AlfalfaGEDB | Msa1361340

M. sativa cultivar zhongmu-4 / Msa1361340

KEGG: K19199
GO: -
PFAM: PF09273.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361340	AES92327.2	89.172	628	45	2	8	612	12	639	0.0	1140

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361340	G7JVG8	89.172	628	45	2	8	612	12	639	0.0	1140

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TFs/TRs:

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Gene ID	Type	Classification
Msa1361340	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0585340	Msa1361340	0.801290	9.654190e-49	-8.615850e-47
Msa0945690	Msa1361340	0.951545	1.628673e-109	-8.615850e-47
Msa1358890	Msa1361340	0.949098	2.526109e-107	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361340	MtrunA17_Chr4g0072481	97.075	547	16	0	66	612	1	547	0.0	1104
Msa1361340	MtrunA17_Chr3g0120751	23.273	275	203	7	207	477	63	333	5.19e-18	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361340	AT2G18850.1	52.060	534	250	4	70	602	10	538	0.0	557
Msa1361340	AT2G18850.2	51.685	534	245	5	70	602	10	531	0.0	550
Msa1361340	AT3G07670.1	23.629	474	311	18	147	585	15	472	1.40e-20	95.9
Msa1361340	AT3G07670.2	24.528	318	200	11	299	585	26	334	2.37e-15	78.6

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Find 135 sgRNAs with CRISPR-Local

