Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054780 | XP_003588876.1 | 94.231 | 104 | 6 | 0 | 1 | 104 | 1 | 104 | 3.57e-66 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054780 | sp|Q96319|ERH_ARATH | 74.257 | 101 | 26 | 0 | 3 | 103 | 5 | 105 | 1.43e-52 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054780 | G7I895 | 94.231 | 104 | 6 | 0 | 1 | 104 | 1 | 104 | 1.70e-66 | 204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028660 | Msa0054780 | 0.815920 | 7.219019e-52 | -8.615850e-47 |
| Msa0032580 | Msa0054780 | 0.803462 | 3.446257e-49 | -8.615850e-47 |
| Msa0054780 | Msa0073480 | 0.809875 | 1.524476e-50 | -8.615850e-47 |
| Msa0054780 | Msa0076320 | 0.815456 | 9.160993e-52 | -8.615850e-47 |
| Msa0054780 | Msa0115270 | 0.801910 | 7.203276e-49 | -8.615850e-47 |
| Msa0054780 | Msa0121590 | 0.802855 | 4.601661e-49 | -8.615850e-47 |
| Msa0054780 | Msa0145440 | 0.829738 | 4.350518e-55 | -8.615850e-47 |
| Msa0054780 | Msa0160550 | 0.823298 | 1.493389e-53 | -8.615850e-47 |
| Msa0054780 | Msa0172970 | 0.800464 | 1.423984e-48 | -8.615850e-47 |
| Msa0054780 | Msa0189320 | 0.821726 | 3.463209e-53 | -8.615850e-47 |
| Msa0054780 | Msa0191050 | 0.824957 | 6.090820e-54 | -8.615850e-47 |
| Msa0054780 | Msa0194950 | -0.808410 | 3.139733e-50 | -8.615850e-47 |
| Msa0054780 | Msa0197660 | 0.800351 | 1.501510e-48 | -8.615850e-47 |
| Msa0054780 | Msa0233350 | 0.821725 | 3.465533e-53 | -8.615850e-47 |
| Msa0054780 | Msa0234050 | 0.808036 | 3.772261e-50 | -8.615850e-47 |
| Msa0054780 | Msa0239800 | 0.806751 | 7.065601e-50 | -8.615850e-47 |
| Msa0054780 | Msa0241390 | 0.807425 | 5.085961e-50 | -8.615850e-47 |
| Msa0054780 | Msa0260680 | 0.825150 | 5.484354e-54 | -8.615850e-47 |
| Msa0054780 | Msa0267310 | 0.819006 | 1.456833e-52 | -8.615850e-47 |
| Msa0054780 | Msa0267970 | 0.803171 | 3.959634e-49 | -8.615850e-47 |
| Msa0054780 | Msa0280090 | 0.808947 | 2.411256e-50 | -8.615850e-47 |
| Msa0054780 | Msa0309770 | 0.820463 | 6.768485e-53 | -8.615850e-47 |
| Msa0054780 | Msa0315440 | -0.816415 | 5.595184e-52 | -8.615850e-47 |
| Msa0054780 | Msa0334550 | 0.816574 | 5.155612e-52 | -8.615850e-47 |
| Msa0054780 | Msa0352330 | 0.826462 | 2.677361e-54 | -8.615850e-47 |
| Msa0054780 | Msa0372340 | 0.814194 | 1.744199e-51 | -8.615850e-47 |
| Msa0054780 | Msa0376450 | -0.801319 | 9.521858e-49 | -8.615850e-47 |
| Msa0054780 | Msa0380040 | 0.814139 | 1.793343e-51 | -8.615850e-47 |
| Msa0054780 | Msa0383800 | 0.827163 | 1.820842e-54 | -8.615850e-47 |
| Msa0054780 | Msa0399340 | 0.831429 | 1.677908e-55 | -8.615850e-47 |
| Msa0054780 | Msa0419310 | 0.811690 | 6.172072e-51 | -8.615850e-47 |
| Msa0054780 | Msa0429290 | 0.819686 | 1.019472e-52 | -8.615850e-47 |
| Msa0054780 | Msa0442200 | 0.816336 | 5.828658e-52 | -8.615850e-47 |
| Msa0054780 | Msa0471720 | -0.803323 | 3.682202e-49 | -8.615850e-47 |
| Msa0054780 | Msa0475580 | 0.821166 | 4.665254e-53 | -8.615850e-47 |
| Msa0054780 | Msa0477080 | 0.837058 | 6.503088e-57 | -8.615850e-47 |
| Msa0054780 | Msa0493630 | 0.804885 | 1.742641e-49 | -8.615850e-47 |
| Msa0054780 | Msa0504450 | 0.803390 | 3.566620e-49 | -8.615850e-47 |
| Msa0054780 | Msa0510350 | 0.831763 | 1.388160e-55 | -8.615850e-47 |
| Msa0054780 | Msa0519220 | 0.816716 | 4.790523e-52 | -8.615850e-47 |
| Msa0054780 | Msa0541360 | 0.816631 | 5.006779e-52 | -8.615850e-47 |
