Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359750 | XP_013460852.1 | 72.973 | 185 | 27 | 2 | 1 | 185 | 1 | 162 | 2.24e-85 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359750 | sp|Q9LX15|DFC_ARATH | 32.000 | 175 | 95 | 3 | 3 | 177 | 4 | 154 | 1.74e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359750 | B7FN25 | 72.973 | 185 | 27 | 2 | 1 | 185 | 1 | 162 | 1.07e-85 | 258 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1359750 | Msa1422720 | 0.932857 | 4.532824e-95 | -8.615850e-47 |
| Msa1261780 | Msa1359750 | 0.953001 | 7.139649e-111 | -8.615850e-47 |
| Msa0313560 | Msa1359750 | 0.804826 | 1.792745e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359750 | MtrunA17_Chr3g0115561 | 72.973 | 185 | 27 | 2 | 1 | 185 | 1 | 162 | 2.06e-89 | 258 |
| Msa1359750 | MtrunA17_Chr3g0124301 | 31.788 | 151 | 78 | 4 | 28 | 176 | 25 | 152 | 2.09e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359750 | AT4G08685.1 | 37.017 | 181 | 91 | 2 | 3 | 183 | 2 | 159 | 3.93e-37 | 126 |
| Msa1359750 | AT5G10130.1 | 32.000 | 175 | 95 | 3 | 3 | 177 | 4 | 154 | 1.77e-20 | 84.0 |
| Msa1359750 | AT1G78040.1 | 31.183 | 186 | 100 | 5 | 3 | 184 | 2 | 163 | 1.32e-19 | 81.6 |
| Msa1359750 | AT1G78040.3 | 31.183 | 186 | 100 | 5 | 3 | 184 | 2 | 163 | 1.32e-19 | 81.6 |
| Msa1359750 | AT1G78040.2 | 31.183 | 186 | 100 | 5 | 3 | 184 | 2 | 163 | 1.32e-19 | 81.6 |
Find 47 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGATCTGAGAGTAAAA+AGG | 0.219650 | tig0016718:-17140 | None:intergenic |
| CCAATTCCTGCATTTGCTTC+AGG | 0.267252 | tig0016718:-19539 | None:intergenic |
| CAAGAACCCTTTCTGCTTGA+AGG | 0.333336 | tig0016718:+17048 | Msa1359750:CDS |
| AGTTTCTCCGATTCTTCTTA+AGG | 0.360641 | tig0016718:+18220 | Msa1359750:CDS |
| ATGGCAGAGGAGGTTGCTTC+TGG | 0.397308 | tig0016718:+19504 | Msa1359750:CDS |
| CCTGAAGCAAATGCAGGAAT+TGG | 0.399028 | tig0016718:+19539 | Msa1359750:CDS |
| TCCGCTATCACTCACATTGC+TGG | 0.409222 | tig0016718:+17112 | Msa1359750:CDS |
| TGTTCTTCCAGCGATGGTTA+TGG | 0.427430 | tig0016718:+17012 | Msa1359750:CDS |
| TTGTGCCTCGACAGTTTGTT+TGG | 0.427493 | tig0016718:+18168 | Msa1359750:intron |
| GAGAAACTACATGCAGAATC+AGG | 0.427554 | tig0016718:-18205 | None:intergenic |
| AAGCAGAAAGGGTTCTTGAC+TGG | 0.430777 | tig0016718:-17043 | None:intergenic |
| AGTTGTAGCGAAAGAGCACC+TGG | 0.442879 | tig0016718:+19402 | Msa1359750:CDS |
| GTGTGTGACCCTTGCCATGC+TGG | 0.443508 | tig0016718:+17079 | Msa1359750:CDS |
| CACAACCCTTCAAGCAGAAA+GGG | 0.463227 | tig0016718:-17054 | None:intergenic |
| GGAGGCAATGTCGTTGTAAC+GGG | 0.465082 | tig0016718:-19451 | None:intergenic |
