Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1261780 | XP_013460852.1 | 64.246 | 179 | 26 | 2 | 1 | 179 | 1 | 141 | 2.71e-69 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1261780 | B7FN25 | 64.246 | 179 | 26 | 2 | 1 | 179 | 1 | 141 | 1.29e-69 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1261780 | Msa1359750 | 0.953001 | 7.139649e-111 | -8.615850e-47 |
| Msa1261780 | Msa1422720 | 0.950465 | 1.558121e-108 | -8.615850e-47 |
| Msa0313560 | Msa1261780 | 0.818447 | 1.951205e-52 | -8.615850e-47 |
| Msa0493250 | Msa1261780 | 0.816796 | 4.598268e-52 | -8.615850e-47 |
| Msa0857220 | Msa1261780 | 0.818482 | 1.915889e-52 | -8.615850e-47 |
| Msa0927290 | Msa1261780 | 0.803240 | 3.831534e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1261780 | MtrunA17_Chr3g0115561 | 64.246 | 179 | 26 | 2 | 1 | 179 | 1 | 141 | 2.49e-73 | 218 |
| Msa1261780 | MtrunA17_Chr3g0124301 | 29.221 | 154 | 64 | 3 | 28 | 177 | 25 | 137 | 1.64e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1261780 | AT4G08685.1 | 36.364 | 176 | 74 | 2 | 3 | 178 | 2 | 139 | 1.99e-32 | 114 |
| Msa1261780 | AT1G78040.1 | 29.213 | 178 | 86 | 4 | 3 | 177 | 2 | 142 | 2.80e-17 | 75.5 |
| Msa1261780 | AT1G78040.3 | 29.213 | 178 | 86 | 4 | 3 | 177 | 2 | 142 | 2.80e-17 | 75.5 |
| Msa1261780 | AT1G78040.2 | 29.213 | 178 | 86 | 4 | 3 | 177 | 2 | 142 | 2.80e-17 | 75.5 |
| Msa1261780 | AT5G10130.1 | 31.429 | 175 | 81 | 4 | 3 | 177 | 4 | 139 | 4.67e-16 | 72.0 |
Find 52 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTTACGTTCTCAGTTT+TGG | 0.193412 | 8_2:+64077855 | Msa1261780:intron |
| CCAATTCCTGCATTTGCTTC+AGG | 0.267252 | 8_2:-64079029 | None:intergenic |
| TGTCCTACTTCACTTTATAA+AGG | 0.351390 | 8_2:+64077923 | Msa1261780:CDS |
| CAAGAACCCTTTCTGCTTGA+AGG | 0.359097 | 8_2:+64076538 | Msa1261780:CDS |
| AGTTTCTCCGATTCTTCTTA+AGG | 0.360641 | 8_2:+64077710 | Msa1261780:CDS |
| ATGGCATAGGAGGTTGCTTC+TGG | 0.397308 | 8_2:+64078994 | Msa1261780:exon |
| CCTGAAGCAAATGCAGGAAT+TGG | 0.399028 | 8_2:+64079029 | Msa1261780:three_prime_UTR |
| TCCGCTATCACTCACATTGC+TGG | 0.409222 | 8_2:+64076602 | Msa1261780:CDS |
| TGTTCTTCCAGCGATGGTTA+TGG | 0.427430 | 8_2:+64076502 | Msa1261780:CDS |
| TTGTGCCTCGACAGTTTGTT+TGG | 0.427493 | 8_2:+64077658 | Msa1261780:intron |
| GAGAAACTACATGCAGAATC+AGG | 0.427554 | 8_2:-64077695 | None:intergenic |
| AAGCAGAAAGGGTTCTTGAC+TGG | 0.430777 | 8_2:-64076533 | None:intergenic |
| GGAGGCAATGCCGTTGTAAC+GGG | 0.439821 | 8_2:-64078941 | None:intergenic |
| AGTTGTAGCGAAAGAGCACC+TGG | 0.442879 | 8_2:+64078892 | Msa1261780:CDS |
| GTGTGTGACCCTTGCCATGC+TGG | 0.443508 | 8_2:+64076569 | Msa1261780:CDS |
| ACAGCACGAAACGCGACGAC+GGG | 0.450887 | 8_2:-64077888 | None:intergenic |