| Msa0054780 | Msa0578040 | 0.830767 | 2.439674e-55 | -8.615850e-47 |
| Msa0054780 | Msa0596800 | 0.838608 | 2.599120e-57 | -8.615850e-47 |
| Msa0054780 | Msa0607050 | 0.816035 | 6.803479e-52 | -8.615850e-47 |
| Msa0054780 | Msa0608710 | 0.811928 | 5.477940e-51 | -8.615850e-47 |
| Msa0054780 | Msa0610430 | 0.803470 | 3.432839e-49 | -8.615850e-47 |
| Msa0054780 | Msa0621490 | 0.802011 | 6.868748e-49 | -8.615850e-47 |
| Msa0054780 | Msa0623790 | 0.823437 | 1.385581e-53 | -8.615850e-47 |
| Msa0054780 | Msa0632870 | 0.808960 | 2.395608e-50 | -8.615850e-47 |
| Msa0054780 | Msa0643560 | 0.824581 | 7.468900e-54 | -8.615850e-47 |
| Msa0054780 | Msa0647500 | 0.833420 | 5.387011e-56 | -8.615850e-47 |
| Msa0054780 | Msa0661190 | -0.814492 | 1.498777e-51 | -8.615850e-47 |
| Msa0054780 | Msa0666270 | 0.806651 | 7.418245e-50 | -8.615850e-47 |
| Msa0054780 | Msa0688960 | 0.803588 | 3.244990e-49 | -8.615850e-47 |
| Msa0054780 | Msa0690150 | 0.810435 | 1.154632e-50 | -8.615850e-47 |
| Msa0054780 | Msa0692830 | 0.804783 | 1.829936e-49 | -8.615850e-47 |
| Msa0054780 | Msa0692950 | 0.806201 | 9.227661e-50 | -8.615850e-47 |
| Msa0054780 | Msa0696450 | 0.824003 | 1.021523e-53 | -8.615850e-47 |
| Msa0054780 | Msa0737600 | 0.805701 | 1.175573e-49 | -8.615850e-47 |
| Msa0054780 | Msa0794670 | 0.800679 | 1.286921e-48 | -8.615850e-47 |
| Msa0054780 | Msa0869120 | 0.802316 | 5.944846e-49 | -8.615850e-47 |
| Msa0054780 | Msa0927260 | 0.810595 | 1.066243e-50 | -8.615850e-47 |
| Msa0054780 | Msa0942070 | 0.802901 | 4.501717e-49 | -8.615850e-47 |
| Msa0054780 | Msa0944190 | 0.806060 | 9.879313e-50 | -8.615850e-47 |
| Msa0054780 | Msa0967650 | -0.802818 | 4.683294e-49 | -8.615850e-47 |
| Msa0054780 | Msa0971020 | 0.807254 | 5.530352e-50 | -8.615850e-47 |
| Msa0054780 | Msa1012830 | 0.810904 | 9.141725e-51 | -8.615850e-47 |
| Msa0054780 | Msa1037420 | 0.829721 | 4.392207e-55 | -8.615850e-47 |
| Msa0054780 | Msa1043050 | 0.801256 | 9.808719e-49 | -8.615850e-47 |
| Msa0054780 | Msa1046020 | 0.831157 | 1.956933e-55 | -8.615850e-47 |
| Msa0054780 | Msa1046060 | 0.824899 | 6.285626e-54 | -8.615850e-47 |
| Msa0054780 | Msa1091100 | 0.806289 | 8.841772e-50 | -8.615850e-47 |
| Msa0054780 | Msa1123810 | 0.828548 | 8.458566e-55 | -8.615850e-47 |
| Msa0054780 | Msa1134090 | 0.805219 | 1.483858e-49 | -8.615850e-47 |
| Msa0054780 | Msa1150710 | 0.807726 | 4.390266e-50 | -8.615850e-47 |
| Msa0054780 | Msa1173140 | 0.800229 | 1.589770e-48 | -8.615850e-47 |
| Msa0054780 | Msa1182880 | 0.805902 | 1.066848e-49 | -8.615850e-47 |
| Msa0054780 | Msa1204530 | 0.801652 | 8.139214e-49 | -8.615850e-47 |
| Msa0054780 | Msa1228520 | 0.801611 | 8.297095e-49 | -8.615850e-47 |
| Msa0054780 | Msa1260130 | 0.807099 | 5.963621e-50 | -8.615850e-47 |
| Msa0054780 | Msa1275360 | 0.802829 | 4.659495e-49 | -8.615850e-47 |
| Msa0054780 | Msa1304820 | 0.821704 | 3.505270e-53 | -8.615850e-47 |
| Msa0054780 | Msa1359600 | 0.898688 | 4.150582e-77 | -8.615850e-47 |
| Msa0054780 | Msa1375380 | 0.806767 | 7.011781e-50 | -8.615850e-47 |
| Msa0054780 | Msa1385770 | 0.847030 | 1.496224e-59 | -8.615850e-47 |
| Msa0054780 | Msa1403680 | 0.930246 | 2.164664e-93 | -8.615850e-47 |
| Msa0054780 | Msa1409240 | 0.846878 | 1.647092e-59 | -8.615850e-47 |
| Msa0054780 | Msa1426030 | 0.809158 | 2.172436e-50 | -8.615850e-47 |
| Msa0054780 | Msa1432420 | 0.813829 | 2.099291e-51 | -8.615850e-47 |
