Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359600 | XP_003588876.1 | 94.231 | 104 | 6 | 0 | 1 | 104 | 1 | 104 | 3.57e-66 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359600 | sp|Q96319|ERH_ARATH | 74.257 | 101 | 26 | 0 | 3 | 103 | 5 | 105 | 1.43e-52 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359600 | G7I895 | 94.231 | 104 | 6 | 0 | 1 | 104 | 1 | 104 | 1.70e-66 | 204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054780 | Msa1359600 | 0.898688 | 4.150582e-77 | -8.615850e-47 |
| Msa1359600 | Msa1403680 | 0.830460 | 2.901360e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359600 | MtrunA17_Chr1g0150021 | 94.231 | 104 | 6 | 0 | 1 | 104 | 1 | 104 | 3.28e-70 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359600 | AT5G10810.1 | 74.257 | 101 | 26 | 0 | 3 | 103 | 5 | 105 | 1.46e-53 | 163 |
Find 46 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTTAATTGCTAAAATTT+TGG | 0.074131 | tig0016715:+325025 | None:intergenic |
| CTTTCAACATTTGAAGAAAT+TGG | 0.132075 | tig0016715:-325063 | Msa1359600:CDS |
| CATCCTTGTCAAGTGTTCTA+TGG | 0.269582 | tig0016715:-324825 | Msa1359600:three_prime_UTR |
| CCTAACATCTATAATTAAAA+AGG | 0.326247 | tig0016715:-324726 | Msa1359600:three_prime_UTR |
| TAGAGCTACCAGAACTTTCA+TGG | 0.334223 | tig0016715:-327590 | Msa1359600:CDS |
| CTTAATCCACTCTCGATCAT+AGG | 0.344190 | tig0016715:+325094 | None:intergenic |
| TTCTTTACTTGCAGTTATGA+TGG | 0.351370 | tig0016715:-325137 | Msa1359600:intron |
| GTGAAAATCCATGAAAGTTC+TGG | 0.356886 | tig0016715:+327582 | None:intergenic |
| TTTCTGAAACAAATGACTAT+TGG | 0.358570 | tig0016715:-324867 | Msa1359600:three_prime_UTR |
| GATGAAGAGGAAGAAGAAAA+TGG | 0.362190 | tig0016715:+327769 | None:intergenic |
| GGCATGACTTGTTTGCTTTG+TGG | 0.363561 | tig0016715:-324679 | Msa1359600:three_prime_UTR |
| CTATGATCGAGAGTGGATTA+AGG | 0.376363 | tig0016715:-325093 | Msa1359600:CDS |
| TCATCCTTCTTCTTCTGCTA+TGG | 0.394112 | tig0016715:-327751 | Msa1359600:intron |
| AGAAGTTTGAATTAGAATAA+TGG | 0.430839 | tig0016715:+327618 | None:intergenic |
| CAGCTAAATAGTACAAGATA+AGG | 0.431445 | tig0016715:+324774 | None:intergenic |
| TAAGAGATATTTCTGACGGC+TGG | 0.446674 | tig0016715:+326165 | None:intergenic |
| ACTTGTTTGCTTTGTGGTGG+AGG | 0.452228 | tig0016715:-324673 | Msa1359600:three_prime_UTR |
| AAATATCTCTTATGATATCA+TGG | 0.475878 | tig0016715:-326154 | Msa1359600:CDS |
| CAATTTCTTCAAATGTTGAA+AGG | 0.494842 | tig0016715:+325064 | None:intergenic |
| TTAATCCACTCTCGATCATA+GGG | 0.515090 | tig0016715:+325095 | None:intergenic |
| TTAATTATAGATGTTAGGAT+AGG | 0.522801 | tig0016715:+324731 | None:intergenic |
| GAAGAACTTGTCTGTTATGT+CGG | 0.539343 | tig0016715:-324985 | Msa1359600:three_prime_UTR |
| TAACAGACAAGTTCTTCCCT+TGG | 0.551586 | tig0016715:+324991 | None:intergenic |
| AGGTGAGTTGATTATAGTTG+AGG | 0.553886 | tig0016715:-324653 | None:intergenic |
| ATGACTATTGGCAATTAGCA+TGG | 0.553974 | tig0016715:-324855 | Msa1359600:three_prime_UTR |
| TCCATCTCTCTTGCTATCGA+TGG | 0.553990 | tig0016715:-327559 | Msa1359600:intron |
| ATGACTTGTTTGCTTTGTGG+TGG | 0.563337 | tig0016715:-324676 | Msa1359600:three_prime_UTR |
| GCATATGTGGACTGTATGAA+AGG | 0.565109 | tig0016715:-326206 | Msa1359600:CDS |