| AGCATTGGCAAACCTGTCAT+TGG | 0.466304 | tig0016718:-19472 | None:intergenic |
| ATATACAATCTATGTGGATC+AGG | 0.471477 | tig0016718:+19329 | Msa1359750:CDS |
| AGCAGAAAGGGTTCTTGACT+GGG | 0.474871 | tig0016718:-17042 | None:intergenic |
| AAGAACCCTTTCTGCTTGAA+GGG | 0.480152 | tig0016718:+17049 | Msa1359750:CDS |
| TTCTTGTAGTGTGATGCAAC+TGG | 0.485025 | tig0016718:+19303 | Msa1359750:intron |
| ACACGAACCTTAAGAAGAAT+CGG | 0.490318 | tig0016718:-18227 | None:intergenic |
| ACACAACCCTTCAAGCAGAA+AGG | 0.518785 | tig0016718:-17055 | None:intergenic |
| GGTTGCTTCTGGCTGTGTTG+AGG | 0.532355 | tig0016718:+19515 | Msa1359750:CDS |
| ACGACATTGCCTCCAATGAC+AGG | 0.532575 | tig0016718:+19460 | Msa1359750:CDS |
| TGGAGGCAATGTCGTTGTAA+CGG | 0.533908 | tig0016718:-19452 | None:intergenic |
| TGCTATGTTGTACATGGCAG+AGG | 0.540527 | tig0016718:+19491 | Msa1359750:CDS |
| CGAATGGCCATAACCATCGC+TGG | 0.546740 | tig0016718:-17019 | None:intergenic |
| TGCCAATGCTATGTTGTACA+TGG | 0.550672 | tig0016718:+19485 | Msa1359750:CDS |
| ATTATCAAGAAGCTCTGCTA+TGG | 0.556386 | tig0016718:-17521 | None:intergenic |
| ATGCGTGCTTGGTCACGCCC+AGG | 0.558603 | tig0016718:-19420 | None:intergenic |
| AACTACATGCAGAATCAGGA+TGG | 0.561827 | tig0016718:-18201 | None:intergenic |
| ATTGGCAAACCTGTCATTGG+AGG | 0.565263 | tig0016718:-19469 | None:intergenic |
| AGGGTTCTTGACTGGGCGAA+TGG | 0.567210 | tig0016718:-17035 | None:intergenic |
| GTTTCATAACCAGCATGGCA+AGG | 0.568972 | tig0016718:-17088 | None:intergenic |
| GGGTGAGAATAATGCGTGCT+TGG | 0.569887 | tig0016718:-19431 | None:intergenic |
| TGCCATGTACAACATAGCAT+TGG | 0.582518 | tig0016718:-19487 | None:intergenic |
| ACCAGCAATGTGAGTGATAG+CGG | 0.586238 | tig0016718:-17113 | None:intergenic |
| TGAGGTCCTGAAGCAAATGC+AGG | 0.589688 | tig0016718:+19533 | Msa1359750:CDS |
| TTTGTGTGTTCTTCCAGCGA+TGG | 0.596076 | tig0016718:+17006 | Msa1359750:CDS |
| TGGAGAATATACAATCTATG+TGG | 0.605358 | tig0016718:+19323 | Msa1359750:CDS |
| TCTTGATAATGTTGTTGATG+AGG | 0.614835 | tig0016718:+17534 | Msa1359750:CDS |
| CTTTCGCTACAACTACGCTC+AGG | 0.623193 | tig0016718:-19393 | None:intergenic |
| TTTCATAACCAGCATGGCAA+GGG | 0.624092 | tig0016718:-17087 | None:intergenic |
| CGGAAGTTTCATAACCAGCA+TGG | 0.624332 | tig0016718:-17093 | None:intergenic |
| ACTACATGCAGAATCAGGAT+GGG | 0.655460 | tig0016718:-18200 | None:intergenic |
| TATGTTGTACATGGCAGAGG+AGG | 0.691786 | tig0016718:+19494 | Msa1359750:CDS |
| GTTGTAGCGAAAGAGCACCT+GGG | 0.714138 | tig0016718:+19403 | Msa1359750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTAAATTCTTTAATTTT+TGG | + | tig0016718:17232-17251 | Msa1359750:intron | 10.0% |
