Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422720 | sp|Q9LX15|DFC_ARATH | 33.540 | 161 | 83 | 3 | 3 | 163 | 4 | 140 | 3.85e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422720 | B7FN25 | 71.341 | 164 | 24 | 2 | 1 | 164 | 1 | 141 | 4.80e-73 | 226 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1359750 | Msa1422720 | 0.932857 | 4.532824e-95 | -8.615850e-47 |
| Msa1261780 | Msa1422720 | 0.950465 | 1.558121e-108 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422720 | MtrunA17_Chr3g0115561 | 71.341 | 164 | 24 | 2 | 1 | 164 | 1 | 141 | 9.24e-77 | 226 |
| Msa1422720 | MtrunA17_Chr3g0124301 | 32.847 | 137 | 68 | 3 | 28 | 163 | 25 | 138 | 3.84e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422720 | AT4G08685.1 | 39.752 | 161 | 74 | 2 | 3 | 163 | 2 | 139 | 3.94e-35 | 120 |
| Msa1422720 | AT1G78040.1 | 32.317 | 164 | 84 | 4 | 3 | 162 | 2 | 142 | 2.75e-20 | 82.8 |
| Msa1422720 | AT1G78040.3 | 32.317 | 164 | 84 | 4 | 3 | 162 | 2 | 142 | 2.75e-20 | 82.8 |
| Msa1422720 | AT1G78040.2 | 32.317 | 164 | 84 | 4 | 3 | 162 | 2 | 142 | 2.75e-20 | 82.8 |
| Msa1422720 | AT5G10130.1 | 33.540 | 161 | 83 | 3 | 3 | 163 | 4 | 140 | 3.91e-19 | 79.7 |
Find 48 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGATCTGAGAGTAAAA+AGG | 0.219650 | tig0025427:+70606 | None:intergenic |
| CCAATTCCTGCATTTGCTTC+AGG | 0.267252 | tig0025427:+68209 | None:intergenic |
| CAAGAACCCTTTCTGCTTGA+AGG | 0.359097 | tig0025427:-70698 | Msa1422720:CDS |
| AGTTTCTCCGATTCTTCTTA+AGG | 0.360641 | tig0025427:-69527 | Msa1422720:intron |
| ATGGCATAGGAGGTTGCTTC+TGG | 0.397308 | tig0025427:-68244 | Msa1422720:exon |
| CCTGAAGCAAATGCAGGAAT+TGG | 0.399028 | tig0025427:-68209 | Msa1422720:three_prime_UTR |
| TCCGCTATCACTCACATTGC+TGG | 0.409222 | tig0025427:-70634 | Msa1422720:CDS |
| TGTTCTTCCAGCGATGGTTA+TGG | 0.427430 | tig0025427:-70734 | Msa1422720:CDS |
| TTGTGCCTCGACAGTTTGTT+TGG | 0.427493 | tig0025427:-69579 | Msa1422720:intron |
| GAGAAACTACATGCAGAATC+AGG | 0.427554 | tig0025427:+69542 | None:intergenic |
| AAGCAGAAAGGGTTCTTGAC+TGG | 0.430777 | tig0025427:+70703 | None:intergenic |
| GGAGGCAATGCCGTTGTAAC+GGG | 0.439821 | tig0025427:+68297 | None:intergenic |
| AGTTGTAGCGAAAGAGCACC+TGG | 0.442879 | tig0025427:-68346 | Msa1422720:CDS |
| GTGTGTGACCCTTGCCATGC+TGG | 0.443508 | tig0025427:-70667 | Msa1422720:CDS |
| AGCATTGGCAAACCTGTCAT+TGG | 0.466304 | tig0025427:+68276 | None:intergenic |
| ATATACAATCTATGTGGATC+AGG | 0.471477 | tig0025427:-68419 | Msa1422720:CDS |
| AGCAGAAAGGGTTCTTGACT+GGG | 0.474871 | tig0025427:+70704 | None:intergenic |