| TATCAAGCAACATAGCCATC+GGG | 0.569162 | tig0016715:+324955 | None:intergenic |
| CTTACCATAGCAGAAGAAGA+AGG | 0.570397 | tig0016715:+327747 | None:intergenic |
| ATATCAAGCAACATAGCCAT+CGG | 0.572845 | tig0016715:+324954 | None:intergenic |
| AGATAAGGATTTGTTTAACA+AGG | 0.574289 | tig0016715:+324789 | None:intergenic |
| ATCATAAGAGATATTTCTGA+CGG | 0.580337 | tig0016715:+326161 | None:intergenic |
| AAGTCGAAATTACCACTGTA+CGG | 0.584562 | tig0016715:-327893 | Msa1359600:five_prime_UTR |
| GCAGAAGAAGAAGGATGAAG+AGG | 0.586126 | tig0016715:+327756 | None:intergenic |
| ACTTTCCCTATGATCGAGAG+TGG | 0.592959 | tig0016715:-325100 | Msa1359600:CDS |
| GATCTCTACAACTTCATAGA+CGG | 0.620195 | tig0016715:-326132 | Msa1359600:CDS |
| ACCATCGATAGCAAGAGAGA+TGG | 0.627765 | tig0016715:+327558 | None:intergenic |
| AATGTAAAGAAAATCACCAA+GGG | 0.632124 | tig0016715:-325007 | Msa1359600:three_prime_UTR |
| ACTGTATGAAAGGAAACTGA+AGG | 0.645635 | tig0016715:-326196 | Msa1359600:CDS |
| ACACTCGAATAAACAAGACT+CGG | 0.656856 | tig0016715:+327859 | None:intergenic |
| TATGTCGGCTATACTCCCGA+TGG | 0.682811 | tig0016715:-324970 | Msa1359600:three_prime_UTR |
| TAGCCATAGAACACTTGACA+AGG | 0.686553 | tig0016715:+324822 | None:intergenic |
| AAATGTAAAGAAAATCACCA+AGG | 0.692225 | tig0016715:-325008 | Msa1359600:three_prime_UTR |
| TTATTCGAGTGTGTGTAGTG+CGG | 0.714551 | tig0016715:-327848 | Msa1359600:five_prime_UTR |
| GACAAGACAAGACCGTACAG+TGG | 0.735850 | tig0016715:+327881 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATACGAAAAAATAATAA+AGG | + | tig0016715:326051-326070 | None:intergenic | 10.0% |
| !! | ATTCTTTCAAATTTCAAATT+AGG | - | tig0016715:324844-324863 | Msa1359600:three_prime_UTR | 15.0% |
| !!! | CAGATTATATATTAGTTTAT+CGG | + | tig0016715:325270-325289 | None:intergenic | 15.0% |
| !!! | CGTTTTTTTTTTTTTGTTTT+TGG | - | tig0016715:325319-325338 | Msa1359600:intron | 15.0% |
| !!! | CCAATTTTATTATAAGAATA+AGG | + | tig0016715:325696-325715 | None:intergenic | 15.0% |
| !! | CCTTATTCTTATAATAAAAT+TGG | - | tig0016715:325693-325712 | Msa1359600:intron | 15.0% |
| !! | AAACATCATAATATTTAAAC+AGG | + | tig0016715:325732-325751 | None:intergenic | 15.0% |
| !! | TGTTTAAATATTATGATGTT+TGG | - | tig0016715:325731-325750 | Msa1359600:intron | 15.0% |
| !!! | ATTTAATTGCTAAAATTTTG+GGG | + | tig0016715:327523-327542 | None:intergenic | 15.0% |
| !!! | CATTTAATTGCTAAAATTTT+GGG | + | tig0016715:327524-327543 | None:intergenic | 15.0% |
| !!! | ACATTTAATTGCTAAAATTT+TGG | + | tig0016715:327525-327544 | None:intergenic | 15.0% |
| !! | TAATTAATTGCTTTAATCAC+AGG | - | tig0016715:324888-324907 | Msa1359600:three_prime_UTR | 20.0% |
| !! | AGAAGTTTGAATTAGAATAA+TGG | + | tig0016715:324932-324951 | None:intergenic | 20.0% |
| !!! | TGTATTTTATTCTATGCATT+TGG | - | tig0016715:325087-325106 | Msa1359600:CDS | 20.0% |
| !!! | CTATTTTCTTGTTTTTGATT+AGG | - | tig0016715:325113-325132 | Msa1359600:CDS | 20.0% |
| !! | GTTAAAACCAAAATATTACA+AGG | + | tig0016715:325415-325434 | None:intergenic | 20.0% |
| !!! | ATATGGTTTTCATTAATTTG+TGG | - | tig0016715:325516-325535 | Msa1359600:intron | 20.0% |
| !!! | CTAATCTGTTATATTTCTAT+AGG | + | tig0016715:325560-325579 | None:intergenic | 20.0% |
