Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358840 | XP_028781209.1 | 78.766 | 551 | 112 | 4 | 14 | 564 | 50 | 595 | 0.0 | 919 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358840 | sp|Q9ZPI1|SYKC_ARATH | 70.662 | 559 | 150 | 7 | 11 | 568 | 70 | 615 | 0.0 | 828 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358840 | A0A445HG96 | 80.000 | 545 | 104 | 4 | 20 | 564 | 60 | 599 | 0.0 | 919 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1358840 | Msa1447470 | 0.925402 | 1.926904e-90 | -8.615850e-47 |
| Msa1358840 | Msa1456130 | 0.945318 | 3.822731e-104 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358840 | MtrunA17_Chr2g0298001 | 77.117 | 555 | 116 | 5 | 13 | 567 | 54 | 597 | 0.0 | 882 |
| Msa1358840 | MtrunA17_Chr4g0072181 | 95.467 | 375 | 16 | 1 | 174 | 547 | 1 | 375 | 0.0 | 737 |
| Msa1358840 | MtrunA17_Chr4g0072161 | 76.271 | 413 | 90 | 3 | 97 | 508 | 5 | 410 | 0.0 | 633 |
| Msa1358840 | MtrunA17_Chr4g0072141 | 86.875 | 320 | 42 | 0 | 252 | 571 | 1 | 320 | 0.0 | 594 |
| Msa1358840 | MtrunA17_Chr8g0335841 | 35.599 | 559 | 294 | 12 | 31 | 563 | 59 | 577 | 1.61e-103 | 323 |
| Msa1358840 | MtrunA17_Chr4g0072151 | 70.950 | 179 | 44 | 4 | 34 | 211 | 30 | 201 | 8.51e-73 | 233 |
| Msa1358840 | MtrunA17_Chr1g0150111 | 23.577 | 492 | 317 | 15 | 79 | 557 | 87 | 532 | 6.86e-24 | 105 |
| Msa1358840 | MtrunA17_Chr2g0308881 | 64.789 | 71 | 23 | 1 | 482 | 552 | 16 | 84 | 4.13e-22 | 91.7 |
| Msa1358840 | MtrunA17_Chr4g0072171 | 67.308 | 52 | 17 | 0 | 422 | 473 | 3 | 54 | 1.51e-17 | 76.6 |
| Msa1358840 | MtrunA17_Chr8g0391331 | 26.389 | 144 | 104 | 2 | 211 | 353 | 197 | 339 | 1.71e-12 | 70.1 |
| Msa1358840 | MtrunA17_Chr4g0025921 | 27.891 | 147 | 102 | 3 | 210 | 353 | 182 | 327 | 2.15e-12 | 69.7 |
| Msa1358840 | MtrunA17_Chr4g0067881 | 25.694 | 144 | 105 | 2 | 211 | 353 | 195 | 337 | 5.33e-12 | 68.6 |
| Msa1358840 | MtrunA17_Chr4g0025931 | 27.397 | 146 | 102 | 3 | 211 | 353 | 169 | 313 | 2.12e-11 | 66.6 |
| Msa1358840 | MtrunA17_Chr1g0211491 | 26.389 | 144 | 104 | 2 | 211 | 353 | 152 | 294 | 8.37e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358840 | AT3G11710.1 | 70.662 | 559 | 150 | 7 | 11 | 568 | 70 | 615 | 0.0 | 828 |
| Msa1358840 | AT3G13490.1 | 36.348 | 564 | 286 | 14 | 31 | 563 | 80 | 601 | 3.04e-101 | 319 |
| Msa1358840 | AT3G30805.1 | 79.245 | 53 | 11 | 0 | 505 | 557 | 71 | 123 | 9.73e-24 | 98.6 |
| Msa1358840 | AT4G26870.1 | 23.848 | 499 | 316 | 15 | 78 | 557 | 70 | 523 | 7.39e-22 | 99.8 |
| Msa1358840 | AT4G31180.1 | 22.128 | 592 | 378 | 21 | 5 | 557 | 2 | 549 | 8.91e-19 | 90.5 |
| Msa1358840 | AT4G31180.2 | 22.128 | 592 | 378 | 21 | 5 | 557 | 2 | 549 | 8.91e-19 | 90.5 |
| Msa1358840 | AT4G33760.1 | 27.211 | 147 | 105 | 2 | 208 | 353 | 196 | 341 | 1.88e-12 | 70.5 |
| Msa1358840 | AT4G33760.2 | 27.211 | 147 | 105 | 2 | 208 | 353 | 60 | 205 | 2.11e-12 | 70.1 |
Find 179 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTTATAATACAATATT+AGG | 0.163928 | tig0016540:+35331 | Msa1358840:three_prime_UTR |
| GCCAAAGGACTCATTATTTC+GGG | 0.196107 | tig0016540:-34129 | None:intergenic |
| CAACTCCATTTGAATGATAT+TGG | 0.196418 | tig0016540:-33453 | None:intergenic |
| TCCTTCAAAATATATGTTTC+AGG | 0.196607 | tig0016540:-31955 | None:intergenic |
| CCAACTGGCGGTTGGGGTTT+GGG | 0.215630 | tig0016540:+34729 | Msa1358840:CDS |
| AAATTGCATGTAAATAATTT+AGG | 0.217907 | tig0016540:+35093 | Msa1358840:three_prime_UTR |
| ACCAACTGGCGGTTGGGGTT+TGG | 0.224391 | tig0016540:+34728 | Msa1358840:CDS |
| TTGAATATTTCTCGAACTTC+TGG | 0.228444 | tig0016540:-32863 | None:intergenic |
| TAAATTATTTACATGCAATT+TGG | 0.233312 | tig0016540:-35091 | None:intergenic |
| TGAAGATGTTTCTGTGTCTT+TGG | 0.264568 | tig0016540:+30719 | Msa1358840:CDS |
| CACCATCAAATTTGCATTAT+CGG | 0.265417 | tig0016540:-31815 | None:intergenic |
| CCTTGATGACCGTGATTTCT+TGG | 0.266714 | tig0016540:+32922 | Msa1358840:CDS |
| TATCTCAAGCAGCTGGTTAT+TGG | 0.271777 | tig0016540:+33141 | Msa1358840:CDS |
| GGCCAAAGGACTCATTATTT+CGG | 0.289952 | tig0016540:-34130 | None:intergenic |
| TCAGGATTCCTGGTACTTCC+TGG | 0.304810 | tig0016540:-31937 | None:intergenic |
| GTCGGTGTCACTGGATTTCC+AGG | 0.307527 | tig0016540:+31468 | Msa1358840:CDS |
| TGCTTTGTCCTCCTTTGATT+TGG | 0.317512 | tig0016540:+30265 | Msa1358840:five_prime_UTR |
| TGCATAAAATATGCAATGTC+TGG | 0.317625 | tig0016540:-29917 | None:intergenic |
| AAGATATCGTTCACGCCATT+TGG | 0.327737 | tig0016540:+32826 | Msa1358840:CDS |
| AGACAGAACTATAAAATTCT+TGG | 0.329623 | tig0016540:-31746 | None:intergenic |
| ACCAAACCATTCGGTTTAAT+CGG | 0.332257 | tig0016540:-29819 | None:intergenic |
| GCAGCTGGTTATTGGTGGGC+TGG | 0.333137 | tig0016540:+33149 | Msa1358840:CDS |
| TCCTCACTGGCCAAGTCCTT+TGG | 0.335575 | tig0016540:-33656 | None:intergenic |
| AGCAGCAGCAGACTCTTGTT+TGG | 0.336308 | tig0016540:-31788 | None:intergenic |
| AAACAAAAGGTTTCTACCTT+GGG | 0.345110 | tig0016540:-30078 | None:intergenic |
| TATGCCACCAACTGGCGGTT+GGG | 0.346260 | tig0016540:+34722 | Msa1358840:CDS |
| GATGTTTCTGTGTCTTTGGC+TGG | 0.346939 | tig0016540:+30723 | Msa1358840:CDS |
| AATATATGTTTCAGGATTCC+TGG | 0.356980 | tig0016540:-31947 | None:intergenic |
| TCCTTTGATTTGGTTGGTAA+TGG | 0.357585 | tig0016540:+30275 | Msa1358840:exon |
| AGTGCAAAATTCCTCGTCTA+AGG | 0.358905 | tig0016540:-34685 | None:intergenic |
| TGACTTCAAGGTCCAGATTA+TGG | 0.363357 | tig0016540:+30893 | Msa1358840:CDS |
| CTTACAGTATTCGCGGTTGC+CGG | 0.369036 | tig0016540:-30327 | None:intergenic |
| TTGACTTGGGAACCAAGTTT+TGG | 0.376470 | tig0016540:-30129 | None:intergenic |
| GTTGGGGTTTGGGTATTGAT+AGG | 0.380474 | tig0016540:+34739 | Msa1358840:CDS |
| ACCTTGCATCAGCCATAATC+TGG | 0.381672 | tig0016540:-30905 | None:intergenic |
| AATCTCTGACGCTGCACAAC+AGG | 0.381681 | tig0016540:-34350 | None:intergenic |
| AGGTACATCTTGAGGTTTCA+TGG | 0.381888 | tig0016540:-34900 | None:intergenic |
| GATTGAGGAACTAGAGAGTA+TGG | 0.382971 | tig0016540:+33619 | Msa1358840:CDS |
| GACAGAACTATAAAATTCTT+GGG | 0.388826 | tig0016540:-31745 | None:intergenic |
| GCAGCAGCAGACTCTTGTTT+GGG | 0.392009 | tig0016540:-31787 | None:intergenic |
| GGAGGACAAAGCAACTAAAC+AGG | 0.392257 | tig0016540:-30255 | None:intergenic |
| AGTATATAGAAATGAGAGTA+TGG | 0.401531 | tig0016540:+33194 | Msa1358840:CDS |
| CCCACTCCCCAGCCAAAACT+TGG | 0.403560 | tig0016540:+30117 | Msa1358840:five_prime_UTR |
| GTTAAGGCCATACGCACTTC+AGG | 0.404660 | tig0016540:+30834 | Msa1358840:CDS |
| TGCATATTAGGATCGGCAAT+CGG | 0.407222 | tig0016540:+34644 | Msa1358840:intron |
| TTTGACATTGTCGGTGTCAC+TGG | 0.407314 | tig0016540:+31459 | Msa1358840:CDS |
| GCATATTAGGATCGGCAATC+GGG | 0.409258 | tig0016540:+34645 | Msa1358840:intron |
| CTCCTAATCTTAATCCTACT+TGG | 0.413171 | tig0016540:-35240 | None:intergenic |