| CACGACCCTTCAAGCAGAAA+GGG | 0.481464 | tig0025427:+70692 | None:intergenic |
| TTCTTGTAGTGTGATGCAAC+TGG | 0.485025 | tig0025427:-68445 | Msa1422720:intron |
| ACACGAACCTTAAGAAGAAT+CGG | 0.490318 | tig0025427:+69520 | None:intergenic |
| AAGAACCCTTTCTGCTTGAA+GGG | 0.515228 | tig0025427:-70697 | Msa1422720:CDS |
| TGGAGGCAATGCCGTTGTAA+CGG | 0.522858 | tig0025427:+68296 | None:intergenic |
| GGTTGCTTCTGGCTGTGTTG+AGG | 0.532355 | tig0025427:-68233 | Msa1422720:three_prime_UTR |
| ACGGCATTGCCTCCAATGAC+AGG | 0.539090 | tig0025427:-68288 | Msa1422720:CDS |
| ACACGACCCTTCAAGCAGAA+AGG | 0.544506 | tig0025427:+70691 | None:intergenic |
| CGAATGGCCATAACCATCGC+TGG | 0.546740 | tig0025427:+70727 | None:intergenic |
| TGCCAATGCTATGTTGTACA+TGG | 0.548007 | tig0025427:-68263 | Msa1422720:CDS |
| ATTATCAAGAAGCTCTGCTA+TGG | 0.556386 | tig0025427:+70225 | None:intergenic |
| ATGCGTGCTTGGTCACGCCC+AGG | 0.558603 | tig0025427:+68328 | None:intergenic |
| AACTACATGCAGAATCAGGA+TGG | 0.561827 | tig0025427:+69546 | None:intergenic |
| ATTGGCAAACCTGTCATTGG+AGG | 0.565263 | tig0025427:+68279 | None:intergenic |
| AGGGTTCTTGACTGGGCGAA+TGG | 0.567210 | tig0025427:+70711 | None:intergenic |
| GTTTCATAACCAGCATGGCA+AGG | 0.568972 | tig0025427:+70658 | None:intergenic |
| GGGTGAGAATAATGCGTGCT+TGG | 0.569887 | tig0025427:+68317 | None:intergenic |
| ATTATTCTCACCCGTTACAA+CGG | 0.576439 | tig0025427:-68307 | Msa1422720:CDS |
| TGCCATGTACAACATAGCAT+TGG | 0.581264 | tig0025427:+68261 | None:intergenic |
| ACCAGCAATGTGAGTGATAG+CGG | 0.586238 | tig0025427:+70633 | None:intergenic |
| TGAGGTCCTGAAGCAAATGC+AGG | 0.589688 | tig0025427:-68215 | Msa1422720:three_prime_UTR |
| TTTGTGTGTTCTTCCAGCGA+TGG | 0.596076 | tig0025427:-70740 | Msa1422720:CDS |
| TGCTATGTTGTACATGGCAT+AGG | 0.596188 | tig0025427:-68257 | Msa1422720:exon |
| TGGAGAATATACAATCTATG+TGG | 0.605358 | tig0025427:-68425 | Msa1422720:CDS |
| TCTTGATAATGTTGTTGATG+AGG | 0.614835 | tig0025427:-70212 | Msa1422720:intron |
| CTTTCGCTACAACTACGCTC+AGG | 0.623193 | tig0025427:+68355 | None:intergenic |
| TTTCATAACCAGCATGGCAA+GGG | 0.624092 | tig0025427:+70659 | None:intergenic |
| CGGAAGTTTCATAACCAGCA+TGG | 0.624332 | tig0025427:+70653 | None:intergenic |
| TATGTTGTACATGGCATAGG+AGG | 0.654261 | tig0025427:-68254 | Msa1422720:exon |
| ACTACATGCAGAATCAGGAT+GGG | 0.655460 | tig0025427:+69547 | None:intergenic |
| GTTGTAGCGAAAGAGCACCT+GGG | 0.714138 | tig0025427:-68345 | Msa1422720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTAAATTCTTTAATTTT+TGG | - | tig0025427:68452-68471 | Msa1422720:intron | 10.0% |