| !! | TAGAGAAACTGTTTAAATAT+TGG | - | tig0016715:325660-325679 | Msa1359600:intron | 20.0% |
| !! | CAAAATAAACACAAACTTTA+CGG | + | tig0016715:325818-325837 | None:intergenic | 20.0% |
| !!! | TTATTTTCTAGGTTGTTAAT+AGG | - | tig0016715:325964-325983 | Msa1359600:intron | 20.0% |
| !!! | TATTTTCTAGGTTGTTAATA+GGG | - | tig0016715:325965-325984 | Msa1359600:intron | 20.0% |
| !!! | TATTCTTTGTTGATACTTTT+AGG | - | tig0016715:326070-326089 | Msa1359600:intron | 20.0% |
| !!! | ATTCTTTGTTGATACTTTTA+GGG | - | tig0016715:326071-326090 | Msa1359600:intron | 20.0% |
| !! | AAGTATCAACAAAGAATAAA+GGG | + | tig0016715:326267-326286 | None:intergenic | 20.0% |
| !!! | AAAGTATCAACAAAGAATAA+AGG | + | tig0016715:326268-326287 | None:intergenic | 20.0% |
| !!! | TTTTAATCATGTGTTTTTAC+AGG | - | tig0016715:326319-326338 | Msa1359600:intron | 20.0% |
| !! | AAATATCTCTTATGATATCA+TGG | - | tig0016715:326393-326412 | Msa1359600:intron | 20.0% |
| !! | ACAAAAGAGAAAAAAGTAAA+TGG | - | tig0016715:326792-326811 | Msa1359600:intron | 20.0% |
| !! | AATAACTTATTCTTGAATCA+TGG | + | tig0016715:326860-326879 | None:intergenic | 20.0% |
| !!! | CTTAATTTTCATTTGATTCA+TGG | + | tig0016715:327043-327062 | None:intergenic | 20.0% |
| !! | TCAAATGAAAATTAAGAGTA+TGG | - | tig0016715:327047-327066 | Msa1359600:intron | 20.0% |
| !!! | CAAATGAAAATTAAGAGTAT+GGG | - | tig0016715:327048-327067 | Msa1359600:intron | 20.0% |
| !!! | TGATTGCTCTTTTATATATT+GGG | - | tig0016715:327333-327352 | Msa1359600:intron | 20.0% |
| !! | TTAATTATAGATGTTAGGAT+AGG | + | tig0016715:327819-327838 | None:intergenic | 20.0% |
| !!! | CCTTTTTAATTATAGATGTT+AGG | + | tig0016715:327824-327843 | None:intergenic | 20.0% |
| !! | CCTAACATCTATAATTAAAA+AGG | - | tig0016715:327821-327840 | Msa1359600:five_prime_UTR | 20.0% |
| ! | TATAGTAGTCTAATAGTTAG+AGG | - | tig0016715:325625-325644 | Msa1359600:intron | 25.0% |
| !! | CGTAAAGTTTGTGTTTATTT+TGG | - | tig0016715:325816-325835 | Msa1359600:intron | 25.0% |
| !! | ACATCTGGAAATTATTTTCT+AGG | - | tig0016715:325953-325972 | Msa1359600:intron | 25.0% |
| !! | ATTTTCTAGGTTGTTAATAG+GGG | - | tig0016715:325966-325985 | Msa1359600:intron | 25.0% |
| ! | ATAATAAAGGATGTAAATCC+CGG | + | tig0016715:326038-326057 | None:intergenic | 25.0% |
| !! | TTCTTTGTTGATACTTTTAG+GGG | - | tig0016715:326072-326091 | Msa1359600:intron | 25.0% |
| ! | TCATTATCAGCATTAAATAG+AGG | - | tig0016715:326296-326315 | Msa1359600:intron | 25.0% |
| !! | ATCATAAGAGATATTTCTGA+CGG | + | tig0016715:326389-326408 | None:intergenic | 25.0% |
| !! | TTTTTCATTAAGTAGTTGCT+TGG | - | tig0016715:326684-326703 | Msa1359600:intron | 25.0% |
| !! | TGGTCATATTTTGTTGAATT+TGG | - | tig0016715:326704-326723 | Msa1359600:intron | 25.0% |
| ! | GAGAAAAAAGTAAATGGTAA+AGG | - | tig0016715:326798-326817 | Msa1359600:intron | 25.0% |
| ! | AAAAGTAAATGGTAAAGGAA+AGG | - | tig0016715:326803-326822 | Msa1359600:intron | 25.0% |
| !! | TTTTAAACAGAACAGACTAA+CGG | + | tig0016715:326939-326958 | None:intergenic | 25.0% |
| !! | CTGTTTAAAACACTACAATT+TGG | - | tig0016715:326949-326968 | Msa1359600:intron | 25.0% |
| !!! | TCCTAATATTTTTGTCAAGA+GGG | + | tig0016715:327265-327284 | None:intergenic | 25.0% |
| !!! | TTCCTAATATTTTTGTCAAG+AGG | + | tig0016715:327266-327285 | None:intergenic | 25.0% |
