Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456130 | XP_028781209.1 | 78.766 | 551 | 112 | 4 | 14 | 564 | 50 | 595 | 0.0 | 920 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456130 | sp|Q9ZPI1|SYKC_ARATH | 70.304 | 559 | 152 | 7 | 11 | 568 | 70 | 615 | 0.0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456130 | A0A445HG96 | 80.000 | 545 | 104 | 4 | 20 | 564 | 60 | 599 | 0.0 | 917 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1349300 | Msa1456130 | 0.814081 | 1.847147e-51 | -8.615850e-47 |
| Msa1358840 | Msa1456130 | 0.945318 | 3.822731e-104 | -8.615850e-47 |
| Msa1394060 | Msa1456130 | -0.801067 | 1.072240e-48 | -8.615850e-47 |
| Msa1447470 | Msa1456130 | 0.987147 | 3.197144e-169 | -8.615850e-47 |
| Msa0694810 | Msa1456130 | -0.809292 | 2.034144e-50 | -8.615850e-47 |
| Msa0268530 | Msa1456130 | -0.801413 | 9.110808e-49 | -8.615850e-47 |
| Msa0335050 | Msa1456130 | 0.819661 | 1.033187e-52 | -8.615850e-47 |
| Msa0527950 | Msa1456130 | 0.801174 | 1.019564e-48 | -8.615850e-47 |
| Msa0931160 | Msa1456130 | -0.802288 | 6.023792e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456130 | MtrunA17_Chr2g0298001 | 76.937 | 555 | 117 | 5 | 13 | 567 | 54 | 597 | 0.0 | 879 |
| Msa1456130 | MtrunA17_Chr4g0072181 | 95.467 | 375 | 16 | 1 | 174 | 547 | 1 | 375 | 0.0 | 737 |
| Msa1456130 | MtrunA17_Chr4g0072161 | 76.271 | 413 | 90 | 3 | 97 | 508 | 5 | 410 | 0.0 | 634 |
| Msa1456130 | MtrunA17_Chr4g0072141 | 86.875 | 320 | 42 | 0 | 252 | 571 | 1 | 320 | 0.0 | 594 |
| Msa1456130 | MtrunA17_Chr8g0335841 | 35.599 | 559 | 294 | 12 | 31 | 563 | 59 | 577 | 7.80e-104 | 324 |
| Msa1456130 | MtrunA17_Chr4g0072151 | 69.832 | 179 | 46 | 4 | 34 | 211 | 30 | 201 | 6.27e-71 | 228 |
| Msa1456130 | MtrunA17_Chr1g0150111 | 23.625 | 491 | 318 | 15 | 79 | 557 | 87 | 532 | 8.94e-23 | 102 |
| Msa1456130 | MtrunA17_Chr2g0308881 | 64.789 | 71 | 23 | 1 | 482 | 552 | 16 | 84 | 4.13e-22 | 91.7 |
| Msa1456130 | MtrunA17_Chr4g0072171 | 67.308 | 52 | 17 | 0 | 422 | 473 | 3 | 54 | 1.74e-17 | 76.6 |
| Msa1456130 | MtrunA17_Chr8g0391331 | 26.389 | 144 | 104 | 2 | 211 | 353 | 197 | 339 | 1.67e-12 | 70.5 |
| Msa1456130 | MtrunA17_Chr4g0025921 | 27.891 | 147 | 102 | 3 | 210 | 353 | 182 | 327 | 2.24e-12 | 69.7 |
| Msa1456130 | MtrunA17_Chr4g0067881 | 25.694 | 144 | 105 | 2 | 211 | 353 | 195 | 337 | 5.19e-12 | 68.6 |
| Msa1456130 | MtrunA17_Chr4g0025931 | 27.397 | 146 | 102 | 3 | 211 | 353 | 169 | 313 | 2.14e-11 | 66.6 |
| Msa1456130 | MtrunA17_Chr1g0211491 | 26.389 | 144 | 104 | 2 | 211 | 353 | 152 | 294 | 8.59e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456130 | AT3G11710.1 | 70.304 | 559 | 152 | 7 | 11 | 568 | 70 | 615 | 0.0 | 823 |
| Msa1456130 | AT3G13490.1 | 36.348 | 564 | 286 | 14 | 31 | 563 | 80 | 601 | 2.16e-101 | 319 |
| Msa1456130 | AT3G30805.1 | 79.245 | 53 | 11 | 0 | 505 | 557 | 71 | 123 | 9.73e-24 | 98.6 |
| Msa1456130 | AT4G26870.1 | 23.647 | 499 | 317 | 15 | 78 | 557 | 70 | 523 | 1.09e-20 | 96.3 |
| Msa1456130 | AT4G31180.1 | 22.466 | 592 | 376 | 22 | 5 | 557 | 2 | 549 | 7.08e-19 | 90.5 |
| Msa1456130 | AT4G31180.2 | 22.466 | 592 | 376 | 22 | 5 | 557 | 2 | 549 | 7.08e-19 | 90.5 |
| Msa1456130 | AT4G33760.1 | 27.211 | 147 | 105 | 2 | 208 | 353 | 196 | 341 | 1.83e-12 | 70.5 |
| Msa1456130 | AT4G33760.2 | 27.211 | 147 | 105 | 2 | 208 | 353 | 60 | 205 | 1.95e-12 | 70.1 |
Find 170 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTTATAATACAATATT+AGG | 0.163928 | tig0036903:+14777 | Msa1456130:three_prime_UTR |
| GCCAAAGGACTCATTATTTC+GGG | 0.196107 | tig0036903:-13590 | Msa1456130:intergenic |
| CAACTCCATTTGAATGATAT+TGG | 0.196418 | tig0036903:-12914 | Msa1456130:intergenic |
| TCCTTCAAAATATATGTTTC+AGG | 0.196607 | tig0036903:-11416 | Msa1456130:intergenic |
| CCAACTGGCGGTTGGGGTTT+GGG | 0.215630 | tig0036903:+14175 | Msa1456130:CDS |
| AAATTGCATGTAAATAATTT+AGG | 0.217907 | tig0036903:+14539 | Msa1456130:three_prime_UTR |
| ACCAACTGGCGGTTGGGGTT+TGG | 0.224391 | tig0036903:+14174 | Msa1456130:CDS |
| TTGAATATTTCTCGAACTTC+TGG | 0.228444 | tig0036903:-12324 | Msa1456130:intergenic |
| TAAATTATTTACATGCAATT+TGG | 0.233312 | tig0036903:-14537 | Msa1456130:intergenic |
| TGAAGATGTTTCTGTGTCTT+TGG | 0.264568 | tig0036903:+10188 | Msa1456130:CDS |
| CACCATCAAATTTGCATTAT+CGG | 0.265417 | tig0036903:-11276 | Msa1456130:intergenic |
| CCTTGATGACCGTGATTTCT+TGG | 0.266714 | tig0036903:+12383 | Msa1456130:CDS |
| TATCTCAAGCAGCTGGTTAT+TGG | 0.271777 | tig0036903:+12602 | Msa1456130:CDS |
| GGCCAAAGGACTCATTATTT+CGG | 0.289952 | tig0036903:-13591 | Msa1456130:intergenic |
| TCAGGATTCCTGGTACTTCC+TGG | 0.304810 | tig0036903:-11398 | Msa1456130:intergenic |
| GTCGGTGTCACTGGATTTCC+AGG | 0.307527 | tig0036903:+10929 | Msa1456130:CDS |
| TGCTTTGTCCTCCTTTGATT+TGG | 0.317512 | tig0036903:+9734 | Msa1456130:five_prime_UTR |
| AAGATATCGTTCACGCCATT+TGG | 0.327737 | tig0036903:+12287 | Msa1456130:CDS |
| AGACAGAACTATAAAATTCT+TGG | 0.329623 | tig0036903:-11207 | Msa1456130:intergenic |
| GCAGCTGGTTATTGGTGGGC+TGG | 0.333137 | tig0036903:+12610 | Msa1456130:CDS |
| TCCTCACTGGCCAAGTCCTT+TGG | 0.335575 | tig0036903:-13117 | Msa1456130:intergenic |
| AGCAGCAGCAGACTCTTGTT+TGG | 0.336308 | tig0036903:-11249 | Msa1456130:intergenic |
| AAACAAAAGGTTTCTACCTT+GGG | 0.345110 | tig0036903:-9547 | Msa1456130:intergenic |
| TATGCCACCAACTGGCGGTT+GGG | 0.346260 | tig0036903:+14168 | Msa1456130:CDS |
| GATGTTTCTGTGTCTTTGGC+TGG | 0.346939 | tig0036903:+10192 | Msa1456130:CDS |
| AATATATGTTTCAGGATTCC+TGG | 0.356980 | tig0036903:-11408 | Msa1456130:intergenic |
| TCCTTTGATTTGGTTGGTAA+TGG | 0.357585 | tig0036903:+9744 | Msa1456130:exon |
| AGTGCAAAATTCCTCGTCTA+AGG | 0.358905 | tig0036903:-14131 | Msa1456130:intergenic |
| TGACTCCAAGGTCCAGATTA+TGG | 0.365653 | tig0036903:+10362 | Msa1456130:CDS |
| CTTACAGTATTCGCGGTTGC+CGG | 0.369036 | tig0036903:-9796 | Msa1456130:intergenic |
| TTGACTTGGGAACCAAGTTT+TGG | 0.376470 | tig0036903:-9598 | Msa1456130:intergenic |
| GTTGGGGTTTGGGTATTGAT+AGG | 0.380474 | tig0036903:+14185 | Msa1456130:CDS |
| ACCTTGCATCAGCCATAATC+TGG | 0.381672 | tig0036903:-10374 | Msa1456130:intergenic |
| AATCTCTGACGCTGCACAAC+AGG | 0.381681 | tig0036903:-13796 | Msa1456130:intergenic |
| AGGTACATCTTGAGGTTTCA+TGG | 0.381888 | tig0036903:-14346 | Msa1456130:intergenic |
| GATTGAGGAACTAGAGAGTA+TGG | 0.382971 | tig0036903:+13080 | Msa1456130:CDS |
| GACAGAACTATAAAATTCTT+GGG | 0.388826 | tig0036903:-11206 | Msa1456130:intergenic |
| GCAGCAGCAGACTCTTGTTT+GGG | 0.392009 | tig0036903:-11248 | Msa1456130:intergenic |
| GGAGGACAAAGCAACTAAAC+AGG | 0.392257 | tig0036903:-9724 | Msa1456130:intergenic |
| AGTATATAGAAATGAGAGTA+TGG | 0.401531 | tig0036903:+12655 | Msa1456130:CDS |