| !!! | AATTCTTTAATTTTTGGAAA+TGG | - | tig0025427:68458-68477 | Msa1422720:intron | 15.0% |
| !!! | TTTCTCTTTTTTTATTCAAA+AGG | - | tig0025427:69805-69824 | Msa1422720:intron | 15.0% |
| !! | ATATATGATGTATATGAAAT+TGG | - | tig0025427:70190-70209 | Msa1422720:intron | 15.0% |
| !! | TTATATATATCCTTTATCTT+TGG | + | tig0025427:70276-70295 | None:intergenic | 15.0% |
| !! | ATAGTGAAATTAAACCAAAA+GGG | + | tig0025427:68427-68446 | None:intergenic | 20.0% |
| !! | AATAGTGAAATTAAACCAAA+AGG | + | tig0025427:68428-68447 | None:intergenic | 20.0% |
| !! | ATCTATTGTTTCAAATAATC+TGG | + | tig0025427:68536-68555 | None:intergenic | 20.0% |
| !! | GTAATTGTGAGATAAAAATA+TGG | - | tig0025427:68829-68848 | Msa1422720:intron | 20.0% |
| !! | TAAAAAAAAACACCAATTTG+AGG | + | tig0025427:69092-69111 | None:intergenic | 20.0% |
| !! | ATTCATTTGAATCTTTGTTA+TGG | - | tig0025427:69684-69703 | Msa1422720:intron | 20.0% |
| !! | TTGTTATGGTATAGAAAAAA+CGG | - | tig0025427:69698-69717 | Msa1422720:intron | 20.0% |
| !!! | TATTTCTTACATCAACTTTT+TGG | - | tig0025427:70226-70245 | Msa1422720:CDS | 20.0% |
| !!! | CTTTTTGGAATCAATAAAAA+TGG | - | tig0025427:70241-70260 | Msa1422720:intron | 20.0% |
| !! | GATAAAGGATATATATAACT+TGG | - | tig0025427:70278-70297 | Msa1422720:intron | 20.0% |
| ! | TCGAATGAAAAACTTAAACT+TGG | + | tig0025427:68395-68414 | None:intergenic | 25.0% |
| !!! | GCTTTAGATTTTAGAGTTTA+TGG | - | tig0025427:68502-68521 | Msa1422720:intron | 25.0% |
| ! | TATGTCTATATATGAAAGTC+TGG | - | tig0025427:68807-68826 | Msa1422720:intron | 25.0% |
| ! | ATCTCAAGGTTATACATAAA+TGG | + | tig0025427:68953-68972 | None:intergenic | 25.0% |
| !!! | TGTATACCGATTTTGAAATA+TGG | - | tig0025427:69001-69020 | Msa1422720:intron | 25.0% |
| ! | AACACTCCATATTTCAAAAT+CGG | + | tig0025427:69010-69029 | None:intergenic | 25.0% |
| ! | CGAAAAATAAGAATGCAAAA+CGG | + | tig0025427:69478-69497 | None:intergenic | 25.0% |
| ! | TTACCTTTATAAAGTGAAGT+AGG | + | tig0025427:69659-69678 | None:intergenic | 25.0% |
| !!! | CACATAATGCTTTTTGATTT+TGG | - | tig0025427:69831-69850 | Msa1422720:intron | 25.0% |
| !! | TGCATTTTTCTGTGAAATTT+TGG | - | tig0025427:69860-69879 | Msa1422720:intron | 25.0% |
| ! | ATTTGGTAAACCATATAGTT+TGG | - | tig0025427:69959-69978 | Msa1422720:intron | 25.0% |
| ! | TTAAGAAACACCAAACTATA+TGG | + | tig0025427:69972-69991 | None:intergenic | 25.0% |
| !!! | TTGACAACTACTTTTTAGAA+TGG | + | tig0025427:70082-70101 | None:intergenic | 25.0% |
| ! | TCAAATTAATTAACTCGTAC+TGG | - | tig0025427:70145-70164 | Msa1422720:intron | 25.0% |
| ! | TGTATATGAAATTGGAAGTT+TGG | - | tig0025427:70198-70217 | Msa1422720:intron | 25.0% |