| TAGACTTCACTCCACCCTTC+AGG | 0.413847 | tig0016540:+33494 | Msa1358840:CDS |
| GACAAACAATTCAAAACGTT+CGG | 0.414822 | tig0016540:-34181 | None:intergenic |
| TCAAACCACTGCTCGGTTGT+TGG | 0.419167 | tig0016540:+33736 | Msa1358840:CDS |
| GGGAATTGAAGAAGATTTGA+AGG | 0.420265 | tig0016540:+30191 | Msa1358840:five_prime_UTR |
| ACCGATTAAACCGAATGGTT+TGG | 0.421215 | tig0016540:+29818 | Msa1358840:five_prime_UTR |
| TTGATCATATTGCAGCTTGT+AGG | 0.421852 | tig0016540:+34057 | Msa1358840:intron |
| AAAACAAAAGGTTTCTACCT+TGG | 0.429636 | tig0016540:-30079 | None:intergenic |
| GATTGGATCGGATGCAGGTT+CGG | 0.430534 | tig0016540:+29784 | Msa1358840:five_prime_UTR |
| ATGATATCTTCTTCATCATC+AGG | 0.430923 | tig0016540:-30443 | None:intergenic |
| CTCAAGCAGCTGGTTATTGG+TGG | 0.432009 | tig0016540:+33144 | Msa1358840:CDS |
| AAAATCCAATATCATTCAAA+TGG | 0.432612 | tig0016540:+33448 | Msa1358840:CDS |
| CAGCTGGTTATTGGTGGGCT+GGG | 0.434162 | tig0016540:+33150 | Msa1358840:CDS |
| AACCTGCATCCGATCCAATC+TGG | 0.435412 | tig0016540:-29781 | None:intergenic |
| TATAGCTTCCATTTGTAAGT+TGG | 0.436164 | tig0016540:-33426 | None:intergenic |
| CGCCGATAATGCAAATTTGA+TGG | 0.437048 | tig0016540:+31813 | Msa1358840:CDS |
| CTGGGTCGTGTTTATGAAAT+CGG | 0.437305 | tig0016540:+33168 | Msa1358840:CDS |
| CAATACATTGATACATATCA+AGG | 0.438267 | tig0016540:+30672 | Msa1358840:CDS |
| CAAGATGTACCTTCAGCTAA+AGG | 0.438689 | tig0016540:+34911 | Msa1358840:CDS |
| ACAGAGAATTTGTGTGGATA+GGG | 0.441765 | tig0016540:-30633 | None:intergenic |
| CCTATGATGATCAAGATTGC+CGG | 0.452143 | tig0016540:+33039 | Msa1358840:CDS |
| TTGTCCTCCTTTGATTTGGT+TGG | 0.452587 | tig0016540:+30269 | Msa1358840:five_prime_UTR |
| ATTGTTTACCAACTTACAAA+TGG | 0.453702 | tig0016540:+33418 | Msa1358840:CDS |
| TTAAACCGAATGGTTTGGTC+TGG | 0.455590 | tig0016540:+29823 | Msa1358840:five_prime_UTR |
| CTGTGTATTAGGCCGAGTTA+AGG | 0.455835 | tig0016540:+30818 | Msa1358840:intron |
| TTTCCTCTGTTATCTCCATC+AGG | 0.456139 | tig0016540:-33281 | None:intergenic |
| CCGGCAATCTTGATCATCAT+AGG | 0.457344 | tig0016540:-33039 | None:intergenic |
| TGCAGCAATACCGTGAGAAC+AGG | 0.459033 | tig0016540:+30571 | Msa1358840:intron |
| CTCCAAGTAGGATTAAGATT+AGG | 0.459586 | tig0016540:+35238 | Msa1358840:three_prime_UTR |
| CCCCGAAATAATGAGTCCTT+TGG | 0.462367 | tig0016540:+34128 | Msa1358840:CDS |
| TTAATCCTCATGAGTTGGTA+TGG | 0.470872 | tig0016540:-29944 | None:intergenic |
| ATGCCACCAACTGGCGGTTG+GGG | 0.472904 | tig0016540:+34723 | Msa1358840:CDS |
| TCAAAACGTTCGGTCAGGCC+TGG | 0.476366 | tig0016540:-34171 | None:intergenic |
| TTATACACAGATTGTTGACT+TGG | 0.477707 | tig0016540:-30143 | None:intergenic |
| GAGTATGGTATGCCACCAAC+TGG | 0.483125 | tig0016540:+34714 | Msa1358840:CDS |
| TGGACGAGCTGCTGCTCCAC+CGG | 0.485920 | tig0016540:-33058 | None:intergenic |
| GTAGAATAGTTAAATACATT+CGG | 0.486909 | tig0016540:+32894 | Msa1358840:CDS |
| ATTATCTGTAGGGAAATCAA+TGG | 0.489576 | tig0016540:+31911 | Msa1358840:intron |
| GACTGATTCACAGAACATAA+AGG | 0.490806 | tig0016540:+34776 | Msa1358840:CDS |
| GGGTGATTCATGATGAATGT+AGG | 0.490979 | tig0016540:-34108 | None:intergenic |
| GGCCAGATTGGATCGGATGC+AGG | 0.492924 | tig0016540:+29779 | None:intergenic |
| TCATTGTGATGAGTTACAAA+TGG | 0.493670 | tig0016540:-33078 | None:intergenic |
| TGATGACCGTGATTTCTTGG+AGG | 0.494735 | tig0016540:+32925 | Msa1358840:CDS |
| TTCGCGGTTGCCGGAGGTAT+AGG | 0.495918 | tig0016540:-30318 | None:intergenic |
| ACTTAGTATTCCAAAGGACT+TGG | 0.497785 | tig0016540:+33646 | Msa1358840:CDS |
| AACAACCGAGCAGTGGTTTG+AGG | 0.500335 | tig0016540:-33734 | None:intergenic |
| GGGATGCAGGAGTTCTGACT+TGG | 0.501279 | tig0016540:+31395 | Msa1358840:intron |
| GTATGGCGATGATGACTTCA+AGG | 0.503138 | tig0016540:+30881 | Msa1358840:CDS |
| GGGGTCTACGCTTTGACGAA+GGG | 0.503971 | tig0016540:-30058 | None:intergenic |
| CAGGAGGATTGATATGATTG+AGG | 0.507601 | tig0016540:+33604 | Msa1358840:intron |
| GTGAAGCGATTTGACATTGT+CGG | 0.511317 | tig0016540:+31450 | Msa1358840:CDS |
| CAAAATGTCCAGGGAAAAGT+AGG | 0.512608 | tig0016540:+31701 | Msa1358840:intron |
| AGCTGCTTGAGATAAAGTTC+TGG | 0.514028 | tig0016540:-33132 | None:intergenic |
| AAACCCCAACCGCCAGTTGG+TGG | 0.516970 | tig0016540:-34726 | None:intergenic |
| ACAACCGAGCAGTGGTTTGA+GGG | 0.518422 | tig0016540:-33733 | None:intergenic |
| AAGACACAGAAACATCTTCA+AGG | 0.518887 | tig0016540:-30716 | None:intergenic |
| TAAAACCAGACCAAACCATT+CGG | 0.519859 | tig0016540:-29828 | None:intergenic |
| CGTAGTGAACTCAGGATTGT+GGG | 0.520747 | tig0016540:-33223 | None:intergenic |
| AGAACTTTATCTCAAGCAGC+TGG | 0.526651 | tig0016540:+33134 | Msa1358840:CDS |
| AACAGAGAATTTGTGTGGAT+AGG | 0.528591 | tig0016540:-30634 | None:intergenic |
| CGAGTTACTTACAGTATTCG+CGG | 0.530285 | tig0016540:-30334 | None:intergenic |
| ACAATTCAAAACGTTCGGTC+AGG | 0.532125 | tig0016540:-34176 | None:intergenic |
| TGGGGTCTACGCTTTGACGA+AGG | 0.533736 | tig0016540:-30059 | None:intergenic |
| GCATAAAATATGCAATGTCT+GGG | 0.541767 | tig0016540:-29916 | None:intergenic |
| CCAAGAAATCACGGTCATCA+AGG | 0.544842 | tig0016540:-32922 | None:intergenic |
| ATTGTTGCAAATATGTCAGA+AGG | 0.545666 | tig0016540:+30603 | Msa1358840:CDS |
| GTTATGTAATTACTCCAAGT+AGG | 0.545929 | tig0016540:+35226 | Msa1358840:three_prime_UTR |
| CTTTGCACCTGAAGTGCGTA+TGG | 0.545950 | tig0016540:-30841 | None:intergenic |
| GATGCAACATCAAATCCAAA+TGG | 0.546459 | tig0016540:-32841 | None:intergenic |
| TAGGGAAATCAATGGGTACC+AGG | 0.548143 | tig0016540:+31919 | Msa1358840:intron |
| TTAGCTGAAGGTACATCTTG+AGG | 0.550400 | tig0016540:-34908 | None:intergenic |
| TATCAAGGGTTAATAAGCAA+TGG | 0.550622 | tig0016540:+30687 | Msa1358840:CDS |
| GCTCTGTGCGACTTGGCCAA+AGG | 0.551396 | tig0016540:-34144 | None:intergenic |
| TCAAGCAGCTGGTTATTGGT+GGG | 0.555894 | tig0016540:+33145 | Msa1358840:CDS |
| GTATGCCACCAACTGGCGGT+TGG | 0.559429 | tig0016540:+34721 | Msa1358840:CDS |
| AGGTCATAGTAATCCGCAAA+CGG | 0.562291 | tig0016540:-33261 | None:intergenic |
| TGAGTTCTATATGCCGTTTG+CGG | 0.563867 | tig0016540:+33248 | Msa1358840:CDS |
| TTATCTGTAGGGAAATCAAT+GGG | 0.564495 | tig0016540:+31912 | Msa1358840:intron |
| CAGGAGTTCTGACTTGGATG+TGG | 0.565232 | tig0016540:+31401 | Msa1358840:intron |
| AATGGGTACCAGGAAGTACC+AGG | 0.565872 | tig0016540:+31929 | Msa1358840:CDS |
| CTCTACATAGATAGAGAGAA+GGG | 0.568049 | tig0016540:+30171 | Msa1358840:five_prime_UTR |
| TTCGTCGGAGCCTATACCTC+CGG | 0.568400 | tig0016540:+30308 | Msa1358840:CDS |
| GAGGAACTAGAGAGTATGGC+AGG | 0.570470 | tig0016540:+33623 | Msa1358840:CDS |
| TGTCCAGGGAAAAGTAGGAC+AGG | 0.571761 | tig0016540:+31706 | Msa1358840:intron |
| CATATTAGGATCGGCAATCG+GGG | 0.574030 | tig0016540:+34646 | Msa1358840:intron |