| CCCACTCCCCAGCCAAAACT+TGG | 0.403560 | tig0036903:+9586 | Msa1456130:five_prime_UTR |
| GTTAAGGCCATACGCACTTC+AGG | 0.404660 | tig0036903:+10303 | Msa1456130:CDS |
| TGCATATTAGGATCGGCAAT+CGG | 0.407222 | tig0036903:+14090 | Msa1456130:intron |
| TTTGACATTGTCGGTGTCAC+TGG | 0.407314 | tig0036903:+10920 | Msa1456130:CDS |
| GCATATTAGGATCGGCAATC+GGG | 0.409258 | tig0036903:+14091 | Msa1456130:intron |
| CTCCTAATCTTAATCCTACT+TGG | 0.413171 | tig0036903:-14686 | Msa1456130:intergenic |
| TAGACTTCACTCCACCCTTC+AGG | 0.413847 | tig0036903:+12955 | Msa1456130:CDS |
| GACAAACAATTCAAAACGTT+CGG | 0.414822 | tig0036903:-13642 | Msa1456130:intergenic |
| TCAAACCACTGCTCGGTTGT+TGG | 0.419167 | tig0036903:+13197 | Msa1456130:CDS |
| GGGAATTGAAGAAGATTTGA+AGG | 0.420265 | tig0036903:+9660 | Msa1456130:five_prime_UTR |
| TTGATCATATTGCAGCTTGT+AGG | 0.421852 | tig0036903:+13518 | Msa1456130:intron |
| AAAACAAAAGGTTTCTACCT+TGG | 0.429636 | tig0036903:-9548 | Msa1456130:intergenic |
| ATGATATCTTCTTCATCATC+AGG | 0.430923 | tig0036903:-9912 | Msa1456130:intergenic |
| CTCAAGCAGCTGGTTATTGG+TGG | 0.432009 | tig0036903:+12605 | Msa1456130:CDS |
| AAAATCCAATATCATTCAAA+TGG | 0.432612 | tig0036903:+12909 | Msa1456130:CDS |
| CAGCTGGTTATTGGTGGGCT+GGG | 0.434162 | tig0036903:+12611 | Msa1456130:CDS |
| TATAGCTTCCATTTGTAAGT+TGG | 0.436164 | tig0036903:-12887 | Msa1456130:intergenic |
| CGCCGATAATGCAAATTTGA+TGG | 0.437048 | tig0036903:+11274 | Msa1456130:CDS |
| CTGGGTCGTGTTTATGAAAT+CGG | 0.437305 | tig0036903:+12629 | Msa1456130:CDS |
| CAATACATTGATACATATCA+AGG | 0.438267 | tig0036903:+10141 | Msa1456130:CDS |
| CAAGATGTACCTTCAGCTAA+AGG | 0.438689 | tig0036903:+14357 | Msa1456130:CDS |
| ACAGAGAATTTGTGTGGATA+GGG | 0.441765 | tig0036903:-10102 | Msa1456130:intergenic |
| CTATGTATTAGGCCGAGTTA+AGG | 0.446189 | tig0036903:+10287 | Msa1456130:intron |
| CCTATGATGATCAAGATTGC+CGG | 0.452143 | tig0036903:+12500 | Msa1456130:CDS |
| TTGTCCTCCTTTGATTTGGT+TGG | 0.452587 | tig0036903:+9738 | Msa1456130:five_prime_UTR |
| ATTGTTTACCAACTTACAAA+TGG | 0.453702 | tig0036903:+12879 | Msa1456130:CDS |
| TTTCCTCTGTTATCTCCATC+AGG | 0.456139 | tig0036903:-12742 | Msa1456130:intergenic |
| CCGGCAATCTTGATCATCAT+AGG | 0.457344 | tig0036903:-12500 | Msa1456130:intergenic |
| TGCAGCAATACCGTGAGAAC+AGG | 0.459033 | tig0036903:+10040 | Msa1456130:intron |
| CTCCAAGTAGGATTAAGATT+AGG | 0.459586 | tig0036903:+14684 | Msa1456130:three_prime_UTR |
| CCCCGAAATAATGAGTCCTT+TGG | 0.462367 | tig0036903:+13589 | Msa1456130:CDS |
| ATGCCACCAACTGGCGGTTG+GGG | 0.472904 | tig0036903:+14169 | Msa1456130:CDS |
| TCAAAACGTTCGGTCAGGCC+TGG | 0.476366 | tig0036903:-13632 | Msa1456130:intergenic |
| TTATACACAGATTGTTGACT+TGG | 0.477707 | tig0036903:-9612 | Msa1456130:intergenic |
| GAGTATGGTATGCCACCAAC+TGG | 0.483125 | tig0036903:+14160 | Msa1456130:CDS |
| TGGACGAGCTGCTGCTCCAC+CGG | 0.485920 | tig0036903:-12519 | Msa1456130:intergenic |
| GTAGAATAGTTAAATACATT+CGG | 0.486909 | tig0036903:+12355 | Msa1456130:CDS |
| ATTATCTGTAGGGAAATCAA+TGG | 0.489576 | tig0036903:+11372 | Msa1456130:intron |
| GACTGATTCACAGAACATAA+AGG | 0.490806 | tig0036903:+14222 | Msa1456130:CDS |
| GGGTGATTCATGATGAATGT+AGG | 0.490979 | tig0036903:-13569 | Msa1456130:intergenic |
| TCATTGTGATGAGTTACAAA+TGG | 0.493670 | tig0036903:-12539 | Msa1456130:intergenic |
| TGATGACCGTGATTTCTTGG+AGG | 0.494735 | tig0036903:+12386 | Msa1456130:CDS |
| TTCGCGGTTGCCGGAGGTAT+AGG | 0.495918 | tig0036903:-9787 | Msa1456130:intergenic |
| ACTTAGTATTCCAAAGGACT+TGG | 0.497785 | tig0036903:+13107 | Msa1456130:CDS |
| AACAACCGAGCAGTGGTTTG+AGG | 0.500335 | tig0036903:-13195 | Msa1456130:intergenic |
| GGGATGCAGGAGTTCTGACT+TGG | 0.501279 | tig0036903:+10856 | Msa1456130:intron |
| CAGGAGGATTGATATGATTG+AGG | 0.507601 | tig0036903:+13065 | Msa1456130:intron |
| GTGAAGCGATTTGACATTGT+CGG | 0.511317 | tig0036903:+10911 | Msa1456130:CDS |
| CAAAATGTCCAGGGAAAAGT+AGG | 0.512608 | tig0036903:+11162 | Msa1456130:intron |
| AGCTGCTTGAGATAAAGTTC+TGG | 0.514028 | tig0036903:-12593 | Msa1456130:intergenic |
| AAACCCCAACCGCCAGTTGG+TGG | 0.516970 | tig0036903:-14172 | Msa1456130:intergenic |
| ACAACCGAGCAGTGGTTTGA+GGG | 0.518422 | tig0036903:-13194 | Msa1456130:intergenic |
| AAGACACAGAAACATCTTCA+AGG | 0.518887 | tig0036903:-10185 | Msa1456130:intergenic |
| CGTAGTGAACTCAGGATTGT+GGG | 0.520747 | tig0036903:-12684 | Msa1456130:intergenic |
| TGAGCATGACTCAGTTGGTA+TGG | 0.526647 | tig0036903:-9404 | Msa1456130:intergenic |
| AGAACTTTATCTCAAGCAGC+TGG | 0.526651 | tig0036903:+12595 | Msa1456130:CDS |
| AACAGAGAATTTGTGTGGAT+AGG | 0.528591 | tig0036903:-10103 | Msa1456130:intergenic |
| ATTGTTGTAAATATGTCAGA+AGG | 0.529670 | tig0036903:+10072 | Msa1456130:CDS |
| CGAGTTACTTACAGTATTCG+CGG | 0.530285 | tig0036903:-9803 | Msa1456130:intergenic |
| GGGGTCTACGCTTTGACGAA+GGG | 0.531411 | tig0036903:-9527 | Msa1456130:intergenic |
| ACAATTCAAAACGTTCGGTC+AGG | 0.532125 | tig0036903:-13637 | Msa1456130:intergenic |
| TGGGGTCTACGCTTTGACGA+AGG | 0.533736 | tig0036903:-9528 | Msa1456130:intergenic |
| CCAAGAAATCACGGTCATCA+AGG | 0.544842 | tig0036903:-12383 | Msa1456130:intergenic |
| GTTATGTAATTACTCCAAGT+AGG | 0.545929 | tig0036903:+14672 | Msa1456130:three_prime_UTR |
| CTTTGCACCTGAAGTGCGTA+TGG | 0.545950 | tig0036903:-10310 | Msa1456130:intergenic |
| GATGCAACATCAAATCCAAA+TGG | 0.546459 | tig0036903:-12302 | Msa1456130:intergenic |
| TAGGGAAATCAATGGGTACC+AGG | 0.548143 | tig0036903:+11380 | Msa1456130:intron |
| TTAGCTGAAGGTACATCTTG+AGG | 0.550400 | tig0036903:-14354 | Msa1456130:intergenic |
| TATCAAGGGTTAATAAGCAA+TGG | 0.550622 | tig0036903:+10156 | Msa1456130:CDS |
| GCTCTGTGCGACTTGGCCAA+AGG | 0.551396 | tig0036903:-13605 | Msa1456130:intergenic |
| TCAAGCAGCTGGTTATTGGT+GGG | 0.555894 | tig0036903:+12606 | Msa1456130:CDS |
| GTATGCCACCAACTGGCGGT+TGG | 0.559429 | tig0036903:+14167 | Msa1456130:CDS |
| AGGTCATAGTAATCCGCAAA+CGG | 0.562291 | tig0036903:-12722 | Msa1456130:intergenic |
| TGAGTTCTATATGCCGTTTG+CGG | 0.563867 | tig0036903:+12709 | Msa1456130:CDS |
| TTATCTGTAGGGAAATCAAT+GGG | 0.564495 | tig0036903:+11373 | Msa1456130:intron |
| CAGGAGTTCTGACTTGGATG+TGG | 0.565232 | tig0036903:+10862 | Msa1456130:intron |
| AATGGGTACCAGGAAGTACC+AGG | 0.565872 | tig0036903:+11390 | Msa1456130:CDS |
| CTCTACATAGATAGAGAGAA+GGG | 0.568049 | tig0036903:+9640 | Msa1456130:five_prime_UTR |
| TTCGTCGGAGCCTATACCTC+CGG | 0.568400 | tig0036903:+9777 | Msa1456130:CDS |
| GAGGAACTAGAGAGTATGGC+AGG | 0.570470 | tig0036903:+13084 | Msa1456130:CDS |
| TGTCCAGGGAAAAGTAGGAC+AGG | 0.571761 | tig0036903:+11167 | Msa1456130:intron |