| TTACCTTTATAAAGTGAAGT+AGG | 0.462197 | 8_2:-64077926 | None:intergenic |
| AGCATTGGCAAACCTGTCAT+TGG | 0.466304 | 8_2:-64078962 | None:intergenic |
| ATATACAATCTATGTGGATC+AGG | 0.471477 | 8_2:+64078819 | Msa1261780:CDS |
| AGCAGAAAGGGTTCTTGACT+GGG | 0.474871 | 8_2:-64076532 | None:intergenic |
| CACGACCCTTCAAGCAGAAA+GGG | 0.481464 | 8_2:-64076544 | None:intergenic |
| TTCTTGTAGTGTGATGCAAC+TGG | 0.485025 | 8_2:+64078793 | Msa1261780:intron |
| ACACGAACCTTAAGAAGAAT+CGG | 0.490318 | 8_2:-64077717 | None:intergenic |
| AAGAACCCTTTCTGCTTGAA+GGG | 0.515228 | 8_2:+64076539 | Msa1261780:CDS |
| TGGAGGCAATGCCGTTGTAA+CGG | 0.522858 | 8_2:-64078942 | None:intergenic |
| GGTTGCTTCTGGCTGTGTTG+AGG | 0.532355 | 8_2:+64079005 | Msa1261780:three_prime_UTR |
| ACGGCATTGCCTCCAATGAC+AGG | 0.539090 | 8_2:+64078950 | Msa1261780:CDS |
| ACACGACCCTTCAAGCAGAA+AGG | 0.544506 | 8_2:-64076545 | None:intergenic |
| CGAATGGCCATAACCATCGC+TGG | 0.546740 | 8_2:-64076509 | None:intergenic |
| TGCCAATGCTATGTTGTACA+TGG | 0.548007 | 8_2:+64078975 | Msa1261780:CDS |
| ATTATCAAGAAGCTCTGCTA+TGG | 0.556386 | 8_2:-64077011 | None:intergenic |
| ATGCGTGCTTGGTCACGCCC+AGG | 0.558603 | 8_2:-64078910 | None:intergenic |
| AACTACATGCAGAATCAGGA+TGG | 0.561827 | 8_2:-64077691 | None:intergenic |
| ATTGGCAAACCTGTCATTGG+AGG | 0.565263 | 8_2:-64078959 | None:intergenic |
| AGGGTTCTTGACTGGGCGAA+TGG | 0.567210 | 8_2:-64076525 | None:intergenic |
| GTTTCATAACCAGCATGGCA+AGG | 0.568972 | 8_2:-64076578 | None:intergenic |
| GGGTGAGAATAATGCGTGCT+TGG | 0.569887 | 8_2:-64078921 | None:intergenic |
| ATTATTCTCACCCGTTACAA+CGG | 0.576439 | 8_2:+64078931 | Msa1261780:CDS |
| TGCCATGTACAACATAGCAT+TGG | 0.581264 | 8_2:-64078977 | None:intergenic |
| AACAGCACGAAACGCGACGA+CGG | 0.583931 | 8_2:-64077889 | None:intergenic |
| ACCAGCAATGTGAGTGATAG+CGG | 0.586238 | 8_2:-64076603 | None:intergenic |
| TGAGGTCCTGAAGCAAATGC+AGG | 0.589688 | 8_2:+64079023 | Msa1261780:three_prime_UTR |
| TTTGTGTGTTCTTCCAGCGA+TGG | 0.596076 | 8_2:+64076496 | Msa1261780:CDS |
| TGCTATGTTGTACATGGCAT+AGG | 0.596188 | 8_2:+64078981 | Msa1261780:CDS |
| TGGAGAATATACAATCTATG+TGG | 0.605358 | 8_2:+64078813 | Msa1261780:CDS |
| TCTTGATAATGTTGTTGATG+AGG | 0.614835 | 8_2:+64077024 | Msa1261780:CDS |
| CTTTCGCTACAACTACGCTC+AGG | 0.623193 | 8_2:-64078883 | None:intergenic |
| TTTCATAACCAGCATGGCAA+GGG | 0.624092 | 8_2:-64076577 | None:intergenic |
| CGGAAGTTTCATAACCAGCA+TGG | 0.624332 | 8_2:-64076583 | None:intergenic |
| TATGTTGTACATGGCATAGG+AGG | 0.654261 | 8_2:+64078984 | Msa1261780:exon |
| ACTACATGCAGAATCAGGAT+GGG | 0.655460 | 8_2:-64077690 | None:intergenic |
| GTTGTAGCGAAAGAGCACCT+GGG | 0.714138 | 8_2:+64078893 | Msa1261780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTAAATTCTTTAATTTT+TGG | + | chr8_2:64076722-64076741 | Msa1261780:intron | 10.0% |
