AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1403680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403680 MtrunA17_Chr1g0150021 94.231 104 6 0 1 104 1 104 3.28e-70 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403680 AT5G10810.1 74.257 101 26 0 3 103 5 105 1.46e-53 163

Find 46 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTTAATTGCTAAAATTT+TGG 0.074131 tig0022974:+51973 None:intergenic
CTTTCAACATTTGAAGAAAT+TGG 0.132075 tig0022974:-52011 Msa1403680:CDS
TATCCTTGTCAAGTGTTCTA+TGG 0.259897 tig0022974:-51773 Msa1403680:three_prime_UTR
CCTAACATCTATAATTAAAA+AGG 0.326247 tig0022974:-51674 Msa1403680:three_prime_UTR
TAGAGCTACCAGAACTTTCA+TGG 0.334223 tig0022974:-55084 Msa1403680:CDS
CTTAATCCACTCTCGATCAT+AGG 0.344190 tig0022974:+52042 None:intergenic
TTCTTTACTTGCAGTTATGA+TGG 0.351370 tig0022974:-52085 Msa1403680:intron
GTGAAAATCCATGAAAGTTC+TGG 0.356886 tig0022974:+55076 None:intergenic
TTTCTGAAACAAATGACTAT+TGG 0.358570 tig0022974:-51815 Msa1403680:three_prime_UTR
GATGAAGAGGAAGAAGAAAA+TGG 0.362190 tig0022974:+55263 None:intergenic
GGCATGACTTGTTTGCTTTG+TGG 0.363561 tig0022974:-51627 Msa1403680:three_prime_UTR
CTATGATCGAGAGTGGATTA+AGG 0.376363 tig0022974:-52041 Msa1403680:CDS
AGAAGTTTGAATTAGAATAA+TGG 0.430839 tig0022974:+55112 None:intergenic
CAGCTAAATAGTACAAGATA+AGG 0.431445 tig0022974:+51722 None:intergenic
TAAGAGATATTTCTGACGGC+TGG 0.446674 tig0022974:+53144 None:intergenic
ACTTGTTTGCTTTGTGGTGG+AGG 0.452228 tig0022974:-51621 Msa1403680:three_prime_UTR
TCATCCTTCGTCTTCTGCTA+TGG 0.469680 tig0022974:-55245 Msa1403680:intron
AAATATCTCTTATGATATCA+TGG 0.475878 tig0022974:-53133 Msa1403680:CDS
CAATTTCTTCAAATGTTGAA+AGG 0.494842 tig0022974:+52012 None:intergenic
TTAATCCACTCTCGATCATA+GGG 0.515090 tig0022974:+52043 None:intergenic
TTAATTATAGATGTTAGGAT+AGG 0.522801 tig0022974:+51679 None:intergenic
GAAGAACTTGTCTGTTATGT+CGG 0.539343 tig0022974:-51933 Msa1403680:three_prime_UTR
TAACAGACAAGTTCTTCCCT+TGG 0.551586 tig0022974:+51939 None:intergenic
AGGTGAGTTGATTATAGTTG+AGG 0.553886 tig0022974:-51601 None:intergenic
ATGACTATTGGCAATTAGCA+TGG 0.553974 tig0022974:-51803 Msa1403680:three_prime_UTR
TCCATCTCTCTTGCTATCGA+TGG 0.553990 tig0022974:-55053 Msa1403680:intron
ATGACTTGTTTGCTTTGTGG+TGG 0.563337 tig0022974:-51624 Msa1403680:three_prime_UTR
GCATATGTGGACTGTATGAA+AGG 0.565109 tig0022974:-53185 Msa1403680:CDS
TATCAAGCAACATAGCCATC+GGG 0.569162 tig0022974:+51903 None:intergenic
ATATCAAGCAACATAGCCAT+CGG 0.572845 tig0022974:+51902 None:intergenic
AGATAAGGATTTGTTTAACA+AGG 0.574289 tig0022974:+51737 None:intergenic
ATCATAAGAGATATTTCTGA+CGG 0.580337 tig0022974:+53140 None:intergenic
AAGTCGAAATTACCACTGTA+CGG 0.584562 tig0022974:-55391 Msa1403680:five_prime_UTR
ACTTTCCCTATGATCGAGAG+TGG 0.592959 tig0022974:-52048 Msa1403680:CDS
GCAGAAGACGAAGGATGAAG+AGG 0.601435 tig0022974:+55250 None:intergenic
GATCTCTACAACTTCATAGA+CGG 0.620195 tig0022974:-53111 Msa1403680:CDS
ACCATCGATAGCAAGAGAGA+TGG 0.627765 tig0022974:+55052 None:intergenic
AATGTAAAGAAAATCACCAA+GGG 0.632124 tig0022974:-51955 Msa1403680:three_prime_UTR
ACTGTATGAAAGGAAACTGA+AGG 0.645635 tig0022974:-53175 Msa1403680:CDS
ACACTCGAATAAACAAGACT+CGG 0.656856 tig0022974:+55357 None:intergenic
TAGCCATAGAACACTTGACA+AGG 0.680657 tig0022974:+51770 None:intergenic