| TATACACAGATTGTTGACTT+GGG | 0.580664 | tig0016540:-30142 | None:intergenic |
| CCCAAACCCCAACCGCCAGT+TGG | 0.580695 | tig0016540:-34729 | None:intergenic |
| TCCATTACCAACCAAATCAA+AGG | 0.583127 | tig0016540:-30276 | None:intergenic |
| AAGTCGCACAGAGCAAAACC+AGG | 0.586814 | tig0016540:+34153 | Msa1358840:CDS |
| AACAAAAGGTTTCTACCTTG+GGG | 0.589245 | tig0016540:-30077 | None:intergenic |
| GAGATTTGCTCAACAACTCA+AGG | 0.591967 | tig0016540:+34367 | Msa1358840:CDS |
| AATGGAAGCTACTACTTCGT+CGG | 0.592260 | tig0016540:+30293 | Msa1358840:exon |
| AACTCACACGTAGTGAACTC+AGG | 0.593455 | tig0016540:-33231 | None:intergenic |
| TATACTTAAGCCTGTTCTCA+CGG | 0.594709 | tig0016540:-30581 | None:intergenic |
| ATTCAACCGATTAAACCGAA+TGG | 0.595612 | tig0016540:+29813 | Msa1358840:five_prime_UTR |
| TGCGGATTACTATGACCTGA+TGG | 0.598373 | tig0016540:+33266 | Msa1358840:CDS |
| GGGTCTACGCTTTGACGAAG+GGG | 0.598959 | tig0016540:-30057 | None:intergenic |
| ACGTAGTGAACTCAGGATTG+TGG | 0.602745 | tig0016540:-33224 | None:intergenic |
| ACTCTACATAGATAGAGAGA+AGG | 0.603039 | tig0016540:+30170 | Msa1358840:five_prime_UTR |
| GGAGTGAAGTCTATTTCGAT+AGG | 0.608418 | tig0016540:-33484 | None:intergenic |
| CAACCGAGCAGTGGTTTGAG+GGG | 0.610155 | tig0016540:-33732 | None:intergenic |
| ATTGAGAATCAAATAAACAG+TGG | 0.610196 | tig0016540:+35131 | Msa1358840:three_prime_UTR |
| AACAAACCTCCAAGAAATCA+CGG | 0.611443 | tig0016540:-32931 | None:intergenic |
| AGAAGATATCATCGACCCAA+AGG | 0.612145 | tig0016540:+30454 | Msa1358840:CDS |
| ACAGTATTCGCGGTTGCCGG+AGG | 0.612564 | tig0016540:-30324 | None:intergenic |
| AATACATTGATACATATCAA+GGG | 0.612680 | tig0016540:+30673 | Msa1358840:CDS |
| ATATTGATTAGCTTCCTCAC+TGG | 0.615270 | tig0016540:-33669 | None:intergenic |
| GGCAGGACTTAGTATTCCAA+AGG | 0.618859 | tig0016540:+33640 | Msa1358840:CDS |
| TCCAAAGGACTTGGCCAGTG+AGG | 0.621171 | tig0016540:+33655 | Msa1358840:CDS |
| TCCAGATTATGGCTGATGCA+AGG | 0.622344 | tig0016540:+30904 | Msa1358840:CDS |
| AAGTTTACACTGCACCTGAA+GGG | 0.626239 | tig0016540:-33508 | None:intergenic |
| TTGTTGCAAATATGTCAGAA+GGG | 0.626506 | tig0016540:+30604 | Msa1358840:CDS |
| ATAGAAACAGAGAATTTGTG+TGG | 0.634714 | tig0016540:-30639 | None:intergenic |
| TTTATCCAACAACCGAGCAG+TGG | 0.636466 | tig0016540:-33741 | None:intergenic |
| CATCAAATTTGCATTATCGG+CGG | 0.641339 | tig0016540:-31812 | None:intergenic |
| ACAGAACTATAAAATTCTTG+GGG | 0.642759 | tig0016540:-31744 | None:intergenic |
| TGAAGCGATGGCCTTAGACG+AGG | 0.643931 | tig0016540:+34674 | Msa1358840:CDS |
| TCATTCAAATGGAGTTGACA+AGG | 0.648922 | tig0016540:+33459 | Msa1358840:CDS |
| TTTACACTGCACCTGAAGGG+TGG | 0.653330 | tig0016540:-33505 | None:intergenic |
| ATGATGATCAAGATTGCCGG+TGG | 0.655443 | tig0016540:+33042 | Msa1358840:CDS |
| AACCGAGCAGTGGTTTGAGG+GGG | 0.655651 | tig0016540:-33731 | None:intergenic |
| AAGTGCGTATGGCCTTAACT+CGG | 0.656149 | tig0016540:-30830 | None:intergenic |
| ATATCTTCTTCATCATCAGG+TGG | 0.657071 | tig0016540:-30440 | None:intergenic |
| ATTGTCCATACCAACTCATG+AGG | 0.659835 | tig0016540:+29939 | Msa1358840:five_prime_UTR |
| ATTACCAACCAAATCAAAGG+AGG | 0.671530 | tig0016540:-30273 | None:intergenic |
| CCAAAGGACTCATTATTTCG+GGG | 0.676230 | tig0016540:-34128 | None:intergenic |
| TATGGTATGCCACCAACTGG+CGG | 0.678899 | tig0016540:+34717 | Msa1358840:CDS |
| GCACAAAGCATCTGAAAACG+AGG | 0.682780 | tig0016540:-35272 | None:intergenic |
| ATATTAGGATCGGCAATCGG+GGG | 0.693029 | tig0016540:+34647 | Msa1358840:intron |
| GAGGACAAAGCAACTAAACA+GGG | 0.704089 | tig0016540:-30254 | None:intergenic |
| ATAACAGAGGAAATGTTGAG+CGG | 0.717216 | tig0016540:+33291 | Msa1358840:CDS |
| TGACCTGATGGAGATAACAG+AGG | 0.722590 | tig0016540:+33278 | Msa1358840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTGTTTTTTTTTG+TGG | + | tig0016540:29878-29897 | Msa1358840:five_prime_UTR | 10.0% |
| !! | AATATAATACAAAAAACAAA+AGG | - | tig0016540:30094-30113 | None:intergenic | 10.0% |
| !! | AGAAAAATAAAATAATTCAT+TGG | + | tig0016540:33871-33890 | Msa1358840:intron | 10.0% |
| !! | TCTATTTATAATACAATATT+AGG | + | tig0016540:35331-35350 | Msa1358840:three_prime_UTR | 10.0% |
| !! | TTTACGAAAAAATATCTTAA+GGG | - | tig0016540:30022-30041 | None:intergenic | 15.0% |
| !!! | TTTTACGAAAAAATATCTTA+AGG | - | tig0016540:30023-30042 | None:intergenic | 15.0% |
| !! | ATAATTTACAAAAACACAAA+GGG | - | tig0016540:31026-31045 | None:intergenic | 15.0% |
| !! | AATAATTTACAAAAACACAA+AGG | - | tig0016540:31027-31046 | None:intergenic | 15.0% |
| !!! | ATACATTTTATACAACATAA+TGG | - | tig0016540:31056-31075 | None:intergenic | 15.0% |
| !! | GTTGTATAAAATGTATAAAA+TGG | + | tig0016540:31060-31079 | Msa1358840:intron | 15.0% |
| !! | ACAACTAAATATAAATTAAG+AGG | + | tig0016540:31153-31172 | Msa1358840:intron | 15.0% |
| !! | TTAAAAAAAGAAATGGAATA+GGG | - | tig0016540:31331-31350 | None:intergenic | 15.0% |
| !! | ATTAAAAAAAGAAATGGAAT+AGG | - | tig0016540:31332-31351 | None:intergenic | 15.0% |
| !!! | AAAATTTAAAATGATAGGAT+AGG | - | tig0016540:31613-31632 | None:intergenic | 15.0% |
| !! | TTATTTCATTAATTATCTGT+AGG | + | tig0016540:31900-31919 | Msa1358840:intron | 15.0% |
| !! | TATTTCATTAATTATCTGTA+GGG | + | tig0016540:31901-31920 | Msa1358840:intron | 15.0% |
| !! | CTAGAAAATAAGATAATATA+GGG | - | tig0016540:32035-32054 | None:intergenic | 15.0% |
| !! | TTGAAAATAAAGCATATTAT+AGG | - | tig0016540:33794-33813 | None:intergenic | 15.0% |
| !! | TAGTAAAAAAGTTAAGATAT+TGG | + | tig0016540:33927-33946 | Msa1358840:intron | 15.0% |
| !!! | TTTGTAAATTCTTACATTTT+TGG | + | tig0016540:34837-34856 | Msa1358840:intron | 15.0% |
| !! | ATCTAAATAAACATAAAAGA+AGG | - | tig0016540:34958-34977 | None:intergenic | 15.0% |
| !! | TAAATTATTTACATGCAATT+TGG | - | tig0016540:35094-35113 | None:intergenic | 15.0% |
| !! | AAATTGCATGTAAATAATTT+AGG | + | tig0016540:35093-35112 | Msa1358840:three_prime_UTR | 15.0% |
| !!! | AAAATTGTTTTTTTTTGTGG+CGG | + | tig0016540:29881-29900 | Msa1358840:five_prime_UTR | 20.0% |
| !! | AATACATTGATACATATCAA+GGG | + | tig0016540:30673-30692 | Msa1358840:CDS | 20.0% |
| !! | AAAATTGTTGAAATAGAAAC+CGG | - | tig0016540:30759-30778 | None:intergenic | 20.0% |
| !! | ACACGAAATTTACATAAAAA+TGG | + | tig0016540:30997-31016 | Msa1358840:intron | 20.0% |
| !! | ACTAAATATAAATTAAGAGG+TGG | + | tig0016540:31156-31175 | Msa1358840:intron | 20.0% |
| !! | AATAATTAGTACTTGCAATA+AGG | + | tig0016540:31633-31652 | Msa1358840:intron | 20.0% |
| !! | CCTAGAAAATAAGATAATAT+AGG | - | tig0016540:32036-32055 | None:intergenic | 20.0% |
| !!! | CCTATATTATCTTATTTTCT+AGG | + | tig0016540:32033-32052 | Msa1358840:intron | 20.0% |
| !!! | CAATAACTTTCTTTTTTTCA+AGG | - | tig0016540:32250-32269 | None:intergenic | 20.0% |