| !!! | AATTCTTTAATTTTTGGAAA+TGG | + | chr8_2:64076728-64076747 | Msa1261780:intron | 15.0% |
| !!! | TTTCTCTTTTTTTATTCAAA+AGG | + | chr8_2:64078076-64078095 | Msa1261780:intron | 15.0% |
| !!! | TTCTCTTTTTTTATTCAAAA+GGG | + | chr8_2:64078077-64078096 | Msa1261780:intron | 15.0% |
| !! | ATATATGATGTATATGAAAT+TGG | + | chr8_2:64078462-64078481 | Msa1261780:intron | 15.0% |
| !! | TTATATATATCCTTTATCTT+TGG | - | chr8_2:64078548-64078567 | None:intergenic | 15.0% |
| !! | ATAGTGAAATTAAACCAAAA+GGG | - | chr8_2:64076697-64076716 | None:intergenic | 20.0% |
| !! | AATAGTGAAATTAAACCAAA+AGG | - | chr8_2:64076698-64076717 | None:intergenic | 20.0% |
| !! | ATCTATTGTTTCAAATAATC+TGG | - | chr8_2:64076806-64076825 | None:intergenic | 20.0% |
| !! | GTAATTGTGAGATAAAAATA+TGG | + | chr8_2:64077099-64077118 | Msa1261780:intron | 20.0% |
| !! | TAAAAAAAAACACCAATTTG+AGG | - | chr8_2:64077362-64077381 | None:intergenic | 20.0% |
| !! | ATTCATTTGAATCTTTGTTA+TGG | + | chr8_2:64077954-64077973 | Msa1261780:intron | 20.0% |
| !!! | TTCATTTGAATCTTTGTTAT+GGG | + | chr8_2:64077955-64077974 | Msa1261780:intron | 20.0% |
| !!! | TATTTCTTACATCAACTTTT+TGG | + | chr8_2:64078498-64078517 | Msa1261780:intron | 20.0% |
| !!! | CTTTTTGGAATCAATAAAAA+TGG | + | chr8_2:64078513-64078532 | Msa1261780:intron | 20.0% |
| !! | GATAAAGGATATATATAACT+TGG | + | chr8_2:64078550-64078569 | Msa1261780:intron | 20.0% |
| ! | TCGAATGAAAAACTTAAACT+TGG | - | chr8_2:64076665-64076684 | None:intergenic | 25.0% |
| !!! | GCTTTAGATTTTAGAGTTTA+TGG | + | chr8_2:64076772-64076791 | Msa1261780:intron | 25.0% |
| ! | TATGTCTATATATGAAAGTC+TGG | + | chr8_2:64077077-64077096 | Msa1261780:intron | 25.0% |
| ! | ATCTCAAGGTTATACATAAA+TGG | - | chr8_2:64077223-64077242 | None:intergenic | 25.0% |
| !!! | TGTATACCGATTTTGAAATA+TGG | + | chr8_2:64077271-64077290 | Msa1261780:intron | 25.0% |
| ! | AACACTCCATATTTCAAAAT+CGG | - | chr8_2:64077280-64077299 | None:intergenic | 25.0% |
| ! | ACGAAAATAAGAATGCAAAA+CGG | - | chr8_2:64077749-64077768 | None:intergenic | 25.0% |
| ! | TTACCTTTATAAAGTGAAGT+AGG | - | chr8_2:64077929-64077948 | None:intergenic | 25.0% |
| ! | TGTTATGGGTATAGAAAAAA+CGG | + | chr8_2:64077969-64077988 | Msa1261780:intron | 25.0% |
| !!! | CACATAATGCTTTTTGATTT+TGG | + | chr8_2:64078103-64078122 | Msa1261780:intron | 25.0% |
| !! | TGCATTTTTCTGTGAAATTT+TGG | + | chr8_2:64078132-64078151 | Msa1261780:intron | 25.0% |
| ! | ATTTGGTAAACCATATAGTT+TGG | + | chr8_2:64078231-64078250 | Msa1261780:intron | 25.0% |
| ! | TTAAGAAACACCAAACTATA+TGG | - | chr8_2:64078244-64078263 | None:intergenic | 25.0% |