TATGTCGGCTATACTCCCGA+TGG 0.682811 tig0022974:-51918 Msa1403680:three_prime_UTR
AAATGTAAAGAAAATCACCA+AGG 0.692225 tig0022974:-51956 Msa1403680:three_prime_UTR
TCGAGTGTGTGTAATGAGTG+CGG 0.718439 tig0022974:-55342 Msa1403680:five_prime_UTR
GACAAGACAAGACCGTACAG+TGG 0.735850 tig0022974:+55379 None:intergenic
CTTACCATAGCAGAAGACGA+AGG 0.740370 tig0022974:+55241 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGATAAATTTTTGAAA+AGG + tig0022974:52838-52857 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0022974:54639-54658 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0022974:54639-54658 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0022974:54639-54658 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0022974:54639-54658 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0022974:54639-54658 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0022974:54639-54658 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0022974:54639-54658 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0022974:54639-54658 None:intergenic 100.0%
!! ATTCTTTCAAATTTCAAATT+AGG - tig0022974:51796-51815 Msa1403680:three_prime_UTR 15.0%
!!! GAGATTATATATTAGTTTAT+CGG + tig0022974:52080-52099 None:intergenic 15.0%
!!! AAAAATGATTTTTTTTAACG+TGG - tig0022974:52484-52503 Msa1403680:intron 15.0%
!!! CCAATTTTATTATAAGAATA+AGG + tig0022974:53163-53182 None:intergenic 15.0%
!! CCTTATTCTTATAATAAAAT+TGG - tig0022974:53160-53179 Msa1403680:CDS 15.0%
!! AAACATCATAATATTTAAAC+AGG + tig0022974:53199-53218 None:intergenic 15.0%
!! TGTTTAAATATTATGATGTT+TGG - tig0022974:53198-53217 Msa1403680:intron 15.0%
!! ATAATACGGAAAAATAATAA+AGG + tig0022974:53518-53537 None:intergenic 15.0%
!! TATCAACAAAGAATATAATA+CGG + tig0022974:53532-53551 None:intergenic 15.0%
!!! ATTTAATTGCTAAAATTTTG+GGG + tig0022974:55021-55040 None:intergenic 15.0%
!!! CATTTAATTGCTAAAATTTT+GGG + tig0022974:55022-55041 None:intergenic 15.0%
!!! ACATTTAATTGCTAAAATTT+TGG + tig0022974:55023-55042 None:intergenic 15.0%
!! TAATTAATTGCTTTAATCAC+AGG - tig0022974:51840-51859 Msa1403680:three_prime_UTR 20.0%
!! AGAAGTTTGAATTAGAATAA+TGG + tig0022974:51884-51903 None:intergenic 20.0%
!! TATTATGCATAGTATTCTTA+AGG + tig0022974:52102-52121 None:intergenic 20.0%
!!! TTTTGTCGTTTTTTTGTTTT+TGG - tig0022974:52123-52142 Msa1403680:intron 20.0%
!!! ATATGGTTTTCATTAATTTG+TGG - tig0022974:52320-52339 Msa1403680:intron 20.0%
!!! AAAAAGAAAGCATTATAACA+AGG + tig0022974:52640-52659 None:intergenic 20.0%
!! ATGATGAGATTTATTAGTTA+TGG - tig0022974:52674-52693 Msa1403680:intron 20.0%
!! CATAAAAAGAAAAGAAACTT+GGG + tig0022974:52732-52751 None:intergenic 20.0%
!! ACATAAAAAGAAAAGAAACT+TGG + tig0022974:52733-52752 None:intergenic 20.0%
!!! ACAAGAGTATAAAATTAAGA+TGG + tig0022974:52757-52776 None:intergenic 20.0%
!!! ATGTATATGATGTGATTTTA+AGG + tig0022974:52935-52954 None:intergenic 20.0%
!! TATCTTAAATTATGATTGAC+TGG + tig0022974:53097-53116 None:intergenic 20.0%
!! CAAAATAAACACAAACTTTA+CGG + tig0022974:53285-53304 None:intergenic 20.0%
!!! TTATTTTCTAGGTTGTTAAT+AGG - tig0022974:53431-53450 Msa1403680:intron 20.0%
!!! TATTTTCTAGGTTGTTAATA+GGG - tig0022974:53432-53451 Msa1403680:intron 20.0%
!!! TATTCTTTGTTGATACTTTT+AGG - tig0022974:53537-53556 Msa1403680:intron 20.0%