| !! | GGAATCAATAAAAATGGTTT+TGG | - | tig0025427:70247-70266 | Msa1422720:intron | 25.0% |
| !! | ACACTTTTGCTTATGATTAT+AGG | - | tig0025427:70323-70342 | Msa1422720:intron | 25.0% |
| ! | TGCTTATGTCTTAACAAATT+AGG | - | tig0025427:70360-70379 | Msa1422720:intron | 25.0% |
| !!! | AAGCTTTGAGTTGATTTATT+TGG | - | tig0025427:70452-70471 | Msa1422720:intron | 25.0% |
| !!! | GATTTATTTGGTGATGAAAT+TGG | - | tig0025427:70464-70483 | Msa1422720:intron | 25.0% |
| AAGAGATCTGAGAGTAAAAA+GGG | + | tig0025427:68362-68381 | None:intergenic | 30.0% | |
| AAAGAGATCTGAGAGTAAAA+AGG | + | tig0025427:68363-68382 | None:intergenic | 30.0% | |
| !! | TCTTGATAATGTTGTTGATG+AGG | - | tig0025427:68754-68773 | Msa1422720:intron | 30.0% |
| AATCAAACAACAGCTTACAA+GGG | + | tig0025427:68863-68882 | None:intergenic | 30.0% | |
| AAATCAAACAACAGCTTACA+AGG | + | tig0025427:68864-68883 | None:intergenic | 30.0% | |
| TAACCTTGAGATTATCATGA+TGG | - | tig0025427:68961-68980 | Msa1422720:intron | 30.0% | |
| TTTCCATCATGATAATCTCA+AGG | + | tig0025427:68967-68986 | None:intergenic | 30.0% | |
| ! | ACTTGTTGAATACCTCAAAT+TGG | - | tig0025427:69077-69096 | Msa1422720:intron | 30.0% |
| TTGTGAATTTGTGATGAATC+TGG | - | tig0025427:69189-69208 | Msa1422720:intron | 30.0% | |
| !!! | TTGCATTCTTATTTTTCGTG+TGG | - | tig0025427:69480-69499 | Msa1422720:intron | 30.0% |
| ! | AGATTTACGTTCTCAGTTTT+GGG | - | tig0025427:69586-69605 | Msa1422720:intron | 30.0% |
| TGTCCTACTTCACTTTATAA+AGG | - | tig0025427:69653-69672 | Msa1422720:intron | 30.0% | |
| AAGAAGATTTCTGTTGAATC+TGG | - | tig0025427:69740-69759 | Msa1422720:intron | 30.0% | |
| ! | TTTGGATTGTTTGCTAAGAT+TGG | - | tig0025427:69763-69782 | Msa1422720:intron | 30.0% |
| ACTATATGGTTTACCAAATG+AGG | + | tig0025427:69958-69977 | None:intergenic | 30.0% | |
| CAACAAAAAATGTAAAGGGA+AGG | + | tig0025427:70398-70417 | None:intergenic | 30.0% | |
| ACGGCAACAAAAAATGTAAA+GGG | + | tig0025427:70402-70421 | None:intergenic | 30.0% | |
| TACGGCAACAAAAAATGTAA+AGG | + | tig0025427:70403-70422 | None:intergenic | 30.0% | |
| ! | ATTGGTGCTTATAAGCTTAA+AGG | - | tig0025427:70482-70501 | Msa1422720:intron | 30.0% |
| TGGAGAATATACAATCTATG+TGG | - | tig0025427:70541-70560 | Msa1422720:intron | 30.0% | |
| ATATACAATCTATGTGGATC+AGG | - | tig0025427:70547-70566 | Msa1422720:intron | 30.0% | |
| AGAGATCTGAGAGTAAAAAG+GGG | + | tig0025427:68361-68380 | None:intergenic | 35.0% | |
| !! | TTCGAATTTGTTCACCCTTT+TGG | - | tig0025427:68410-68429 | Msa1422720:CDS | 35.0% |
| CATTTGAGTGAAGAAACATG+GGG | + | tig0025427:68598-68617 | None:intergenic | 35.0% | |