| !!! | AATTCTTTAATTTTTGGAAA+TGG | + | tig0016718:17238-17257 | Msa1359750:intron | 15.0% |
| !!! | TTTCTCTTTTTTTATTCAAA+AGG | + | tig0016718:18586-18605 | Msa1359750:intron | 15.0% |
| !!! | TTCTCTTTTTTTATTCAAAA+GGG | + | tig0016718:18587-18606 | Msa1359750:intron | 15.0% |
| !! | ATATATGATGTATATGAAAT+TGG | + | tig0016718:18972-18991 | Msa1359750:intron | 15.0% |
| !! | TTATATATATCCTTTATCTT+TGG | - | tig0016718:19058-19077 | None:intergenic | 15.0% |
| !! | ATAGTGAAATTAAACCAAAA+GGG | - | tig0016718:17207-17226 | None:intergenic | 20.0% |
| !! | AATAGTGAAATTAAACCAAA+AGG | - | tig0016718:17208-17227 | None:intergenic | 20.0% |
| !!! | TCAATTTTGCTTTAGATTTT+AGG | + | tig0016718:17274-17293 | Msa1359750:intron | 20.0% |
| !!! | CAATTTTGCTTTAGATTTTA+GGG | + | tig0016718:17275-17294 | Msa1359750:intron | 20.0% |
| !! | ATCTATTGTTTCAAATAATC+TGG | - | tig0016718:17316-17335 | None:intergenic | 20.0% |
| !! | GTAATTGTGAGATAAAAATA+TGG | + | tig0016718:17609-17628 | Msa1359750:intron | 20.0% |
| !! | TAAAAAAAAACACCAATTTG+AGG | - | tig0016718:17872-17891 | None:intergenic | 20.0% |
| !! | TTACCTTTATAAAATGAAGT+AGG | - | tig0016718:18439-18458 | None:intergenic | 20.0% |
| !! | ATTCATTTGAATCTTTGTTA+TGG | + | tig0016718:18464-18483 | Msa1359750:intron | 20.0% |
| !!! | TTCATTTGAATCTTTGTTAT+GGG | + | tig0016718:18465-18484 | Msa1359750:intron | 20.0% |
| !!! | TATTTCTTACATCAACTTTT+TGG | + | tig0016718:19008-19027 | Msa1359750:intron | 20.0% |
| !!! | CTTTTTGGAATCAATAAAAA+TGG | + | tig0016718:19023-19042 | Msa1359750:intron | 20.0% |
| !! | GATAAAGGATATATATAACT+TGG | + | tig0016718:19060-19079 | Msa1359750:intron | 20.0% |
| ! | TCGAATGAAAAACTTAAACT+TGG | - | tig0016718:17175-17194 | None:intergenic | 25.0% |
| ! | TATGTCTATATATGAAAGTC+TGG | + | tig0016718:17587-17606 | Msa1359750:intron | 25.0% |
| ! | ATCTCAAGGTTATACATAAA+TGG | - | tig0016718:17733-17752 | None:intergenic | 25.0% |
| !!! | TGTATACCGATTTTGAAATA+TGG | + | tig0016718:17781-17800 | Msa1359750:intron | 25.0% |
| ! | AACACTCCATATTTCAAAAT+CGG | - | tig0016718:17790-17809 | None:intergenic | 25.0% |
| !! | TGTCCTACTTCATTTTATAA+AGG | + | tig0016718:18433-18452 | Msa1359750:intron | 25.0% |
| ! | TGTTATGGGTATAGAAAAAA+CGG | + | tig0016718:18479-18498 | Msa1359750:intron | 25.0% |
| !!! | CACATAATGCTTTTTGATTT+TGG | + | tig0016718:18613-18632 | Msa1359750:intron | 25.0% |
| ! | ATCAAAAACCAAAATTTCAC+AGG | - | tig0016718:18653-18672 | None:intergenic | 25.0% |
| ! | ATTTGGTAAACCATATAGTT+TGG | + | tig0016718:18741-18760 | Msa1359750:intron | 25.0% |