!!! ATTCTTTGTTGATACTTTTA+GGG - tig0022974:53538-53557 Msa1403680:intron 20.0%
!! AAGTATCAACAAAGAATAAA+GGG + tig0022974:53734-53753 None:intergenic 20.0%
!!! AAAGTATCAACAAAGAATAA+AGG + tig0022974:53735-53754 None:intergenic 20.0%
!!! TTTTAATCATGTGTTTTTAC+AGG - tig0022974:53786-53805 Msa1403680:intron 20.0%
!! AAATATCTCTTATGATATCA+TGG - tig0022974:53860-53879 Msa1403680:intron 20.0%
!! ACAAAAGAGAAAAAAGTAAA+TGG - tig0022974:54262-54281 Msa1403680:intron 20.0%
!! AATAACTTATTCTTGAATCA+TGG + tig0022974:54330-54349 None:intergenic 20.0%
!!! CTTAATTTTCATTTGATTCA+TGG + tig0022974:54513-54532 None:intergenic 20.0%
!! TCAAATGAAAATTAAGAGTA+TGG - tig0022974:54517-54536 Msa1403680:intron 20.0%
!!! CAAATGAAAATTAAGAGTAT+GGG - tig0022974:54518-54537 Msa1403680:intron 20.0%
!!! TGATTGCTCTTTTATATATT+GGG - tig0022974:54831-54850 Msa1403680:intron 20.0%
!! TTAATTATAGATGTTAGGAT+AGG + tig0022974:55317-55336 None:intergenic 20.0%
!!! CCTTTTTAATTATAGATGTT+AGG + tig0022974:55322-55341 None:intergenic 20.0%
!! CCTAACATCTATAATTAAAA+AGG - tig0022974:55319-55338 Msa1403680:five_prime_UTR 20.0%
! TTACAATGACAATGCTAAAA+GGG + tig0022974:52204-52223 None:intergenic 25.0%
! ATTACAATGACAATGCTAAA+AGG + tig0022974:52205-52224 None:intergenic 25.0%
!! GCATTGTCATTGTAATATTT+TGG - tig0022974:52209-52228 Msa1403680:intron 25.0%
! TGAAAACCATATATTCTTGA+TGG + tig0022974:52312-52331 None:intergenic 25.0%
! CTAATCTGTTATATTTCTCT+AGG + tig0022974:52364-52383 None:intergenic 25.0%
! GACTTATGAAAATCCAAATA+AGG - tig0022974:52391-52410 Msa1403680:intron 25.0%
! ATACATTTGTTCTCCTTATT+TGG + tig0022974:52407-52426 None:intergenic 25.0%
! TATAGTAGTCTAATAGTTAG+AGG - tig0022974:52424-52443 Msa1403680:intron 25.0%
! TAAGAATTCAACACATCAAA+AGG - tig0022974:52803-52822 Msa1403680:intron 25.0%
!!! TATATGATGTGATTTTAAGG+AGG + tig0022974:52932-52951 None:intergenic 25.0%
!! CGTAAAGTTTGTGTTTATTT+TGG - tig0022974:53283-53302 Msa1403680:intron 25.0%
!! ACATCTGGAAATTATTTTCT+AGG - tig0022974:53420-53439 Msa1403680:intron 25.0%
!! ATTTTCTAGGTTGTTAATAG+GGG - tig0022974:53433-53452 Msa1403680:intron 25.0%
! ATAATAAAGGATGTAAATCC+CGG + tig0022974:53505-53524 None:intergenic 25.0%
!! TTCTTTGTTGATACTTTTAG+GGG - tig0022974:53539-53558 Msa1403680:intron 25.0%
! TCATTATCAGCATTAAATAG+AGG - tig0022974:53763-53782 Msa1403680:intron 25.0%
!! ATCATAAGAGATATTTCTGA+CGG + tig0022974:53856-53875 None:intergenic 25.0%
!! TTTTTCATTAAGTAGTTGCT+TGG - tig0022974:54154-54173 Msa1403680:intron 25.0%
! GAGAAAAAAGTAAATGGTAA+AGG - tig0022974:54268-54287 Msa1403680:intron 25.0%
! AAAAGTAAATGGTAAAGGAA+AGG - tig0022974:54273-54292 Msa1403680:intron 25.0%
!! TTTTAAACAGAACAGACTAA+CGG + tig0022974:54409-54428 None:intergenic 25.0%
!! CTGTTTAAAACACTACAATT+TGG - tig0022974:54419-54438 Msa1403680:intron 25.0%
!!! TCCTAATATTTTTGTCAAGA+GGG + tig0022974:54763-54782 None:intergenic 25.0%
!!! TTCCTAATATTTTTGTCAAG+AGG + tig0022974:54764-54783 None:intergenic 25.0%
! TACATAAGACAGTTGAATAA+AGG + tig0022974:54809-54828 None:intergenic 25.0%
!! GTGATTGCTCTTTTATATAT+TGG - tig0022974:54830-54849 Msa1403680:intron 25.0%
! CAATTTCTTCAAATGTTGAA+AGG + tig0022974:54984-55003 None:intergenic 25.0%
! CTTTCAACATTTGAAGAAAT+TGG - tig0022974:54982-55001 Msa1403680:intron 25.0%