| !!! | TTGACAACTACTTTTTAGAA+TGG | - | chr8_2:64078354-64078373 | None:intergenic | 25.0% |
| ! | TCAAATTAATTAACTCGTAC+TGG | + | chr8_2:64078417-64078436 | Msa1261780:intron | 25.0% |
| ! | TGTATATGAAATTGGAAGTT+TGG | + | chr8_2:64078470-64078489 | Msa1261780:intron | 25.0% |
| !! | GGAATCAATAAAAATGGTTT+TGG | + | chr8_2:64078519-64078538 | Msa1261780:intron | 25.0% |
| !! | ACACTTTTGCTTATGATTAT+AGG | + | chr8_2:64078595-64078614 | Msa1261780:intron | 25.0% |
| ! | TGCTTATGTCTTAACAAATT+AGG | + | chr8_2:64078632-64078651 | Msa1261780:intron | 25.0% |
| !!! | AAGCTTTGAGTTGATTTATT+TGG | + | chr8_2:64078724-64078743 | Msa1261780:intron | 25.0% |
| !!! | GATTTATTTGGTGATGAAAT+TGG | + | chr8_2:64078736-64078755 | Msa1261780:intron | 25.0% |
| AAGAGATCTGAGAGTAAAAA+GGG | - | chr8_2:64076632-64076651 | None:intergenic | 30.0% | |
| AAAGAGATCTGAGAGTAAAA+AGG | - | chr8_2:64076633-64076652 | None:intergenic | 30.0% | |
| !! | TCTTGATAATGTTGTTGATG+AGG | + | chr8_2:64077024-64077043 | Msa1261780:CDS | 30.0% |
| AATCAAACAACAGCTTACAA+GGG | - | chr8_2:64077133-64077152 | None:intergenic | 30.0% | |
| AAATCAAACAACAGCTTACA+AGG | - | chr8_2:64077134-64077153 | None:intergenic | 30.0% | |
| TAACCTTGAGATTATCATGA+TGG | + | chr8_2:64077231-64077250 | Msa1261780:intron | 30.0% | |
| TTTCCATCATGATAATCTCA+AGG | - | chr8_2:64077237-64077256 | None:intergenic | 30.0% | |
| ! | ACTTGTTGAATACCTCAAAT+TGG | + | chr8_2:64077347-64077366 | Msa1261780:intron | 30.0% |
| TTGTGAATTTGTGATGAATC+TGG | + | chr8_2:64077460-64077479 | Msa1261780:intron | 30.0% | |
| !!! | TTTGCATTCTTATTTTCGTG+TGG | + | chr8_2:64077750-64077769 | Msa1261780:intron | 30.0% |
| ! | AGATTTACGTTCTCAGTTTT+GGG | + | chr8_2:64077856-64077875 | Msa1261780:intron | 30.0% |
| TGTCCTACTTCACTTTATAA+AGG | + | chr8_2:64077923-64077942 | Msa1261780:CDS | 30.0% | |
| AAGAAGATTTCTGTTGAATC+TGG | + | chr8_2:64078011-64078030 | Msa1261780:intron | 30.0% | |
| ! | TTTGGATTGTTTGCTAAGAT+TGG | + | chr8_2:64078034-64078053 | Msa1261780:intron | 30.0% |
| ACTATATGGTTTACCAAATG+AGG | - | chr8_2:64078230-64078249 | None:intergenic | 30.0% | |
| CAACAAAAAATGTAAAGGGA+AGG | - | chr8_2:64078670-64078689 | None:intergenic | 30.0% | |
| ACGGCAACAAAAAATGTAAA+GGG | - | chr8_2:64078674-64078693 | None:intergenic | 30.0% | |
| TACGGCAACAAAAAATGTAA+AGG | - | chr8_2:64078675-64078694 | None:intergenic | 30.0% | |
| ! | ATTGGTGCTTATAAGCTTAA+AGG | + | chr8_2:64078754-64078773 | Msa1261780:intron | 30.0% |
| TGGAGAATATACAATCTATG+TGG | + | chr8_2:64078813-64078832 | Msa1261780:CDS | 30.0% | |
| ATATACAATCTATGTGGATC+AGG | + | chr8_2:64078819-64078838 | Msa1261780:CDS | 30.0% | |
| AGAGATCTGAGAGTAAAAAG+GGG | - | chr8_2:64076631-64076650 | None:intergenic | 35.0% | |