| ! | TTAAGAAACACCAAACTATA+TGG | - | tig0016718:18754-18773 | None:intergenic | 25.0% |
| !!! | TTGACAACTACTTTTTAGAA+TGG | - | tig0016718:18864-18883 | None:intergenic | 25.0% |
| ! | TCAAATTAATTAACTCGTAC+TGG | + | tig0016718:18927-18946 | Msa1359750:intron | 25.0% |
| ! | TGTATATGAAATTGGAAGTT+TGG | + | tig0016718:18980-18999 | Msa1359750:intron | 25.0% |
| !! | GGAATCAATAAAAATGGTTT+TGG | + | tig0016718:19029-19048 | Msa1359750:intron | 25.0% |
| !! | ACACTTTTGCTTATGATTAT+AGG | + | tig0016718:19105-19124 | Msa1359750:intron | 25.0% |
| ! | TGCTTATGTCTTAACAAATT+AGG | + | tig0016718:19142-19161 | Msa1359750:intron | 25.0% |
| !!! | AAGCTTTGAGTTGATTTATT+TGG | + | tig0016718:19234-19253 | Msa1359750:intron | 25.0% |
| !!! | GATTTATTTGGTGATGAAAT+TGG | + | tig0016718:19246-19265 | Msa1359750:intron | 25.0% |
| AAGAGATCTGAGAGTAAAAA+GGG | - | tig0016718:17142-17161 | None:intergenic | 30.0% | |
| AAAGAGATCTGAGAGTAAAA+AGG | - | tig0016718:17143-17162 | None:intergenic | 30.0% | |
| !!! | GCTTTAGATTTTAGGGTTTA+TGG | + | tig0016718:17282-17301 | Msa1359750:intron | 30.0% |
| !! | TCTTGATAATGTTGTTGATG+AGG | + | tig0016718:17534-17553 | Msa1359750:CDS | 30.0% |
| AATCAAACAACAGCTTACAA+GGG | - | tig0016718:17643-17662 | None:intergenic | 30.0% | |
| AAATCAAACAACAGCTTACA+AGG | - | tig0016718:17644-17663 | None:intergenic | 30.0% | |
| TAACCTTGAGATTATCATGA+TGG | + | tig0016718:17741-17760 | Msa1359750:intron | 30.0% | |
| TTTCCATCATGATAATCTCA+AGG | - | tig0016718:17747-17766 | None:intergenic | 30.0% | |
| ! | ACTTGTTGAATACCTCAAAT+TGG | + | tig0016718:17857-17876 | Msa1359750:intron | 30.0% |
| TTGTGAATTTGTGATGAATC+TGG | + | tig0016718:17970-17989 | Msa1359750:intron | 30.0% | |
| ACGAAACTAAGAATGCAAAA+CGG | - | tig0016718:18259-18278 | None:intergenic | 30.0% | |
| ! | AGATTTACGTTCTCAGTTTT+GGG | + | tig0016718:18366-18385 | Msa1359750:intron | 30.0% |
| AAGAAGATTTCTGTTGAATC+TGG | + | tig0016718:18521-18540 | Msa1359750:intron | 30.0% | |
| ! | TTTGGATTGTTTGCTAAGAT+TGG | + | tig0016718:18544-18563 | Msa1359750:intron | 30.0% |
| ! | TGCATTTTCCTGTGAAATTT+TGG | + | tig0016718:18642-18661 | Msa1359750:intron | 30.0% |
| ACTATATGGTTTACCAAATG+AGG | - | tig0016718:18740-18759 | None:intergenic | 30.0% | |
| CAACAAAAAATGTAAAGGGA+AGG | - | tig0016718:19180-19199 | None:intergenic | 30.0% | |
| ACGGCAACAAAAAATGTAAA+GGG | - | tig0016718:19184-19203 | None:intergenic | 30.0% | |
| TACGGCAACAAAAAATGTAA+AGG | - | tig0016718:19185-19204 | None:intergenic | 30.0% | |
| ! | ATTGGTGCTTATAAGCTTAA+AGG | + | tig0016718:19264-19283 | Msa1359750:intron | 30.0% |
| TGGAGAATATACAATCTATG+TGG | + | tig0016718:19323-19342 | Msa1359750:CDS | 30.0% | |
