358840	A0A445HG96	80.000	545	104	4	20	564	60	599	0.0	919

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1358840	Msa1447470	0.925402	1.926904e-90	-8.615850e-47
Msa1358840	Msa1456130	0.945318	3.822731e-104	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358840	MtrunA17_Chr2g0298001	77.117	555	116	5	13	567	54	597	0.0	882
Msa1358840	MtrunA17_Chr4g0072181	95.467	375	16	1	174	547	1	375	0.0	737
Msa1358840	MtrunA17_Chr4g0072161	76.271	413	90	3	97	508	5	410	0.0	633
Msa1358840	MtrunA17_Chr4g0072141	86.875	320	42	0	252	571	1	320	0.0	594
Msa1358840	MtrunA17_Chr8g0335841	35.599	559	294	12	31	563	59	577	1.61e-103	323
Msa1358840	MtrunA17_Chr4g0072151	70.950	179	44	4	34	211	30	201	8.51e-73	233
Msa1358840	MtrunA17_Chr1g0150111	23.577	492	317	15	79	557	87	532	6.86e-24	105
Msa1358840	MtrunA17_Chr2g0308881	64.789	71	23	1	482	552	16	84	4.13e-22	91.7
Msa1358840	MtrunA17_Chr4g0072171	67.308	52	17	0	422	473	3	54	1.51e-17	76.6
Msa1358840	MtrunA17_Chr8g0391331	26.389	144	104	2	211	353	197	339	1.71e-12	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358840	AT3G11710.1	70.662	559	150	7	11	568	70	615	0.0	828
Msa1358840	AT3G13490.1	36.348	564	286	14	31	563	80	601	3.04e-101	319
Msa1358840	AT3G30805.1	79.245	53	11	0	505	557	71	123	9.73e-24	98.6
Msa1358840	AT4G26870.1	23.848	499	316	15	78	557	70	523	7.39e-22	99.8
Msa1358840	AT4G31180.1	22.128	592	378	21	5	557	2	549	8.91e-19	90.5
Msa1358840	AT4G31180.2	22.128	592	378	21	5	557	2	549	8.91e-19	90.5
Msa1358840	AT4G33760.1	27.211	147	105	2	208	353	196	341	1.88e-12	70.5
Msa1358840	AT4G33760.2	27.211	147	105	2	208	353	60	205	2.11e-12	70.1