| !! | TTCGAATTTGTTCACCCTTT+TGG | + | chr8_2:64076680-64076699 | Msa1261780:intron | 35.0% |
| CATTTGAGTGAAGAAACATG+GGG | - | chr8_2:64076868-64076887 | None:intergenic | 35.0% | |
| GCATTTGAGTGAAGAAACAT+GGG | - | chr8_2:64076869-64076888 | None:intergenic | 35.0% | |
| TGCATTTGAGTGAAGAAACA+TGG | - | chr8_2:64076870-64076889 | None:intergenic | 35.0% | |
| CAGACTTCTTTATGACTACT+TGG | + | chr8_2:64076941-64076960 | Msa1261780:intron | 35.0% | |
| ATTATCAAGAAGCTCTGCTA+TGG | - | chr8_2:64077014-64077033 | None:intergenic | 35.0% | |
| ! | GATGAGGTGATTTTTCATGT+TGG | + | chr8_2:64077040-64077059 | Msa1261780:intron | 35.0% |
| CTCATACAAAAATACTCCAC+CGG | - | chr8_2:64077563-64077582 | None:intergenic | 35.0% | |
| AGTTTCTCCGATTCTTCTTA+AGG | + | chr8_2:64077710-64077729 | Msa1261780:CDS | 35.0% | |
| ACACGAACCTTAAGAAGAAT+CGG | - | chr8_2:64077720-64077739 | None:intergenic | 35.0% | |
| ! | CAGATTTACGTTCTCAGTTT+TGG | + | chr8_2:64077855-64077874 | Msa1261780:intron | 35.0% |
| GATTTCTGTTGAATCTGGTT+TGG | + | chr8_2:64078016-64078035 | Msa1261780:intron | 35.0% | |
| ! | GGTTTTTGATCATACCCTTT+TGG | + | chr8_2:64078153-64078172 | Msa1261780:intron | 35.0% |
| TATAAACCACGTGTCAATGA+GGG | - | chr8_2:64078301-64078320 | None:intergenic | 35.0% | |
| ATATAAACCACGTGTCAATG+AGG | - | chr8_2:64078302-64078321 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTGTCCAAAGATAA+AGG | + | chr8_2:64078535-64078554 | Msa1261780:intron | 35.0% |
| TTGGATAGTTTCAATGACGT+GGG | + | chr8_2:64078569-64078588 | Msa1261780:intron | 35.0% | |
| ! | GACAACGGAACACAATTTTA+CGG | - | chr8_2:64078693-64078712 | None:intergenic | 35.0% |
| ATTATTCTCACCCGTTACAA+CGG | + | chr8_2:64078931-64078950 | Msa1261780:CDS | 35.0% | |
| AAGAACCCTTTCTGCTTGAA+GGG | + | chr8_2:64076539-64076558 | Msa1261780:CDS | 40.0% | |
| TTTCATAACCAGCATGGCAA+GGG | - | chr8_2:64076580-64076599 | None:intergenic | 40.0% | |
| AAATGCAACTTCCCACAAGT+GGG | + | chr8_2:64076883-64076902 | Msa1261780:intron | 40.0% | |
| TGGAGTAGCTTAAGCAAACA+AGG | + | chr8_2:64077508-64077527 | Msa1261780:intron | 40.0% | |
| GGAGTAGCTTAAGCAAACAA+GGG | + | chr8_2:64077509-64077528 | Msa1261780:intron | 40.0% | |
| GAGTAGCTTAAGCAAACAAG+GGG | + | chr8_2:64077510-64077529 | Msa1261780:intron | 40.0% | |
| AGGGGAGAGAATTATATGTC+AGG | + | chr8_2:64077528-64077547 | Msa1261780:intron | 40.0% | |
| GGGGAGAGAATTATATGTCA+GGG | + | chr8_2:64077529-64077548 | Msa1261780:intron | 40.0% | |
| ATATGTCAGGGTCTATGATC+CGG | + | chr8_2:64077541-64077560 | Msa1261780:intron | 40.0% | |
| ! | TTTTGTATGAGCCAGTGTCT+CGG | + | chr8_2:64077572-64077591 | Msa1261780:intron | 40.0% |
| TTCTTCCAAACAAACTGTCG+AGG | - | chr8_2:64077666-64077685 | None:intergenic | 40.0% | |
| ACTACATGCAGAATCAGGAT+GGG | - | chr8_2:64077693-64077712 | None:intergenic | 40.0% | |