| ATATACAATCTATGTGGATC+AGG | + | tig0016718:19329-19348 | Msa1359750:CDS | 30.0% | |
| AGAGATCTGAGAGTAAAAAG+GGG | - | tig0016718:17141-17160 | None:intergenic | 35.0% | |
| !! | TTCGAATTTGTTCACCCTTT+TGG | + | tig0016718:17190-17209 | Msa1359750:intron | 35.0% |
| CATTTGAGTGAAGAAACATG+GGG | - | tig0016718:17378-17397 | None:intergenic | 35.0% | |
| GCATTTGAGTGAAGAAACAT+GGG | - | tig0016718:17379-17398 | None:intergenic | 35.0% | |
| TGCATTTGAGTGAAGAAACA+TGG | - | tig0016718:17380-17399 | None:intergenic | 35.0% | |
| ATTATCAAGAAGCTCTGCTA+TGG | - | tig0016718:17524-17543 | None:intergenic | 35.0% | |
| ! | GATGAGGTGATTTTTCATGT+TGG | + | tig0016718:17550-17569 | Msa1359750:intron | 35.0% |
| CTCATACAAAAATACTCCAC+CGG | - | tig0016718:18073-18092 | None:intergenic | 35.0% | |
| AGTTTCTCCGATTCTTCTTA+AGG | + | tig0016718:18220-18239 | Msa1359750:CDS | 35.0% | |
| ACACGAACCTTAAGAAGAAT+CGG | - | tig0016718:18230-18249 | None:intergenic | 35.0% | |
| TTTGCATTCTTAGTTTCGTG+TGG | + | tig0016718:18260-18279 | Msa1359750:intron | 35.0% | |
| ! | CAGATTTACGTTCTCAGTTT+TGG | + | tig0016718:18365-18384 | Msa1359750:intron | 35.0% |
| GATTTCTGTTGAATCTGGTT+TGG | + | tig0016718:18526-18545 | Msa1359750:intron | 35.0% | |
| ! | GGTTTTTGATCATACCCTTT+TGG | + | tig0016718:18663-18682 | Msa1359750:intron | 35.0% |
| TATAAACCACGTGTCAATGA+GGG | - | tig0016718:18811-18830 | None:intergenic | 35.0% | |
| ATATAAACCACGTGTCAATG+AGG | - | tig0016718:18812-18831 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTGTCCAAAGATAA+AGG | + | tig0016718:19045-19064 | Msa1359750:intron | 35.0% |
| TTGGATAGTTTCAATGACGT+GGG | + | tig0016718:19079-19098 | Msa1359750:intron | 35.0% | |
| ! | GACAACGGAACACAATTTTA+CGG | - | tig0016718:19203-19222 | None:intergenic | 35.0% |
| AAGAACCCTTTCTGCTTGAA+GGG | + | tig0016718:17049-17068 | Msa1359750:CDS | 40.0% | |
| TTTCATAACCAGCATGGCAA+GGG | - | tig0016718:17090-17109 | None:intergenic | 40.0% | |
| AAATGCAACTTCCCACAAGT+GGG | + | tig0016718:17393-17412 | Msa1359750:intron | 40.0% | |
| TGGAGTAGCTTAAGCAAACA+AGG | + | tig0016718:18018-18037 | Msa1359750:intron | 40.0% | |
| GGAGTAGCTTAAGCAAACAA+GGG | + | tig0016718:18019-18038 | Msa1359750:intron | 40.0% | |
| GAGTAGCTTAAGCAAACAAG+GGG | + | tig0016718:18020-18039 | Msa1359750:intron | 40.0% | |
| AGGGGAGAGAATTATATGTC+AGG | + | tig0016718:18038-18057 | Msa1359750:intron | 40.0% | |
| GGGGAGAGAATTATATGTCA+GGG | + | tig0016718:18039-18058 | Msa1359750:intron | 40.0% | |
| ATATGTCAGGGTCTATGATC+CGG | + | tig0016718:18051-18070 | Msa1359750:intron | 40.0% | |