| !!! | AGAAATTAATTTGCAAACTT+TGG | - | tig0016540:32391-32410 | None:intergenic | 20.0% |
| !!! | TACAACTCATTATCTTTTAT+AGG | + | tig0016540:32799-32818 | Msa1358840:intron | 20.0% |
| !! | GTAGAATAGTTAAATACATT+CGG | + | tig0016540:32894-32913 | Msa1358840:CDS | 20.0% |
| !! | AAAATCCAATATCATTCAAA+TGG | + | tig0016540:33448-33467 | Msa1358840:CDS | 20.0% |
| !! | AGTTAAGATATTGGATTAAA+AGG | + | tig0016540:33936-33955 | Msa1358840:intron | 20.0% |
| !!! | TCTCTTCTGATTTTATTTTA+AGG | + | tig0016540:34421-34440 | Msa1358840:intron | 20.0% |
| !!! | CTCTTCTGATTTTATTTTAA+GGG | + | tig0016540:34422-34441 | Msa1358840:intron | 20.0% |
| !! | TATGTAGAAAAGATTTACAT+TGG | - | tig0016540:34456-34475 | None:intergenic | 20.0% |
| !! | CTATTATGCATTAAAGAAAA+TGG | - | tig0016540:34600-34619 | None:intergenic | 20.0% |
| !! | TGCATAATAGAATAACTAAT+TGG | + | tig0016540:34610-34629 | Msa1358840:intron | 20.0% |
| !!! | TAGTTTTTTTCTTTTTTGAG+TGG | + | tig0016540:35173-35192 | Msa1358840:three_prime_UTR | 20.0% |
| !!! | TTTTTTTAATCCTCATGAGT+TGG | - | tig0016540:29952-29971 | None:intergenic | 25.0% |
| !!! | AATTTTATTTCGCTCTTCAT+AGG | + | tig0016540:30406-30425 | Msa1358840:intron | 25.0% |
| ! | CAATCATATACTATTATCGT+TGG | + | tig0016540:30506-30525 | Msa1358840:intron | 25.0% |
| ! | TTAACTTATGTCGATGAATT+TGG | - | tig0016540:30532-30551 | None:intergenic | 25.0% |
| ! | CAATACATTGATACATATCA+AGG | + | tig0016540:30672-30691 | Msa1358840:CDS | 25.0% |
| !! | GATTTATATTTTCCCTTTAC+TGG | - | tig0016540:30960-30979 | None:intergenic | 25.0% |
| ! | GTAAAGGGAAAATATAAATC+TGG | + | tig0016540:30960-30979 | Msa1358840:intron | 25.0% |
| ! | AACATTAAGGTAAGATAAGA+AGG | - | tig0016540:31215-31234 | None:intergenic | 25.0% |
| ! | ACAAAGTTAGTCAAACATTA+AGG | - | tig0016540:31228-31247 | None:intergenic | 25.0% |
| ! | TAATGTTTGACTAACTTTGT+AGG | + | tig0016540:31228-31247 | Msa1358840:intron | 25.0% |
| ! | ACTAAAACAAGTTATATCTC+TGG | + | tig0016540:31374-31393 | Msa1358840:intron | 25.0% |
| ! | CTAAAACAAGTTATATCTCT+GGG | + | tig0016540:31375-31394 | Msa1358840:intron | 25.0% |
| !!! | TCTTATTTTATTTCCCTTCT+TGG | + | tig0016540:31544-31563 | Msa1358840:intron | 25.0% |
| !!! | CTTATTTTATTTCCCTTCTT+GGG | + | tig0016540:31545-31564 | Msa1358840:intron | 25.0% |
| ! | ACAGAACTATAAAATTCTTG+GGG | - | tig0016540:31747-31766 | None:intergenic | 25.0% |
| ! | GACAGAACTATAAAATTCTT+GGG | - | tig0016540:31748-31767 | None:intergenic | 25.0% |
| ! | AGACAGAACTATAAAATTCT+TGG | - | tig0016540:31749-31768 | None:intergenic | 25.0% |
| !!! | TCCTGAAACATATATTTTGA+AGG | + | tig0016540:31954-31973 | Msa1358840:CDS | 25.0% |
| ! | TCCTTCAAAATATATGTTTC+AGG | - | tig0016540:31958-31977 | None:intergenic | 25.0% |
| !!! | AACATATATTTTGAAGGATC+AGG | + | tig0016540:31960-31979 | Msa1358840:CDS | 25.0% |
| ! | AGCAATGAAAGAAAATATCA+AGG | - | tig0016540:32006-32025 | None:intergenic | 25.0% |
| ! | TCAAGCAGATGATAATTAAA+TGG | + | tig0016540:32064-32083 | Msa1358840:intron | 25.0% |
| !! | TGCAATATATCTTCCATTTT+TGG | + | tig0016540:32126-32145 | Msa1358840:intron | 25.0% |
| !!! | AATATATCTTCCATTTTTGG+TGG | + | tig0016540:32129-32148 | Msa1358840:intron | 25.0% |
| ! | TAAGCATATAGACGTATTTA+AGG | + | tig0016540:32284-32303 | Msa1358840:intron | 25.0% |
| ! | AAGCATATAGACGTATTTAA+GGG | + | tig0016540:32285-32304 | Msa1358840:intron | 25.0% |
| ! | TGGAAAACAGAAATTGAAAA+CGG | - | tig0016540:32371-32390 | None:intergenic | 25.0% |
| !! | TGATTGGTTAAAATTCACAT+GGG | - | tig0016540:32670-32689 | None:intergenic | 25.0% |
| !! | TTGATTGGTTAAAATTCACA+TGG | - | tig0016540:32671-32690 | None:intergenic | 25.0% |
| ! | TAGTGAAAAGAAAAGGTAAA+TGG | - | tig0016540:33003-33022 | None:intergenic | 25.0% |
| ! | AGTATATAGAAATGAGAGTA+TGG | + | tig0016540:33194-33213 | Msa1358840:CDS | 25.0% |
| ! | TTGTAGTTAATCTCAATATG+CGG | + | tig0016540:33379-33398 | Msa1358840:intron | 25.0% |
| ! | ATTGTTTACCAACTTACAAA+TGG | + | tig0016540:33418-33437 | Msa1358840:CDS | 25.0% |
| !!! | TTCTTTTTTTATCCAAAAGC+AGG | + | tig0016540:33816-33835 | Msa1358840:intron | 25.0% |
| ! | TCAATTTCAACAATGGAAAA+GGG | - | tig0016540:33849-33868 | None:intergenic | 25.0% |
| ! | TTTCTTCTCAATTTCAACAA+TGG | - | tig0016540:33856-33875 | None:intergenic | 25.0% |
| ! | GATAGAGTAAAATATCAGAT+CGG | - | tig0016540:33966-33985 | None:intergenic | 25.0% |
| ! | TCAAATGACTAAAATATCAG+TGG | - | tig0016540:34009-34028 | None:intergenic | 25.0% |
| ! | AGTCATTTGATTAATAAGCT+TGG | + | tig0016540:34019-34038 | Msa1358840:intron | 25.0% |
| ! | TGGAATTTGTATGCATTATT+AGG | - | tig0016540:34580-34599 | None:intergenic | 25.0% |
| !!! | TTACATTTTTGGTTCCTTTT+GGG | + | tig0016540:34848-34867 | Msa1358840:intron | 25.0% |
| ! | TAGATATATGTTTCTCATGT+TGG | + | tig0016540:34973-34992 | Msa1358840:intron | 25.0% |
| !!! | ACACAATTCAATTTTTTCCT+AGG | + | tig0016540:35009-35028 | Msa1358840:intron | 25.0% |
| ! | ATTGAGAATCAAATAAACAG+TGG | + | tig0016540:35131-35150 | Msa1358840:three_prime_UTR | 25.0% |
| !!! | TTTTTTTCTTTTTTGAGTGG+TGG | + | tig0016540:35176-35195 | Msa1358840:three_prime_UTR | 25.0% |
| !!! | TGGTCTGGTTTTAATTACAT+TGG | + | tig0016540:29838-29857 | Msa1358840:five_prime_UTR | 30.0% |
| GCATAAAATATGCAATGTCT+GGG | - | tig0016540:29919-29938 | None:intergenic | 30.0% | |
| TGCATAAAATATGCAATGTC+TGG | - | tig0016540:29920-29939 | None:intergenic | 30.0% | |
| AAACAAAAGGTTTCTACCTT+GGG | - | tig0016540:30081-30100 | None:intergenic | 30.0% | |
| AAAACAAAAGGTTTCTACCT+TGG | - | tig0016540:30082-30101 | None:intergenic | 30.0% | |
| !! | TATACACAGATTGTTGACTT+GGG | - | tig0016540:30145-30164 | None:intergenic | 30.0% |
| ! | TTATACACAGATTGTTGACT+TGG | - | tig0016540:30146-30165 | None:intergenic | 30.0% |
| ATGATATCTTCTTCATCATC+AGG | - | tig0016540:30446-30465 | None:intergenic | 30.0% | |
| ATTGTTGCAAATATGTCAGA+AGG | + | tig0016540:30603-30622 | Msa1358840:CDS | 30.0% | |
| TTGTTGCAAATATGTCAGAA+GGG | + | tig0016540:30604-30623 | Msa1358840:CDS | 30.0% | |
| ATAGAAACAGAGAATTTGTG+TGG | - | tig0016540:30642-30661 | None:intergenic | 30.0% | |
| TATCAAGGGTTAATAAGCAA+TGG | + | tig0016540:30687-30706 | Msa1358840:CDS | 30.0% | |
| TATCTGTCTTTCTGTGTATT+AGG | + | tig0016540:30807-30826 | Msa1358840:intron | 30.0% | |
| ! | CTTGTCTTTTATGACATGTA+TGG | + | tig0016540:30864-30883 | Msa1358840:CDS | 30.0% |
| AGGTAAGATAAGAAGGAAAA+GGG | - | tig0016540:31208-31227 | None:intergenic | 30.0% | |
| AAGGTAAGATAAGAAGGAAA+AGG | - | tig0016540:31209-31228 | None:intergenic | 30.0% | |
| CACCATCAAATTTGCATTAT+CGG | - | tig0016540:31818-31837 | None:intergenic | 30.0% | |
| ATGGTGAACATAATTTCTCT+TGG | + | tig0016540:31832-31851 | Msa1358840:intron | 30.0% | |