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Find 179 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAAGGTTTCTACCT+TGG	0.429636	tig0016540:-30079	None:intergenic
AAAATCCAATATCATTCAAA+TGG	0.432612	tig0016540:+33448	Msa1358840:CDS
AAACAAAAGGTTTCTACCTT+GGG	0.345110	tig0016540:-30078	None:intergenic
AAACCCCAACCGCCAGTTGG+TGG	0.516970	tig0016540:-34726	None:intergenic
AAATTGCATGTAAATAATTT+AGG	0.217907	tig0016540:+35093	Msa1358840:three_prime_UTR
AACAAAAGGTTTCTACCTTG+GGG	0.589245	tig0016540:-30077	None:intergenic
AACAAACCTCCAAGAAATCA+CGG	0.611443	tig0016540:-32931	None:intergenic
AACAACCGAGCAGTGGTTTG+AGG	0.500335	tig0016540:-33734	None:intergenic
AACAGAGAATTTGTGTGGAT+AGG	0.528591	tig0016540:-30634	None:intergenic
AACCGAGCAGTGGTTTGAGG+GGG	0.655651	tig0016540:-33731	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCATAAAATATGCAATGTCT+GGG	-	tig0016540:29919-29938	None:intergenic	30.0%
TGCATAAAATATGCAATGTC+TGG	-	tig0016540:29920-29939	None:intergenic	30.0%
AAACAAAAGGTTTCTACCTT+GGG	-	tig0016540:30081-30100	None:intergenic	30.0%
AAAACAAAAGGTTTCTACCT+TGG	-	tig0016540:30082-30101	None:intergenic	30.0%
ATGATATCTTCTTCATCATC+AGG	-	tig0016540:30446-30465	None:intergenic	30.0%
ATTGTTGCAAATATGTCAGA+AGG	+	tig0016540:30603-30622	Msa1358840:CDS	30.0%
TTGTTGCAAATATGTCAGAA+GGG	+	tig0016540:30604-30623	Msa1358840:CDS	30.0%
ATAGAAACAGAGAATTTGTG+TGG	-	tig0016540:30642-30661	None:intergenic	30.0%
TATCAAGGGTTAATAAGCAA+TGG	+	tig0016540:30687-30706	Msa1358840:CDS	30.0%
TATCTGTCTTTCTGTGTATT+AGG	+	tig0016540:30807-30826	Msa1358840:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0016540	gene	29780	35363	29780	ID=Msa1358840;Name=Msa1358840
tig0016540	mRNA	29780	35363	29780	ID=Msa1358840-mRNA-1;Parent=Msa1358840;Name=Msa1358840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=514\|1\|1\|1\|1\|1\|16\|295\|571
tig0016540	exon	29780	30344	29780	ID=Msa1358840-mRNA-1:exon:11032;Parent=Msa1358840-mRNA-1
tig0016540	exon	30428	30475	30428	ID=Msa1358840-mRNA-1:exon:11033;Parent=Msa1358840-mRNA-1
tig0016540	exon	30576	30744	30576	ID=Msa1358840-mRNA-1:exon:11034;Parent=Msa1358840-mRNA-1
tig0016540	exon	30829	30925	30829	ID=Msa1358840-mRNA-1:exon:11035;Parent=Msa1358840-mRNA-1
tig0016540	exon	31404	31489	31404	ID=Msa1358840-mRNA-1:exon:11036;Parent=Msa1358840-mRNA-1
tig0016540	exon	31713	31834	31713	ID=Msa1358840-mRNA-1:exon:11037;Parent=Msa1358840-mRNA-1
tig0016540	exon	31922	31981	31922	ID=Msa1358840-mRNA-1:exon:11038;Parent=Msa1358840-mRNA-1
tig0016540	exon	32821	32946	32821	ID=Msa1358840-mRNA-1:exon:11039;Parent=Msa1358840-mRNA-1
tig0016540	exon	33030	33312	33030	ID=Msa1358840-mRNA-1:exon:11040;Parent=Msa1358840-mRNA-1
tig0016540	exon	33416	33515	33416	ID=Msa1358840-mRNA-1:exon:11041;Parent=Msa1358840-mRNA-1
tig0016540	exon	33607	33763	33607	ID=Msa1358840-mRNA-1:exon:11042;Parent=Msa1358840-mRNA-1
tig0016540	exon	34072	34215	34072	ID=Msa1358840-mRNA-1:exon:11043;Parent=Msa1358840-mRNA-1
tig0016540	exon	34320	34388	34320	ID=Msa1358840-mRNA-1:exon:11044;Parent=Msa1358840-mRNA-1
tig0016540	exon	34654	34797	34654	ID=Msa1358840-mRNA-1:exon:11045;Parent=Msa1358840-mRNA-1
tig0016540	exon	34881	34932	34881	ID=Msa1358840-mRNA-1:exon:11046;Parent=Msa1358840-mRNA-1
tig0016540	exon	35061	35363	35061	ID=Msa1358840-mRNA-1:exon:11047;Parent=Msa1358840-mRNA-1
tig0016540	five_prime_UTR	29780	30293	29780	ID=Msa1358840-mRNA-1:five_prime_utr;Parent=Msa1358840-mRNA-1
tig0016540	CDS	30294	30344	30294	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	30428	30475	30428	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	30576	30744	30576	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	30829	30925	30829	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	31404	31489	31404	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	31713	31834	31713	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	31922	31981	31922	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	32821	32946	32821	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	33030	33312	33030	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	33416	33515	33416	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	33607	33763	33607	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	34072	34215	34072	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	34320	34388	34320	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	34654	34797	34654	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	34881	34932	34881	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	CDS	35061	35068	35061	ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1
tig0016540	three_prime_UTR	35069	35363	35069	ID=Msa1358840-mRNA-1:three_prime_utr;Parent=Msa1358840-mRNA-1