| CATATTAGGATCGGCAATCG+GGG | 0.574030 | tig0036903:+14092 | Msa1456130:intron |
| TATACACAGATTGTTGACTT+GGG | 0.580664 | tig0036903:-9611 | Msa1456130:intergenic |
| CCCAAACCCCAACCGCCAGT+TGG | 0.580695 | tig0036903:-14175 | Msa1456130:intergenic |
| TCCATTACCAACCAAATCAA+AGG | 0.583127 | tig0036903:-9745 | Msa1456130:intergenic |
| ATCAGCCATAATCTGGACCT+TGG | 0.584667 | tig0036903:-10367 | Msa1456130:intergenic |
| CCTCGTGAGCATGACTCAGT+TGG | 0.586673 | tig0036903:-9409 | Msa1456130:intergenic |
| AAGTCGCACAGAGCAAAACC+AGG | 0.586814 | tig0036903:+13614 | Msa1456130:CDS |
| AACAAAAGGTTTCTACCTTG+GGG | 0.589245 | tig0036903:-9546 | Msa1456130:intergenic |
| TTGTTGTAAATATGTCAGAA+GGG | 0.589247 | tig0036903:+10073 | Msa1456130:CDS |
| GAGATTTGCTCAACAACTCA+AGG | 0.591967 | tig0036903:+13813 | Msa1456130:CDS |
| AATGGAAGCTACTACTTCGT+CGG | 0.592260 | tig0036903:+9762 | Msa1456130:exon |
| AACTCACACGTAGTGAACTC+AGG | 0.593455 | tig0036903:-12692 | Msa1456130:intergenic |
| TATACTTAAGCCTGTTCTCA+CGG | 0.594709 | tig0036903:-10050 | Msa1456130:intergenic |
| TGCGGATTACTATGACCTGA+TGG | 0.598373 | tig0036903:+12727 | Msa1456130:CDS |
| ACGTAGTGAACTCAGGATTG+TGG | 0.602745 | tig0036903:-12685 | Msa1456130:intergenic |
| ACTCTACATAGATAGAGAGA+AGG | 0.603039 | tig0036903:+9639 | Msa1456130:five_prime_UTR |
| GGAGTGAAGTCTATTTCGAT+AGG | 0.608418 | tig0036903:-12945 | Msa1456130:intergenic |
| CAACCGAGCAGTGGTTTGAG+GGG | 0.610155 | tig0036903:-13193 | Msa1456130:intergenic |
| ATTGAGAATCAAATAAACAG+TGG | 0.610196 | tig0036903:+14577 | Msa1456130:three_prime_UTR |
| AACAAACCTCCAAGAAATCA+CGG | 0.611443 | tig0036903:-12392 | Msa1456130:intergenic |
| AGAAGATATCATCGACCCAA+AGG | 0.612145 | tig0036903:+9923 | Msa1456130:CDS |
| ACAGTATTCGCGGTTGCCGG+AGG | 0.612564 | tig0036903:-9793 | Msa1456130:intergenic |
| AATACATTGATACATATCAA+GGG | 0.612680 | tig0036903:+10142 | Msa1456130:CDS |
| ATATTGATTAGCTTCCTCAC+TGG | 0.615270 | tig0036903:-13130 | Msa1456130:intergenic |
| GGCAGGACTTAGTATTCCAA+AGG | 0.618859 | tig0036903:+13101 | Msa1456130:CDS |
| TCCAAAGGACTTGGCCAGTG+AGG | 0.621171 | tig0036903:+13116 | Msa1456130:CDS |
| CCAACTGAGTCATGCTCACG+AGG | 0.621748 | tig0036903:+9409 | Msa1456130:five_prime_UTR |
| TCCAGATTATGGCTGATGCA+AGG | 0.622344 | tig0036903:+10373 | Msa1456130:CDS |
| AAGTTTACACTGCACCTGAA+GGG | 0.626239 | tig0036903:-12969 | Msa1456130:intergenic |
| GTATGGCGATGATGACTCCA+AGG | 0.633058 | tig0036903:+10350 | Msa1456130:CDS |
| ATAGAAACAGAGAATTTGTG+TGG | 0.634714 | tig0036903:-10108 | Msa1456130:intergenic |
| TTTATCCAACAACCGAGCAG+TGG | 0.636466 | tig0036903:-13202 | Msa1456130:intergenic |
| CATCAAATTTGCATTATCGG+CGG | 0.641339 | tig0036903:-11273 | Msa1456130:intergenic |
| ACAGAACTATAAAATTCTTG+GGG | 0.642759 | tig0036903:-11205 | Msa1456130:intergenic |
| TGAAGCGATGGCCTTAGACG+AGG | 0.643931 | tig0036903:+14120 | Msa1456130:CDS |
| TCATTCAAATGGAGTTGACA+AGG | 0.648922 | tig0036903:+12920 | Msa1456130:CDS |
| TTTACACTGCACCTGAAGGG+TGG | 0.653330 | tig0036903:-12966 | Msa1456130:intergenic |
| ATGATGATCAAGATTGCCGG+TGG | 0.655443 | tig0036903:+12503 | Msa1456130:CDS |
| AACCGAGCAGTGGTTTGAGG+GGG | 0.655651 | tig0036903:-13192 | Msa1456130:intergenic |
| AAGTGCGTATGGCCTTAACT+CGG | 0.656149 | tig0036903:-10299 | Msa1456130:intergenic |
| ATATCTTCTTCATCATCAGG+TGG | 0.657071 | tig0036903:-9909 | Msa1456130:intergenic |
| ATTACCAACCAAATCAAAGG+AGG | 0.671530 | tig0036903:-9742 | Msa1456130:intergenic |
| CCAAAGGACTCATTATTTCG+GGG | 0.676230 | tig0036903:-13589 | Msa1456130:intergenic |
| TATGGTATGCCACCAACTGG+CGG | 0.678899 | tig0036903:+14163 | Msa1456130:CDS |
| GCACAAAGCATCTGAAAACG+AGG | 0.682780 | tig0036903:-14718 | Msa1456130:intergenic |
| ATATTAGGATCGGCAATCGG+GGG | 0.693029 | tig0036903:+14093 | Msa1456130:intron |
| GAGGACAAAGCAACTAAACA+GGG | 0.704089 | tig0036903:-9723 | Msa1456130:intergenic |
| ATAACAGAGGAAATGTTGAG+CGG | 0.717216 | tig0036903:+12752 | Msa1456130:CDS |
| TGACCTGATGGAGATAACAG+AGG | 0.722590 | tig0036903:+12739 | Msa1456130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAATACAAAAAACAAA+AGG | - | tig0036903:9563-9582 | Msa1456130:intergenic | 10.0% |
| !! | AGAAAAATAAAATAATTCAT+TGG | + | tig0036903:13332-13351 | Msa1456130:intron | 10.0% |
| !! | TCTATTTATAATACAATATT+AGG | + | tig0036903:14777-14796 | Msa1456130:three_prime_UTR | 10.0% |
| !! | TTTACGAAAAAATATCTTAA+GGG | - | tig0036903:9491-9510 | Msa1456130:intergenic | 15.0% |
| !!! | TTTTACGAAAAAATATCTTA+AGG | - | tig0036903:9492-9511 | Msa1456130:intergenic | 15.0% |
| !! | ATAATTTACAAAAACACAAA+GGG | - | tig0036903:10495-10514 | Msa1456130:intergenic | 15.0% |
| !! | AATAATTTACAAAAACACAA+AGG | - | tig0036903:10496-10515 | Msa1456130:intergenic | 15.0% |
| !! | ACAACTAAATATAAATTAAG+AGG | + | tig0036903:10613-10632 | Msa1456130:intron | 15.0% |
| !! | TTAAAAAAAGAAATGGAATA+GGG | - | tig0036903:10791-10810 | Msa1456130:intergenic | 15.0% |
| !! | ATTAAAAAAAGAAATGGAAT+AGG | - | tig0036903:10792-10811 | Msa1456130:intergenic | 15.0% |
| !!! | AAAATTTAAAATGATAGGAT+AGG | - | tig0036903:11074-11093 | Msa1456130:intergenic | 15.0% |
| !! | TTATTTCATTAATTATCTGT+AGG | + | tig0036903:11361-11380 | Msa1456130:intron | 15.0% |
| !! | TATTTCATTAATTATCTGTA+GGG | + | tig0036903:11362-11381 | Msa1456130:intron | 15.0% |
| !! | CTAGAAAATAAGATAATATA+GGG | - | tig0036903:11496-11515 | Msa1456130:intergenic | 15.0% |
| !! | TTGAAAATAAAGCATATTAT+AGG | - | tig0036903:13255-13274 | Msa1456130:intergenic | 15.0% |
| !! | TAGTAAAAAAGTTAAGATAT+TGG | + | tig0036903:13388-13407 | Msa1456130:intron | 15.0% |
| !!! | TTTGTAAATTCTTACATTTT+TGG | + | tig0036903:14283-14302 | Msa1456130:intron | 15.0% |
| !! | ATCTAAATAAACATAAAAGA+AGG | - | tig0036903:14404-14423 | Msa1456130:intergenic | 15.0% |
| !! | TAAATTATTTACATGCAATT+TGG | - | tig0036903:14540-14559 | Msa1456130:intergenic | 15.0% |
| !! | AAATTGCATGTAAATAATTT+AGG | + | tig0036903:14539-14558 | Msa1456130:three_prime_UTR | 15.0% |
| !! | AATACATTGATACATATCAA+GGG | + | tig0036903:10142-10161 | Msa1456130:CDS | 20.0% |
| !! | AAAATTGTTGAAATAGAAAC+CGG | - | tig0036903:10228-10247 | Msa1456130:intergenic | 20.0% |
| !! | TATTTGTCTTTCTATGTATT+AGG | + | tig0036903:10276-10295 | Msa1456130:intron | 20.0% |
| !! | ACACGAAATTTACATAAAAA+TGG | + | tig0036903:10466-10485 | Msa1456130:intron | 20.0% |
| !! | ATCCATTATGTTGTATAAAA+TGG | + | tig0036903:10520-10539 | Msa1456130:intron | 20.0% |
| !!! | TTCCATTTTATACAACATAA+TGG | - | tig0036903:10525-10544 | Msa1456130:intergenic | 20.0% |
| !! | ACTAAATATAAATTAAGAGG+TGG | + | tig0036903:10616-10635 | Msa1456130:intron | 20.0% |
| !! | AATAATTAGTACTTGCAATA+AGG | + | tig0036903:11094-11113 | Msa1456130:intron | 20.0% |