| ATTATCTGTAGGGAAATCAA+TGG | + | tig0016540:31911-31930 | Msa1358840:intron | 30.0% | |
| TTATCTGTAGGGAAATCAAT+GGG | + | tig0016540:31912-31931 | Msa1358840:intron | 30.0% | |
| AATATATGTTTCAGGATTCC+TGG | - | tig0016540:31950-31969 | None:intergenic | 30.0% | |
| TTGATGTTTGAGCTTAAACT+AGG | + | tig0016540:32312-32331 | Msa1358840:intron | 30.0% | |
| ATTGTAGATAGATGAGTGAT+GGG | - | tig0016540:32518-32537 | None:intergenic | 30.0% | |
| TATTGTAGATAGATGAGTGA+TGG | - | tig0016540:32519-32538 | None:intergenic | 30.0% | |
| ! | TTGATTGGTTACAATTTCCA+TGG | + | tig0016540:32603-32622 | Msa1358840:intron | 30.0% |
| ACTGTTAATAGATGAGTGAT+GGG | - | tig0016540:32763-32782 | None:intergenic | 30.0% | |
| TACTGTTAATAGATGAGTGA+TGG | - | tig0016540:32764-32783 | None:intergenic | 30.0% | |
| TTGAATATTTCTCGAACTTC+TGG | - | tig0016540:32866-32885 | None:intergenic | 30.0% | |
| GGAAAGAAATTATAAGCAGA+TGG | - | tig0016540:32978-32997 | None:intergenic | 30.0% | |
| GAAAAGAAAAGGTAAATGGA+AGG | - | tig0016540:32999-33018 | None:intergenic | 30.0% | |
| CTGAAAGTAGTGAAAAGAAA+AGG | - | tig0016540:33010-33029 | None:intergenic | 30.0% | |
| ! | CTTTTCTTTTCACTACTTTC+AGG | + | tig0016540:33008-33027 | Msa1358840:intron | 30.0% |
| TCATTGTGATGAGTTACAAA+TGG | - | tig0016540:33081-33100 | None:intergenic | 30.0% | |
| ATATGCGGCAAATTTCAATT+AGG | + | tig0016540:33394-33413 | Msa1358840:intron | 30.0% | |
| TATAGCTTCCATTTGTAAGT+TGG | - | tig0016540:33429-33448 | None:intergenic | 30.0% | |
| CAACTCCATTTGAATGATAT+TGG | - | tig0016540:33456-33475 | None:intergenic | 30.0% | |
| AACTTGTCAGTCATCAATTA+TGG | + | tig0016540:33526-33545 | Msa1358840:intron | 30.0% | |
| TGTATTCTTCTTATCGTTAC+AGG | + | tig0016540:33585-33604 | Msa1358840:intron | 30.0% | |
| ! | TGTACAATCTGTTTCTTTGT+TGG | + | tig0016540:33768-33787 | Msa1358840:intron | 30.0% |
| CAATTTCAACAATGGAAAAG+GGG | - | tig0016540:33848-33867 | None:intergenic | 30.0% | |
| CTCAATTTCAACAATGGAAA+AGG | - | tig0016540:33850-33869 | None:intergenic | 30.0% | |
| TGACTAAAATATCAGTGGAA+CGG | - | tig0016540:34004-34023 | None:intergenic | 30.0% | |
| GACAAACAATTCAAAACGTT+CGG | - | tig0016540:34184-34203 | None:intergenic | 30.0% | |
| GAAGTAAGTTAATGAAACTC+TGG | + | tig0016540:34213-34232 | Msa1358840:intron | 30.0% | |
| GTAACAAGAAAAGTAACAAC+AGG | - | tig0016540:34293-34312 | None:intergenic | 30.0% | |
| ATATCATAGAGTGGTTTGAT+TGG | - | tig0016540:34484-34503 | None:intergenic | 30.0% | |
| AGCAAATTGATATCATAGAG+TGG | - | tig0016540:34493-34512 | None:intergenic | 30.0% | |
| !!! | CTTACATTTTTGGTTCCTTT+TGG | + | tig0016540:34847-34866 | Msa1358840:intron | 30.0% |
| CAATAAAAACCTTTAGCTGA+AGG | - | tig0016540:34923-34942 | None:intergenic | 30.0% | |
| TAGGGAAAAATATTAAGCCT+AGG | - | tig0016540:35029-35048 | None:intergenic | 30.0% | |
| !!! | TTTTTCCCTACATTGATTTC+AGG | + | tig0016540:35039-35058 | Msa1358840:intron | 30.0% |
| AAGTTCCTGAAATCAATGTA+GGG | - | tig0016540:35047-35066 | None:intergenic | 30.0% | |
| GTTATGTAATTACTCCAAGT+AGG | + | tig0016540:35226-35245 | Msa1358840:three_prime_UTR | 30.0% | |
| ATTCAACCGATTAAACCGAA+TGG | + | tig0016540:29813-29832 | Msa1358840:five_prime_UTR | 35.0% | |
| ACCAAACCATTCGGTTTAAT+CGG | - | tig0016540:29822-29841 | None:intergenic | 35.0% | |
| TAAAACCAGACCAAACCATT+CGG | - | tig0016540:29831-29850 | None:intergenic | 35.0% | |
| !! | TTAATCCTCATGAGTTGGTA+TGG | - | tig0016540:29947-29966 | None:intergenic | 35.0% |
| AACAAAAGGTTTCTACCTTG+GGG | - | tig0016540:30080-30099 | None:intergenic | 35.0% | |
| ACTCTACATAGATAGAGAGA+AGG | + | tig0016540:30170-30189 | Msa1358840:five_prime_UTR | 35.0% | |
| CTCTACATAGATAGAGAGAA+GGG | + | tig0016540:30171-30190 | Msa1358840:five_prime_UTR | 35.0% | |
| GGGAATTGAAGAAGATTTGA+AGG | + | tig0016540:30191-30210 | Msa1358840:five_prime_UTR | 35.0% | |
| ATTACCAACCAAATCAAAGG+AGG | - | tig0016540:30276-30295 | None:intergenic | 35.0% | |
| !! | TCCTTTGATTTGGTTGGTAA+TGG | + | tig0016540:30275-30294 | Msa1358840:exon | 35.0% |
| TCCATTACCAACCAAATCAA+AGG | - | tig0016540:30279-30298 | None:intergenic | 35.0% | |
| TAGCATTAAGGTTCATCACA+TGG | + | tig0016540:30372-30391 | Msa1358840:intron | 35.0% | |
| ATATCTTCTTCATCATCAGG+TGG | - | tig0016540:30443-30462 | None:intergenic | 35.0% | |
| TATACTTAAGCCTGTTCTCA+CGG | - | tig0016540:30584-30603 | None:intergenic | 35.0% | |
| ACAGAGAATTTGTGTGGATA+GGG | - | tig0016540:30636-30655 | None:intergenic | 35.0% | |
| AACAGAGAATTTGTGTGGAT+AGG | - | tig0016540:30637-30656 | None:intergenic | 35.0% | |
| AAGACACAGAAACATCTTCA+AGG | - | tig0016540:30719-30738 | None:intergenic | 35.0% | |
| ! | TGAAGATGTTTCTGTGTCTT+TGG | + | tig0016540:30719-30738 | Msa1358840:CDS | 35.0% |
| ! | TATATTTTCCCTTTACTGGC+AGG | - | tig0016540:30956-30975 | None:intergenic | 35.0% |
| ACATAGTAACATCTCAAACC+TGG | - | tig0016540:31489-31508 | None:intergenic | 35.0% | |
| !! | ATTTCACTCCTCTAAAGTGA+AGG | + | tig0016540:31581-31600 | Msa1358840:intron | 35.0% |
| !! | TTTCACTCCTCTAAAGTGAA+GGG | + | tig0016540:31582-31601 | Msa1358840:intron | 35.0% |
| CATCAAATTTGCATTATCGG+CGG | - | tig0016540:31815-31834 | None:intergenic | 35.0% | |
| !!! | ATCTTCCATTTTTGGTGGTT+TGG | + | tig0016540:32134-32153 | Msa1358840:intron | 35.0% |
| !!! | TCTTCCATTTTTGGTGGTTT+GGG | + | tig0016540:32135-32154 | Msa1358840:intron | 35.0% |
| ATGAGAGAAAATGCCTACTT+CGG | - | tig0016540:32190-32209 | None:intergenic | 35.0% | |
| GATAATATCAAGCAAGTGCA+TGG | - | tig0016540:32338-32357 | None:intergenic | 35.0% | |
| AAGATTAGTGTTCTGATCTG+AGG | + | tig0016540:32456-32475 | Msa1358840:intron | 35.0% | |
| !! | TATAAATTTGGTGGGTTCCA+TGG | - | tig0016540:32623-32642 | None:intergenic | 35.0% |
| TGGAACCCACCAAATTTATA+TGG | + | tig0016540:32623-32642 | Msa1358840:intron | 35.0% | |
| GGAACCCACCAAATTTATAT+GGG | + | tig0016540:32624-32643 | Msa1358840:intron | 35.0% | |
| ATGTGGGTCCCATATAAATT+TGG | - | tig0016540:32635-32654 | None:intergenic | 35.0% | |
| TAACACACACTCTCTTTGAT+TGG | - | tig0016540:32686-32705 | None:intergenic | 35.0% | |
| GATGCAACATCAAATCCAAA+TGG | - | tig0016540:32733-32752 | None:intergenic | 35.0% | |
| GATGCAACATCAAATCCAAA+TGG | - | tig0016540:32733-32752 | None:intergenic | 35.0% | |
| AACAAACCTCCAAGAAATCA+CGG | - | tig0016540:32934-32953 | None:intergenic | 35.0% | |
| ATAACAGAGGAAATGTTGAG+CGG | + | tig0016540:33291-33310 | Msa1358840:CDS | 35.0% | |
| ATGTTGAGCGGTAAGAATTA+AGG | + | tig0016540:33303-33322 | Msa1358840:intron | 35.0% | |
| TCATTCAAATGGAGTTGACA+AGG | + | tig0016540:33459-33478 | Msa1358840:CDS | 35.0% | |
| ATTCTTCTTATCGTTACAGG+AGG | + | tig0016540:33588-33607 | Msa1358840:intron | 35.0% | |
| ACTTAGTATTCCAAAGGACT+TGG | + | tig0016540:33646-33665 | Msa1358840:CDS | 35.0% | |