| Msa0054780 | Msa1434140 | 0.847710 | 9.732981e-60 | -8.615850e-47 |
| Msa0054780 | Msa1444740 | 0.802515 | 5.409738e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054780 | MtrunA17_Chr1g0150021 | 94.231 | 104 | 6 | 0 | 1 | 104 | 1 | 104 | 3.28e-70 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054780 | AT5G10810.1 | 74.257 | 101 | 26 | 0 | 3 | 103 | 5 | 105 | 1.46e-53 | 163 |
Find 46 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTTAATTGCTAAAATTT+TGG | 0.074131 | 1_2:-9486743 | None:intergenic |
| CTTTCAACATTTGAAGAAAT+TGG | 0.132075 | 1_2:+9486705 | Msa0054780:CDS |
| TATCCTTGTCAAGTGTTCTA+TGG | 0.259897 | 1_2:+9486943 | Msa0054780:three_prime_UTR |
| CCTAACATCTATAATTAAAA+AGG | 0.326247 | 1_2:+9487042 | Msa0054780:three_prime_UTR |
| TAGAGCTACCAGAACTTTCA+TGG | 0.334223 | 1_2:+9484949 | Msa0054780:CDS |
| CTTAATCCACTCTCGATCAT+AGG | 0.344190 | 1_2:-9486674 | None:intergenic |
| TTCTTTACTTGCAGTTATGA+TGG | 0.351370 | 1_2:+9486631 | Msa0054780:intron |
| GTGAAAATCCATGAAAGTTC+TGG | 0.356886 | 1_2:-9484957 | None:intergenic |
| TTTCTGAAACAAATGACTAT+TGG | 0.358570 | 1_2:+9486901 | Msa0054780:three_prime_UTR |
| GATGAAGAGGAAGAAGAAAA+TGG | 0.362190 | 1_2:-9484770 | None:intergenic |
| GGCATGACTTGTTTGCTTTG+TGG | 0.363561 | 1_2:+9487089 | Msa0054780:three_prime_UTR |
| CTATGATCGAGAGTGGATTA+AGG | 0.376363 | 1_2:+9486675 | Msa0054780:CDS |
| TCATCCTTCTTCTTCTGCTA+TGG | 0.394112 | 1_2:+9484788 | Msa0054780:exon |
| AGAAGTTTGAATTAGAATAA+TGG | 0.430839 | 1_2:-9484921 | None:intergenic |
| CAGCTAAATAGTACAAGATA+AGG | 0.431445 | 1_2:-9486994 | None:intergenic |
| TAAGAGATATTTCTGACGGC+TGG | 0.446674 | 1_2:-9485603 | None:intergenic |
| ACTTGTTTGCTTTGTGGTGG+AGG | 0.452228 | 1_2:+9487095 | Msa0054780:three_prime_UTR |
| AAATATCTCTTATGATATCA+TGG | 0.475878 | 1_2:+9485614 | Msa0054780:CDS |
| CAATTTCTTCAAATGTTGAA+AGG | 0.494842 | 1_2:-9486704 | None:intergenic |
| TTAATCCACTCTCGATCATA+GGG | 0.515090 | 1_2:-9486673 | None:intergenic |
| TTAATTATAGATGTTAGGAT+AGG | 0.522801 | 1_2:-9487037 | None:intergenic |
| GAAGAACTTGTCTGTTATGT+CGG | 0.539343 | 1_2:+9486783 | Msa0054780:three_prime_UTR |
| TAACAGACAAGTTCTTCCCT+TGG | 0.551586 | 1_2:-9486777 | None:intergenic |
| AGGTGAGTTGATTATAGTTG+AGG | 0.553886 | 1_2:+9487115 | Msa0054780:three_prime_UTR |
| ATGACTATTGGCAATTAGCA+TGG | 0.553974 | 1_2:+9486913 | Msa0054780:three_prime_UTR |
| TCCATCTCTCTTGCTATCGA+TGG | 0.553990 | 1_2:+9484980 | Msa0054780:CDS |
| ATGACTTGTTTGCTTTGTGG+TGG | 0.563337 | 1_2:+9487092 | Msa0054780:three_prime_UTR |
| GCATATGTGGACTGTATGAA+AGG | 0.565109 | 1_2:+9485562 | Msa0054780:CDS |
| TATCAAGCAACATAGCCATC+GGG | 0.569162 | 1_2:-9486813 | None:intergenic |
| CTTACCATAGCAGAAGAAGA+AGG | 0.570397 | 1_2:-9484792 | None:intergenic |
| ATATCAAGCAACATAGCCAT+CGG | 0.572845 | 1_2:-9486814 | None:intergenic |
| AGATAAGGATTTGTTTAACA+AGG | 0.574289 | 1_2:-9486979 | None:intergenic |
| ATCATAAGAGATATTTCTGA+CGG | 0.580337 | 1_2:-9485607 | None:intergenic |
| AAGTCGAAATTACCACTGTA+CGG | 0.584562 | 1_2:+9484642 | None:intergenic |
| GCAGAAGAAGAAGGATGAAG+AGG | 0.586126 | 1_2:-9484783 | None:intergenic |
| ACTTTCCCTATGATCGAGAG+TGG | 0.592959 | 1_2:+9486668 | Msa0054780:CDS |
| GATCTCTACAACTTCATAGA+CGG | 0.620195 | 1_2:+9485636 | Msa0054780:CDS |
| ACCATCGATAGCAAGAGAGA+TGG | 0.627765 | 1_2:-9484981 | None:intergenic |
| AATGTAAAGAAAATCACCAA+GGG | 0.632124 | 1_2:+9486761 | Msa0054780:three_prime_UTR |