| !! | CCTAGAAAATAAGATAATAT+AGG | - | tig0036903:11497-11516 | Msa1456130:intergenic | 20.0% |
| !!! | CCTATATTATCTTATTTTCT+AGG | + | tig0036903:11494-11513 | Msa1456130:intron | 20.0% |
| !!! | CAATAACTTTCTTTTTTTCA+AGG | - | tig0036903:11711-11730 | Msa1456130:intergenic | 20.0% |
| !!! | AGAAATTAATTTGCAAACTT+TGG | - | tig0036903:11852-11871 | Msa1456130:intergenic | 20.0% |
| !!! | TACAACTCATTATCTTTTAT+AGG | + | tig0036903:12260-12279 | Msa1456130:intron | 20.0% |
| !! | GTAGAATAGTTAAATACATT+CGG | + | tig0036903:12355-12374 | Msa1456130:CDS | 20.0% |
| !! | AAAATCCAATATCATTCAAA+TGG | + | tig0036903:12909-12928 | Msa1456130:CDS | 20.0% |
| !! | AGTTAAGATATTGGATTAAA+AGG | + | tig0036903:13397-13416 | Msa1456130:intron | 20.0% |
| !!! | TCTCTTCTGATTTTATTTTA+AGG | + | tig0036903:13867-13886 | Msa1456130:intron | 20.0% |
| !!! | CTCTTCTGATTTTATTTTAA+GGG | + | tig0036903:13868-13887 | Msa1456130:intron | 20.0% |
| !!! | TGTAATTTGTATGCATTATT+AGG | - | tig0036903:14026-14045 | Msa1456130:intergenic | 20.0% |
| !! | TGCATAATAGAATAACTAAT+TGG | + | tig0036903:14056-14075 | Msa1456130:intron | 20.0% |
| !!! | TAGTTTTTTTCTTTTTTGAG+TGG | + | tig0036903:14619-14638 | Msa1456130:three_prime_UTR | 20.0% |
| !!! | AATTTTATTTCGCTCTTCAT+AGG | + | tig0036903:9875-9894 | Msa1456130:intron | 25.0% |
| ! | CAATCATATACTATTATCGT+TGG | + | tig0036903:9975-9994 | Msa1456130:intron | 25.0% |
| ! | TTAACTTATGTCGATGAATT+TGG | - | tig0036903:10001-10020 | Msa1456130:intergenic | 25.0% |
| ! | ATTGTTGTAAATATGTCAGA+AGG | + | tig0036903:10072-10091 | Msa1456130:CDS | 25.0% |
| ! | TTGTTGTAAATATGTCAGAA+GGG | + | tig0036903:10073-10092 | Msa1456130:CDS | 25.0% |
| ! | CAATACATTGATACATATCA+AGG | + | tig0036903:10141-10160 | Msa1456130:CDS | 25.0% |
| !! | GATTTATATTTTCCCTTTAC+TGG | - | tig0036903:10429-10448 | Msa1456130:intergenic | 25.0% |
| ! | GTAAAGGGAAAATATAAATC+TGG | + | tig0036903:10429-10448 | Msa1456130:intron | 25.0% |
| ! | AACATTAAGGTAAGATAAGA+AGG | - | tig0036903:10675-10694 | Msa1456130:intergenic | 25.0% |
| ! | ACAAAGTTAGTCAAACATTA+AGG | - | tig0036903:10688-10707 | Msa1456130:intergenic | 25.0% |
| ! | TAATGTTTGACTAACTTTGT+AGG | + | tig0036903:10688-10707 | Msa1456130:intron | 25.0% |
| ! | ACTAAAACAAGTTATATCTC+TGG | + | tig0036903:10835-10854 | Msa1456130:intron | 25.0% |
| ! | CTAAAACAAGTTATATCTCT+GGG | + | tig0036903:10836-10855 | Msa1456130:intron | 25.0% |
| !!! | TCTTATTTTATTTCCCTTCT+TGG | + | tig0036903:11005-11024 | Msa1456130:intron | 25.0% |
| !!! | CTTATTTTATTTCCCTTCTT+GGG | + | tig0036903:11006-11025 | Msa1456130:intron | 25.0% |
| ! | ACAGAACTATAAAATTCTTG+GGG | - | tig0036903:11208-11227 | Msa1456130:intergenic | 25.0% |
| ! | GACAGAACTATAAAATTCTT+GGG | - | tig0036903:11209-11228 | Msa1456130:intergenic | 25.0% |
| ! | AGACAGAACTATAAAATTCT+TGG | - | tig0036903:11210-11229 | Msa1456130:intergenic | 25.0% |
| !!! | TCCTGAAACATATATTTTGA+AGG | + | tig0036903:11415-11434 | Msa1456130:CDS | 25.0% |
| ! | TCCTTCAAAATATATGTTTC+AGG | - | tig0036903:11419-11438 | Msa1456130:intergenic | 25.0% |
| !!! | AACATATATTTTGAAGGATC+AGG | + | tig0036903:11421-11440 | Msa1456130:CDS | 25.0% |
| ! | AGCAATGAAAGAAAATATCA+AGG | - | tig0036903:11467-11486 | Msa1456130:intergenic | 25.0% |
| ! | TCAAGCAGATGATAATTAAA+TGG | + | tig0036903:11525-11544 | Msa1456130:intron | 25.0% |
| !! | TGCAATATATCTTCCATTTT+TGG | + | tig0036903:11587-11606 | Msa1456130:intron | 25.0% |
| !!! | AATATATCTTCCATTTTTGG+TGG | + | tig0036903:11590-11609 | Msa1456130:intron | 25.0% |
| ! | TAAGCATATAGACGTATTTA+AGG | + | tig0036903:11745-11764 | Msa1456130:intron | 25.0% |
| ! | AAGCATATAGACGTATTTAA+GGG | + | tig0036903:11746-11765 | Msa1456130:intron | 25.0% |
| ! | TGGAAAACAGAAATTGAAAA+CGG | - | tig0036903:11832-11851 | Msa1456130:intergenic | 25.0% |
| !! | TGATTGGTTAAAATTCACAT+GGG | - | tig0036903:12131-12150 | Msa1456130:intergenic | 25.0% |
| !! | TTGATTGGTTAAAATTCACA+TGG | - | tig0036903:12132-12151 | Msa1456130:intergenic | 25.0% |
| ! | TAGTGAAAAGAAAAGGTAAA+TGG | - | tig0036903:12464-12483 | Msa1456130:intergenic | 25.0% |
| ! | AGTATATAGAAATGAGAGTA+TGG | + | tig0036903:12655-12674 | Msa1456130:CDS | 25.0% |
| ! | TTGTAGTTAATCTCAATATG+CGG | + | tig0036903:12840-12859 | Msa1456130:intron | 25.0% |
| ! | ATTGTTTACCAACTTACAAA+TGG | + | tig0036903:12879-12898 | Msa1456130:CDS | 25.0% |
| !!! | TTCTTTTTTTATCCAAAAGC+AGG | + | tig0036903:13277-13296 | Msa1456130:intron | 25.0% |
| ! | TCAATTTCAACAATGGAAAA+GGG | - | tig0036903:13310-13329 | Msa1456130:intergenic | 25.0% |
| ! | TTTCTTCTCAATTTCAACAA+TGG | - | tig0036903:13317-13336 | Msa1456130:intergenic | 25.0% |
| ! | GATAGAGTAAAATATCAGAT+CGG | - | tig0036903:13427-13446 | Msa1456130:intergenic | 25.0% |
| ! | TCAAATGACTAAAATATCAG+TGG | - | tig0036903:13470-13489 | Msa1456130:intergenic | 25.0% |
| ! | AGTCATTTGATTAATAAGCT+TGG | + | tig0036903:13480-13499 | Msa1456130:intron | 25.0% |
| ! | TATGTAGAGAAGATTTACAT+TGG | - | tig0036903:13902-13921 | Msa1456130:intergenic | 25.0% |
| !!! | TTACATTTTTGGTTCCTTTT+GGG | + | tig0036903:14294-14313 | Msa1456130:intron | 25.0% |
| ! | TAGATATATGTTTCTCATGT+TGG | + | tig0036903:14419-14438 | Msa1456130:intron | 25.0% |
| !!! | ACACAATTCAATTTTTTCCT+AGG | + | tig0036903:14455-14474 | Msa1456130:intron | 25.0% |
| ! | ATTGAGAATCAAATAAACAG+TGG | + | tig0036903:14577-14596 | Msa1456130:three_prime_UTR | 25.0% |
| !!! | TTTTTTTCTTTTTTGAGTGG+TGG | + | tig0036903:14622-14641 | Msa1456130:three_prime_UTR | 25.0% |
| AAACAAAAGGTTTCTACCTT+GGG | - | tig0036903:9550-9569 | Msa1456130:intergenic | 30.0% | |
| AAAACAAAAGGTTTCTACCT+TGG | - | tig0036903:9551-9570 | Msa1456130:intergenic | 30.0% | |
| !! | TATACACAGATTGTTGACTT+GGG | - | tig0036903:9614-9633 | Msa1456130:intergenic | 30.0% |
| ! | TTATACACAGATTGTTGACT+TGG | - | tig0036903:9615-9634 | Msa1456130:intergenic | 30.0% |
| ATGATATCTTCTTCATCATC+AGG | - | tig0036903:9915-9934 | Msa1456130:intergenic | 30.0% | |
| ATAGAAACAGAGAATTTGTG+TGG | - | tig0036903:10111-10130 | Msa1456130:intergenic | 30.0% | |
| TATCAAGGGTTAATAAGCAA+TGG | + | tig0036903:10156-10175 | Msa1456130:CDS | 30.0% | |
| ! | CTTGTCTTTTATGACATGTA+TGG | + | tig0036903:10333-10352 | Msa1456130:CDS | 30.0% |
| AGGTAAGATAAGAAGGAAAA+GGG | - | tig0036903:10668-10687 | Msa1456130:intergenic | 30.0% | |
| AAGGTAAGATAAGAAGGAAA+AGG | - | tig0036903:10669-10688 | Msa1456130:intergenic | 30.0% | |
| CACCATCAAATTTGCATTAT+CGG | - | tig0036903:11279-11298 | Msa1456130:intergenic | 30.0% | |
| ATGGTGAACATAATTTCTCT+TGG | + | tig0036903:11293-11312 | Msa1456130:intron | 30.0% | |
| ATTATCTGTAGGGAAATCAA+TGG | + | tig0036903:11372-11391 | Msa1456130:intron | 30.0% | |