| AACTACATGCAGAATCAGGA+TGG | - | chr8_2:64077694-64077713 | None:intergenic | 40.0% | |
| GAGAAACTACATGCAGAATC+AGG | - | chr8_2:64077698-64077717 | None:intergenic | 40.0% | |
| !!! | GTTCTCAGTTTTGGGCAATT+TGG | + | chr8_2:64077864-64077883 | Msa1261780:CDS | 40.0% |
| CTTGGATAGTTTCAATGACG+TGG | + | chr8_2:64078568-64078587 | Msa1261780:intron | 40.0% | |
| GCTTATAAGCACATCGACAA+CGG | - | chr8_2:64078708-64078727 | None:intergenic | 40.0% | |
| TTCTTGTAGTGTGATGCAAC+TGG | + | chr8_2:64078793-64078812 | Msa1261780:intron | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | + | chr8_2:64078975-64078994 | Msa1261780:CDS | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | - | chr8_2:64078980-64078999 | None:intergenic | 40.0% | |
| TGCTATGTTGTACATGGCAT+AGG | + | chr8_2:64078981-64079000 | Msa1261780:CDS | 40.0% | |
| TATGTTGTACATGGCATAGG+AGG | + | chr8_2:64078984-64079003 | Msa1261780:exon | 40.0% | |
| TTTGTGTGTTCTTCCAGCGA+TGG | + | chr8_2:64076496-64076515 | Msa1261780:CDS | 45.0% | |
| TGTTCTTCCAGCGATGGTTA+TGG | + | chr8_2:64076502-64076521 | Msa1261780:CDS | 45.0% | |
| AGCAGAAAGGGTTCTTGACT+GGG | - | chr8_2:64076535-64076554 | None:intergenic | 45.0% | |
| AAGCAGAAAGGGTTCTTGAC+TGG | - | chr8_2:64076536-64076555 | None:intergenic | 45.0% | |
| CAAGAACCCTTTCTGCTTGA+AGG | + | chr8_2:64076538-64076557 | Msa1261780:CDS | 45.0% | |
| GTTTCATAACCAGCATGGCA+AGG | - | chr8_2:64076581-64076600 | None:intergenic | 45.0% | |
| CGGAAGTTTCATAACCAGCA+TGG | - | chr8_2:64076586-64076605 | None:intergenic | 45.0% | |
| ACCAGCAATGTGAGTGATAG+CGG | - | chr8_2:64076606-64076625 | None:intergenic | 45.0% | |
| CAAATGCAACTTCCCACAAG+TGG | + | chr8_2:64076882-64076901 | Msa1261780:intron | 45.0% | |
| TTTGTATGAGCCAGTGTCTC+GGG | + | chr8_2:64077573-64077592 | Msa1261780:intron | 45.0% | |
| AACAAACTGTCGAGGCACAA+CGG | - | chr8_2:64077658-64077677 | None:intergenic | 45.0% | |
| ! | TTGTGCCTCGACAGTTTGTT+TGG | + | chr8_2:64077658-64077677 | Msa1261780:intron | 45.0% |
| TTCTTCAGCCAAGCAACACT+AGG | + | chr8_2:64078187-64078206 | Msa1261780:intron | 45.0% | |
| ACTAGGTGAGGGATAAGCTT+TGG | + | chr8_2:64078204-64078223 | Msa1261780:intron | 45.0% | |
| ! | GGATAAGCTTTGGCCTCATT+TGG | + | chr8_2:64078214-64078233 | Msa1261780:intron | 45.0% |
| GATAGTTTCAATGACGTGGG+TGG | + | chr8_2:64078572-64078591 | Msa1261780:intron | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | - | chr8_2:64078962-64078981 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | - | chr8_2:64078965-64078984 | None:intergenic | 45.0% |
| CCAATTCCTGCATTTGCTTC+AGG | - | chr8_2:64079032-64079051 | None:intergenic | 45.0% | |
| CCTGAAGCAAATGCAGGAAT+TGG | + | chr8_2:64079029-64079048 | Msa1261780:three_prime_UTR | 45.0% | |