| ! | TACATAAGACAGTTGAATAA+AGG | + | tig0016715:327311-327330 | None:intergenic | 25.0% |
| !! | GTGATTGCTCTTTTATATAT+TGG | - | tig0016715:327332-327351 | Msa1359600:intron | 25.0% |
| ! | CAATTTCTTCAAATGTTGAA+AGG | + | tig0016715:327486-327505 | None:intergenic | 25.0% |
| ! | CTTTCAACATTTGAAGAAAT+TGG | - | tig0016715:327484-327503 | Msa1359600:intron | 25.0% |
| ! | AAATGTAAAGAAAATCACCA+AGG | - | tig0016715:327539-327558 | Msa1359600:intron | 25.0% |
| ! | AATGTAAAGAAAATCACCAA+GGG | - | tig0016715:327540-327559 | Msa1359600:intron | 25.0% |
| !!! | TTTCTGAAACAAATGACTAT+TGG | - | tig0016715:327680-327699 | Msa1359600:intron | 25.0% |
| !! | AGATAAGGATTTGTTTAACA+AGG | + | tig0016715:327761-327780 | None:intergenic | 25.0% |
| !!! | TTGTTGGTTTTTCACGTTTA+TGG | + | tig0016715:324725-324744 | None:intergenic | 30.0% |
| ! | CGTGTTAGTATAGTTTTTGT+TGG | + | tig0016715:324741-324760 | None:intergenic | 30.0% |
| AATGATGAAAGTGAAGTGAT+AGG | + | tig0016715:325046-325065 | None:intergenic | 30.0% | |
| TCACTTCACTTTCATCATTT+AGG | - | tig0016715:325047-325066 | Msa1359600:exon | 30.0% | |
| TGAAAGAATTGGTAGGATTT+GGG | - | tig0016715:325149-325168 | Msa1359600:intron | 30.0% | |
| TTACAAGGAGAATGCTAAAA+GGG | + | tig0016715:325400-325419 | None:intergenic | 30.0% | |
| ATTACAAGGAGAATGCTAAA+AGG | + | tig0016715:325401-325420 | None:intergenic | 30.0% | |
| ! | GCATTCTCCTTGTAATATTT+TGG | - | tig0016715:325405-325424 | Msa1359600:intron | 30.0% |
| !!! | TTTGGTTTTAACTGTGACTT+TGG | - | tig0016715:325423-325442 | Msa1359600:intron | 30.0% |
| TTTGGCAGAAGAAGAATAAA+TGG | - | tig0016715:325455-325474 | Msa1359600:intron | 30.0% | |
| GCATTAGCATCAAGAATATA+TGG | - | tig0016715:325499-325518 | Msa1359600:intron | 30.0% | |
| GACTTATGAAAACCCAAATA+AGG | - | tig0016715:325587-325606 | Msa1359600:intron | 30.0% | |
| ! | CTAATTCGTTCTCCTTATTT+GGG | + | tig0016715:325602-325621 | None:intergenic | 30.0% |
| TCTAATTCGTTCTCCTTATT+TGG | + | tig0016715:325603-325622 | None:intergenic | 30.0% | |
| GAACATACTGTTTCAATATG+TGG | - | tig0016715:325889-325908 | Msa1359600:intron | 30.0% | |
| ! | TCTTTGTTGATACTTTTAGG+GGG | - | tig0016715:326073-326092 | Msa1359600:intron | 30.0% |
| ATTGTTTCAATGTGACTGAA+AGG | - | tig0016715:326117-326136 | Msa1359600:CDS | 30.0% | |
| ! | TCTCAAAATTTTGCATGCAT+AGG | - | tig0016715:326475-326494 | Msa1359600:intron | 30.0% |
| TTGATGTTAGAGAAAAAGTG+AGG | - | tig0016715:326607-326626 | Msa1359600:intron | 30.0% | |
| AAACACTACAATTTGGATCA+AGG | - | tig0016715:326956-326975 | Msa1359600:intron | 30.0% | |
| ACCCTCTTGACAAAAATATT+AGG | - | tig0016715:327261-327280 | Msa1359600:intron | 30.0% | |
| TAGGAAAATGAAGTGAACTT+AGG | - | tig0016715:327280-327299 | Msa1359600:intron | 30.0% | |
| TTCTTTACTTGCAGTTATGA+TGG | - | tig0016715:327410-327429 | Msa1359600:intron | 30.0% | |
| CAGCTAAATAGTACAAGATA+AGG | + | tig0016715:327776-327795 | None:intergenic | 30.0% | |
| ! | TGCAAATGCATTTTCTTATC+TGG | - | tig0016715:327847-327866 | Msa1359600:five_prime_UTR | 30.0% |
| ACACTCGAATAAACAAGACT+CGG | + | tig0016715:324691-324710 | None:intergenic | 35.0% | |
| GATGAAGAGGAAGAAGAAAA+TGG | + | tig0016715:324781-324800 | None:intergenic | 35.0% | |