| GCATTTGAGTGAAGAAACAT+GGG | + | tig0025427:68599-68618 | None:intergenic | 35.0% | |
| TGCATTTGAGTGAAGAAACA+TGG | + | tig0025427:68600-68619 | None:intergenic | 35.0% | |
| CAGACTTCTTTATGACTACT+TGG | - | tig0025427:68671-68690 | Msa1422720:intron | 35.0% | |
| ATTATCAAGAAGCTCTGCTA+TGG | + | tig0025427:68744-68763 | None:intergenic | 35.0% | |
| ! | GATGAGGTGATTTTTCATGT+TGG | - | tig0025427:68770-68789 | Msa1422720:intron | 35.0% |
| CTCATACAAAAATACTCCAC+CGG | + | tig0025427:69292-69311 | None:intergenic | 35.0% | |
| AGTTTCTCCGATTCTTCTTA+AGG | - | tig0025427:69439-69458 | Msa1422720:intron | 35.0% | |
| ACACGAACCTTAAGAAGAAT+CGG | + | tig0025427:69449-69468 | None:intergenic | 35.0% | |
| ! | CAGATTTACGTTCTCAGTTT+TGG | - | tig0025427:69585-69604 | Msa1422720:intron | 35.0% |
| GATTTCTGTTGAATCTGGTT+TGG | - | tig0025427:69745-69764 | Msa1422720:intron | 35.0% | |
| ! | GGTTTTTGATCATACCCTTT+TGG | - | tig0025427:69881-69900 | Msa1422720:intron | 35.0% |
| TATAAACCACGTGTCAATGA+GGG | + | tig0025427:70029-70048 | None:intergenic | 35.0% | |
| ATATAAACCACGTGTCAATG+AGG | + | tig0025427:70030-70049 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTGTCCAAAGATAA+AGG | - | tig0025427:70263-70282 | Msa1422720:intron | 35.0% |
| TTGGATAGTTTCAATGACGT+GGG | - | tig0025427:70297-70316 | Msa1422720:intron | 35.0% | |
| ! | GACAACGGAACACAATTTTA+CGG | + | tig0025427:70421-70440 | None:intergenic | 35.0% |
| ATTATTCTCACCCGTTACAA+CGG | - | tig0025427:70659-70678 | Msa1422720:CDS | 35.0% | |
| AAGAACCCTTTCTGCTTGAA+GGG | - | tig0025427:68269-68288 | Msa1422720:CDS | 40.0% | |
| TTTCATAACCAGCATGGCAA+GGG | + | tig0025427:68310-68329 | None:intergenic | 40.0% | |
| AAATGCAACTTCCCACAAGT+GGG | - | tig0025427:68613-68632 | Msa1422720:intron | 40.0% | |
| TGGAGTAGCTTAAGCAAACA+AGG | - | tig0025427:69237-69256 | Msa1422720:intron | 40.0% | |
| GGAGTAGCTTAAGCAAACAA+GGG | - | tig0025427:69238-69257 | Msa1422720:intron | 40.0% | |
| GAGTAGCTTAAGCAAACAAG+GGG | - | tig0025427:69239-69258 | Msa1422720:intron | 40.0% | |
| AGGGGAGAGAATTATATGTC+AGG | - | tig0025427:69257-69276 | Msa1422720:intron | 40.0% | |
| GGGGAGAGAATTATATGTCA+GGG | - | tig0025427:69258-69277 | Msa1422720:intron | 40.0% | |
| ATATGTCAGGGTCTATGATC+CGG | - | tig0025427:69270-69289 | Msa1422720:intron | 40.0% | |
| ! | TTTTGTATGAGCCAGTGTCT+CGG | - | tig0025427:69301-69320 | Msa1422720:intron | 40.0% |
| TTCTTCCAAACAAACTGTCG+AGG | + | tig0025427:69395-69414 | None:intergenic | 40.0% | |
| ACTACATGCAGAATCAGGAT+GGG | + | tig0025427:69422-69441 | None:intergenic | 40.0% | |