! AAATGTAAAGAAAATCACCA+AGG - tig0022974:55037-55056 Msa1403680:intron 25.0%
! AATGTAAAGAAAATCACCAA+GGG - tig0022974:55038-55057 Msa1403680:intron 25.0%
!!! TTTCTGAAACAAATGACTAT+TGG - tig0022974:55178-55197 Msa1403680:intron 25.0%
!! AGATAAGGATTTGTTTAACA+AGG + tig0022974:55259-55278 None:intergenic 25.0%
!!! TTGTTGGTTTTTCACGTTTA+TGG + tig0022974:51677-51696 None:intergenic 30.0%
! CGTGTAAGTATAGTTTTTGT+TGG + tig0022974:51693-51712 None:intergenic 30.0%
ATGGTAATAACCATCTACTT+GGG - tig0022974:51959-51978 Msa1403680:three_prime_UTR 30.0%
!!! TTTGGTTTTAACTGTGACTT+TGG - tig0022974:52227-52246 Msa1403680:intron 30.0%
GCATTACCATCAAGAATATA+TGG - tig0022974:52303-52322 Msa1403680:intron 30.0%
TCTGGACATGATTTATGATT+GGG - tig0022974:52512-52531 Msa1403680:intron 30.0%
!! GTGATTTTAAGGAGGAATTA+AGG + tig0022974:52924-52943 None:intergenic 30.0%
! ATCACGATTGCATTTAAAAC+AGG + tig0022974:52978-52997 None:intergenic 30.0%
! TAATTTAAGATACTTTCGCG+AGG - tig0022974:53105-53124 Msa1403680:CDS 30.0%
GTGTTATGGACTTCAAAAAT+TGG - tig0022974:53127-53146 Msa1403680:CDS 30.0%
GAACATACTGTTTCAATATG+TGG - tig0022974:53356-53375 Msa1403680:intron 30.0%
! TCTTTGTTGATACTTTTAGG+GGG - tig0022974:53540-53559 Msa1403680:intron 30.0%
ATTGTTTCAATGTGACTGAA+AGG - tig0022974:53584-53603 Msa1403680:intron 30.0%
! TCTCAAAATTTTGCATGCAT+AGG - tig0022974:53942-53961 Msa1403680:intron 30.0%
TTGATGTTAGAGAAAAAGTG+AGG - tig0022974:54074-54093 Msa1403680:intron 30.0%
TGGTCATATCTTGTTGAATT+TGG - tig0022974:54174-54193 Msa1403680:intron 30.0%
AAACACTACAATTTGGATCA+AGG - tig0022974:54426-54445 Msa1403680:intron 30.0%
ACCCTCTTGACAAAAATATT+AGG - tig0022974:54759-54778 Msa1403680:intron 30.0%
TAGGAAAATGAAGTGAACTT+AGG - tig0022974:54778-54797 Msa1403680:intron 30.0%
TTCTTTACTTGCAGTTATGA+TGG - tig0022974:54908-54927 Msa1403680:intron 30.0%
CAGCTAAATAGTACAAGATA+AGG + tig0022974:55274-55293 None:intergenic 30.0%
! TGCAAATGCATTTTCTTATC+TGG - tig0022974:55345-55364 Msa1403680:five_prime_UTR 30.0%
ACACTCGAATAAACAAGACT+CGG + tig0022974:51639-51658 None:intergenic 35.0%
GATGAAGAGGAAGAAGAAAA+TGG + tig0022974:51733-51752 None:intergenic 35.0%
GTGAAAATCCATGAAAGTTC+TGG + tig0022974:51920-51939 None:intergenic 35.0%
GATGGTAATAACCATCTACT+TGG - tig0022974:51958-51977 Msa1403680:three_prime_UTR 35.0%
AAACTAATGCACCAAATGCT+TGG + tig0022974:52167-52186 None:intergenic 35.0%
!! AAGCATTTGGTGCATTAGTT+TGG - tig0022974:52166-52185 Msa1403680:intron 35.0%
TTAACTGTGACTTTGGATTG+TGG - tig0022974:52234-52253 Msa1403680:intron 35.0%
TGACTTTGGATTGTGGAATT+TGG - tig0022974:52241-52260 Msa1403680:intron 35.0%
TTTGGCAGAGGAAGAATAAA+TGG - tig0022974:52259-52278 Msa1403680:intron 35.0%
ATTTGTGGAACGCATACTAT+AGG - tig0022974:52335-52354 Msa1403680:intron 35.0%
TTTGTGGAACGCATACTATA+GGG - tig0022974:52336-52355 Msa1403680:intron 35.0%
AGTCTAATAGTTAGAGGTAG+AGG - tig0022974:52430-52449 Msa1403680:intron 35.0%
!!! TTTTTTAACGTGGTTTGCTC+TGG - tig0022974:52494-52513 Msa1403680:intron 35.0%
CTCTGGACATGATTTATGAT+TGG - tig0022974:52511-52530 Msa1403680:intron 35.0%
AGTAAGAAAACGACAGTGAA+AGG + tig0022974:52575-52594 None:intergenic 35.0%
! ATCTAAAACCCATCAAACAC+AGG - tig0022974:52850-52869 Msa1403680:intron 35.0%
AATCAGTACCTGTGTTTGAT+GGG + tig0022974:52861-52880 None:intergenic 35.0%
TAATCAGTACCTGTGTTTGA+TGG + tig0022974:52862-52881 None:intergenic 35.0%