| CACGACCCTTCAAGCAGAAA+GGG | - | chr8_2:64076547-64076566 | None:intergenic | 50.0% | |
| ACACGACCCTTCAAGCAGAA+AGG | - | chr8_2:64076548-64076567 | None:intergenic | 50.0% | |
| TCCGCTATCACTCACATTGC+TGG | + | chr8_2:64076602-64076621 | Msa1261780:CDS | 50.0% | |
| ACTTCCCACAAGTGGGCATT+TGG | + | chr8_2:64076890-64076909 | Msa1261780:intron | 50.0% | |
| ACCACCAAATGCCCACTTGT+GGG | - | chr8_2:64076897-64076916 | None:intergenic | 50.0% | |
| TACCACCAAATGCCCACTTG+TGG | - | chr8_2:64076898-64076917 | None:intergenic | 50.0% | |
| ! | GATGAATCTGGCTCATGTCG+AGG | + | chr8_2:64077472-64077491 | Msa1261780:intron | 50.0% |
| !!! | GATCATACCCTTTTGGAGCG+TGG | + | chr8_2:64078160-64078179 | Msa1261780:intron | 50.0% |
| GAACACACCACGCTCCAAAA+GGG | - | chr8_2:64078170-64078189 | None:intergenic | 50.0% | |
| AGAACACACCACGCTCCAAA+AGG | - | chr8_2:64078171-64078190 | None:intergenic | 50.0% | |
| AGCCAAGCAACACTAGGTGA+GGG | + | chr8_2:64078193-64078212 | Msa1261780:intron | 50.0% | |
| ! | ATCCCTCACCTAGTGTTGCT+TGG | - | chr8_2:64078198-64078217 | None:intergenic | 50.0% |
| GTCATACCCTCATTGACACG+TGG | + | chr8_2:64078292-64078311 | Msa1261780:intron | 50.0% | |
| GATAGTGCTCAGTGCTATGC+TGG | - | chr8_2:64078399-64078418 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | - | chr8_2:64078886-64078905 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | + | chr8_2:64078892-64078911 | Msa1261780:CDS | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | + | chr8_2:64078893-64078912 | Msa1261780:CDS | 50.0% |
| GGGTGAGAATAATGCGTGCT+TGG | - | chr8_2:64078924-64078943 | None:intergenic | 50.0% | |
| TGGAGGCAATGCCGTTGTAA+CGG | - | chr8_2:64078945-64078964 | None:intergenic | 50.0% | |
| ATGGCATAGGAGGTTGCTTC+TGG | + | chr8_2:64078994-64079013 | Msa1261780:exon | 50.0% | |
| TGAGGTCCTGAAGCAAATGC+AGG | + | chr8_2:64079023-64079042 | Msa1261780:three_prime_UTR | 50.0% | |
| CGAATGGCCATAACCATCGC+TGG | - | chr8_2:64076512-64076531 | None:intergenic | 55.0% | |
| AGGGTTCTTGACTGGGCGAA+TGG | - | chr8_2:64076528-64076547 | None:intergenic | 55.0% | |
| TCCCACAAGTGGGCATTTGG+TGG | + | chr8_2:64076893-64076912 | Msa1261780:intron | 55.0% | |
| GTCGAGGATGATGTGCTCGA+TGG | + | chr8_2:64077488-64077507 | Msa1261780:intron | 55.0% | |
| TGTCAGGGTCTATGATCCGG+TGG | + | chr8_2:64077544-64077563 | Msa1261780:intron | 55.0% | |
| !! | CAGTGTCTCGGGTTGAGGAA+GGG | + | chr8_2:64077584-64077603 | Msa1261780:intron | 55.0% |
| !! | AGTGTCTCGGGTTGAGGAAG+GGG | + | chr8_2:64077585-64077604 | Msa1261780:intron | 55.0% |
| AACAGCACGAAACGCGACGA+CGG | - | chr8_2:64077892-64077911 | None:intergenic | 55.0% | |