| TTATCTGTAGGGAAATCAAT+GGG | + | tig0036903:11373-11392 | Msa1456130:intron | 30.0% | |
| AATATATGTTTCAGGATTCC+TGG | - | tig0036903:11411-11430 | Msa1456130:intergenic | 30.0% | |
| TTGATGTTTGAGCTTAAACT+AGG | + | tig0036903:11773-11792 | Msa1456130:intron | 30.0% | |
| ATTGTAGATAGATGAGTGAT+GGG | - | tig0036903:11979-11998 | Msa1456130:intergenic | 30.0% | |
| TATTGTAGATAGATGAGTGA+TGG | - | tig0036903:11980-11999 | Msa1456130:intergenic | 30.0% | |
| ! | TTGATTGGTTACAATTTCCA+TGG | + | tig0036903:12064-12083 | Msa1456130:intron | 30.0% |
| ACTGTTAATAGATGAGTGAT+GGG | - | tig0036903:12224-12243 | Msa1456130:intergenic | 30.0% | |
| TACTGTTAATAGATGAGTGA+TGG | - | tig0036903:12225-12244 | Msa1456130:intergenic | 30.0% | |
| TTGAATATTTCTCGAACTTC+TGG | - | tig0036903:12327-12346 | Msa1456130:intergenic | 30.0% | |
| GGAAAGAAATTATAAGCAGA+TGG | - | tig0036903:12439-12458 | Msa1456130:intergenic | 30.0% | |
| GAAAAGAAAAGGTAAATGGA+AGG | - | tig0036903:12460-12479 | Msa1456130:intergenic | 30.0% | |
| CTGAAAGTAGTGAAAAGAAA+AGG | - | tig0036903:12471-12490 | Msa1456130:intergenic | 30.0% | |
| ! | CTTTTCTTTTCACTACTTTC+AGG | + | tig0036903:12469-12488 | Msa1456130:intron | 30.0% |
| TCATTGTGATGAGTTACAAA+TGG | - | tig0036903:12542-12561 | Msa1456130:intergenic | 30.0% | |
| ATATGCGGCAAATTTCAATT+AGG | + | tig0036903:12855-12874 | Msa1456130:intron | 30.0% | |
| TATAGCTTCCATTTGTAAGT+TGG | - | tig0036903:12890-12909 | Msa1456130:intergenic | 30.0% | |
| CAACTCCATTTGAATGATAT+TGG | - | tig0036903:12917-12936 | Msa1456130:intergenic | 30.0% | |
| AACTTGTCAGTCATCAATTA+TGG | + | tig0036903:12987-13006 | Msa1456130:intron | 30.0% | |
| TGTATTCTTCTTATCGTTAC+AGG | + | tig0036903:13046-13065 | Msa1456130:intron | 30.0% | |
| ! | TGTACAATCTGTTTCTTTGT+TGG | + | tig0036903:13229-13248 | Msa1456130:intron | 30.0% |
| CAATTTCAACAATGGAAAAG+GGG | - | tig0036903:13309-13328 | Msa1456130:intergenic | 30.0% | |
| CTCAATTTCAACAATGGAAA+AGG | - | tig0036903:13311-13330 | Msa1456130:intergenic | 30.0% | |
| TGACTAAAATATCAGTGGAA+CGG | - | tig0036903:13465-13484 | Msa1456130:intergenic | 30.0% | |
| GACAAACAATTCAAAACGTT+CGG | - | tig0036903:13645-13664 | Msa1456130:intergenic | 30.0% | |
| GAAGTAAGTTAATGAAACTC+TGG | + | tig0036903:13674-13693 | Msa1456130:intron | 30.0% | |
| ATATCATAGAGTGGTTTGAT+TGG | - | tig0036903:13930-13949 | Msa1456130:intergenic | 30.0% | |
| !!! | CTTACATTTTTGGTTCCTTT+TGG | + | tig0036903:14293-14312 | Msa1456130:intron | 30.0% |
| CAATAAAAACCTTTAGCTGA+AGG | - | tig0036903:14369-14388 | Msa1456130:intergenic | 30.0% | |
| TAGGGAAAAATATTAAGCCT+AGG | - | tig0036903:14475-14494 | Msa1456130:intergenic | 30.0% | |
| !!! | TTTTTCCCTACATTGATTTC+AGG | + | tig0036903:14485-14504 | Msa1456130:intron | 30.0% |
| AAGTTCCTGAAATCAATGTA+GGG | - | tig0036903:14493-14512 | Msa1456130:intergenic | 30.0% | |
| GTTATGTAATTACTCCAAGT+AGG | + | tig0036903:14672-14691 | Msa1456130:three_prime_UTR | 30.0% | |
| AACAAAAGGTTTCTACCTTG+GGG | - | tig0036903:9549-9568 | Msa1456130:intergenic | 35.0% | |
| ACTCTACATAGATAGAGAGA+AGG | + | tig0036903:9639-9658 | Msa1456130:five_prime_UTR | 35.0% | |
| CTCTACATAGATAGAGAGAA+GGG | + | tig0036903:9640-9659 | Msa1456130:five_prime_UTR | 35.0% | |
| GGGAATTGAAGAAGATTTGA+AGG | + | tig0036903:9660-9679 | Msa1456130:five_prime_UTR | 35.0% | |
| ATTACCAACCAAATCAAAGG+AGG | - | tig0036903:9745-9764 | Msa1456130:intergenic | 35.0% | |
| !! | TCCTTTGATTTGGTTGGTAA+TGG | + | tig0036903:9744-9763 | Msa1456130:exon | 35.0% |
| TCCATTACCAACCAAATCAA+AGG | - | tig0036903:9748-9767 | Msa1456130:intergenic | 35.0% | |
| TAGCATTAAGGTTCATCACA+TGG | + | tig0036903:9841-9860 | Msa1456130:intron | 35.0% | |
| ATATCTTCTTCATCATCAGG+TGG | - | tig0036903:9912-9931 | Msa1456130:intergenic | 35.0% | |
| TATACTTAAGCCTGTTCTCA+CGG | - | tig0036903:10053-10072 | Msa1456130:intergenic | 35.0% | |
| ACAGAGAATTTGTGTGGATA+GGG | - | tig0036903:10105-10124 | Msa1456130:intergenic | 35.0% | |
| AACAGAGAATTTGTGTGGAT+AGG | - | tig0036903:10106-10125 | Msa1456130:intergenic | 35.0% | |
| AAGACACAGAAACATCTTCA+AGG | - | tig0036903:10188-10207 | Msa1456130:intergenic | 35.0% | |
| ! | TGAAGATGTTTCTGTGTCTT+TGG | + | tig0036903:10188-10207 | Msa1456130:CDS | 35.0% |
| ! | TATATTTTCCCTTTACTGGC+AGG | - | tig0036903:10425-10444 | Msa1456130:intergenic | 35.0% |
| ACATAGTAACATCTCAAACC+TGG | - | tig0036903:10950-10969 | Msa1456130:intergenic | 35.0% | |
| !! | ATTTCACTCCTCTAAAGTCA+AGG | + | tig0036903:11042-11061 | Msa1456130:intron | 35.0% |
| !! | TTTCACTCCTCTAAAGTCAA+GGG | + | tig0036903:11043-11062 | Msa1456130:intron | 35.0% |
| CATCAAATTTGCATTATCGG+CGG | - | tig0036903:11276-11295 | Msa1456130:intergenic | 35.0% | |
| !!! | ATCTTCCATTTTTGGTGGTT+TGG | + | tig0036903:11595-11614 | Msa1456130:intron | 35.0% |
| !!! | TCTTCCATTTTTGGTGGTTT+GGG | + | tig0036903:11596-11615 | Msa1456130:intron | 35.0% |
| ATGAGAGAAAATGCCTACTT+CGG | - | tig0036903:11651-11670 | Msa1456130:intergenic | 35.0% | |
| GATAATATCAAGCAAGTGCA+TGG | - | tig0036903:11799-11818 | Msa1456130:intergenic | 35.0% | |
| AAGATTAGTGTTCTGATCTG+AGG | + | tig0036903:11917-11936 | Msa1456130:intron | 35.0% | |
| !! | TATAAATTTGGTGGGTTCCA+TGG | - | tig0036903:12084-12103 | Msa1456130:intergenic | 35.0% |
| TGGAACCCACCAAATTTATA+TGG | + | tig0036903:12084-12103 | Msa1456130:intron | 35.0% | |
| GGAACCCACCAAATTTATAT+GGG | + | tig0036903:12085-12104 | Msa1456130:intron | 35.0% | |
| ATGTGGGTCCCATATAAATT+TGG | - | tig0036903:12096-12115 | Msa1456130:intergenic | 35.0% | |
| TAACACACACTCTCTTTGAT+TGG | - | tig0036903:12147-12166 | Msa1456130:intergenic | 35.0% | |
| GATGCAACATCAAATCCAAA+TGG | - | tig0036903:12194-12213 | Msa1456130:intergenic | 35.0% | |
| GATGCAACATCAAATCCAAA+TGG | - | tig0036903:12194-12213 | Msa1456130:intergenic | 35.0% | |
| AACAAACCTCCAAGAAATCA+CGG | - | tig0036903:12395-12414 | Msa1456130:intergenic | 35.0% | |
| ATAACAGAGGAAATGTTGAG+CGG | + | tig0036903:12752-12771 | Msa1456130:CDS | 35.0% | |
| ATGTTGAGCGGTAAGAATTA+AGG | + | tig0036903:12764-12783 | Msa1456130:intron | 35.0% | |
| TCATTCAAATGGAGTTGACA+AGG | + | tig0036903:12920-12939 | Msa1456130:CDS | 35.0% | |
| ATTCTTCTTATCGTTACAGG+AGG | + | tig0036903:13049-13068 | Msa1456130:intron | 35.0% | |
| ACTTAGTATTCCAAAGGACT+TGG | + | tig0036903:13107-13126 | Msa1456130:CDS | 35.0% | |
| !! | ATATTGATTAGCTTCCTCAC+TGG | - | tig0036903:13133-13152 | Msa1456130:intergenic | 35.0% |
| TTGATCATATTGCAGCTTGT+AGG | + | tig0036903:13518-13537 | Msa1456130:intron | 35.0% | |
| AGCAAACTGATATCATAGAG+TGG | - | tig0036903:13939-13958 | Msa1456130:intergenic | 35.0% | |
| ! | GACTGATTCACAGAACATAA+AGG | + | tig0036903:14222-14241 | Msa1456130:CDS | 35.0% |