| GTGAAAATCCATGAAAGTTC+TGG | + | tig0016715:324968-324987 | None:intergenic | 35.0% | |
| GTGAAAGAATTGGTAGGATT+TGG | - | tig0016715:325148-325167 | Msa1359600:intron | 35.0% | |
| AAACTAATGCACCAAATGCT+TGG | + | tig0016715:325363-325382 | None:intergenic | 35.0% | |
| !! | AAGCATTTGGTGCATTAGTT+TGG | - | tig0016715:325362-325381 | Msa1359600:intron | 35.0% |
| TTAACTGTGACTTTGGATTG+TGG | - | tig0016715:325430-325449 | Msa1359600:intron | 35.0% | |
| TGACTTTGGATTGTGGAATT+TGG | - | tig0016715:325437-325456 | Msa1359600:intron | 35.0% | |
| ATTTGTGGAACGCATACTAT+AGG | - | tig0016715:325531-325550 | Msa1359600:intron | 35.0% | |
| TTTGTGGAACGCATACTATA+GGG | - | tig0016715:325532-325551 | Msa1359600:intron | 35.0% | |
| AGTCTAATAGTTAGAGGTAG+AGG | - | tig0016715:325631-325650 | Msa1359600:intron | 35.0% | |
| TTATGATGTTTGGCTGTATG+AGG | - | tig0016715:325741-325760 | Msa1359600:intron | 35.0% | |
| TCATTGCTTCACAGTGATAT+AGG | - | tig0016715:325925-325944 | Msa1359600:intron | 35.0% | |
| GTGATATAGGACAATACATC+TGG | - | tig0016715:325938-325957 | Msa1359600:intron | 35.0% | |
| !! | CTTTGTTGATACTTTTAGGG+GGG | - | tig0016715:326074-326093 | Msa1359600:intron | 35.0% |
| TCTTGTGTGAAAACAAGGTA+AGG | - | tig0016715:326167-326186 | Msa1359600:CDS | 35.0% | |
| GTTGCATACAATACACCAAA+TGG | - | tig0016715:326189-326208 | Msa1359600:CDS | 35.0% | |
| CATACAATACACCAAATGGT+GGG | - | tig0016715:326193-326212 | Msa1359600:CDS | 35.0% | |
| !! | TGTGTTTTTACAGGCATATG+TGG | - | tig0016715:326328-326347 | Msa1359600:intron | 35.0% |
| ACTGTATGAAAGGAAACTGA+AGG | - | tig0016715:326351-326370 | Msa1359600:intron | 35.0% | |
| GATCTCTACAACTTCATAGA+CGG | - | tig0016715:326415-326434 | Msa1359600:intron | 35.0% | |
| ! | ATTTTATGCTGAGCTAGAAC+TGG | - | tig0016715:326912-326931 | Msa1359600:intron | 35.0% |
| AGCAATTGTGAGTTTGAAAG+AGG | - | tig0016715:327084-327103 | Msa1359600:intron | 35.0% | |
| AAAGAAGAGGAATCTAGAGA+GGG | + | tig0016715:327176-327195 | None:intergenic | 35.0% | |
| TAAAGAAGAGGAATCTAGAG+AGG | + | tig0016715:327177-327196 | None:intergenic | 35.0% | |
| TTCATTATGTCCTTAACTCC+AGG | + | tig0016715:327200-327219 | None:intergenic | 35.0% | |
| TTAATCCACTCTCGATCATA+GGG | + | tig0016715:327455-327474 | None:intergenic | 35.0% | |
| GAAGAACTTGTCTGTTATGT+CGG | - | tig0016715:327562-327581 | Msa1359600:CDS | 35.0% | |
| ATATCAAGCAACATAGCCAT+CGG | + | tig0016715:327596-327615 | None:intergenic | 35.0% | |
| ATGACTATTGGCAATTAGCA+TGG | - | tig0016715:327692-327711 | Msa1359600:intron | 35.0% | |
| TTATTCGAGTGTGTGTAGTG+CGG | - | tig0016715:324699-324718 | Msa1359600:three_prime_UTR | 40.0% | |
| TCATCCTTCTTCTTCTGCTA+TGG | - | tig0016715:324796-324815 | Msa1359600:three_prime_UTR | 40.0% | |
| CTTACCATAGCAGAAGAAGA+AGG | + | tig0016715:324803-324822 | None:intergenic | 40.0% | |
| TAGAGCTACCAGAACTTTCA+TGG | - | tig0016715:324957-324976 | Msa1359600:three_prime_UTR | 40.0% | |
| TCACTCCACTGTGAAAGAAT+TGG | - | tig0016715:325138-325157 | Msa1359600:intron | 40.0% | |
| TCCACTGTGAAAGAATTGGT+AGG | - | tig0016715:325142-325161 | Msa1359600:intron | 40.0% | |
| TCCTACCAATTCTTTCACAG+TGG | + | tig0016715:325146-325165 | None:intergenic | 40.0% | |