| !! | ATATTGATTAGCTTCCTCAC+TGG | - | tig0016540:33672-33691 | None:intergenic | 35.0% |
| TTGATCATATTGCAGCTTGT+AGG | + | tig0016540:34057-34076 | Msa1358840:intron | 35.0% | |
| !!! | ATTTTTGGTTCCTTTTGGGT+TGG | + | tig0016540:34852-34871 | Msa1358840:intron | 35.0% |
| CAAGTTCCTGAAATCAATGT+AGG | - | tig0016540:35048-35067 | None:intergenic | 35.0% | |
| CTCCAAGTAGGATTAAGATT+AGG | + | tig0016540:35238-35257 | Msa1358840:three_prime_UTR | 35.0% | |
| CTCCTAATCTTAATCCTACT+TGG | - | tig0016540:35243-35262 | None:intergenic | 35.0% | |
| ACCGATTAAACCGAATGGTT+TGG | + | tig0016540:29818-29837 | Msa1358840:five_prime_UTR | 40.0% | |
| !! | TTAAACCGAATGGTTTGGTC+TGG | + | tig0016540:29823-29842 | Msa1358840:five_prime_UTR | 40.0% |
| ATTGTCCATACCAACTCATG+AGG | + | tig0016540:29939-29958 | Msa1358840:five_prime_UTR | 40.0% | |
| !!! | TTGACTTGGGAACCAAGTTT+TGG | - | tig0016540:30132-30151 | None:intergenic | 40.0% |
| GAGGACAAAGCAACTAAACA+GGG | - | tig0016540:30257-30276 | None:intergenic | 40.0% | |
| TGCTTTGTCCTCCTTTGATT+TGG | + | tig0016540:30265-30284 | Msa1358840:five_prime_UTR | 40.0% | |
| !! | TTGTCCTCCTTTGATTTGGT+TGG | + | tig0016540:30269-30288 | Msa1358840:five_prime_UTR | 40.0% |
| AATGGAAGCTACTACTTCGT+CGG | + | tig0016540:30293-30312 | Msa1358840:exon | 40.0% | |
| CGAGTTACTTACAGTATTCG+CGG | - | tig0016540:30337-30356 | None:intergenic | 40.0% | |
| AGAAGATATCATCGACCCAA+AGG | + | tig0016540:30454-30473 | Msa1358840:CDS | 40.0% | |
| ATATCATCGACCCAAAGGTA+TGG | + | tig0016540:30459-30478 | Msa1358840:intron | 40.0% | |
| ACATGTGTAGCCATACCTTT+GGG | - | tig0016540:30472-30491 | None:intergenic | 40.0% | |
| TGACTTCAAGGTCCAGATTA+TGG | + | tig0016540:30893-30912 | Msa1358840:CDS | 40.0% | |
| CTATAGTGAGATAGAGCTTG+CGG | + | tig0016540:31104-31123 | Msa1358840:intron | 40.0% | |
| !! | AAGTTATATCTCTGGGATGC+AGG | + | tig0016540:31382-31401 | Msa1358840:intron | 40.0% |
| GTGAAGCGATTTGACATTGT+CGG | + | tig0016540:31450-31469 | Msa1358840:CDS | 40.0% | |
| !! | TTCACTCCTCTAAAGTGAAG+GGG | + | tig0016540:31583-31602 | Msa1358840:intron | 40.0% |
| !! | CATTTTGACAAGGGAACAAC+AGG | - | tig0016540:31688-31707 | None:intergenic | 40.0% |
| TTCCCTTGTCAAAATGTCCA+GGG | + | tig0016540:31692-31711 | Msa1358840:intron | 40.0% | |
| !! | TTCCCTGGACATTTTGACAA+GGG | - | tig0016540:31697-31716 | None:intergenic | 40.0% |
| !! | TTTCCCTGGACATTTTGACA+AGG | - | tig0016540:31698-31717 | None:intergenic | 40.0% |
| CAAAATGTCCAGGGAAAAGT+AGG | + | tig0016540:31701-31720 | Msa1358840:intron | 40.0% | |
| CGCCGATAATGCAAATTTGA+TGG | + | tig0016540:31813-31832 | Msa1358840:CDS | 40.0% | |
| !!! | CTTCCATTTTTGGTGGTTTG+GGG | + | tig0016540:32136-32155 | Msa1358840:intron | 40.0% |
| AGATTGAGATAGACCGAAGT+AGG | + | tig0016540:32174-32193 | Msa1358840:intron | 40.0% | |
| ! | CAAAGAGTGTGTGCTGAAAA+GGG | - | tig0016540:32586-32605 | None:intergenic | 40.0% |
| ! | TCAAAGAGTGTGTGCTGAAA+AGG | - | tig0016540:32587-32606 | None:intergenic | 40.0% |
| TTCAGCACACACTCTTTGAT+TGG | + | tig0016540:32588-32607 | Msa1358840:intron | 40.0% | |
| GGGTCCCATATAAATTTGGT+GGG | - | tig0016540:32631-32650 | None:intergenic | 40.0% | |
| TGGGTCCCATATAAATTTGG+TGG | - | tig0016540:32632-32651 | None:intergenic | 40.0% | |
| TATATGGGACCCACATGATT+TGG | + | tig0016540:32639-32658 | Msa1358840:intron | 40.0% | |
| AGCATTTCGTTCATGCCATT+TGG | + | tig0016540:32715-32734 | Msa1358840:intron | 40.0% | |
| AAGATATCGTTCACGCCATT+TGG | + | tig0016540:32826-32845 | Msa1358840:CDS | 40.0% | |
| CCTATGATGATCAAGATTGC+CGG | + | tig0016540:33039-33058 | Msa1358840:CDS | 40.0% | |
| AGCTGCTTGAGATAAAGTTC+TGG | - | tig0016540:33135-33154 | None:intergenic | 40.0% | |
| AGAACTTTATCTCAAGCAGC+TGG | + | tig0016540:33134-33153 | Msa1358840:CDS | 40.0% | |
| TATCTCAAGCAGCTGGTTAT+TGG | + | tig0016540:33141-33160 | Msa1358840:CDS | 40.0% | |
| CTGGGTCGTGTTTATGAAAT+CGG | + | tig0016540:33168-33187 | Msa1358840:CDS | 40.0% | |
| ! | TGAGTTCTATATGCCGTTTG+CGG | + | tig0016540:33248-33267 | Msa1358840:CDS | 40.0% |
| AGGTCATAGTAATCCGCAAA+CGG | - | tig0016540:33264-33283 | None:intergenic | 40.0% | |
| TTTCCTCTGTTATCTCCATC+AGG | - | tig0016540:33284-33303 | None:intergenic | 40.0% | |
| GGAGTGAAGTCTATTTCGAT+AGG | - | tig0016540:33487-33506 | None:intergenic | 40.0% | |
| AAGTTTACACTGCACCTGAA+GGG | - | tig0016540:33511-33530 | None:intergenic | 40.0% | |
| CAGGAGGATTGATATGATTG+AGG | + | tig0016540:33604-33623 | Msa1358840:intron | 40.0% | |
| GATTGAGGAACTAGAGAGTA+TGG | + | tig0016540:33619-33638 | Msa1358840:CDS | 40.0% | |
| CACACGTTTCTTCCAAAAAG+TGG | - | tig0016540:34083-34102 | None:intergenic | 40.0% | |
| GGGTGATTCATGATGAATGT+AGG | - | tig0016540:34111-34130 | None:intergenic | 40.0% | |
| CCAAAGGACTCATTATTTCG+GGG | - | tig0016540:34131-34150 | None:intergenic | 40.0% | |
| GCCAAAGGACTCATTATTTC+GGG | - | tig0016540:34132-34151 | None:intergenic | 40.0% | |
| GGCCAAAGGACTCATTATTT+CGG | - | tig0016540:34133-34152 | None:intergenic | 40.0% | |
| ACAATTCAAAACGTTCGGTC+AGG | - | tig0016540:34179-34198 | None:intergenic | 40.0% | |
| ! | GAGATTTGCTCAACAACTCA+AGG | + | tig0016540:34367-34386 | Msa1358840:CDS | 40.0% |
| GTCTACGTTTCCTGCATATT+AGG | + | tig0016540:34632-34651 | Msa1358840:intron | 40.0% | |
| CGTTTCCTGCATATTAGGAT+CGG | + | tig0016540:34637-34656 | Msa1358840:intron | 40.0% | |
| TGCATATTAGGATCGGCAAT+CGG | + | tig0016540:34644-34663 | Msa1358840:intron | 40.0% | |
| AGTGCAAAATTCCTCGTCTA+AGG | - | tig0016540:34688-34707 | None:intergenic | 40.0% | |
| !!! | TTTTGCACTGCTTTGGAGTA+TGG | + | tig0016540:34699-34718 | Msa1358840:CDS | 40.0% |
| AGGTACATCTTGAGGTTTCA+TGG | - | tig0016540:34903-34922 | None:intergenic | 40.0% | |
| ! | TTAGCTGAAGGTACATCTTG+AGG | - | tig0016540:34911-34930 | None:intergenic | 40.0% |
| CAAGATGTACCTTCAGCTAA+AGG | + | tig0016540:34911-34930 | Msa1358840:CDS | 40.0% | |
| ! | GTTTTCAGATGCTTTGTGCT+TGG | + | tig0016540:35276-35295 | Msa1358840:three_prime_UTR | 40.0% |
| !!! | GTTTTTTTTTGTGGCGGTCG+AGG | + | tig0016540:29887-29906 | Msa1358840:five_prime_UTR | 45.0% |
| !!! | TTGGGAACCAAGTTTTGGCT+GGG | - | tig0016540:30127-30146 | None:intergenic | 45.0% |
| GGAGGACAAAGCAACTAAAC+AGG | - | tig0016540:30258-30277 | None:intergenic | 45.0% | |
| CACTCTCTCTCGTAGCATTA+AGG | + | tig0016540:30360-30379 | Msa1358840:intron | 45.0% | |
| CACATGTGTAGCCATACCTT+TGG | - | tig0016540:30473-30492 | None:intergenic | 45.0% | |
| ! | GATGTTTCTGTGTCTTTGGC+TGG | + | tig0016540:30723-30742 | Msa1358840:CDS | 45.0% |
| CTGTGTATTAGGCCGAGTTA+AGG | + | tig0016540:30818-30837 | Msa1358840:intron | 45.0% | |
| ! | AAGTGCGTATGGCCTTAACT+CGG | - | tig0016540:30833-30852 | None:intergenic | 45.0% |