Find 764 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCATGGTGTAAAGAC+AGG	0.525288	tig0017492:+6046	Msa1361340:CDS
AAAGTCTTTGTTTGCATCAC+AGG	0.436089	tig0017492:-13544	None:intergenic
AAATGTAATAAAATGAGAGC+TGG	0.529710	tig0017492:-13177	None:intergenic
AAGAATCATACAGTTAAACG+AGG	0.733021	tig0017492:+5517	Msa1361340:CDS
AAGAATGCTGCTTAAGCTAT+GGG	0.536764	tig0017492:+13147	Msa1361340:CDS
AAGATGATCCAATAATGGAG+AGG	0.665042	tig0017492:-13506	None:intergenic
AAGCTCCTCAGAAATGATAA+TGG	0.442652	tig0017492:-6287	None:intergenic
AATCACAGCATATTCTATTA+TGG	0.363717	tig0017492:+13478	Msa1361340:CDS
AATTTCAATGAATTTGTTGA+AGG	0.427682	tig0017492:-13095	None:intergenic
ACAACTAGAAAGTGATTTGT+CGG	0.544339	tig0017492:-5879	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATATCATGTACAAACCCT+AGG	-	tig0017492:4075-4094	None:intergenic	30.0%
ATCAGTAATATCAAGGTATG+AGG	-	tig0017492:4278-4297	None:intergenic	30.0%
TCCTTTCTTTGATGAAAAGA+AGG	+	tig0017492:4491-4510	Msa1361340:CDS	30.0%
TCTGTAAAGGAAAGTTCTAT+CGG	+	tig0017492:4693-4712	Msa1361340:intron	30.0%
TTGATCTACTCTTCTTACAA+CGG	-	tig0017492:4957-4976	None:intergenic	30.0%
TGTAAGAAGAGTAGATCAAA+TGG	+	tig0017492:4958-4977	Msa1361340:intron	30.0%
AACCATTCGAAAAGATTTAG+AGG	+	tig0017492:5033-5052	Msa1361340:intron	30.0%
TGAGAAAAATTAAGCAGCTA+AGG	+	tig0017492:5206-5225	Msa1361340:intron	30.0%
GAGAAAAATTAAGCAGCTAA+GGG	+	tig0017492:5207-5226	Msa1361340:intron	30.0%
TATATTGCCTTGAATAACGT+TGG	-	tig0017492:5245-5264	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0017492	gene	3668	14901	3668	ID=Msa1361340;Name=Msa1361340
tig0017492	mRNA	3668	14901	3668	ID=Msa1361340-mRNA-1;Parent=Msa1361340;Name=Msa1361340-mRNA-1;_AED=0.13;_eAED=0.14;_QI=0\|0.83\|0.84\|0.92\|0.83\|0.84\|13\|351\|612
tig0017492	exon	3668	3832	3668	ID=Msa1361340-mRNA-1:exon:12367;Parent=Msa1361340-mRNA-1
tig0017492	exon	4310	4337	4310	ID=Msa1361340-mRNA-1:exon:12368;Parent=Msa1361340-mRNA-1
tig0017492	exon	4439	4512	4439	ID=Msa1361340-mRNA-1:exon:12369;Parent=Msa1361340-mRNA-1
tig0017492	exon	5410	5538	5410	ID=Msa1361340-mRNA-1:exon:12370;Parent=Msa1361340-mRNA-1
tig0017492	exon	5788	6082	5788	ID=Msa1361340-mRNA-1:exon:12371;Parent=Msa1361340-mRNA-1
tig0017492	exon	6209	6327	6209	ID=Msa1361340-mRNA-1:exon:12372;Parent=Msa1361340-mRNA-1
tig0017492	exon	6905	7037	6905	ID=Msa1361340-mRNA-1:exon:12373;Parent=Msa1361340-mRNA-1
tig0017492	exon	9468	9544	9468	ID=Msa1361340-mRNA-1:exon:12374;Parent=Msa1361340-mRNA-1
tig0017492	exon	12367	12564	12367	ID=Msa1361340-mRNA-1:exon:12375;Parent=Msa1361340-mRNA-1
tig0017492	exon	13059	13248	13059	ID=Msa1361340-mRNA-1:exon:12376;Parent=Msa1361340-mRNA-1
tig0017492	exon	13389	13567	13389	ID=Msa1361340-mRNA-1:exon:12377;Parent=Msa1361340-mRNA-1
tig0017492	exon	13902	14002	13902	ID=Msa1361340-mRNA-1:exon:12378;Parent=Msa1361340-mRNA-1
tig0017492	exon	14400	14901	14400	ID=Msa1361340-mRNA-1:exon:12379;Parent=Msa1361340-mRNA-1
tig0017492	CDS	3668	3832	3668	ID=Msa1361340-mRNA-1:cds;Parent=Msa1361340-mRNA-1
tig0017492	CDS	4310	4337	4310	ID=Msa1361340-mRNA-1:cds;Parent=Msa1361340-mRNA-1
tig0017492	CDS	4439	4512	4439	ID=Msa1361340-mRNA-1:cds;Parent=Msa1361340-mRNA-1
tig0017492	CDS	5410	5538	5410	ID=Msa1361340-mRNA-1:cds;Parent=Msa1361340-mRNA-1
tig0017492	CDS	5788	6082	5788	ID=Msa1361340-mRNA-1:cds;Parent=Msa1361340-mRNA-1
tig0017492	CDS	6209	6327	6209	ID=Msa1361340-mRNA-1:cds;Parent=Msa1361340-mRNA-1
tig0017492	CDS	6905	7037	6905	ID=Msa1361340-mRNA-1:cds;Parent=Msa1361340-mRNA-1
tig0017492	CDS	9468	9544	9468	ID=Msa1361340-mRNA-1:cds;Parent=Msa1361340-mRNA-1
tig0017492	CDS	12367	12564	12367	ID=Msa1361340-mRNA-1:cds;Parent=Msa1361340-mRNA-1
tig0017492	CDS	13059	13248	13059	ID=Msa1361340-mRNA-1:cds;Parent=Msa1361340-mRNA-1
tig0017492	CDS	13389	13567	13389	ID=Msa1361340-mRNA-1:cds;Parent=Msa1361340-mRNA-1
tig0017492	CDS	13902	14002	13902	ID=Msa1361340-mRNA-1:cds;Parent=Msa1361340-mRNA-1
tig0017492	CDS	14400	14550	14400	ID=Msa1361340-mRNA-1:cds;Parent=Msa1361340-mRNA-1
tig0017492	three_prime_UTR	14551	14901	14551	ID=Msa1361340-mRNA-1:three_prime_utr;Parent=Msa1361340-mRNA-1