| AAGAATTGGTAGGATTTGGG+TGG | - | tig0016715:325152-325171 | Msa1359600:intron | 40.0% | |
| !! | CTAGCACTGATTCAGTGAAT+TGG | + | tig0016715:325234-325253 | None:intergenic | 40.0% |
| CAATTCACTGAATCAGTGCT+AGG | - | tig0016715:325232-325251 | Msa1359600:intron | 40.0% | |
| CTTCCTATCTACCAAGCATT+TGG | - | tig0016715:325349-325368 | Msa1359600:intron | 40.0% | |
| ! | TGGTGTAGTTGATGCAAGTA+AGG | - | tig0016715:325475-325494 | Msa1359600:intron | 40.0% |
| AAGTCCATCAACTATGTGCT+TGG | - | tig0016715:325779-325798 | Msa1359600:intron | 40.0% | |
| AACACCAAGCACATAGTTGA+TGG | + | tig0016715:325786-325805 | None:intergenic | 40.0% | |
| !!! | CAACTATGTGCTTGGTGTTT+TGG | - | tig0016715:325787-325806 | Msa1359600:intron | 40.0% |
| !!! | TTGTGTTTATTTTGGCGAGC+AGG | - | tig0016715:325824-325843 | Msa1359600:intron | 40.0% |
| CATATTGTTGAGCACAATGG+CGG | + | tig0016715:326006-326025 | None:intergenic | 40.0% | |
| GCACATATTGTTGAGCACAA+TGG | + | tig0016715:326009-326028 | None:intergenic | 40.0% | |
| CAACAATATGTGCCTCTATC+CGG | - | tig0016715:326016-326035 | Msa1359600:intron | 40.0% | |
| AACAATATGTGCCTCTATCC+GGG | - | tig0016715:326017-326036 | Msa1359600:intron | 40.0% | |
| ! | ACAATTTTACCGTTGTGCCA+AGG | + | tig0016715:326102-326121 | None:intergenic | 40.0% |
| TCAATGTGACTGAAAGGTCA+CGG | - | tig0016715:326123-326142 | Msa1359600:CDS | 40.0% | |
| GCATACAATACACCAAATGG+TGG | - | tig0016715:326192-326211 | Msa1359600:CDS | 40.0% | |
| ! | GCATATGTGGACTGTATGAA+AGG | - | tig0016715:326341-326360 | Msa1359600:intron | 40.0% |
| ! | TAAGAGATATTTCTGACGGC+TGG | + | tig0016715:326385-326404 | None:intergenic | 40.0% |
| AAACTTAACTGCCTCTCTGT+TGG | - | tig0016715:326986-327005 | Msa1359600:intron | 40.0% | |
| !! | CATTAGCTTTACCAACAGAG+AGG | + | tig0016715:327000-327019 | None:intergenic | 40.0% |
| ! | AAGAGTATGGGTGAGAACAT+TGG | - | tig0016715:327060-327079 | Msa1359600:intron | 40.0% |
| AAGAGGTCTTAAACCCTTGA+AGG | - | tig0016715:327101-327120 | Msa1359600:intron | 40.0% | |
| CCAACACATTACTCCTTCAA+GGG | + | tig0016715:327117-327136 | None:intergenic | 40.0% | |
| TCCAACACATTACTCCTTCA+AGG | + | tig0016715:327118-327137 | None:intergenic | 40.0% | |
| AAGAAGAGGAATCTAGAGAG+GGG | + | tig0016715:327175-327194 | None:intergenic | 40.0% | |
| CTAGATTCCTCTTCTTTACC+TGG | - | tig0016715:327179-327198 | Msa1359600:intron | 40.0% | |
| CTTAACTCCAGGTAAAGAAG+AGG | + | tig0016715:327189-327208 | None:intergenic | 40.0% | |
| CTCTTCTTTACCTGGAGTTA+AGG | - | tig0016715:327187-327206 | Msa1359600:intron | 40.0% | |
| TTTGTCAAGAGGGTTACAAC+AGG | + | tig0016715:327255-327274 | None:intergenic | 40.0% | |
| GTTTGCCTTGGAATTGGTTA+AGG | - | tig0016715:327375-327394 | Msa1359600:intron | 40.0% | |
| GCAAGTAAAGAACAACCAAC+CGG | + | tig0016715:327402-327421 | None:intergenic | 40.0% | |
| CTTAATCCACTCTCGATCAT+AGG | + | tig0016715:327456-327475 | None:intergenic | 40.0% | |
| !! | CTATGATCGAGAGTGGATTA+AGG | - | tig0016715:327454-327473 | Msa1359600:intron | 40.0% |
| TAACAGACAAGTTCTTCCCT+TGG | + | tig0016715:327559-327578 | None:intergenic | 40.0% | |
| TATCAAGCAACATAGCCATC+GGG | + | tig0016715:327595-327614 | None:intergenic | 40.0% | |
| CATCCTTGTCAAGTGTTCTA+TGG | - | tig0016715:327722-327741 | Msa1359600:intron | 40.0% | |