| ! | TTTTGTATGAGCCAGTGTCT+CGG | + | tig0016718:18082-18101 | Msa1359750:intron | 40.0% |
| TTCTTCCAAACAAACTGTCG+AGG | - | tig0016718:18176-18195 | None:intergenic | 40.0% | |
| ACTACATGCAGAATCAGGAT+GGG | - | tig0016718:18203-18222 | None:intergenic | 40.0% | |
| AACTACATGCAGAATCAGGA+TGG | - | tig0016718:18204-18223 | None:intergenic | 40.0% | |
| GAGAAACTACATGCAGAATC+AGG | - | tig0016718:18208-18227 | None:intergenic | 40.0% | |
| !!! | GTTCTCAGTTTTGGGCAATT+TGG | + | tig0016718:18374-18393 | Msa1359750:intron | 40.0% |
| CTTGGATAGTTTCAATGACG+TGG | + | tig0016718:19078-19097 | Msa1359750:intron | 40.0% | |
| GCTTATAAGCACATCGACAA+CGG | - | tig0016718:19218-19237 | None:intergenic | 40.0% | |
| TTCTTGTAGTGTGATGCAAC+TGG | + | tig0016718:19303-19322 | Msa1359750:intron | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | + | tig0016718:19485-19504 | Msa1359750:CDS | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | - | tig0016718:19490-19509 | None:intergenic | 40.0% | |
| TTTGTGTGTTCTTCCAGCGA+TGG | + | tig0016718:17006-17025 | Msa1359750:CDS | 45.0% | |
| TGTTCTTCCAGCGATGGTTA+TGG | + | tig0016718:17012-17031 | Msa1359750:CDS | 45.0% | |
| AGCAGAAAGGGTTCTTGACT+GGG | - | tig0016718:17045-17064 | None:intergenic | 45.0% | |
| AAGCAGAAAGGGTTCTTGAC+TGG | - | tig0016718:17046-17065 | None:intergenic | 45.0% | |
| CAAGAACCCTTTCTGCTTGA+AGG | + | tig0016718:17048-17067 | Msa1359750:CDS | 45.0% | |
| CACAACCCTTCAAGCAGAAA+GGG | - | tig0016718:17057-17076 | None:intergenic | 45.0% | |
| ACACAACCCTTCAAGCAGAA+AGG | - | tig0016718:17058-17077 | None:intergenic | 45.0% | |
| GTTTCATAACCAGCATGGCA+AGG | - | tig0016718:17091-17110 | None:intergenic | 45.0% | |
| CGGAAGTTTCATAACCAGCA+TGG | - | tig0016718:17096-17115 | None:intergenic | 45.0% | |
| ACCAGCAATGTGAGTGATAG+CGG | - | tig0016718:17116-17135 | None:intergenic | 45.0% | |
| CAAATGCAACTTCCCACAAG+TGG | + | tig0016718:17392-17411 | Msa1359750:intron | 45.0% | |
| TTTGTATGAGCCAGTGTCTC+GGG | + | tig0016718:18083-18102 | Msa1359750:intron | 45.0% | |
| AACAAACTGTCGAGGCACAA+CGG | - | tig0016718:18168-18187 | None:intergenic | 45.0% | |
| ! | TTGTGCCTCGACAGTTTGTT+TGG | + | tig0016718:18168-18187 | Msa1359750:intron | 45.0% |
| TTCTTCAGCCAAGCAACACT+AGG | + | tig0016718:18697-18716 | Msa1359750:intron | 45.0% | |
| ACTAGGTGAGGGATAAGCTT+TGG | + | tig0016718:18714-18733 | Msa1359750:intron | 45.0% | |
| ! | GGATAAGCTTTGGCCTCATT+TGG | + | tig0016718:18724-18743 | Msa1359750:intron | 45.0% |
| GATAGTTTCAATGACGTGGG+TGG | + | tig0016718:19082-19101 | Msa1359750:intron | 45.0% | |