| !!! | ATTTTTGGTTCCTTTTGGGT+TGG | + | tig0036903:14298-14317 | Msa1456130:intron | 35.0% |
| CAAGTTCCTGAAATCAATGT+AGG | - | tig0036903:14494-14513 | Msa1456130:intergenic | 35.0% | |
| CTCCAAGTAGGATTAAGATT+AGG | + | tig0036903:14684-14703 | Msa1456130:three_prime_UTR | 35.0% | |
| CTCCTAATCTTAATCCTACT+TGG | - | tig0036903:14689-14708 | Msa1456130:intergenic | 35.0% | |
| !!! | TTGACTTGGGAACCAAGTTT+TGG | - | tig0036903:9601-9620 | Msa1456130:intergenic | 40.0% |
| GAGGACAAAGCAACTAAACA+GGG | - | tig0036903:9726-9745 | Msa1456130:intergenic | 40.0% | |
| TGCTTTGTCCTCCTTTGATT+TGG | + | tig0036903:9734-9753 | Msa1456130:five_prime_UTR | 40.0% | |
| !! | TTGTCCTCCTTTGATTTGGT+TGG | + | tig0036903:9738-9757 | Msa1456130:five_prime_UTR | 40.0% |
| AATGGAAGCTACTACTTCGT+CGG | + | tig0036903:9762-9781 | Msa1456130:exon | 40.0% | |
| CGAGTTACTTACAGTATTCG+CGG | - | tig0036903:9806-9825 | Msa1456130:intergenic | 40.0% | |
| AGAAGATATCATCGACCCAA+AGG | + | tig0036903:9923-9942 | Msa1456130:CDS | 40.0% | |
| ATATCATCGACCCAAAGGTA+TGG | + | tig0036903:9928-9947 | Msa1456130:intron | 40.0% | |
| CTATGTATTAGGCCGAGTTA+AGG | + | tig0036903:10287-10306 | Msa1456130:intron | 40.0% | |
| CTATAGTGAGATAGAGCTTG+CGG | + | tig0036903:10564-10583 | Msa1456130:intron | 40.0% | |
| !! | AAGTTATATCTCTGGGATGC+AGG | + | tig0036903:10843-10862 | Msa1456130:intron | 40.0% |
| GTGAAGCGATTTGACATTGT+CGG | + | tig0036903:10911-10930 | Msa1456130:CDS | 40.0% | |
| !! | TTCACTCCTCTAAAGTCAAG+GGG | + | tig0036903:11044-11063 | Msa1456130:intron | 40.0% |
| !! | CATTTTGACAAGGGAACAAC+AGG | - | tig0036903:11149-11168 | Msa1456130:intergenic | 40.0% |
| TTCCCTTGTCAAAATGTCCA+GGG | + | tig0036903:11153-11172 | Msa1456130:intron | 40.0% | |
| !! | TTCCCTGGACATTTTGACAA+GGG | - | tig0036903:11158-11177 | Msa1456130:intergenic | 40.0% |
| !! | TTTCCCTGGACATTTTGACA+AGG | - | tig0036903:11159-11178 | Msa1456130:intergenic | 40.0% |
| CAAAATGTCCAGGGAAAAGT+AGG | + | tig0036903:11162-11181 | Msa1456130:intron | 40.0% | |
| CGCCGATAATGCAAATTTGA+TGG | + | tig0036903:11274-11293 | Msa1456130:CDS | 40.0% | |
| !!! | CTTCCATTTTTGGTGGTTTG+GGG | + | tig0036903:11597-11616 | Msa1456130:intron | 40.0% |
| AGATTGAGATAGACCGAAGT+AGG | + | tig0036903:11635-11654 | Msa1456130:intron | 40.0% | |
| ! | CAAAGAGAGTGTGCTGAAAA+GGG | - | tig0036903:12047-12066 | Msa1456130:intergenic | 40.0% |
| ! | TCAAAGAGAGTGTGCTGAAA+AGG | - | tig0036903:12048-12067 | Msa1456130:intergenic | 40.0% |
| TTCAGCACACTCTCTTTGAT+TGG | + | tig0036903:12049-12068 | Msa1456130:intron | 40.0% | |
| GGGTCCCATATAAATTTGGT+GGG | - | tig0036903:12092-12111 | Msa1456130:intergenic | 40.0% | |
| TGGGTCCCATATAAATTTGG+TGG | - | tig0036903:12093-12112 | Msa1456130:intergenic | 40.0% | |
| TATATGGGACCCACATGATT+TGG | + | tig0036903:12100-12119 | Msa1456130:intron | 40.0% | |
| AGCATTTCGTTCATGCCATT+TGG | + | tig0036903:12176-12195 | Msa1456130:intron | 40.0% | |
| AAGATATCGTTCACGCCATT+TGG | + | tig0036903:12287-12306 | Msa1456130:CDS | 40.0% | |
| CCTATGATGATCAAGATTGC+CGG | + | tig0036903:12500-12519 | Msa1456130:CDS | 40.0% | |
| AGCTGCTTGAGATAAAGTTC+TGG | - | tig0036903:12596-12615 | Msa1456130:intergenic | 40.0% | |
| AGAACTTTATCTCAAGCAGC+TGG | + | tig0036903:12595-12614 | Msa1456130:CDS | 40.0% | |
| TATCTCAAGCAGCTGGTTAT+TGG | + | tig0036903:12602-12621 | Msa1456130:CDS | 40.0% | |
| CTGGGTCGTGTTTATGAAAT+CGG | + | tig0036903:12629-12648 | Msa1456130:CDS | 40.0% | |
| ! | TGAGTTCTATATGCCGTTTG+CGG | + | tig0036903:12709-12728 | Msa1456130:CDS | 40.0% |
| AGGTCATAGTAATCCGCAAA+CGG | - | tig0036903:12725-12744 | Msa1456130:intergenic | 40.0% | |
| TTTCCTCTGTTATCTCCATC+AGG | - | tig0036903:12745-12764 | Msa1456130:intergenic | 40.0% | |
| GGAGTGAAGTCTATTTCGAT+AGG | - | tig0036903:12948-12967 | Msa1456130:intergenic | 40.0% | |
| AAGTTTACACTGCACCTGAA+GGG | - | tig0036903:12972-12991 | Msa1456130:intergenic | 40.0% | |
| CAGGAGGATTGATATGATTG+AGG | + | tig0036903:13065-13084 | Msa1456130:intron | 40.0% | |
| GATTGAGGAACTAGAGAGTA+TGG | + | tig0036903:13080-13099 | Msa1456130:CDS | 40.0% | |
| CACACGTTTCTTCCAAAAAG+TGG | - | tig0036903:13544-13563 | Msa1456130:intergenic | 40.0% | |
| GGGTGATTCATGATGAATGT+AGG | - | tig0036903:13572-13591 | Msa1456130:intergenic | 40.0% | |
| CCAAAGGACTCATTATTTCG+GGG | - | tig0036903:13592-13611 | Msa1456130:intergenic | 40.0% | |
| GCCAAAGGACTCATTATTTC+GGG | - | tig0036903:13593-13612 | Msa1456130:intergenic | 40.0% | |
| GGCCAAAGGACTCATTATTT+CGG | - | tig0036903:13594-13613 | Msa1456130:intergenic | 40.0% | |
| ACAATTCAAAACGTTCGGTC+AGG | - | tig0036903:13640-13659 | Msa1456130:intergenic | 40.0% | |
| ! | GAGATTTGCTCAACAACTCA+AGG | + | tig0036903:13813-13832 | Msa1456130:CDS | 40.0% |
| GTCTACGTTTCCTGCATATT+AGG | + | tig0036903:14078-14097 | Msa1456130:intron | 40.0% | |
| CGTTTCCTGCATATTAGGAT+CGG | + | tig0036903:14083-14102 | Msa1456130:intron | 40.0% | |
| TGCATATTAGGATCGGCAAT+CGG | + | tig0036903:14090-14109 | Msa1456130:intron | 40.0% | |
| AGTGCAAAATTCCTCGTCTA+AGG | - | tig0036903:14134-14153 | Msa1456130:intergenic | 40.0% | |
| !!! | TTTTGCACTGCTTTGGAGTA+TGG | + | tig0036903:14145-14164 | Msa1456130:CDS | 40.0% |
| AGGTACATCTTGAGGTTTCA+TGG | - | tig0036903:14349-14368 | Msa1456130:intergenic | 40.0% | |
| ! | TTAGCTGAAGGTACATCTTG+AGG | - | tig0036903:14357-14376 | Msa1456130:intergenic | 40.0% |
| CAAGATGTACCTTCAGCTAA+AGG | + | tig0036903:14357-14376 | Msa1456130:CDS | 40.0% | |
| ! | GTTTTCAGATGCTTTGTGCT+TGG | + | tig0036903:14722-14741 | Msa1456130:three_prime_UTR | 40.0% |
| ! | TGAGCATGACTCAGTTGGTA+TGG | - | tig0036903:9407-9426 | None:intergenic | 45.0% |
| !!! | TTGGGAACCAAGTTTTGGCT+GGG | - | tig0036903:9596-9615 | Msa1456130:intergenic | 45.0% |
| GGAGGACAAAGCAACTAAAC+AGG | - | tig0036903:9727-9746 | Msa1456130:intergenic | 45.0% | |
| CACTCTCTCTCGTAGCATTA+AGG | + | tig0036903:9829-9848 | Msa1456130:intron | 45.0% | |
| ACATGTGCAGCCATACCTTT+GGG | - | tig0036903:9941-9960 | Msa1456130:intergenic | 45.0% | |
| ! | GATGTTTCTGTGTCTTTGGC+TGG | + | tig0036903:10192-10211 | Msa1456130:CDS | 45.0% |
| ! | AAGTGCGTATGGCCTTAACT+CGG | - | tig0036903:10302-10321 | Msa1456130:intergenic | 45.0% |
| TGACTCCAAGGTCCAGATTA+TGG | + | tig0036903:10362-10381 | Msa1456130:CDS | 45.0% | |
| ATCAGCCATAATCTGGACCT+TGG | - | tig0036903:10370-10389 | Msa1456130:intergenic | 45.0% | |
| TCCAGATTATGGCTGATGCA+AGG | + | tig0036903:10373-10392 | Msa1456130:CDS | 45.0% | |
| ACCTTGCATCAGCCATAATC+TGG | - | tig0036903:10377-10396 | Msa1456130:intergenic | 45.0% | |
| TGACCTTACCTGCCAGTAAA+GGG | + | tig0036903:10414-10433 | Msa1456130:intron | 45.0% | |
| TTTCCCTTTACTGGCAGGTA+AGG | - | tig0036903:10420-10439 | Msa1456130:intergenic | 45.0% | |