| ACTGTATGAAAGGAAACTGA+AGG | 0.645635 | 1_2:+9485572 | Msa0054780:CDS |
| ACACTCGAATAAACAAGACT+CGG | 0.656856 | 1_2:-9484676 | None:intergenic |
| TAGCCATAGAACACTTGACA+AGG | 0.680657 | 1_2:-9486946 | None:intergenic |
| TATGTCGGCTATACTCCCGA+TGG | 0.682811 | 1_2:+9486798 | Msa0054780:three_prime_UTR |
| AAATGTAAAGAAAATCACCA+AGG | 0.692225 | 1_2:+9486760 | Msa0054780:three_prime_UTR |
| TCGAGTGTGTGTAATGAGTG+CGG | 0.718439 | 1_2:+9484691 | Msa0054780:five_prime_UTR |
| GACAAGACAAGACCGTACAG+TGG | 0.735850 | 1_2:-9484654 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATACGAAAAAATAATAA+AGG | - | chr1_2:9485272-9485291 | None:intergenic | 10.0% |
| !! | AAACAAAAGAAAAAAATAAA+TGG | + | chr1_2:9486013-9486032 | Msa0054780:intron | 10.0% |
| !! | ATTCTTTCAAATTTCAAATT+AGG | + | chr1_2:9484836-9484855 | Msa0054780:intron | 15.0% |
| !! | AAGAAAAAAATAAATGGTAA+AGG | + | chr1_2:9486019-9486038 | Msa0054780:intron | 15.0% |
| !!! | ATTTAATTGCTAAAATTTTG+GGG | - | chr1_2:9486744-9486763 | None:intergenic | 15.0% |
| !!! | CATTTAATTGCTAAAATTTT+GGG | - | chr1_2:9486745-9486764 | None:intergenic | 15.0% |
| !!! | ACATTTAATTGCTAAAATTT+TGG | - | chr1_2:9486746-9486765 | None:intergenic | 15.0% |
| !! | TAATTAATTGCTTTAATCAC+AGG | + | chr1_2:9484880-9484899 | Msa0054780:intron | 20.0% |
| !! | AGAAGTTTGAATTAGAATAA+TGG | - | chr1_2:9484924-9484943 | None:intergenic | 20.0% |
| !!! | TTATTTTCTAGGTTGTTAAT+AGG | + | chr1_2:9485185-9485204 | Msa0054780:intron | 20.0% |
| !!! | TATTTTCTAGGTTGTTAATA+GGG | + | chr1_2:9485186-9485205 | Msa0054780:intron | 20.0% |
| !!! | TATTCTTTGTTGATACTTTT+AGG | + | chr1_2:9485291-9485310 | Msa0054780:intron | 20.0% |
| !!! | ATTCTTTGTTGATACTTTTA+GGG | + | chr1_2:9485292-9485311 | Msa0054780:intron | 20.0% |
| !! | AAGTATCAACAAAGAATAAA+GGG | - | chr1_2:9485488-9485507 | None:intergenic | 20.0% |
| !!! | AAAGTATCAACAAAGAATAA+AGG | - | chr1_2:9485489-9485508 | None:intergenic | 20.0% |
| !!! | TTTTAATCATGTGTTTTTAC+AGG | + | chr1_2:9485540-9485559 | Msa0054780:intron | 20.0% |
| !! | AAATATCTCTTATGATATCA+TGG | + | chr1_2:9485614-9485633 | Msa0054780:CDS | 20.0% |
| !! | AAAAATAAATGGTAAAGGAA+AGG | + | chr1_2:9486024-9486043 | Msa0054780:intron | 20.0% |
| !! | AATAACTTATTCTTGAATCA+TGG | - | chr1_2:9486081-9486100 | None:intergenic | 20.0% |
| !!! | CTTAATTTTCATTTGATTCA+TGG | - | chr1_2:9486264-9486283 | None:intergenic | 20.0% |
| !! | TCAAATGAAAATTAAGAGTA+TGG | + | chr1_2:9486268-9486287 | Msa0054780:intron | 20.0% |
| !!! | CAAATGAAAATTAAGAGTAT+GGG | + | chr1_2:9486269-9486288 | Msa0054780:intron | 20.0% |
| !!! | TGATTGCTCTTTTATATATT+GGG | + | chr1_2:9486554-9486573 | Msa0054780:intron | 20.0% |
| !! | TTAATTATAGATGTTAGGAT+AGG | - | chr1_2:9487040-9487059 | None:intergenic | 20.0% |
| !!! | CCTTTTTAATTATAGATGTT+AGG | - | chr1_2:9487045-9487064 | None:intergenic | 20.0% |
| !! | CCTAACATCTATAATTAAAA+AGG | + | chr1_2:9487042-9487061 | Msa0054780:three_prime_UTR | 20.0% |
| !! | CTTGTTAGTATAGTTTTTGT+TGG | - | chr1_2:9484733-9484752 | None:intergenic | 25.0% |
| !! | ACATCTGGAAATTATTTTCT+AGG | + | chr1_2:9485174-9485193 | Msa0054780:intron | 25.0% |
| !! | ATTTTCTAGGTTGTTAATAG+GGG | + | chr1_2:9485187-9485206 | Msa0054780:intron | 25.0% |
| ! | ATAATAAAGGATGTAAATCC+CGG | - | chr1_2:9485259-9485278 | None:intergenic | 25.0% |