| TGGAGGCAATGTCGTTGTAA+CGG | - | tig0016718:19455-19474 | None:intergenic | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | - | tig0016718:19472-19491 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | - | tig0016718:19475-19494 | None:intergenic | 45.0% |
| TGCTATGTTGTACATGGCAG+AGG | + | tig0016718:19491-19510 | Msa1359750:CDS | 45.0% | |
| TATGTTGTACATGGCAGAGG+AGG | + | tig0016718:19494-19513 | Msa1359750:CDS | 45.0% | |
| CCAATTCCTGCATTTGCTTC+AGG | - | tig0016718:19542-19561 | None:intergenic | 45.0% | |
| CCTGAAGCAAATGCAGGAAT+TGG | + | tig0016718:19539-19558 | Msa1359750:CDS | 45.0% | |
| TCCGCTATCACTCACATTGC+TGG | + | tig0016718:17112-17131 | Msa1359750:CDS | 50.0% | |
| ACTTCCCACAAGTGGGCATT+TGG | + | tig0016718:17400-17419 | Msa1359750:intron | 50.0% | |
| ACCACCAAATGCCCACTTGT+GGG | - | tig0016718:17407-17426 | None:intergenic | 50.0% | |
| TACCACCAAATGCCCACTTG+TGG | - | tig0016718:17408-17427 | None:intergenic | 50.0% | |
| ! | GATGAATCTGGCTCATGTCG+AGG | + | tig0016718:17982-18001 | Msa1359750:intron | 50.0% |
| !!! | GATCATACCCTTTTGGAGCG+TGG | + | tig0016718:18670-18689 | Msa1359750:intron | 50.0% |
| GAACACACCACGCTCCAAAA+GGG | - | tig0016718:18680-18699 | None:intergenic | 50.0% | |
| AGAACACACCACGCTCCAAA+AGG | - | tig0016718:18681-18700 | None:intergenic | 50.0% | |
| AGCCAAGCAACACTAGGTGA+GGG | + | tig0016718:18703-18722 | Msa1359750:intron | 50.0% | |
| ! | ATCCCTCACCTAGTGTTGCT+TGG | - | tig0016718:18708-18727 | None:intergenic | 50.0% |
| GTCATACCCTCATTGACACG+TGG | + | tig0016718:18802-18821 | Msa1359750:intron | 50.0% | |
| GATAGTGCTCAGTGCTATGC+TGG | - | tig0016718:18909-18928 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | - | tig0016718:19396-19415 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | + | tig0016718:19402-19421 | Msa1359750:CDS | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | + | tig0016718:19403-19422 | Msa1359750:CDS | 50.0% |
| GGGTGAGAATAATGCGTGCT+TGG | - | tig0016718:19434-19453 | None:intergenic | 50.0% | |
| GGAGGCAATGTCGTTGTAAC+GGG | - | tig0016718:19454-19473 | None:intergenic | 50.0% | |
| ACGACATTGCCTCCAATGAC+AGG | + | tig0016718:19460-19479 | Msa1359750:CDS | 50.0% | |
| TGAGGTCCTGAAGCAAATGC+AGG | + | tig0016718:19533-19552 | Msa1359750:CDS | 50.0% | |
| CGAATGGCCATAACCATCGC+TGG | - | tig0016718:17022-17041 | None:intergenic | 55.0% | |
| AGGGTTCTTGACTGGGCGAA+TGG | - | tig0016718:17038-17057 | None:intergenic | 55.0% | |
| TCCCACAAGTGGGCATTTGG+TGG | + | tig0016718:17403-17422 | Msa1359750:intron | 55.0% | |
| GTCGAGGATGATGTGCTCGA+TGG | + | tig0016718:17998-18017 | Msa1359750:intron | 55.0% | |