| GTATGGCGATGATGACTTCA+AGG | + | tig0016540:30881-30900 | Msa1358840:CDS | 45.0% | |
| TCCAGATTATGGCTGATGCA+AGG | + | tig0016540:30904-30923 | Msa1358840:CDS | 45.0% | |
| ACCTTGCATCAGCCATAATC+TGG | - | tig0016540:30908-30927 | None:intergenic | 45.0% | |
| TGACCTTACCTGCCAGTAAA+GGG | + | tig0016540:30945-30964 | Msa1358840:intron | 45.0% | |
| TTTCCCTTTACTGGCAGGTA+AGG | - | tig0016540:30951-30970 | None:intergenic | 45.0% | |
| GGAATAGGGTCTACAGAAGA+AGG | - | tig0016540:31317-31336 | None:intergenic | 45.0% | |
| !! | TTTGACATTGTCGGTGTCAC+TGG | + | tig0016540:31459-31478 | Msa1358840:CDS | 45.0% |
| CAAGAAAGACAGCCCAAGAA+GGG | - | tig0016540:31560-31579 | None:intergenic | 45.0% | |
| !! | TCACTCCTCTAAAGTGAAGG+GGG | + | tig0016540:31584-31603 | Msa1358840:intron | 45.0% |
| GTTCCCTTGTCAAAATGTCC+AGG | + | tig0016540:31691-31710 | Msa1358840:intron | 45.0% | |
| TAGGGAAATCAATGGGTACC+AGG | + | tig0016540:31919-31938 | Msa1358840:intron | 45.0% | |
| ! | TCTGATCTGAGGTGTGAAGT+TGG | + | tig0016540:32467-32486 | Msa1358840:intron | 45.0% |
| !! | TAGATGAGTGATGGGTGATC+TGG | - | tig0016540:32755-32774 | None:intergenic | 45.0% |
| CCAAGAAATCACGGTCATCA+AGG | - | tig0016540:32925-32944 | None:intergenic | 45.0% | |
| ! | CCTTGATGACCGTGATTTCT+TGG | + | tig0016540:32922-32941 | Msa1358840:CDS | 45.0% |
| TGATGACCGTGATTTCTTGG+AGG | + | tig0016540:32925-32944 | Msa1358840:CDS | 45.0% | |
| CCGGCAATCTTGATCATCAT+AGG | - | tig0016540:33042-33061 | None:intergenic | 45.0% | |
| ATGATGATCAAGATTGCCGG+TGG | + | tig0016540:33042-33061 | Msa1358840:CDS | 45.0% | |
| TCAAGCAGCTGGTTATTGGT+GGG | + | tig0016540:33145-33164 | Msa1358840:CDS | 45.0% | |
| CGTAGTGAACTCAGGATTGT+GGG | - | tig0016540:33226-33245 | None:intergenic | 45.0% | |
| ACGTAGTGAACTCAGGATTG+TGG | - | tig0016540:33227-33246 | None:intergenic | 45.0% | |
| AACTCACACGTAGTGAACTC+AGG | - | tig0016540:33234-33253 | None:intergenic | 45.0% | |
| ! | TGCGGATTACTATGACCTGA+TGG | + | tig0016540:33266-33285 | Msa1358840:CDS | 45.0% |
| TGACCTGATGGAGATAACAG+AGG | + | tig0016540:33278-33297 | Msa1358840:CDS | 45.0% | |
| CAAGTTTACACTGCACCTGA+AGG | - | tig0016540:33512-33531 | None:intergenic | 45.0% | |
| GGCAGGACTTAGTATTCCAA+AGG | + | tig0016540:33640-33659 | Msa1358840:CDS | 45.0% | |
| TTTATCCAACAACCGAGCAG+TGG | - | tig0016540:33744-33763 | None:intergenic | 45.0% | |
| ! | AAGGGGTTACAACCTGCTTT+TGG | - | tig0016540:33831-33850 | None:intergenic | 45.0% |
| CCCCGAAATAATGAGTCCTT+TGG | + | tig0016540:34128-34147 | Msa1358840:CDS | 45.0% | |
| GATTGCCGATCCTAATATGC+AGG | - | tig0016540:34645-34664 | None:intergenic | 45.0% | |
| GCATATTAGGATCGGCAATC+GGG | + | tig0016540:34645-34664 | Msa1358840:intron | 45.0% | |
| CATATTAGGATCGGCAATCG+GGG | + | tig0016540:34646-34665 | Msa1358840:intron | 45.0% | |
| ATATTAGGATCGGCAATCGG+GGG | + | tig0016540:34647-34666 | Msa1358840:intron | 45.0% | |
| ! | CGAGGAATTTTGCACTGCTT+TGG | + | tig0016540:34692-34711 | Msa1358840:CDS | 45.0% |
| !! | GTTGGGGTTTGGGTATTGAT+AGG | + | tig0016540:34739-34758 | Msa1358840:CDS | 45.0% |
| ! | GCACAAAGCATCTGAAAACG+AGG | - | tig0016540:35275-35294 | None:intergenic | 45.0% |
| !! | AAAAAAATTAAAAAAAGAAA+TGG | - | tig0016540:31338-31357 | None:intergenic | 5.0% |
| !!! | TTATTAAAATTTAAAATGAT+AGG | - | tig0016540:31618-31637 | None:intergenic | 5.0% |
| !!! | TTATAAAATCTATTATATTT+TGG | + | tig0016540:33549-33568 | Msa1358840:intron | 5.0% |
| AACCTGCATCCGATCCAATC+TGG | - | tig0016540:29784-29803 | None:intergenic | 50.0% | |
| GATTGGATCGGATGCAGGTT+CGG | + | tig0016540:29784-29803 | Msa1358840:five_prime_UTR | 50.0% | |
| !!! | TGGGAACCAAGTTTTGGCTG+GGG | - | tig0016540:30126-30145 | None:intergenic | 50.0% |
| !! | CTTGGGAACCAAGTTTTGGC+TGG | - | tig0016540:30128-30147 | None:intergenic | 50.0% |
| CTTACAGTATTCGCGGTTGC+CGG | - | tig0016540:30330-30349 | None:intergenic | 50.0% | |
| TGTTCTCACGGTATTGCTGC+AGG | - | tig0016540:30572-30591 | None:intergenic | 50.0% | |
| TGCAGCAATACCGTGAGAAC+AGG | + | tig0016540:30571-30590 | Msa1358840:intron | 50.0% | |
| !! | TTTGGCTGGTTCGTAGTCTC+CGG | + | tig0016540:30737-30756 | Msa1358840:intron | 50.0% |
| GTTAAGGCCATACGCACTTC+AGG | + | tig0016540:30834-30853 | Msa1358840:CDS | 50.0% | |
| CTTTGCACCTGAAGTGCGTA+TGG | - | tig0016540:30844-30863 | None:intergenic | 50.0% | |
| CTGACCTTACCTGCCAGTAA+AGG | + | tig0016540:30944-30963 | Msa1358840:intron | 50.0% | |
| !! | CAGGAGTTCTGACTTGGATG+TGG | + | tig0016540:31401-31420 | Msa1358840:intron | 50.0% |
| CCAAGAAAGACAGCCCAAGA+AGG | - | tig0016540:31561-31580 | None:intergenic | 50.0% | |
| CCTTCTTGGGCTGTCTTTCT+TGG | + | tig0016540:31558-31577 | Msa1358840:intron | 50.0% | |
| TGTCCAGGGAAAAGTAGGAC+AGG | + | tig0016540:31706-31725 | Msa1358840:intron | 50.0% | |
| !! | TCTCCTGTCCTACTTTTCCC+TGG | - | tig0016540:31712-31731 | None:intergenic | 50.0% |
| ! | GCAGCAGCAGACTCTTGTTT+GGG | - | tig0016540:31790-31809 | None:intergenic | 50.0% |
| AGCAGCAGCAGACTCTTGTT+TGG | - | tig0016540:31791-31810 | None:intergenic | 50.0% | |
| !! | AATGGGTACCAGGAAGTACC+AGG | + | tig0016540:31929-31948 | Msa1358840:CDS | 50.0% |
| TCAGGATTCCTGGTACTTCC+TGG | - | tig0016540:31940-31959 | None:intergenic | 50.0% | |
| ACGCCCCAAACCACCAAAAA+TGG | - | tig0016540:32142-32161 | None:intergenic | 50.0% | |
| ! | ATGGGACCCACATGATTTGG+TGG | + | tig0016540:32642-32661 | Msa1358840:intron | 50.0% |
| !! | TGGGACCCACATGATTTGGT+GGG | + | tig0016540:32643-32662 | Msa1358840:intron | 50.0% |
| TGGGTCCCACCAAATCATGT+GGG | - | tig0016540:32651-32670 | None:intergenic | 50.0% | |
| ATGGGTCCCACCAAATCATG+TGG | - | tig0016540:32652-32671 | None:intergenic | 50.0% | |
| GCAGATGGCGTCAGAATACT+TGG | - | tig0016540:32963-32982 | None:intergenic | 50.0% | |
| CTCAAGCAGCTGGTTATTGG+TGG | + | tig0016540:33144-33163 | Msa1358840:CDS | 50.0% | |
| TAGACTTCACTCCACCCTTC+AGG | + | tig0016540:33494-33513 | Msa1358840:CDS | 50.0% | |
| TTTACACTGCACCTGAAGGG+TGG | - | tig0016540:33508-33527 | None:intergenic | 50.0% | |
| ! | GAGGAACTAGAGAGTATGGC+AGG | + | tig0016540:33623-33642 | Msa1358840:CDS | 50.0% |
| ACAACCGAGCAGTGGTTTGA+GGG | - | tig0016540:33736-33755 | None:intergenic | 50.0% | |
| AACAACCGAGCAGTGGTTTG+AGG | - | tig0016540:33737-33756 | None:intergenic | 50.0% | |
| TCAAACCACTGCTCGGTTGT+TGG | + | tig0016540:33736-33755 | Msa1358840:CDS | 50.0% | |
| !!! | GCAGCTTGTAGGCCACTTTT+TGG | + | tig0016540:34068-34087 | Msa1358840:intron | 50.0% |
| !! | TGGTTTTGCTCTGTGCGACT+TGG | - | tig0016540:34154-34173 | None:intergenic | 50.0% |
| AAGTCGCACAGAGCAAAACC+AGG | + | tig0016540:34153-34172 | Msa1358840:CDS | 50.0% | |
| AATCTCTGACGCTGCACAAC+AGG | - | tig0016540:34353-34372 | None:intergenic | 50.0% | |
| GAGTATGGTATGCCACCAAC+TGG | + | tig0016540:34714-34733 | Msa1358840:CDS | 50.0% | |