| GGAATAGGGTCTACAGAAGA+AGG | - | tig0036903:10777-10796 | Msa1456130:intergenic | 45.0% | |
| !! | TTTGACATTGTCGGTGTCAC+TGG | + | tig0036903:10920-10939 | Msa1456130:CDS | 45.0% |
| CAAGAAAGACAGCCCAAGAA+GGG | - | tig0036903:11021-11040 | Msa1456130:intergenic | 45.0% | |
| !! | TCACTCCTCTAAAGTCAAGG+GGG | + | tig0036903:11045-11064 | Msa1456130:intron | 45.0% |
| GTTCCCTTGTCAAAATGTCC+AGG | + | tig0036903:11152-11171 | Msa1456130:intron | 45.0% | |
| TAGGGAAATCAATGGGTACC+AGG | + | tig0036903:11380-11399 | Msa1456130:intron | 45.0% | |
| ! | TCTGATCTGAGGTGTGAAGT+TGG | + | tig0036903:11928-11947 | Msa1456130:intron | 45.0% |
| !! | TAGATGAGTGATGGGTGATC+TGG | - | tig0036903:12216-12235 | Msa1456130:intergenic | 45.0% |
| CCAAGAAATCACGGTCATCA+AGG | - | tig0036903:12386-12405 | Msa1456130:intergenic | 45.0% | |
| ! | CCTTGATGACCGTGATTTCT+TGG | + | tig0036903:12383-12402 | Msa1456130:CDS | 45.0% |
| TGATGACCGTGATTTCTTGG+AGG | + | tig0036903:12386-12405 | Msa1456130:CDS | 45.0% | |
| CCGGCAATCTTGATCATCAT+AGG | - | tig0036903:12503-12522 | Msa1456130:intergenic | 45.0% | |
| ATGATGATCAAGATTGCCGG+TGG | + | tig0036903:12503-12522 | Msa1456130:CDS | 45.0% | |
| TCAAGCAGCTGGTTATTGGT+GGG | + | tig0036903:12606-12625 | Msa1456130:CDS | 45.0% | |
| CGTAGTGAACTCAGGATTGT+GGG | - | tig0036903:12687-12706 | Msa1456130:intergenic | 45.0% | |
| ACGTAGTGAACTCAGGATTG+TGG | - | tig0036903:12688-12707 | Msa1456130:intergenic | 45.0% | |
| AACTCACACGTAGTGAACTC+AGG | - | tig0036903:12695-12714 | Msa1456130:intergenic | 45.0% | |
| ! | TGCGGATTACTATGACCTGA+TGG | + | tig0036903:12727-12746 | Msa1456130:CDS | 45.0% |
| TGACCTGATGGAGATAACAG+AGG | + | tig0036903:12739-12758 | Msa1456130:CDS | 45.0% | |
| CAAGTTTACACTGCACCTGA+AGG | - | tig0036903:12973-12992 | Msa1456130:intergenic | 45.0% | |
| GGCAGGACTTAGTATTCCAA+AGG | + | tig0036903:13101-13120 | Msa1456130:CDS | 45.0% | |
| TTTATCCAACAACCGAGCAG+TGG | - | tig0036903:13205-13224 | Msa1456130:intergenic | 45.0% | |
| ! | AAGGGGTTACAACCTGCTTT+TGG | - | tig0036903:13292-13311 | Msa1456130:intergenic | 45.0% |
| CCCCGAAATAATGAGTCCTT+TGG | + | tig0036903:13589-13608 | Msa1456130:CDS | 45.0% | |
| GATTGCCGATCCTAATATGC+AGG | - | tig0036903:14091-14110 | Msa1456130:intergenic | 45.0% | |
| GCATATTAGGATCGGCAATC+GGG | + | tig0036903:14091-14110 | Msa1456130:intron | 45.0% | |
| CATATTAGGATCGGCAATCG+GGG | + | tig0036903:14092-14111 | Msa1456130:intron | 45.0% | |
| ATATTAGGATCGGCAATCGG+GGG | + | tig0036903:14093-14112 | Msa1456130:intron | 45.0% | |
| ! | CGAGGAATTTTGCACTGCTT+TGG | + | tig0036903:14138-14157 | Msa1456130:CDS | 45.0% |
| !! | GTTGGGGTTTGGGTATTGAT+AGG | + | tig0036903:14185-14204 | Msa1456130:CDS | 45.0% |
| !!! | GTTCCTTTTGGGTTGGTTAC+AGG | + | tig0036903:14305-14324 | Msa1456130:intron | 45.0% |
| CTTCCTGTAACCAACCCAAA+AGG | - | tig0036903:14311-14330 | Msa1456130:intergenic | 45.0% | |
| ! | GCACAAAGCATCTGAAAACG+AGG | - | tig0036903:14721-14740 | Msa1456130:intergenic | 45.0% |
| !! | AAAAAAATTAAAAAAAGAAA+TGG | - | tig0036903:10798-10817 | Msa1456130:intergenic | 5.0% |
| !!! | TTATTAAAATTTAAAATGAT+AGG | - | tig0036903:11079-11098 | Msa1456130:intergenic | 5.0% |
| !!! | TTATAAAATCTATTATATTT+TGG | + | tig0036903:13010-13029 | Msa1456130:intron | 5.0% |
| !!! | TGGGAACCAAGTTTTGGCTG+GGG | - | tig0036903:9595-9614 | Msa1456130:intergenic | 50.0% |
| !! | CTTGGGAACCAAGTTTTGGC+TGG | - | tig0036903:9597-9616 | Msa1456130:intergenic | 50.0% |
| CTTACAGTATTCGCGGTTGC+CGG | - | tig0036903:9799-9818 | Msa1456130:intergenic | 50.0% | |
| CACATGTGCAGCCATACCTT+TGG | - | tig0036903:9942-9961 | Msa1456130:intergenic | 50.0% | |
| TGTTCTCACGGTATTGCTGC+AGG | - | tig0036903:10041-10060 | Msa1456130:intergenic | 50.0% | |
| TGCAGCAATACCGTGAGAAC+AGG | + | tig0036903:10040-10059 | Msa1456130:intron | 50.0% | |
| !! | TTTGGCTGGTTCGTAGTCTC+CGG | + | tig0036903:10206-10225 | Msa1456130:intron | 50.0% |
| GTTAAGGCCATACGCACTTC+AGG | + | tig0036903:10303-10322 | Msa1456130:CDS | 50.0% | |
| CTTTGCACCTGAAGTGCGTA+TGG | - | tig0036903:10313-10332 | Msa1456130:intergenic | 50.0% | |
| GTATGGCGATGATGACTCCA+AGG | + | tig0036903:10350-10369 | Msa1456130:CDS | 50.0% | |
| CTGACCTTACCTGCCAGTAA+AGG | + | tig0036903:10413-10432 | Msa1456130:intron | 50.0% | |
| !! | CAGGAGTTCTGACTTGGATG+TGG | + | tig0036903:10862-10881 | Msa1456130:intron | 50.0% |
| CCAAGAAAGACAGCCCAAGA+AGG | - | tig0036903:11022-11041 | Msa1456130:intergenic | 50.0% | |
| CCTTCTTGGGCTGTCTTTCT+TGG | + | tig0036903:11019-11038 | Msa1456130:intron | 50.0% | |
| TGTCCAGGGAAAAGTAGGAC+AGG | + | tig0036903:11167-11186 | Msa1456130:intron | 50.0% | |
| !! | TCTCCTGTCCTACTTTTCCC+TGG | - | tig0036903:11173-11192 | Msa1456130:intergenic | 50.0% |
| ! | GCAGCAGCAGACTCTTGTTT+GGG | - | tig0036903:11251-11270 | Msa1456130:intergenic | 50.0% |
| AGCAGCAGCAGACTCTTGTT+TGG | - | tig0036903:11252-11271 | Msa1456130:intergenic | 50.0% | |
| !! | AATGGGTACCAGGAAGTACC+AGG | + | tig0036903:11390-11409 | Msa1456130:CDS | 50.0% |
| TCAGGATTCCTGGTACTTCC+TGG | - | tig0036903:11401-11420 | Msa1456130:intergenic | 50.0% | |
| ACGCCCCAAACCACCAAAAA+TGG | - | tig0036903:11603-11622 | Msa1456130:intergenic | 50.0% | |
| ! | ATGGGACCCACATGATTTGG+TGG | + | tig0036903:12103-12122 | Msa1456130:intron | 50.0% |
| !! | TGGGACCCACATGATTTGGT+GGG | + | tig0036903:12104-12123 | Msa1456130:intron | 50.0% |
| TGGGTCCCACCAAATCATGT+GGG | - | tig0036903:12112-12131 | Msa1456130:intergenic | 50.0% | |
| ATGGGTCCCACCAAATCATG+TGG | - | tig0036903:12113-12132 | Msa1456130:intergenic | 50.0% | |
| GCAGATGGCGTCAGAATACT+TGG | - | tig0036903:12424-12443 | Msa1456130:intergenic | 50.0% | |
| CTCAAGCAGCTGGTTATTGG+TGG | + | tig0036903:12605-12624 | Msa1456130:CDS | 50.0% | |
| TAGACTTCACTCCACCCTTC+AGG | + | tig0036903:12955-12974 | Msa1456130:CDS | 50.0% | |
| TTTACACTGCACCTGAAGGG+TGG | - | tig0036903:12969-12988 | Msa1456130:intergenic | 50.0% | |
| ! | GAGGAACTAGAGAGTATGGC+AGG | + | tig0036903:13084-13103 | Msa1456130:CDS | 50.0% |
| ACAACCGAGCAGTGGTTTGA+GGG | - | tig0036903:13197-13216 | Msa1456130:intergenic | 50.0% | |
| AACAACCGAGCAGTGGTTTG+AGG | - | tig0036903:13198-13217 | Msa1456130:intergenic | 50.0% | |
| TCAAACCACTGCTCGGTTGT+TGG | + | tig0036903:13197-13216 | Msa1456130:CDS | 50.0% | |
| !!! | GCAGCTTGTAGGCCACTTTT+TGG | + | tig0036903:13529-13548 | Msa1456130:intron | 50.0% |
| !! | TGGTTTTGCTCTGTGCGACT+TGG | - | tig0036903:13615-13634 | Msa1456130:intergenic | 50.0% |
| AAGTCGCACAGAGCAAAACC+AGG | + | tig0036903:13614-13633 | Msa1456130:CDS | 50.0% | |
| AATCTCTGACGCTGCACAAC+AGG | - | tig0036903:13799-13818 | Msa1456130:intergenic | 50.0% | |