| TAGCCATAGAACACTTGACA+AGG | + | tig0016715:327728-327747 | None:intergenic | 40.0% | |
| !! | ATGACTTGTTTGCTTTGTGG+TGG | - | tig0016715:327871-327890 | Msa1359600:five_prime_UTR | 40.0% |
| GCAGAAGAAGAAGGATGAAG+AGG | + | tig0016715:324794-324813 | None:intergenic | 45.0% | |
| ! | TCCATCTCTCTTGCTATCGA+TGG | - | tig0016715:324988-325007 | Msa1359600:three_prime_UTR | 45.0% |
| ACCATCGATAGCAAGAGAGA+TGG | + | tig0016715:324992-325011 | None:intergenic | 45.0% | |
| GCACCAAATGCTTGGTAGAT+AGG | + | tig0016715:325355-325374 | None:intergenic | 45.0% | |
| AGGATGTAAATCCCGGATAG+AGG | + | tig0016715:326031-326050 | None:intergenic | 45.0% | |
| CAATGTGACTGAAAGGTCAC+GGG | - | tig0016715:326124-326143 | Msa1359600:CDS | 45.0% | |
| CAGGCTCTTGTGTGAAAACA+AGG | - | tig0016715:326162-326181 | Msa1359600:CDS | 45.0% | |
| ACAAAGAATAAAGGGCAGCC+CGG | + | tig0016715:326259-326278 | None:intergenic | 45.0% | |
| GAGAAAAAGTGAGGTGAGAG+AGG | - | tig0016715:326616-326635 | Msa1359600:intron | 45.0% | |
| ! | CTGATGCTTCGAGCTTTTCA+TGG | - | tig0016715:326644-326663 | Msa1359600:intron | 45.0% |
| TGGTAAAGGAAAGGCAAGAG+AGG | - | tig0016715:326812-326831 | Msa1359600:intron | 45.0% | |
| CCCTTGAAGGAGTAATGTGT+TGG | - | tig0016715:327114-327133 | Msa1359600:intron | 45.0% | |
| GAAGGAGTAATGTGTTGGAG+TGG | - | tig0016715:327119-327138 | Msa1359600:intron | 45.0% | |
| AGAAGAGGAATCTAGAGAGG+GGG | + | tig0016715:327174-327193 | None:intergenic | 45.0% | |
| ! | TGTGTGGTTTGCCTTGGAAT+TGG | - | tig0016715:327369-327388 | Msa1359600:intron | 45.0% |
| CCTTGGAATTGGTTAAGGAC+CGG | - | tig0016715:327380-327399 | Msa1359600:intron | 45.0% | |
| ACTTTCCCTATGATCGAGAG+TGG | - | tig0016715:327447-327466 | Msa1359600:intron | 45.0% | |
| !! | GGCATGACTTGTTTGCTTTG+TGG | - | tig0016715:327868-327887 | Msa1359600:five_prime_UTR | 45.0% |
| ACTTGTTTGCTTTGTGGTGG+AGG | - | tig0016715:327874-327893 | Msa1359600:five_prime_UTR | 45.0% | |
| !!! | AGTATAATTTTATTATTTTT+TGG | + | tig0016715:326566-326585 | None:intergenic | 5.0% |
| !! | AAAAATATTGAAATTATATT+CGG | - | tig0016715:326764-326783 | Msa1359600:intron | 5.0% |
| GACAAGACAAGACCGTACAG+TGG | + | tig0016715:324669-324688 | None:intergenic | 50.0% | |
| !! | ATTTTGGCGAGCAGGATCTG+TGG | - | tig0016715:325832-325851 | Msa1359600:intron | 50.0% |
| TCACACAAGAGCCTGTTTCC+AGG | + | tig0016715:326157-326176 | None:intergenic | 50.0% | |
| GTAATGTGTTGGAGTGGCAC+TGG | - | tig0016715:327125-327144 | Msa1359600:intron | 50.0% | |
| AATCTAGAGAGGGGGGGTAA+GGG | + | tig0016715:327166-327185 | None:intergenic | 50.0% | |
| AAGAGGAATCTAGAGAGGGG+GGG | + | tig0016715:327172-327191 | None:intergenic | 50.0% | |
| GAAGAGGAATCTAGAGAGGG+GGG | + | tig0016715:327173-327192 | None:intergenic | 50.0% | |
| GGGCTTTCTTTGTGCATGTG+TGG | - | tig0016715:327353-327372 | Msa1359600:intron | 50.0% | |
| ! | TGTGCATGTGTGGTTTGCCT+TGG | - | tig0016715:327363-327382 | Msa1359600:intron | 50.0% |
| CCGGTCCTTAACCAATTCCA+AGG | + | tig0016715:327383-327402 | None:intergenic | 50.0% | |
| GGAATTGGTTAAGGACCGGT+TGG | - | tig0016715:327384-327403 | Msa1359600:intron | 50.0% | |
| ! | TATGTCGGCTATACTCCCGA+TGG | - | tig0016715:327577-327596 | Msa1359600:CDS | 50.0% |