| AACTACATGCAGAATCAGGA+TGG | + | tig0025427:69423-69442 | None:intergenic | 40.0% | |
| GAGAAACTACATGCAGAATC+AGG | + | tig0025427:69427-69446 | None:intergenic | 40.0% | |
| !!! | GTTCTCAGTTTTGGGCAATT+TGG | - | tig0025427:69594-69613 | Msa1422720:intron | 40.0% |
| CTTGGATAGTTTCAATGACG+TGG | - | tig0025427:70296-70315 | Msa1422720:intron | 40.0% | |
| GCTTATAAGCACATCGACAA+CGG | + | tig0025427:70436-70455 | None:intergenic | 40.0% | |
| TTCTTGTAGTGTGATGCAAC+TGG | - | tig0025427:70521-70540 | Msa1422720:intron | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | - | tig0025427:70703-70722 | Msa1422720:CDS | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | + | tig0025427:70708-70727 | None:intergenic | 40.0% | |
| TGCTATGTTGTACATGGCAT+AGG | - | tig0025427:70709-70728 | Msa1422720:CDS | 40.0% | |
| TATGTTGTACATGGCATAGG+AGG | - | tig0025427:70712-70731 | Msa1422720:CDS | 40.0% | |
| TTTGTGTGTTCTTCCAGCGA+TGG | - | tig0025427:68226-68245 | Msa1422720:three_prime_UTR | 45.0% | |
| TGTTCTTCCAGCGATGGTTA+TGG | - | tig0025427:68232-68251 | Msa1422720:three_prime_UTR | 45.0% | |
| AGCAGAAAGGGTTCTTGACT+GGG | + | tig0025427:68265-68284 | None:intergenic | 45.0% | |
| AAGCAGAAAGGGTTCTTGAC+TGG | + | tig0025427:68266-68285 | None:intergenic | 45.0% | |
| CAAGAACCCTTTCTGCTTGA+AGG | - | tig0025427:68268-68287 | Msa1422720:CDS | 45.0% | |
| GTTTCATAACCAGCATGGCA+AGG | + | tig0025427:68311-68330 | None:intergenic | 45.0% | |
| CGGAAGTTTCATAACCAGCA+TGG | + | tig0025427:68316-68335 | None:intergenic | 45.0% | |
| ACCAGCAATGTGAGTGATAG+CGG | + | tig0025427:68336-68355 | None:intergenic | 45.0% | |
| CAAATGCAACTTCCCACAAG+TGG | - | tig0025427:68612-68631 | Msa1422720:intron | 45.0% | |
| TTTGTATGAGCCAGTGTCTC+GGG | - | tig0025427:69302-69321 | Msa1422720:intron | 45.0% | |
| AACAAACTGTCGAGGCACAA+CGG | + | tig0025427:69387-69406 | None:intergenic | 45.0% | |
| ! | TTGTGCCTCGACAGTTTGTT+TGG | - | tig0025427:69387-69406 | Msa1422720:intron | 45.0% |
| TTCTTCAGCCAAGCAACACT+AGG | - | tig0025427:69915-69934 | Msa1422720:intron | 45.0% | |
| ACTAGGTGAGGGATAAGCTT+TGG | - | tig0025427:69932-69951 | Msa1422720:intron | 45.0% | |
| ! | GGATAAGCTTTGGCCTCATT+TGG | - | tig0025427:69942-69961 | Msa1422720:intron | 45.0% |
| GATAGTTTCAATGACGTGGG+TGG | - | tig0025427:70300-70319 | Msa1422720:intron | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | + | tig0025427:70690-70709 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | + | tig0025427:70693-70712 | None:intergenic | 45.0% |
| CCAATTCCTGCATTTGCTTC+AGG | + | tig0025427:70760-70779 | None:intergenic | 45.0% | |