| GAGTATGGTATGCCACCAAC+TGG | + | tig0036903:14160-14179 | Msa1456130:CDS | 50.0% | |
| TATGGTATGCCACCAACTGG+CGG | + | tig0036903:14163-14182 | Msa1456130:CDS | 50.0% | |
| CCTCGTGAGCATGACTCAGT+TGG | - | tig0036903:9412-9431 | None:intergenic | 55.0% | |
| CCAACTGAGTCATGCTCACG+AGG | + | tig0036903:9409-9428 | Msa1456130:five_prime_UTR | 55.0% | |
| GGGGTCTACGCTTTGACGAA+GGG | - | tig0036903:9530-9549 | Msa1456130:intergenic | 55.0% | |
| TGGGGTCTACGCTTTGACGA+AGG | - | tig0036903:9531-9550 | Msa1456130:intergenic | 55.0% | |
| TCGTCAAAGCGTAGACCCCA+AGG | + | tig0036903:9531-9550 | Msa1456130:five_prime_UTR | 55.0% | |
| !!! | CCAAGTTTTGGCTGGGGAGT+GGG | - | tig0036903:9589-9608 | Msa1456130:intergenic | 55.0% |
| !!! | ACCAAGTTTTGGCTGGGGAG+TGG | - | tig0036903:9590-9609 | Msa1456130:intergenic | 55.0% |
| TTCGTCGGAGCCTATACCTC+CGG | + | tig0036903:9777-9796 | Msa1456130:CDS | 55.0% | |
| ! | GGGATGCAGGAGTTCTGACT+TGG | + | tig0036903:10856-10875 | Msa1456130:intron | 55.0% |
| !! | GTCGGTGTCACTGGATTTCC+AGG | + | tig0036903:10929-10948 | Msa1456130:CDS | 55.0% |
| GGACACCCCCTTGACTTTAG+AGG | - | tig0036903:11053-11072 | Msa1456130:intergenic | 55.0% | |
| !! | CAGCTGGTTATTGGTGGGCT+GGG | + | tig0036903:12611-12630 | Msa1456130:CDS | 55.0% |
| TCCAAAGGACTTGGCCAGTG+AGG | + | tig0036903:13116-13135 | Msa1456130:CDS | 55.0% | |
| TCCTCACTGGCCAAGTCCTT+TGG | - | tig0036903:13120-13139 | Msa1456130:intergenic | 55.0% | |
| AACCGAGCAGTGGTTTGAGG+GGG | - | tig0036903:13195-13214 | Msa1456130:intergenic | 55.0% | |
| CAACCGAGCAGTGGTTTGAG+GGG | - | tig0036903:13196-13215 | Msa1456130:intergenic | 55.0% | |
| TCAAAACGTTCGGTCAGGCC+TGG | - | tig0036903:13635-13654 | Msa1456130:intergenic | 55.0% | |
| ATCGGGGGATGATGAAGCGA+TGG | + | tig0036903:14108-14127 | Msa1456130:CDS | 55.0% | |
| ! | TGAAGCGATGGCCTTAGACG+AGG | + | tig0036903:14120-14139 | Msa1456130:CDS | 55.0% |
| TATGCCACCAACTGGCGGTT+GGG | + | tig0036903:14168-14187 | Msa1456130:CDS | 55.0% | |
| CCCACTCCCCAGCCAAAACT+TGG | + | tig0036903:9586-9605 | Msa1456130:five_prime_UTR | 60.0% | |
| ! | TTCGCGGTTGCCGGAGGTAT+AGG | - | tig0036903:9790-9809 | Msa1456130:intergenic | 60.0% |
| ACAGTATTCGCGGTTGCCGG+AGG | - | tig0036903:9796-9815 | Msa1456130:intergenic | 60.0% | |
| ! | GCAGCTGGTTATTGGTGGGC+TGG | + | tig0036903:12610-12629 | Msa1456130:CDS | 60.0% |
| CTCCCCCTCAAACCACTGCT+CGG | + | tig0036903:13190-13209 | Msa1456130:CDS | 60.0% | |
| ! | GCTCTGTGCGACTTGGCCAA+AGG | - | tig0036903:13608-13627 | Msa1456130:intergenic | 60.0% |
| GTATGCCACCAACTGGCGGT+TGG | + | tig0036903:14167-14186 | Msa1456130:CDS | 60.0% | |
| ATGCCACCAACTGGCGGTTG+GGG | + | tig0036903:14169-14188 | Msa1456130:CDS | 60.0% | |
| AAACCCCAACCGCCAGTTGG+TGG | - | tig0036903:14175-14194 | Msa1456130:intergenic | 60.0% | |
| ACCAACTGGCGGTTGGGGTT+TGG | + | tig0036903:14174-14193 | Msa1456130:CDS | 60.0% | |
| CCAACTGGCGGTTGGGGTTT+GGG | + | tig0036903:14175-14194 | Msa1456130:CDS | 60.0% | |
| TGGACGAGCTGCTGCTCCAC+CGG | - | tig0036903:12522-12541 | Msa1456130:intergenic | 65.0% | |
| CCCAAACCCCAACCGCCAGT+TGG | - | tig0036903:14178-14197 | Msa1456130:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0036903 | gene | 9384 | 14809 | 9384 | ID=Msa1456130;Name=Msa1456130 |
| tig0036903 | mRNA | 9384 | 14809 | 9384 | ID=Msa1456130-mRNA-1;Parent=Msa1456130;Name=Msa1456130-mRNA-1;_AED=0.10;_eAED=0.10;_QI=379|1|1|1|1|1|16|295|571 |
| tig0036903 | exon | 9384 | 9813 | 9384 | ID=Msa1456130-mRNA-1:exon:20577;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 9897 | 9944 | 9897 | ID=Msa1456130-mRNA-1:exon:20578;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 10045 | 10213 | 10045 | ID=Msa1456130-mRNA-1:exon:20579;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 10298 | 10394 | 10298 | ID=Msa1456130-mRNA-1:exon:20580;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 10865 | 10950 | 10865 | ID=Msa1456130-mRNA-1:exon:20581;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 11174 | 11295 | 11174 | ID=Msa1456130-mRNA-1:exon:20582;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 11383 | 11442 | 11383 | ID=Msa1456130-mRNA-1:exon:20583;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 12282 | 12407 | 12282 | ID=Msa1456130-mRNA-1:exon:20584;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 12491 | 12773 | 12491 | ID=Msa1456130-mRNA-1:exon:20585;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 12877 | 12976 | 12877 | ID=Msa1456130-mRNA-1:exon:20586;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 13068 | 13224 | 13068 | ID=Msa1456130-mRNA-1:exon:20587;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 13533 | 13676 | 13533 | ID=Msa1456130-mRNA-1:exon:20588;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 13766 | 13834 | 13766 | ID=Msa1456130-mRNA-1:exon:20589;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 14100 | 14243 | 14100 | ID=Msa1456130-mRNA-1:exon:20590;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 14327 | 14378 | 14327 | ID=Msa1456130-mRNA-1:exon:20591;Parent=Msa1456130-mRNA-1 |
| tig0036903 | exon | 14507 | 14809 | 14507 | ID=Msa1456130-mRNA-1:exon:20592;Parent=Msa1456130-mRNA-1 |
| tig0036903 | five_prime_UTR | 9384 | 9762 | 9384 | ID=Msa1456130-mRNA-1:five_prime_utr;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 9763 | 9813 | 9763 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 9897 | 9944 | 9897 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 10045 | 10213 | 10045 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 10298 | 10394 | 10298 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 10865 | 10950 | 10865 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 11174 | 11295 | 11174 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 11383 | 11442 | 11383 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 12282 | 12407 | 12282 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 12491 | 12773 | 12491 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 12877 | 12976 | 12877 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 13068 | 13224 | 13068 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 13533 | 13676 | 13533 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 13766 | 13834 | 13766 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 14100 | 14243 | 14100 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 14327 | 14378 | 14327 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | CDS | 14507 | 14514 | 14507 | ID=Msa1456130-mRNA-1:cds;Parent=Msa1456130-mRNA-1 |
| tig0036903 | three_prime_UTR | 14515 | 14809 | 14515 | ID=Msa1456130-mRNA-1:three_prime_utr;Parent=Msa1456130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