TAAGGAGGAATTAAGGCAAT+TGG + tig0022974:52917-52936 None:intergenic 35.0%
! CATTTAAAACAGGCGATTGA+AGG + tig0022974:52968-52987 None:intergenic 35.0%
TATTGATGTAAGCAGCGAAA+TGG + tig0022974:53021-53040 None:intergenic 35.0%
TTATGATGTTTGGCTGTATG+AGG - tig0022974:53208-53227 Msa1403680:intron 35.0%
TCATTGCTTCACAGTGATAT+AGG - tig0022974:53392-53411 Msa1403680:intron 35.0%
GTGATATAGGACAATACATC+TGG - tig0022974:53405-53424 Msa1403680:intron 35.0%
!! CTTTGTTGATACTTTTAGGG+GGG - tig0022974:53541-53560 Msa1403680:intron 35.0%
TCTTGTGTGAAAACAAGGTA+AGG - tig0022974:53634-53653 Msa1403680:intron 35.0%
GTTGCATACAATACACCAAA+TGG - tig0022974:53656-53675 Msa1403680:intron 35.0%
CATACAATACACCAAATGGT+GGG - tig0022974:53660-53679 Msa1403680:intron 35.0%
!! TGTGTTTTTACAGGCATATG+TGG - tig0022974:53795-53814 Msa1403680:intron 35.0%
ACTGTATGAAAGGAAACTGA+AGG - tig0022974:53818-53837 Msa1403680:intron 35.0%
GATCTCTACAACTTCATAGA+CGG - tig0022974:53882-53901 Msa1403680:intron 35.0%
! ATTTTATGCTGAGCTAGAAC+TGG - tig0022974:54382-54401 Msa1403680:intron 35.0%
AGCAATTGTGAGTTTGAAAG+AGG - tig0022974:54554-54573 Msa1403680:intron 35.0%
TAAAGAAGAGGAATCTAGAG+GGG + tig0022974:54668-54687 None:intergenic 35.0%
GTAAAGAAGAGGAATCTAGA+GGG + tig0022974:54669-54688 None:intergenic 35.0%
TTCATTATGTCCTTAACTCC+AGG + tig0022974:54691-54710 None:intergenic 35.0%
TTAATCCACTCTCGATCATA+GGG + tig0022974:54953-54972 None:intergenic 35.0%
GAAGAACTTGTCTGTTATGT+CGG - tig0022974:55060-55079 Msa1403680:CDS 35.0%
ATATCAAGCAACATAGCCAT+CGG + tig0022974:55094-55113 None:intergenic 35.0%
ATGACTATTGGCAATTAGCA+TGG - tig0022974:55190-55209 Msa1403680:intron 35.0%
TATCCTTGTCAAGTGTTCTA+TGG - tig0022974:55220-55239 Msa1403680:intron 35.0%
TAGAGCTACCAGAACTTTCA+TGG - tig0022974:51909-51928 Msa1403680:three_prime_UTR 40.0%
GTAATAACCATCTACTTGGG+TGG - tig0022974:51962-51981 Msa1403680:three_prime_UTR 40.0%
CAATTCACTGAATCAGTGCT+AGG - tig0022974:52042-52061 Msa1403680:CDS 40.0%
CTTCCTATCTACCAAGCATT+TGG - tig0022974:52153-52172 Msa1403680:intron 40.0%
! TGGTGTAGTTGATGCAAGTA+AGG - tig0022974:52279-52298 Msa1403680:intron 40.0%
GGACAGACTAGAGTAATTGT+AGG - tig0022974:52451-52470 Msa1403680:intron 40.0%
! AAAGGCTTTTCTCACAAGGT+GGG + tig0022974:52557-52576 None:intergenic 40.0%
! AGTGAAAGGCTTTTCTCACA+AGG + tig0022974:52561-52580 None:intergenic 40.0%
CTTGTCTAAACCTACTTCCT+TGG - tig0022974:52772-52791 Msa1403680:intron 40.0%
GAATTCTTAGTTGTCTGCCA+AGG + tig0022974:52792-52811 None:intergenic 40.0%
AGGAATTAAGGCAATTGGAG+GGG + tig0022974:52912-52931 None:intergenic 40.0%
GAGGAATTAAGGCAATTGGA+GGG + tig0022974:52913-52932 None:intergenic 40.0%
ATGTAAGCAGCGAAATGGTT+AGG + tig0022974:53016-53035 None:intergenic 40.0%
AAGTCCATCAACTATGTGCT+TGG - tig0022974:53246-53265 Msa1403680:intron 40.0%
AACACCAAGCACATAGTTGA+TGG + tig0022974:53253-53272 None:intergenic 40.0%
!!! CAACTATGTGCTTGGTGTTT+TGG - tig0022974:53254-53273 Msa1403680:intron 40.0%
!!! TTGTGTTTATTTTGGCGAGC+AGG - tig0022974:53291-53310 Msa1403680:intron 40.0%
! ACAATTTTACCGTTGTGCCA+AGG + tig0022974:53569-53588 None:intergenic 40.0%
TCAATGTGACTGAAAGGTCA+CGG - tig0022974:53590-53609 Msa1403680:intron 40.0%
GCATACAATACACCAAATGG+TGG - tig0022974:53659-53678 Msa1403680:intron 40.0%