| !! | TTCTTTGTTGATACTTTTAG+GGG | + | chr1_2:9485293-9485312 | Msa0054780:intron | 25.0% |
| ! | TCATTATCAGCATTAAATAG+AGG | + | chr1_2:9485517-9485536 | Msa0054780:intron | 25.0% |
| !! | ATCATAAGAGATATTTCTGA+CGG | - | chr1_2:9485610-9485629 | None:intergenic | 25.0% |
| !! | TTTTTCATTAAGTAGTTGCT+TGG | + | chr1_2:9485907-9485926 | Msa0054780:intron | 25.0% |
| !! | TTTTAAACAGAACAGACTAA+CGG | - | chr1_2:9486160-9486179 | None:intergenic | 25.0% |
| !! | CTGTTTAAAACACTACAATT+TGG | + | chr1_2:9486170-9486189 | Msa0054780:intron | 25.0% |
| !!! | TCCTAATATTTTTGTCAAGA+GGG | - | chr1_2:9486486-9486505 | None:intergenic | 25.0% |
| !!! | TTCCTAATATTTTTGTCAAG+AGG | - | chr1_2:9486487-9486506 | None:intergenic | 25.0% |
| ! | TACATAAGACAGTTGAATAA+AGG | - | chr1_2:9486532-9486551 | None:intergenic | 25.0% |
| !! | GTGATTGCTCTTTTATATAT+TGG | + | chr1_2:9486553-9486572 | Msa0054780:intron | 25.0% |
| ! | CAATTTCTTCAAATGTTGAA+AGG | - | chr1_2:9486707-9486726 | None:intergenic | 25.0% |
| ! | CTTTCAACATTTGAAGAAAT+TGG | + | chr1_2:9486705-9486724 | Msa0054780:CDS | 25.0% |
| ! | AAATGTAAAGAAAATCACCA+AGG | + | chr1_2:9486760-9486779 | Msa0054780:three_prime_UTR | 25.0% |
| ! | AATGTAAAGAAAATCACCAA+GGG | + | chr1_2:9486761-9486780 | Msa0054780:three_prime_UTR | 25.0% |
| !!! | TTTCTGAAACAAATGACTAT+TGG | + | chr1_2:9486901-9486920 | Msa0054780:three_prime_UTR | 25.0% |
| !! | AGATAAGGATTTGTTTAACA+AGG | - | chr1_2:9486982-9487001 | None:intergenic | 25.0% |
| !!! | TTGTTGGTTTTTCACGTTTA+TGG | - | chr1_2:9484717-9484736 | None:intergenic | 30.0% |
| AATGATGAAAGTGAAGTGAT+AGG | - | chr1_2:9485038-9485057 | None:intergenic | 30.0% | |
| TCACTTCACTTTCATCATTT+AGG | + | chr1_2:9485039-9485058 | Msa0054780:intron | 30.0% | |
| GAACATACTGTTTCAATATG+TGG | + | chr1_2:9485110-9485129 | Msa0054780:intron | 30.0% | |
| ! | TCTTTGTTGATACTTTTAGG+GGG | + | chr1_2:9485294-9485313 | Msa0054780:intron | 30.0% |
| ATTGTTTCAATGTGACTGAA+AGG | + | chr1_2:9485338-9485357 | Msa0054780:intron | 30.0% | |
| ! | TCTCAAAATTTTGCATGCAT+AGG | + | chr1_2:9485696-9485715 | Msa0054780:intron | 30.0% |
| TTGATGTTAGAGAAAAAGTG+AGG | + | chr1_2:9485828-9485847 | Msa0054780:intron | 30.0% | |
| TGGTCATATCTTGTTGAATT+TGG | + | chr1_2:9485927-9485946 | Msa0054780:intron | 30.0% | |
| AAACACTACAATTTGGATCA+AGG | + | chr1_2:9486177-9486196 | Msa0054780:intron | 30.0% | |
| ACCCTCTTGACAAAAATATT+AGG | + | chr1_2:9486482-9486501 | Msa0054780:intron | 30.0% | |
| TAGGAAAATGAAGTGAACTT+AGG | + | chr1_2:9486501-9486520 | Msa0054780:intron | 30.0% | |
| TTCTTTACTTGCAGTTATGA+TGG | + | chr1_2:9486631-9486650 | Msa0054780:intron | 30.0% | |
| CAGCTAAATAGTACAAGATA+AGG | - | chr1_2:9486997-9487016 | None:intergenic | 30.0% | |
| ! | TGCAAATGCATTTTCTTATC+TGG | + | chr1_2:9487068-9487087 | Msa0054780:three_prime_UTR | 30.0% |
| ACACTCGAATAAACAAGACT+CGG | - | chr1_2:9484679-9484698 | None:intergenic | 35.0% | |
| GATGAAGAGGAAGAAGAAAA+TGG | - | chr1_2:9484773-9484792 | None:intergenic | 35.0% | |
| GTGAAAATCCATGAAAGTTC+TGG | - | chr1_2:9484960-9484979 | None:intergenic | 35.0% | |
| TCATTGCTTCACAGTGATAT+AGG | + | chr1_2:9485146-9485165 | Msa0054780:intron | 35.0% | |
| GTGATATAGGACAATACATC+TGG | + | chr1_2:9485159-9485178 | Msa0054780:intron | 35.0% | |
| !! | CTTTGTTGATACTTTTAGGG+GGG | + | chr1_2:9485295-9485314 | Msa0054780:intron | 35.0% |
| TCTTGTGTGAAAACAAGGTA+AGG | + | chr1_2:9485388-9485407 | Msa0054780:intron | 35.0% | |