| CCTGAAGCAAATGCAGGAAT+TGG | - | tig0025427:70757-70776 | Msa1422720:CDS | 45.0% | |
| CACGACCCTTCAAGCAGAAA+GGG | + | tig0025427:68277-68296 | None:intergenic | 50.0% | |
| ACACGACCCTTCAAGCAGAA+AGG | + | tig0025427:68278-68297 | None:intergenic | 50.0% | |
| TCCGCTATCACTCACATTGC+TGG | - | tig0025427:68332-68351 | Msa1422720:CDS | 50.0% | |
| ACTTCCCACAAGTGGGCATT+TGG | - | tig0025427:68620-68639 | Msa1422720:intron | 50.0% | |
| ACCACCAAATGCCCACTTGT+GGG | + | tig0025427:68627-68646 | None:intergenic | 50.0% | |
| TACCACCAAATGCCCACTTG+TGG | + | tig0025427:68628-68647 | None:intergenic | 50.0% | |
| ! | GATGAATCTGGCTCATGTCG+AGG | - | tig0025427:69201-69220 | Msa1422720:intron | 50.0% |
| !!! | GATCATACCCTTTTGGAGCG+TGG | - | tig0025427:69888-69907 | Msa1422720:intron | 50.0% |
| GAACACACCACGCTCCAAAA+GGG | + | tig0025427:69898-69917 | None:intergenic | 50.0% | |
| AGAACACACCACGCTCCAAA+AGG | + | tig0025427:69899-69918 | None:intergenic | 50.0% | |
| AGCCAAGCAACACTAGGTGA+GGG | - | tig0025427:69921-69940 | Msa1422720:intron | 50.0% | |
| ! | ATCCCTCACCTAGTGTTGCT+TGG | + | tig0025427:69926-69945 | None:intergenic | 50.0% |
| GTCATACCCTCATTGACACG+TGG | - | tig0025427:70020-70039 | Msa1422720:intron | 50.0% | |
| GATAGTGCTCAGTGCTATGC+TGG | + | tig0025427:70127-70146 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | + | tig0025427:70614-70633 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | - | tig0025427:70620-70639 | Msa1422720:CDS | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | - | tig0025427:70621-70640 | Msa1422720:CDS | 50.0% |
| GGGTGAGAATAATGCGTGCT+TGG | + | tig0025427:70652-70671 | None:intergenic | 50.0% | |
| TGGAGGCAATGCCGTTGTAA+CGG | + | tig0025427:70673-70692 | None:intergenic | 50.0% | |
| ATGGCATAGGAGGTTGCTTC+TGG | - | tig0025427:70722-70741 | Msa1422720:CDS | 50.0% | |
| TGAGGTCCTGAAGCAAATGC+AGG | - | tig0025427:70751-70770 | Msa1422720:CDS | 50.0% | |
| CGAATGGCCATAACCATCGC+TGG | + | tig0025427:68242-68261 | None:intergenic | 55.0% | |
| AGGGTTCTTGACTGGGCGAA+TGG | + | tig0025427:68258-68277 | None:intergenic | 55.0% | |
| TCCCACAAGTGGGCATTTGG+TGG | - | tig0025427:68623-68642 | Msa1422720:intron | 55.0% | |
| GTCGAGGATGATGTGCTCGA+TGG | - | tig0025427:69217-69236 | Msa1422720:intron | 55.0% | |
| TGTCAGGGTCTATGATCCGG+TGG | - | tig0025427:69273-69292 | Msa1422720:intron | 55.0% | |
| !! | CAGTGTCTCGGGTTGAGGAA+GGG | - | tig0025427:69313-69332 | Msa1422720:intron | 55.0% |
| !! | AGTGTCTCGGGTTGAGGAAG+GGG | - | tig0025427:69314-69333 | Msa1422720:intron | 55.0% |