! GCATATGTGGACTGTATGAA+AGG - tig0022974:53808-53827 Msa1403680:intron 40.0%
! TAAGAGATATTTCTGACGGC+TGG + tig0022974:53852-53871 None:intergenic 40.0%
AAACTTAACTGCCTCTCTGT+TGG - tig0022974:54456-54475 Msa1403680:intron 40.0%
!! CATTAGCTTTACCAACAGAG+AGG + tig0022974:54470-54489 None:intergenic 40.0%
! AAGAGTATGGGTGAGAACAT+TGG - tig0022974:54530-54549 Msa1403680:intron 40.0%
AAGAGGTCTTAAACCCTTGA+AGG - tig0022974:54571-54590 Msa1403680:intron 40.0%
CCAACACATTACTCCTTCAA+GGG + tig0022974:54587-54606 None:intergenic 40.0%
TCCAACACATTACTCCTTCA+AGG + tig0022974:54588-54607 None:intergenic 40.0%
AAAGAAGAGGAATCTAGAGG+GGG + tig0022974:54667-54686 None:intergenic 40.0%
GGTAAAGAAGAGGAATCTAG+AGG + tig0022974:54670-54689 None:intergenic 40.0%
CTAGATTCCTCTTCTTTACC+TGG - tig0022974:54670-54689 Msa1403680:intron 40.0%
CTTAACTCCAGGTAAAGAAG+AGG + tig0022974:54680-54699 None:intergenic 40.0%
CTCTTCTTTACCTGGAGTTA+AGG - tig0022974:54678-54697 Msa1403680:intron 40.0%
TTTGTCAAGAGGGTTACAAC+AGG + tig0022974:54753-54772 None:intergenic 40.0%
GTTTGCCTTGGAATTGGTTA+AGG - tig0022974:54873-54892 Msa1403680:intron 40.0%
GCAAGTAAAGAACAACCAAC+CGG + tig0022974:54900-54919 None:intergenic 40.0%
CTTAATCCACTCTCGATCAT+AGG + tig0022974:54954-54973 None:intergenic 40.0%
!! CTATGATCGAGAGTGGATTA+AGG - tig0022974:54952-54971 Msa1403680:intron 40.0%
TAACAGACAAGTTCTTCCCT+TGG + tig0022974:55057-55076 None:intergenic 40.0%
TATCAAGCAACATAGCCATC+GGG + tig0022974:55093-55112 None:intergenic 40.0%
TAGCCATAGAACACTTGACA+AGG + tig0022974:55226-55245 None:intergenic 40.0%
!! ATGACTTGTTTGCTTTGTGG+TGG - tig0022974:55369-55388 Msa1403680:five_prime_UTR 40.0%
TCGAGTGTGTGTAATGAGTG+CGG - tig0022974:51651-51670 Msa1403680:three_prime_UTR 45.0%
TCATCCTTCGTCTTCTGCTA+TGG - tig0022974:51748-51767 Msa1403680:three_prime_UTR 45.0%
CTTACCATAGCAGAAGACGA+AGG + tig0022974:51755-51774 None:intergenic 45.0%
! TCCATCTCTCTTGCTATCGA+TGG - tig0022974:51940-51959 Msa1403680:three_prime_UTR 45.0%
ACCATCGATAGCAAGAGAGA+TGG + tig0022974:51944-51963 None:intergenic 45.0%
TCACAATCCACCCAAGTAGA+TGG + tig0022974:51972-51991 None:intergenic 45.0%
GCACCAAATGCTTGGTAGAT+AGG + tig0022974:52159-52178 None:intergenic 45.0%
TGGATTGTGGAATTTGGCAG+AGG - tig0022974:52247-52266 Msa1403680:intron 45.0%
! AAGGCTTTTCTCACAAGGTG+GGG + tig0022974:52556-52575 None:intergenic 45.0%
! GAAAGGCTTTTCTCACAAGG+TGG + tig0022974:52558-52577 None:intergenic 45.0%
ACTTGGGAATCACACAGTCA+AGG + tig0022974:52716-52735 None:intergenic 45.0%
TAGTTGTCTGCCAAGGAAGT+AGG + tig0022974:52785-52804 None:intergenic 45.0%
AGGGGGTTATACAGTAAGGT+TGG + tig0022974:52894-52913 None:intergenic 45.0%
TTGGAGGGGGTTATACAGTA+AGG + tig0022974:52898-52917 None:intergenic 45.0%
GGAATTAAGGCAATTGGAGG+GGG + tig0022974:52911-52930 None:intergenic 45.0%
GGAGGAATTAAGGCAATTGG+AGG + tig0022974:52914-52933 None:intergenic 45.0%
! GATACTTTCGCGAGGTGTTA+TGG - tig0022974:53113-53132 Msa1403680:CDS 45.0%
CGTATTGTTGAGCACAATGG+CGG + tig0022974:53473-53492 None:intergenic 45.0%
GCACGTATTGTTGAGCACAA+TGG + tig0022974:53476-53495 None:intergenic 45.0%
CAACAATACGTGCCTCTATC+CGG - tig0022974:53483-53502 Msa1403680:intron 45.0%
AACAATACGTGCCTCTATCC+GGG - tig0022974:53484-53503 Msa1403680:intron 45.0%
AGGATGTAAATCCCGGATAG+AGG + tig0022974:53498-53517 None:intergenic 45.0%