| GTTGCATACAATACACCAAA+TGG | + | chr1_2:9485410-9485429 | Msa0054780:intron | 35.0% | |
| CATACAATACACCAAATGGT+GGG | + | chr1_2:9485414-9485433 | Msa0054780:intron | 35.0% | |
| !! | TGTGTTTTTACAGGCATATG+TGG | + | chr1_2:9485549-9485568 | Msa0054780:intron | 35.0% |
| ACTGTATGAAAGGAAACTGA+AGG | + | chr1_2:9485572-9485591 | Msa0054780:CDS | 35.0% | |
| GATCTCTACAACTTCATAGA+CGG | + | chr1_2:9485636-9485655 | Msa0054780:CDS | 35.0% | |
| ! | ATTTTATGCTGAGCTAGAAC+TGG | + | chr1_2:9486133-9486152 | Msa0054780:intron | 35.0% |
| AGCAATTGTGAGTTTGAAAG+AGG | + | chr1_2:9486305-9486324 | Msa0054780:intron | 35.0% | |
| AAAGAAGAGGAATCTAGAGA+GGG | - | chr1_2:9486397-9486416 | None:intergenic | 35.0% | |
| TAAAGAAGAGGAATCTAGAG+AGG | - | chr1_2:9486398-9486417 | None:intergenic | 35.0% | |
| TTCATTATGTCCTTAACTCC+AGG | - | chr1_2:9486421-9486440 | None:intergenic | 35.0% | |
| TTAATCCACTCTCGATCATA+GGG | - | chr1_2:9486676-9486695 | None:intergenic | 35.0% | |
| GAAGAACTTGTCTGTTATGT+CGG | + | chr1_2:9486783-9486802 | Msa0054780:three_prime_UTR | 35.0% | |
| ATATCAAGCAACATAGCCAT+CGG | - | chr1_2:9486817-9486836 | None:intergenic | 35.0% | |
| ATGACTATTGGCAATTAGCA+TGG | + | chr1_2:9486913-9486932 | Msa0054780:three_prime_UTR | 35.0% | |
| TATCCTTGTCAAGTGTTCTA+TGG | + | chr1_2:9486943-9486962 | Msa0054780:three_prime_UTR | 35.0% | |
| TCATCCTTCTTCTTCTGCTA+TGG | + | chr1_2:9484788-9484807 | Msa0054780:exon | 40.0% | |
| CTTACCATAGCAGAAGAAGA+AGG | - | chr1_2:9484795-9484814 | None:intergenic | 40.0% | |
| TAGAGCTACCAGAACTTTCA+TGG | + | chr1_2:9484949-9484968 | Msa0054780:CDS | 40.0% | |
| ! | ACAATTTTACCGTTGTGCCA+AGG | - | chr1_2:9485323-9485342 | None:intergenic | 40.0% |
| TCAATGTGACTGAAAGGTCA+CGG | + | chr1_2:9485344-9485363 | Msa0054780:intron | 40.0% | |
| GCATACAATACACCAAATGG+TGG | + | chr1_2:9485413-9485432 | Msa0054780:intron | 40.0% | |
| ! | GCATATGTGGACTGTATGAA+AGG | + | chr1_2:9485562-9485581 | Msa0054780:CDS | 40.0% |
| ! | TAAGAGATATTTCTGACGGC+TGG | - | chr1_2:9485606-9485625 | None:intergenic | 40.0% |
| AAACTTAACTGCCTCTCTGT+TGG | + | chr1_2:9486207-9486226 | Msa0054780:intron | 40.0% | |
| !! | CATTAGCTTTACCAACAGAG+AGG | - | chr1_2:9486221-9486240 | None:intergenic | 40.0% |
| ! | AAGAGTATGGGTGAGAACAT+TGG | + | chr1_2:9486281-9486300 | Msa0054780:intron | 40.0% |
| AAGAGGTCTTAAACCCTTGA+AGG | + | chr1_2:9486322-9486341 | Msa0054780:intron | 40.0% | |
| CCAACACATTACTCCTTCAA+GGG | - | chr1_2:9486338-9486357 | None:intergenic | 40.0% | |
| TCCAACACATTACTCCTTCA+AGG | - | chr1_2:9486339-9486358 | None:intergenic | 40.0% | |
| AAGAAGAGGAATCTAGAGAG+GGG | - | chr1_2:9486396-9486415 | None:intergenic | 40.0% | |
| CTAGATTCCTCTTCTTTACC+TGG | + | chr1_2:9486400-9486419 | Msa0054780:intron | 40.0% | |
| CTTAACTCCAGGTAAAGAAG+AGG | - | chr1_2:9486410-9486429 | None:intergenic | 40.0% | |
| CTCTTCTTTACCTGGAGTTA+AGG | + | chr1_2:9486408-9486427 | Msa0054780:intron | 40.0% | |
| TTTGTCAAGAGGGTTACAAC+AGG | - | chr1_2:9486476-9486495 | None:intergenic | 40.0% | |
| GTTTGCCTTGGAATTGGTTA+AGG | + | chr1_2:9486596-9486615 | Msa0054780:intron | 40.0% | |
| GCAAGTAAAGAACAACCAAC+CGG | - | chr1_2:9486623-9486642 | None:intergenic | 40.0% | |
| CTTAATCCACTCTCGATCAT+AGG | - | chr1_2:9486677-9486696 | None:intergenic | 40.0% | |
| !! | CTATGATCGAGAGTGGATTA+AGG | + | chr1_2:9486675-9486694 | Msa0054780:CDS | 40.0% |