| AACAGCACGAAACGCGACGA+CGG | + | tig0025427:69622-69641 | None:intergenic | 55.0% | |
| CAGCCAAGCAACACTAGGTG+AGG | - | tig0025427:69920-69939 | Msa1422720:intron | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | + | tig0025427:70672-70691 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | - | tig0025427:70678-70697 | Msa1422720:CDS | 55.0% | |
| ! | GGTTGCTTCTGGCTGTGTTG+AGG | - | tig0025427:70733-70752 | Msa1422720:CDS | 55.0% |
| GTGTGTGACCCTTGCCATGC+TGG | - | tig0025427:68299-68318 | Msa1422720:CDS | 60.0% | |
| ! | TGAGCCAGTGTCTCGGGTTG+AGG | - | tig0025427:69308-69327 | Msa1422720:intron | 60.0% |
| CCTTCCTCAACCCGAGACAC+TGG | + | tig0025427:69315-69334 | None:intergenic | 60.0% | |
| !! | CCAGTGTCTCGGGTTGAGGA+AGG | - | tig0025427:69312-69331 | Msa1422720:intron | 60.0% |
| !! | TCGGGTTGAGGAAGGGGTCT+AGG | - | tig0025427:69320-69339 | Msa1422720:intron | 60.0% |
| ! | CGGGTTGAGGAAGGGGTCTA+GGG | - | tig0025427:69321-69340 | Msa1422720:intron | 60.0% |
| AGGCACAACGGCGTGGCTTA+TGG | + | tig0025427:69375-69394 | None:intergenic | 60.0% | |
| ACAGCACGAAACGCGACGAC+GGG | + | tig0025427:69621-69640 | None:intergenic | 60.0% | |
| ACTGTCGAGGCACAACGGCG+TGG | + | tig0025427:69382-69401 | None:intergenic | 65.0% | |
| ATGCGTGCTTGGTCACGCCC+AGG | + | tig0025427:70641-70660 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025427 | gene | 68197 | 70791 | 68197 | ID=Msa1422720;Name=Msa1422720 |
| tig0025427 | mRNA | 68197 | 70791 | 68197 | ID=Msa1422720-mRNA-1;Parent=Msa1422720;Name=Msa1422720-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0.25|1|0.33|0.75|4|61|164 |
| tig0025427 | exon | 68197 | 68458 | 68197 | ID=Msa1422720-mRNA-1:exon:2735;Parent=Msa1422720-mRNA-1 |
| tig0025427 | exon | 69528 | 69587 | 69528 | ID=Msa1422720-mRNA-1:exon:2734;Parent=Msa1422720-mRNA-1 |
| tig0025427 | exon | 70213 | 70247 | 70213 | ID=Msa1422720-mRNA-1:exon:2733;Parent=Msa1422720-mRNA-1 |
| tig0025427 | exon | 70593 | 70791 | 70593 | ID=Msa1422720-mRNA-1:exon:2732;Parent=Msa1422720-mRNA-1 |
| tig0025427 | CDS | 70593 | 70791 | 70593 | ID=Msa1422720-mRNA-1:cds;Parent=Msa1422720-mRNA-1 |
| tig0025427 | CDS | 70213 | 70247 | 70213 | ID=Msa1422720-mRNA-1:cds;Parent=Msa1422720-mRNA-1 |
| tig0025427 | CDS | 69528 | 69587 | 69528 | ID=Msa1422720-mRNA-1:cds;Parent=Msa1422720-mRNA-1 |
| tig0025427 | CDS | 68258 | 68458 | 68258 | ID=Msa1422720-mRNA-1:cds;Parent=Msa1422720-mRNA-1 |
| tig0025427 | three_prime_UTR | 68197 | 68257 | 68197 | ID=Msa1422720-mRNA-1:three_prime_utr;Parent=Msa1422720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