CAATGTGACTGAAAGGTCAC+GGG - tig0022974:53591-53610 Msa1403680:intron 45.0%
CAGGCTCTTGTGTGAAAACA+AGG - tig0022974:53629-53648 Msa1403680:intron 45.0%
ACAAAGAATAAAGGGCAGCC+CGG + tig0022974:53726-53745 None:intergenic 45.0%
GAGAAAAAGTGAGGTGAGAG+AGG - tig0022974:54083-54102 Msa1403680:intron 45.0%
! CTGATGCTTCGAGCTTTTCA+TGG - tig0022974:54111-54130 Msa1403680:intron 45.0%
TGGTAAAGGAAAGGCAAGAG+AGG - tig0022974:54282-54301 Msa1403680:intron 45.0%
CCCTTGAAGGAGTAATGTGT+TGG - tig0022974:54584-54603 Msa1403680:intron 45.0%
GAAGGAGTAATGTGTTGGAG+TGG - tig0022974:54589-54608 Msa1403680:intron 45.0%
AAGAAGAGGAATCTAGAGGG+GGG + tig0022974:54666-54685 None:intergenic 45.0%
! TGTGTGGTTTGCCTTGGAAT+TGG - tig0022974:54867-54886 Msa1403680:intron 45.0%
CCTTGGAATTGGTTAAGGAC+CGG - tig0022974:54878-54897 Msa1403680:intron 45.0%
ACTTTCCCTATGATCGAGAG+TGG - tig0022974:54945-54964 Msa1403680:intron 45.0%
!! GGCATGACTTGTTTGCTTTG+TGG - tig0022974:55366-55385 Msa1403680:five_prime_UTR 45.0%
ACTTGTTTGCTTTGTGGTGG+AGG - tig0022974:55372-55391 Msa1403680:five_prime_UTR 45.0%
!!! TTAAAAAAAATCATTTTTAA+CGG + tig0022974:52482-52501 None:intergenic 5.0%
!!! AGTATAATTTTATTATTTTT+TGG + tig0022974:54033-54052 None:intergenic 5.0%
!! AAAAATATTGAAATTATATT+CGG - tig0022974:54234-54253 Msa1403680:intron 5.0%
GACAAGACAAGACCGTACAG+TGG + tig0022974:51617-51636 None:intergenic 50.0%
GCAGAAGACGAAGGATGAAG+AGG + tig0022974:51746-51765 None:intergenic 50.0%
!! ATTTTGGCGAGCAGGATCTG+TGG - tig0022974:53299-53318 Msa1403680:intron 50.0%
TCACACAAGAGCCTGTTTCC+AGG + tig0022974:53624-53643 None:intergenic 50.0%
GTAATGTGTTGGAGTGGCAC+TGG - tig0022974:54595-54614 Msa1403680:intron 50.0%
AGAAGAGGAATCTAGAGGGG+GGG + tig0022974:54665-54684 None:intergenic 50.0%
GGGCTTTCTTTGTGCATGTG+TGG - tig0022974:54851-54870 Msa1403680:intron 50.0%
! TGTGCATGTGTGGTTTGCCT+TGG - tig0022974:54861-54880 Msa1403680:intron 50.0%
CCGGTCCTTAACCAATTCCA+AGG + tig0022974:54881-54900 None:intergenic 50.0%
GGAATTGGTTAAGGACCGGT+TGG - tig0022974:54882-54901 Msa1403680:intron 50.0%
! TATGTCGGCTATACTCCCGA+TGG - tig0022974:55075-55094 Msa1403680:CDS 50.0%
!!! ATACTTTTAGGGGGGCGCCT+TGG - tig0022974:53549-53568 Msa1403680:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - tig0022974:53603-53622 Msa1403680:intron 55.0%
CGGGTTCAAGTCCTGGAAAC+AGG - tig0022974:53610-53629 Msa1403680:intron 55.0%
CAAAAGCTCCCGCATACGCA+GGG + tig0022974:53699-53718 None:intergenic 55.0%
ACAAAAGCTCCCGCATACGC+AGG + tig0022974:53700-53719 None:intergenic 55.0%
! ATGCGGGAGCTTTTGTGCAC+CGG - tig0022974:53704-53723 Msa1403680:intron 55.0%
AAGAGGAATCTAGAGGGGGG+GGG + tig0022974:54663-54682 None:intergenic 55.0%
GAAGAGGAATCTAGAGGGGG+GGG + tig0022974:54664-54683 None:intergenic 55.0%
! CAAATGGTGGGACCCCTTCC+CGG - tig0022974:53672-53691 Msa1403680:intron 60.0%
! TGCGGGAGCTTTTGTGCACC+GGG - tig0022974:53705-53724 Msa1403680:intron 60.0%
AGAGGAATCTAGAGGGGGGG+GGG + tig0022974:54662-54681 None:intergenic 60.0%
CGGGAAGGGGTCCCACCATT+TGG + tig0022974:53674-53693 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + tig0022974:53687-53706 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + tig0022974:53688-53707 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - tig0022974:53687-53706 Msa1403680:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - tig0022974:53688-53707 Msa1403680:intron 65.0%