| !!! | ATACTTTTAGGGGGGCGCCT+TGG | - | tig0016715:326082-326101 | Msa1359600:intron | 55.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | tig0016715:326136-326155 | Msa1359600:CDS | 55.0% | |
| CGGGTTCAAGTCCTGGAAAC+AGG | - | tig0016715:326143-326162 | Msa1359600:CDS | 55.0% | |
| CAAAAGCTCCCGCATACGCA+GGG | + | tig0016715:326232-326251 | None:intergenic | 55.0% | |
| ACAAAAGCTCCCGCATACGC+AGG | + | tig0016715:326233-326252 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTTGTGCAC+CGG | - | tig0016715:326237-326256 | Msa1359600:intron | 55.0% |
| GAATCTAGAGAGGGGGGGTA+AGG | + | tig0016715:327167-327186 | None:intergenic | 55.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | tig0016715:326205-326224 | Msa1359600:CDS | 60.0% |
| ! | TGCGGGAGCTTTTGTGCACC+GGG | - | tig0016715:326238-326257 | Msa1359600:intron | 60.0% |
| GAGAGGGGGGGTAAGGGAAA+GGG | + | tig0016715:327160-327179 | None:intergenic | 60.0% | |
| AGAGAGGGGGGGTAAGGGAA+AGG | + | tig0016715:327161-327180 | None:intergenic | 60.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | tig0016715:326207-326226 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | tig0016715:326220-326239 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | tig0016715:326221-326240 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | tig0016715:326220-326239 | Msa1359600:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | tig0016715:326221-326240 | Msa1359600:intron | 65.0% | |
| !! | AGGGGGGCGCCTTGGCACAA+CGG | - | tig0016715:326090-326109 | Msa1359600:intron | 70.0% |
| CGCATACGCAGGGTCCGGGA+AGG | + | tig0016715:326222-326241 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | tig0016715:326226-326245 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | tig0016715:326227-326246 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016715 | gene | 324656 | 327913 | 324656 | ID=Msa1359600;Name=Msa1359600 |
| tig0016715 | mRNA | 324656 | 327913 | 324656 | ID=Msa1359600-mRNA-1;Parent=Msa1359600;Name=Msa1359600-mRNA-1;_AED=0.01;_eAED=0.01;_QI=159|1|1|1|1|1|4|399|104 |
| tig0016715 | exon | 324656 | 325145 | 324656 | ID=Msa1359600-mRNA-1:exon:11505;Parent=Msa1359600-mRNA-1 |
| tig0016715 | exon | 326108 | 326228 | 326108 | ID=Msa1359600-mRNA-1:exon:11504;Parent=Msa1359600-mRNA-1 |
| tig0016715 | exon | 327560 | 327659 | 327560 | ID=Msa1359600-mRNA-1:exon:11503;Parent=Msa1359600-mRNA-1 |
| tig0016715 | exon | 327752 | 327913 | 327752 | ID=Msa1359600-mRNA-1:exon:11502;Parent=Msa1359600-mRNA-1 |
| tig0016715 | five_prime_UTR | 327755 | 327913 | 327755 | ID=Msa1359600-mRNA-1:five_prime_utr;Parent=Msa1359600-mRNA-1 |
| tig0016715 | CDS | 327752 | 327754 | 327752 | ID=Msa1359600-mRNA-1:cds;Parent=Msa1359600-mRNA-1 |
| tig0016715 | CDS | 327560 | 327659 | 327560 | ID=Msa1359600-mRNA-1:cds;Parent=Msa1359600-mRNA-1 |
| tig0016715 | CDS | 326108 | 326228 | 326108 | ID=Msa1359600-mRNA-1:cds;Parent=Msa1359600-mRNA-1 |
| tig0016715 | CDS | 325055 | 325145 | 325055 | ID=Msa1359600-mRNA-1:cds;Parent=Msa1359600-mRNA-1 |
| tig0016715 | three_prime_UTR | 324656 | 325054 | 324656 | ID=Msa1359600-mRNA-1:three_prime_utr;Parent=Msa1359600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