| CAGCCAAGCAACACTAGGTG+AGG | + | chr8_2:64078192-64078211 | Msa1261780:intron | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | - | chr8_2:64078944-64078963 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | + | chr8_2:64078950-64078969 | Msa1261780:CDS | 55.0% | |
| ! | GGTTGCTTCTGGCTGTGTTG+AGG | + | chr8_2:64079005-64079024 | Msa1261780:three_prime_UTR | 55.0% |
| GTGTGTGACCCTTGCCATGC+TGG | + | chr8_2:64076569-64076588 | Msa1261780:CDS | 60.0% | |
| ! | TGAGCCAGTGTCTCGGGTTG+AGG | + | chr8_2:64077579-64077598 | Msa1261780:intron | 60.0% |
| CCTTCCTCAACCCGAGACAC+TGG | - | chr8_2:64077586-64077605 | None:intergenic | 60.0% | |
| !! | CCAGTGTCTCGGGTTGAGGA+AGG | + | chr8_2:64077583-64077602 | Msa1261780:intron | 60.0% |
| !! | TCGGGTTGAGGAAGGGGTCT+AGG | + | chr8_2:64077591-64077610 | Msa1261780:intron | 60.0% |
| ! | CGGGTTGAGGAAGGGGTCTA+GGG | + | chr8_2:64077592-64077611 | Msa1261780:intron | 60.0% |
| AGGCACAACGGCGTGGCTTA+TGG | - | chr8_2:64077646-64077665 | None:intergenic | 60.0% | |
| ACAGCACGAAACGCGACGAC+GGG | - | chr8_2:64077891-64077910 | None:intergenic | 60.0% | |
| ACTGTCGAGGCACAACGGCG+TGG | - | chr8_2:64077653-64077672 | None:intergenic | 65.0% | |
| ATGCGTGCTTGGTCACGCCC+AGG | - | chr8_2:64078913-64078932 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 64076467 | 64079063 | 64076467 | ID=Msa1261780;Name=Msa1261780 |
| chr8_2 | mRNA | 64076467 | 64079063 | 64076467 | ID=Msa1261780-mRNA-1;Parent=Msa1261780;Name=Msa1261780-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.5|0.4|1|1|1|5|61|179 |
| chr8_2 | exon | 64076467 | 64076623 | 64076467 | ID=Msa1261780-mRNA-1:exon:20719;Parent=Msa1261780-mRNA-1 |
| chr8_2 | exon | 64077011 | 64077045 | 64077011 | ID=Msa1261780-mRNA-1:exon:20720;Parent=Msa1261780-mRNA-1 |
| chr8_2 | exon | 64077672 | 64077731 | 64077672 | ID=Msa1261780-mRNA-1:exon:20721;Parent=Msa1261780-mRNA-1 |
| chr8_2 | exon | 64077858 | 64077944 | 64077858 | ID=Msa1261780-mRNA-1:exon:20722;Parent=Msa1261780-mRNA-1 |
| chr8_2 | exon | 64078802 | 64079063 | 64078802 | ID=Msa1261780-mRNA-1:exon:20723;Parent=Msa1261780-mRNA-1 |
| chr8_2 | CDS | 64076467 | 64076623 | 64076467 | ID=Msa1261780-mRNA-1:cds;Parent=Msa1261780-mRNA-1 |
| chr8_2 | CDS | 64077011 | 64077045 | 64077011 | ID=Msa1261780-mRNA-1:cds;Parent=Msa1261780-mRNA-1 |
| chr8_2 | CDS | 64077672 | 64077731 | 64077672 | ID=Msa1261780-mRNA-1:cds;Parent=Msa1261780-mRNA-1 |
| chr8_2 | CDS | 64077858 | 64077944 | 64077858 | ID=Msa1261780-mRNA-1:cds;Parent=Msa1261780-mRNA-1 |
| chr8_2 | CDS | 64078802 | 64079002 | 64078802 | ID=Msa1261780-mRNA-1:cds;Parent=Msa1261780-mRNA-1 |
| chr8_2 | three_prime_UTR | 64079003 | 64079063 | 64079003 | ID=Msa1261780-mRNA-1:three_prime_utr;Parent=Msa1261780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