| TAACAGACAAGTTCTTCCCT+TGG | - | chr1_2:9486780-9486799 | None:intergenic | 40.0% | |
| TATCAAGCAACATAGCCATC+GGG | - | chr1_2:9486816-9486835 | None:intergenic | 40.0% | |
| TAGCCATAGAACACTTGACA+AGG | - | chr1_2:9486949-9486968 | None:intergenic | 40.0% | |
| !! | ATGACTTGTTTGCTTTGTGG+TGG | + | chr1_2:9487092-9487111 | Msa0054780:three_prime_UTR | 40.0% |
| TCGAGTGTGTGTAATGAGTG+CGG | + | chr1_2:9484691-9484710 | Msa0054780:five_prime_UTR | 45.0% | |
| GCAGAAGAAGAAGGATGAAG+AGG | - | chr1_2:9484786-9484805 | None:intergenic | 45.0% | |
| ! | TCCATCTCTCTTGCTATCGA+TGG | + | chr1_2:9484980-9484999 | Msa0054780:CDS | 45.0% |
| ACCATCGATAGCAAGAGAGA+TGG | - | chr1_2:9484984-9485003 | None:intergenic | 45.0% | |
| CGTATTGTTGAGCACAATGG+CGG | - | chr1_2:9485227-9485246 | None:intergenic | 45.0% | |
| GCACGTATTGTTGAGCACAA+TGG | - | chr1_2:9485230-9485249 | None:intergenic | 45.0% | |
| CAACAATACGTGCCTCTATC+CGG | + | chr1_2:9485237-9485256 | Msa0054780:intron | 45.0% | |
| AACAATACGTGCCTCTATCC+GGG | + | chr1_2:9485238-9485257 | Msa0054780:intron | 45.0% | |
| AGGATGTAAATCCCGGATAG+AGG | - | chr1_2:9485252-9485271 | None:intergenic | 45.0% | |
| CAATGTGACTGAAAGGTCAC+GGG | + | chr1_2:9485345-9485364 | Msa0054780:intron | 45.0% | |
| CAGGCTCTTGTGTGAAAACA+AGG | + | chr1_2:9485383-9485402 | Msa0054780:intron | 45.0% | |
| ACAAAGAATAAAGGGCAGCC+CGG | - | chr1_2:9485480-9485499 | None:intergenic | 45.0% | |
| GAGAAAAAGTGAGGTGAGAG+AGG | + | chr1_2:9485837-9485856 | Msa0054780:intron | 45.0% | |
| ! | CTGATGCTTCGAGCTTTTCA+TGG | + | chr1_2:9485865-9485884 | Msa0054780:intron | 45.0% |
| TGGTAAAGGAAAGGCAAGAG+AGG | + | chr1_2:9486033-9486052 | Msa0054780:intron | 45.0% | |
| CCCTTGAAGGAGTAATGTGT+TGG | + | chr1_2:9486335-9486354 | Msa0054780:intron | 45.0% | |
| GAAGGAGTAATGTGTTGGAG+TGG | + | chr1_2:9486340-9486359 | Msa0054780:intron | 45.0% | |
| AGAAGAGGAATCTAGAGAGG+GGG | - | chr1_2:9486395-9486414 | None:intergenic | 45.0% | |
| ! | TGTGTGGTTTGCCTTGGAAT+TGG | + | chr1_2:9486590-9486609 | Msa0054780:intron | 45.0% |
| CCTTGGAATTGGTTAAGGAC+CGG | + | chr1_2:9486601-9486620 | Msa0054780:intron | 45.0% | |
| ACTTTCCCTATGATCGAGAG+TGG | + | chr1_2:9486668-9486687 | Msa0054780:CDS | 45.0% | |
| !! | GGCATGACTTGTTTGCTTTG+TGG | + | chr1_2:9487089-9487108 | Msa0054780:three_prime_UTR | 45.0% |
| ACTTGTTTGCTTTGTGGTGG+AGG | + | chr1_2:9487095-9487114 | Msa0054780:three_prime_UTR | 45.0% | |
| !!! | AGTATAATTTTATTATTTTT+TGG | - | chr1_2:9485787-9485806 | None:intergenic | 5.0% |
| !! | AAAAATATTGAAATTATATT+CGG | + | chr1_2:9485987-9486006 | Msa0054780:intron | 5.0% |
| GACAAGACAAGACCGTACAG+TGG | - | chr1_2:9484657-9484676 | None:intergenic | 50.0% | |
| TCACACAAGAGCCTGTTTCC+AGG | - | chr1_2:9485378-9485397 | None:intergenic | 50.0% | |
| GTAATGTGTTGGAGTGGCAC+TGG | + | chr1_2:9486346-9486365 | Msa0054780:intron | 50.0% | |
| AATCTAGAGAGGGGGGGTAA+GGG | - | chr1_2:9486387-9486406 | None:intergenic | 50.0% | |
| AAGAGGAATCTAGAGAGGGG+GGG | - | chr1_2:9486393-9486412 | None:intergenic | 50.0% | |
| GAAGAGGAATCTAGAGAGGG+GGG | - | chr1_2:9486394-9486413 | None:intergenic | 50.0% | |
| GGGCTTTCTTTGTGCATGTG+TGG | + | chr1_2:9486574-9486593 | Msa0054780:intron | 50.0% | |
| ! | TGTGCATGTGTGGTTTGCCT+TGG | + | chr1_2:9486584-9486603 | Msa0054780:intron | 50.0% |
| CCGGTCCTTAACCAATTCCA+AGG | - | chr1_2:9486604-9486623 | None:intergenic | 50.0% | |