AGGAATCTAGAGGGGGGGGG+GGG + tig0022974:54660-54679 None:intergenic 65.0%
GAGGAATCTAGAGGGGGGGG+GGG + tig0022974:54661-54680 None:intergenic 65.0%
!! AGGGGGGCGCCTTGGCACAA+CGG - tig0022974:53557-53576 Msa1403680:intron 70.0%
CGCATACGCAGGGTCCGGGA+AGG + tig0022974:53689-53708 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + tig0022974:53693-53712 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + tig0022974:53694-53713 None:intergenic 70.0%
GGGGGGGGGGGTAAGGGAAA+GGG + tig0022974:54630-54649 None:intergenic 70.0%
AATCTAGAGGGGGGGGGGGG+GGG + tig0022974:54657-54676 None:intergenic 70.0%
GAATCTAGAGGGGGGGGGGG+GGG + tig0022974:54658-54677 None:intergenic 70.0%
GGAATCTAGAGGGGGGGGGG+GGG + tig0022974:54659-54678 None:intergenic 70.0%
GGGGGGGGGGGGTAAGGGAA+AGG + tig0022974:54631-54650 None:intergenic 75.0%
ATCTAGAGGGGGGGGGGGGG+GGG + tig0022974:54656-54675 None:intergenic 75.0%
! TCTAGAGGGGGGGGGGGGGG+GGG + tig0022974:54655-54674 None:intergenic 80.0%
! GGGGGGGGGGGGGGGGGTAA+GGG + tig0022974:54636-54655 None:intergenic 85.0%
! TAGAGGGGGGGGGGGGGGGG+GGG + tig0022974:54653-54672 None:intergenic 85.0%
! CTAGAGGGGGGGGGGGGGGG+GGG + tig0022974:54654-54673 None:intergenic 85.0%
! GGGGGGGGGGGGGGGGGGTA+AGG + tig0022974:54637-54656 None:intergenic 90.0%
! AGAGGGGGGGGGGGGGGGGG+GGG + tig0022974:54652-54671 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG + tig0022974:54650-54669 None:intergenic 95.0%
! GAGGGGGGGGGGGGGGGGGG+GGG + tig0022974:54651-54670 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
tig0022974 gene 51604 55411 51604 ID=Msa1403680;Name=Msa1403680
tig0022974 mRNA 51604 55411 51604 ID=Msa1403680-mRNA-1;Parent=Msa1403680;Name=Msa1403680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=163|1|1|1|1|1|4|399|104
tig0022974 exon 51604 52093 51604 ID=Msa1403680-mRNA-1:exon:19414;Parent=Msa1403680-mRNA-1
tig0022974 exon 53087 53207 53087 ID=Msa1403680-mRNA-1:exon:19413;Parent=Msa1403680-mRNA-1
tig0022974 exon 55054 55153 55054 ID=Msa1403680-mRNA-1:exon:19412;Parent=Msa1403680-mRNA-1
tig0022974 exon 55246 55411 55246 ID=Msa1403680-mRNA-1:exon:19411;Parent=Msa1403680-mRNA-1
tig0022974 five_prime_UTR 55249 55411 55249 ID=Msa1403680-mRNA-1:five_prime_utr;Parent=Msa1403680-mRNA-1
tig0022974 CDS 55246 55248 55246 ID=Msa1403680-mRNA-1:cds;Parent=Msa1403680-mRNA-1
tig0022974 CDS 55054 55153 55054 ID=Msa1403680-mRNA-1:cds;Parent=Msa1403680-mRNA-1
tig0022974 CDS 53087 53207 53087 ID=Msa1403680-mRNA-1:cds;Parent=Msa1403680-mRNA-1
tig0022974 CDS 52003 52093 52003 ID=Msa1403680-mRNA-1:cds;Parent=Msa1403680-mRNA-1
tig0022974 three_prime_UTR 51604 52002 51604 ID=Msa1403680-mRNA-1:three_prime_utr;Parent=Msa1403680-mRNA-1
Gene Sequence

>Msa1403680

ATGGCTAACAGTGATCGTCACACCATTATTCTAATTCAAACTTCTCACAGTAGAGCTACCAGAACTTTCATGGATTTTCACTCCATCTCTCTTGCTATCGATGGCATATGTGGACTGTATGAAAGGAAACTGAAGGACTTGAATCCAGCCGTCAGAAATATCTCTTATGATATCATGGATCTCTACAACTTCATAGACGGTCTTGCAGACATGAGTGCTCTAGTTTATGATGGTTCAAAGCATGCTTACTTTCCCTATGATCGAGAGTGGATTAAGGAACGAACCTTTCAACATTTGAAGAAATTGGCACGTTGA

Protein sequence

>Msa1403680

MANSDRHTIILIQTSHSRATRTFMDFHSISLAIDGICGLYERKLKDLNPAVRNISYDIMDLYNFIDGLADMSALVYDGSKHAYFPYDREWIKERTFQHLKKLAR*