Gene Sequence

>Msa1358840

ATGGAAGCTACTACTTCGTCGGAGCCTATACCTCCGGCAACCGCGAATACTGCTGCTGCTGCTCCACCTGATGATGAAGAAGATATCATCGACCCAAAGCAATACCGTGAGAACAGGCTTAAGTATATTGTTGCAAATATGTCAGAAGGGAATGAACCCTATCCACACAAATTCTCTGTTTCTATGACTATTCTTCAATACATTGATACATATCAAGGGTTAATAAGCAATGGAGAGCACCTTGAAGATGTTTCTGTGTCTTTGGCTGGCCGAGTTAAGGCCATACGCACTTCAGGTGCAAAGCTTGTCTTTTATGACATGTATGGCGATGATGACTTCAAGGTCCAGATTATGGCTGATGCAAGGAGTTCTGACTTGGATGTGGATGAATTTAAAAAATTGCATTCTAGTGTGAAGCGATTTGACATTGTCGGTGTCACTGGATTTCCAGGGAAAAGTAGGACAGGAGAGCTTAGTATTTTCCCCAAGAATTTTATAGTTCTGTCTCATTGTCTGCACATGATGCCCAAACAAGAGTCTGCTGCTGCTGCCGCCGATAATGCAAATTTGATGGGAAATCAATGGGTACCAGGAAGTACCAGGAATCCTGAAACATATATTTTGAAGGATCAGGAAACAAGATATCGTTCACGCCATTTGGATTTGATGTTGCATCCAGAAGTTCGAGAAATATTCAAAACTAGACGTAGAATAGTTAAATACATTCGGAAGTACCTTGATGACCGTGATTTCTTGGAGGTTGAAACACCTATGATGATCAAGATTGCCGGTGGAGCAGCAGCTCGTCCATTTGTAACTCATCACAATGAACTTGACATGAAATTATTCATGAGAATTGCTCCAGAACTTTATCTCAAGCAGCTGGTTATTGGTGGGCTGGGTCGTGTTTATGAAATCGGTAAAGTATATAGAAATGAGAGTATGGACTTGACCCACAATCCTGAGTTCACTACGTGTGAGTTCTATATGCCGTTTGCGGATTACTATGACCTGATGGAGATAACAGAGGAAATGTTGAGCGGTATTGTTTACCAACTTACAAATGGAAGCTATAAAATCCAATATCATTCAAATGGAGTTGACAAGGATCCTATCGAAATAGACTTCACTCCACCCTTCAGGAGGATTGATATGATTGAGGAACTAGAGAGTATGGCAGGACTTAGTATTCCAAAGGACTTGGCCAGTGAGGAAGCTAATCAATATCTGAAGAATGCATGCTTGAAGTATGACATCAAATGCGCTCCCCCTCAAACCACTGCTCGGTTGTTGGATAAACTTGTAGGCCACTTTTTGGAAGAAACGTGTGTTAATCCTACATTCATCATGAATCACCCCGAAATAATGAGTCCTTTGGCCAAGTCGCACAGAGCAAAACCAGGCCTGACCGAACGTTTTGAATTGTTTGTCAATAAGCATGAACTTTGCAATGCATATACTGAACTGAACAATCCTGTTGTGCAGCGTCAGAGATTTGCTCAACAACTCAAGGATCGGCAATCGGGGGATGATGAAGCGATGGCCTTAGACGAGGAATTTTGCACTGCTTTGGAGTATGGTATGCCACCAACTGGCGGTTGGGGTTTGGGTATTGATAGGTTGACGATGTTACTGACTGATTCACAGAACATAAAGGAAGTTATTCTCTTCAATGCCATGAAACCTCAAGATGTACCTTCAGCTAAAGGAACTTGA

Protein sequence

>Msa1358840

MEATTSSEPIPPATANTAAAAPPDDEEDIIDPKQYRENRLKYIVANMSEGNEPYPHKFSVSMTILQYIDTYQGLISNGEHLEDVSVSLAGRVKAIRTSGAKLVFYDMYGDDDFKVQIMADARSSDLDVDEFKKLHSSVKRFDIVGVTGFPGKSRTGELSIFPKNFIVLSHCLHMMPKQESAAAAADNANLMGNQWVPGSTRNPETYILKDQETRYRSRHLDLMLHPEVREIFKTRRRIVKYIRKYLDDRDFLEVETPMMIKIAGGAAARPFVTHHNELDMKLFMRIAPELYLKQLVIGGLGRVYEIGKVYRNESMDLTHNPEFTTCEFYMPFADYYDLMEITEEMLSGIVYQLTNGSYKIQYHSNGVDKDPIEIDFTPPFRRIDMIEELESMAGLSIPKDLASEEANQYLKNACLKYDIKCAPPQTTARLLDKLVGHFLEETCVNPTFIMNHPEIMSPLAKSHRAKPGLTERFELFVNKHELCNAYTELNNPVVQRQRFAQQLKDRQSGDDEAMALDEEFCTALEYGMPPTGGWGLGIDRLTMLLTDSQNIKEVILFNAMKPQDVPSAKGT*