| GGAATTGGTTAAGGACCGGT+TGG | + | chr1_2:9486605-9486624 | Msa0054780:intron | 50.0% | |
| ! | TATGTCGGCTATACTCCCGA+TGG | + | chr1_2:9486798-9486817 | Msa0054780:three_prime_UTR | 50.0% |
| !!! | ATACTTTTAGGGGGGCGCCT+TGG | + | chr1_2:9485303-9485322 | Msa0054780:intron | 55.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr1_2:9485357-9485376 | Msa0054780:intron | 55.0% | |
| CGGGTTCAAGTCCTGGAAAC+AGG | + | chr1_2:9485364-9485383 | Msa0054780:intron | 55.0% | |
| CAAAAGCTCCCGCATACGCA+GGG | - | chr1_2:9485453-9485472 | None:intergenic | 55.0% | |
| ACAAAAGCTCCCGCATACGC+AGG | - | chr1_2:9485454-9485473 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTTGTGCAC+CGG | + | chr1_2:9485458-9485477 | Msa0054780:intron | 55.0% |
| GAATCTAGAGAGGGGGGGTA+AGG | - | chr1_2:9486388-9486407 | None:intergenic | 55.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr1_2:9485426-9485445 | Msa0054780:intron | 60.0% |
| ! | TGCGGGAGCTTTTGTGCACC+GGG | + | chr1_2:9485459-9485478 | Msa0054780:intron | 60.0% |
| GAGAGGGGGGGTAAGGGAAA+GGG | - | chr1_2:9486381-9486400 | None:intergenic | 60.0% | |
| AGAGAGGGGGGGTAAGGGAA+AGG | - | chr1_2:9486382-9486401 | None:intergenic | 60.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr1_2:9485428-9485447 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr1_2:9485441-9485460 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr1_2:9485442-9485461 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr1_2:9485441-9485460 | Msa0054780:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr1_2:9485442-9485461 | Msa0054780:intron | 65.0% | |
| !! | AGGGGGGCGCCTTGGCACAA+CGG | + | chr1_2:9485311-9485330 | Msa0054780:intron | 70.0% |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr1_2:9485443-9485462 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr1_2:9485447-9485466 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr1_2:9485448-9485467 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 9484644 | 9487134 | 9484644 | ID=Msa0054780;Name=Msa0054780 |
| chr1_2 | mRNA | 9484644 | 9487134 | 9484644 | ID=Msa0054780-mRNA-1;Parent=Msa0054780;Name=Msa0054780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=163|1|1|1|1|1|4|399|104 |
| chr1_2 | exon | 9484644 | 9484809 | 9484644 | ID=Msa0054780-mRNA-1:exon:3517;Parent=Msa0054780-mRNA-1 |
| chr1_2 | exon | 9484902 | 9485001 | 9484902 | ID=Msa0054780-mRNA-1:exon:3518;Parent=Msa0054780-mRNA-1 |
| chr1_2 | exon | 9485562 | 9485682 | 9485562 | ID=Msa0054780-mRNA-1:exon:3519;Parent=Msa0054780-mRNA-1 |
| chr1_2 | exon | 9486645 | 9487134 | 9486645 | ID=Msa0054780-mRNA-1:exon:3520;Parent=Msa0054780-mRNA-1 |
| chr1_2 | five_prime_UTR | 9484644 | 9484806 | 9484644 | ID=Msa0054780-mRNA-1:five_prime_utr;Parent=Msa0054780-mRNA-1 |
| chr1_2 | CDS | 9484807 | 9484809 | 9484807 | ID=Msa0054780-mRNA-1:cds;Parent=Msa0054780-mRNA-1 |
| chr1_2 | CDS | 9484902 | 9485001 | 9484902 | ID=Msa0054780-mRNA-1:cds;Parent=Msa0054780-mRNA-1 |
| chr1_2 | CDS | 9485562 | 9485682 | 9485562 | ID=Msa0054780-mRNA-1:cds;Parent=Msa0054780-mRNA-1 |
| chr1_2 | CDS | 9486645 | 9486735 | 9486645 | ID=Msa0054780-mRNA-1:cds;Parent=Msa0054780-mRNA-1 |
| chr1_2 | three_prime_UTR | 9486736 | 9487134 | 9486736 | ID=Msa0054780-mRNA-1:three_prime_utr;Parent=Msa0054780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