| TATGGTATGCCACCAACTGG+CGG | + | tig0016540:34717-34736 | Msa1358840:CDS | 50.0% | |
| !!! | GTTCCTTTTGGGTTGGTCAC+AGG | + | tig0016540:34859-34878 | Msa1358840:intron | 50.0% |
| CTTCCTGTGACCAACCCAAA+AGG | - | tig0016540:34865-34884 | None:intergenic | 50.0% | |
| GGGTCTACGCTTTGACGAAG+GGG | - | tig0016540:30060-30079 | None:intergenic | 55.0% | |
| GGGGTCTACGCTTTGACGAA+GGG | - | tig0016540:30061-30080 | None:intergenic | 55.0% | |
| TGGGGTCTACGCTTTGACGA+AGG | - | tig0016540:30062-30081 | None:intergenic | 55.0% | |
| TCGTCAAAGCGTAGACCCCA+AGG | + | tig0016540:30062-30081 | Msa1358840:five_prime_UTR | 55.0% | |
| !!! | CCAAGTTTTGGCTGGGGAGT+GGG | - | tig0016540:30120-30139 | None:intergenic | 55.0% |
| !!! | ACCAAGTTTTGGCTGGGGAG+TGG | - | tig0016540:30121-30140 | None:intergenic | 55.0% |
| TTCGTCGGAGCCTATACCTC+CGG | + | tig0016540:30308-30327 | Msa1358840:CDS | 55.0% | |
| ! | GGGATGCAGGAGTTCTGACT+TGG | + | tig0016540:31395-31414 | Msa1358840:intron | 55.0% |
| !! | GTCGGTGTCACTGGATTTCC+AGG | + | tig0016540:31468-31487 | Msa1358840:CDS | 55.0% |
| GGACACCCCCTTCACTTTAG+AGG | - | tig0016540:31592-31611 | None:intergenic | 55.0% | |
| !! | CAGCTGGTTATTGGTGGGCT+GGG | + | tig0016540:33150-33169 | Msa1358840:CDS | 55.0% |
| TCCAAAGGACTTGGCCAGTG+AGG | + | tig0016540:33655-33674 | Msa1358840:CDS | 55.0% | |
| TCCTCACTGGCCAAGTCCTT+TGG | - | tig0016540:33659-33678 | None:intergenic | 55.0% | |
| AACCGAGCAGTGGTTTGAGG+GGG | - | tig0016540:33734-33753 | None:intergenic | 55.0% | |
| CAACCGAGCAGTGGTTTGAG+GGG | - | tig0016540:33735-33754 | None:intergenic | 55.0% | |
| TCAAAACGTTCGGTCAGGCC+TGG | - | tig0016540:34174-34193 | None:intergenic | 55.0% | |
| ATCGGGGGATGATGAAGCGA+TGG | + | tig0016540:34662-34681 | Msa1358840:CDS | 55.0% | |
| ! | TGAAGCGATGGCCTTAGACG+AGG | + | tig0016540:34674-34693 | Msa1358840:CDS | 55.0% |
| TATGCCACCAACTGGCGGTT+GGG | + | tig0016540:34722-34741 | Msa1358840:CDS | 55.0% | |
| CCCACTCCCCAGCCAAAACT+TGG | + | tig0016540:30117-30136 | Msa1358840:five_prime_UTR | 60.0% | |
| ! | TTCGCGGTTGCCGGAGGTAT+AGG | - | tig0016540:30321-30340 | None:intergenic | 60.0% |
| ACAGTATTCGCGGTTGCCGG+AGG | - | tig0016540:30327-30346 | None:intergenic | 60.0% | |
| ! | GCAGCTGGTTATTGGTGGGC+TGG | + | tig0016540:33149-33168 | Msa1358840:CDS | 60.0% |
| CTCCCCCTCAAACCACTGCT+CGG | + | tig0016540:33729-33748 | Msa1358840:CDS | 60.0% | |
| ! | GCTCTGTGCGACTTGGCCAA+AGG | - | tig0016540:34147-34166 | None:intergenic | 60.0% |
| GTATGCCACCAACTGGCGGT+TGG | + | tig0016540:34721-34740 | Msa1358840:CDS | 60.0% | |
| ATGCCACCAACTGGCGGTTG+GGG | + | tig0016540:34723-34742 | Msa1358840:CDS | 60.0% | |
| AAACCCCAACCGCCAGTTGG+TGG | - | tig0016540:34729-34748 | None:intergenic | 60.0% | |
| ACCAACTGGCGGTTGGGGTT+TGG | + | tig0016540:34728-34747 | Msa1358840:CDS | 60.0% | |
| CCAACTGGCGGTTGGGGTTT+GGG | + | tig0016540:34729-34748 | Msa1358840:CDS | 60.0% | |
| TGGACGAGCTGCTGCTCCAC+CGG | - | tig0016540:33061-33080 | None:intergenic | 65.0% | |
| CCCAAACCCCAACCGCCAGT+TGG | - | tig0016540:34732-34751 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016540 | gene | 29780 | 35363 | 29780 | ID=Msa1358840;Name=Msa1358840 |
| tig0016540 | mRNA | 29780 | 35363 | 29780 | ID=Msa1358840-mRNA-1;Parent=Msa1358840;Name=Msa1358840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=514|1|1|1|1|1|16|295|571 |
| tig0016540 | exon | 29780 | 30344 | 29780 | ID=Msa1358840-mRNA-1:exon:11032;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 30428 | 30475 | 30428 | ID=Msa1358840-mRNA-1:exon:11033;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 30576 | 30744 | 30576 | ID=Msa1358840-mRNA-1:exon:11034;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 30829 | 30925 | 30829 | ID=Msa1358840-mRNA-1:exon:11035;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 31404 | 31489 | 31404 | ID=Msa1358840-mRNA-1:exon:11036;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 31713 | 31834 | 31713 | ID=Msa1358840-mRNA-1:exon:11037;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 31922 | 31981 | 31922 | ID=Msa1358840-mRNA-1:exon:11038;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 32821 | 32946 | 32821 | ID=Msa1358840-mRNA-1:exon:11039;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 33030 | 33312 | 33030 | ID=Msa1358840-mRNA-1:exon:11040;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 33416 | 33515 | 33416 | ID=Msa1358840-mRNA-1:exon:11041;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 33607 | 33763 | 33607 | ID=Msa1358840-mRNA-1:exon:11042;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 34072 | 34215 | 34072 | ID=Msa1358840-mRNA-1:exon:11043;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 34320 | 34388 | 34320 | ID=Msa1358840-mRNA-1:exon:11044;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 34654 | 34797 | 34654 | ID=Msa1358840-mRNA-1:exon:11045;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 34881 | 34932 | 34881 | ID=Msa1358840-mRNA-1:exon:11046;Parent=Msa1358840-mRNA-1 |
| tig0016540 | exon | 35061 | 35363 | 35061 | ID=Msa1358840-mRNA-1:exon:11047;Parent=Msa1358840-mRNA-1 |
| tig0016540 | five_prime_UTR | 29780 | 30293 | 29780 | ID=Msa1358840-mRNA-1:five_prime_utr;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 30294 | 30344 | 30294 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 30428 | 30475 | 30428 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 30576 | 30744 | 30576 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 30829 | 30925 | 30829 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 31404 | 31489 | 31404 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 31713 | 31834 | 31713 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 31922 | 31981 | 31922 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 32821 | 32946 | 32821 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 33030 | 33312 | 33030 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 33416 | 33515 | 33416 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 33607 | 33763 | 33607 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 34072 | 34215 | 34072 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 34320 | 34388 | 34320 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 34654 | 34797 | 34654 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 34881 | 34932 | 34881 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | CDS | 35061 | 35068 | 35061 | ID=Msa1358840-mRNA-1:cds;Parent=Msa1358840-mRNA-1 |
| tig0016540 | three_prime_UTR | 35069 | 35363 | 35069 | ID=Msa1358840-mRNA-1:three_prime_utr;Parent=Msa1358840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