| TGTCAGGGTCTATGATCCGG+TGG | + | tig0016718:18054-18073 | Msa1359750:intron | 55.0% | |
| !! | CAGTGTCTCGGGTTGAGGAA+GGG | + | tig0016718:18094-18113 | Msa1359750:intron | 55.0% |
| !! | AGTGTCTCGGGTTGAGGAAG+GGG | + | tig0016718:18095-18114 | Msa1359750:intron | 55.0% |
| AACAGCACGAAACGCGACGA+CGG | - | tig0016718:18402-18421 | None:intergenic | 55.0% | |
| CAGCCAAGCAACACTAGGTG+AGG | + | tig0016718:18702-18721 | Msa1359750:intron | 55.0% | |
| ATGGCAGAGGAGGTTGCTTC+TGG | + | tig0016718:19504-19523 | Msa1359750:CDS | 55.0% | |
| ! | GGTTGCTTCTGGCTGTGTTG+AGG | + | tig0016718:19515-19534 | Msa1359750:CDS | 55.0% |
| GTGTGTGACCCTTGCCATGC+TGG | + | tig0016718:17079-17098 | Msa1359750:CDS | 60.0% | |
| ! | TGAGCCAGTGTCTCGGGTTG+AGG | + | tig0016718:18089-18108 | Msa1359750:intron | 60.0% |
| CCTTCCTCAACCCGAGACAC+TGG | - | tig0016718:18096-18115 | None:intergenic | 60.0% | |
| !! | CCAGTGTCTCGGGTTGAGGA+AGG | + | tig0016718:18093-18112 | Msa1359750:intron | 60.0% |
| !! | TCGGGTTGAGGAAGGGGTCT+AGG | + | tig0016718:18101-18120 | Msa1359750:intron | 60.0% |
| ! | CGGGTTGAGGAAGGGGTCTA+GGG | + | tig0016718:18102-18121 | Msa1359750:intron | 60.0% |
| ACAGCACGAAACGCGACGAC+GGG | - | tig0016718:18401-18420 | None:intergenic | 60.0% | |
| AGGCACAACGGCGTGGCTGA+TGG | - | tig0016718:18156-18175 | None:intergenic | 65.0% | |
| ACTGTCGAGGCACAACGGCG+TGG | - | tig0016718:18163-18182 | None:intergenic | 65.0% | |
| ATGCGTGCTTGGTCACGCCC+AGG | - | tig0016718:19423-19442 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016718 | gene | 16977 | 19575 | 16977 | ID=Msa1359750;Name=Msa1359750 |
| tig0016718 | mRNA | 16977 | 19575 | 16977 | ID=Msa1359750-mRNA-1;Parent=Msa1359750;Name=Msa1359750-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|0.33|0.75|4|0|185 |
| tig0016718 | exon | 16977 | 17175 | 16977 | ID=Msa1359750-mRNA-1:exon:11552;Parent=Msa1359750-mRNA-1 |
| tig0016718 | exon | 17521 | 17555 | 17521 | ID=Msa1359750-mRNA-1:exon:11553;Parent=Msa1359750-mRNA-1 |
| tig0016718 | exon | 18182 | 18241 | 18182 | ID=Msa1359750-mRNA-1:exon:11554;Parent=Msa1359750-mRNA-1 |
| tig0016718 | exon | 19312 | 19575 | 19312 | ID=Msa1359750-mRNA-1:exon:11555;Parent=Msa1359750-mRNA-1 |
| tig0016718 | CDS | 16977 | 17175 | 16977 | ID=Msa1359750-mRNA-1:cds;Parent=Msa1359750-mRNA-1 |
| tig0016718 | CDS | 17521 | 17555 | 17521 | ID=Msa1359750-mRNA-1:cds;Parent=Msa1359750-mRNA-1 |
| tig0016718 | CDS | 18182 | 18241 | 18182 | ID=Msa1359750-mRNA-1:cds;Parent=Msa1359750-mRNA-1 |
| tig0016718 | CDS | 19312 | 19575 | 19312 | ID=Msa1359750-mRNA-1:cds;Parent=Msa1359750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