Gene Sequence

>Msa1361340

ATCTTTAAAGCTCTTAACAAACTACATCATATAACTCTCTTTTGCCGCTCAAACTCTTTCTTACTTCACTCACTTGCGGCTTCAGCTGAGAGCTTCTCTGAACTTTGCTCTATTCGAAGCATCTCTGAAGCAATCGCGACTTCTTCTAGAACCTACCGTGTTCTGCTGGTAATGATGAAGAAATCCTGCTTATCCATGGATAGTGACGAGGAGTGCTCAATTGTTCTTGAGTTATCTGAAAATGATCCTTTCTTTGATGAAAAGAAGAAATTACTACGATGTAAGGGGTTTGGTCCCAAGGAATGGATACATCTCAAGTGCTCCTCAGGACCTTCTTGGATGAATGATATCGTAAAGATCTTACTTCAGATTGCAAGAATCATACAGTTAAACGAGCTGGAACTCTATTTTGCTGAAGACGATGCCTCGGTGGAGTTTTACAGCCCCAGGAATGAGTTGGAGGCTCTCAATTCAATTGTTTCGCTCACCGACAAATCACTTTCTAGTTGTCCACATTTCCATACAAACATCCTGCAAGGGTTACAACAAAAGATTTTTGATTTAATTTCTGATTTTGGGGACCAAAACAATATGAAGGGAGTACTTGAAAAGTACCACAGTTGTGAGAGAGAAGAACACCTGATTGAGTGGGGTAAAAGCCATGGTGTAAAGACAGGATTAAAGATAGCTTATGTTGAAGGAGCAGGCCGGGGAATGATAGCAGGGAAAGATCTAAAAGTTGGAGATACTGCTATAGAGATTCCCGTGTCCATTATCATTTCTGAGGAGCTTGTGCTTGAAACTGATATGTATCGTCTCTTGAAAGAGGTTGATGGCATATCATCTGAGACAATATTGCTGTTATGGAGTATGAAAGAGAAGTACAACTGTGATTCAAAATTCAAAATTTACTTTGACACACTTCCAGAAAAATTTAATACAGGATTGAGTTTTGGGATTGAAGCGATTACAATGCTAGATGGAACCTTGCTGTTTGAAGAGATAATGCAATCAAGACAGCACTTGCATGCTCAGTATGATGAGTTGGTTCCTGCTTTGTGCAATGGTTTTCCTGATATATTTCCTCCAGAGATTTACACTTGGGAGAATTTTTTATGGGCTTGTGAACTTTGGTATTCCAATAGCATGAAGATAATGTATTCAGATGGAAAACTGAGGACATGTTTGATACCTCTTGCTGGCTTTCTTAATCATTCACTGTGCCCACATATTACACACTATGGCAAAGTAGATCCTTCAACAAATTCATTGAAATTTTGTCTATCAAGACCATGCCGATCTGGAGAAGAATGCTGCTTAAGCTATGGGAACTTCTCCAGCTCTCATTTTATTACATTTTATGGTTTCTTACCTCAAGGAGACAACCCGTATGATGTCATTCCTTTAGACATCGATAGTTCTGATGTTGATTCTATTGAGGATAAACCTGTGTCCAAATGGACGACTCACATGGTGCGTGGTACCTGGCTCTCCAACAATCACAGCATATTCTATTATGGTCTTCCCTCTCCATTATTGGATCATCTTCGGAGATCTCGAAGTCCTGTGATGCAAACAAAGACTTTCTTGCAAGGAAACTTGGAAAATGAGCTAGAAGTTCTTGGAGATCTCAAAGACATCTTTGACGACATGATGGACAGTATGGGTGAAGTCGATCTTGATAACAGAGAAAGCTACACCTGGGATGAAAAATTGGCTGTGGATTGTAAAAATCTACAAAGACGAATAGCCCATTCTGTTTCAACTTCTTGCTGTACTGGGATCAACATGTTGAAGAATGAACTGCACAAGTGTTTGGCTGAGGACATTGTAGGTTAA

Protein sequence

>Msa1361340

IFKALNKLHHITLFCRSNSFLLHSLAASAESFSELCSIRSISEAIATSSRTYRVLLVMMKKSCLSMDSDEECSIVLELSENDPFFDEKKKLLRCKGFGPKEWIHLKCSSGPSWMNDIVKILLQIARIIQLNELELYFAEDDASVEFYSPRNELEALNSIVSLTDKSLSSCPHFHTNILQGLQQKIFDLISDFGDQNNMKGVLEKYHSCEREEHLIEWGKSHGVKTGLKIAYVEGAGRGMIAGKDLKVGDTAIEIPVSIIISEELVLETDMYRLLKEVDGISSETILLLWSMKEKYNCDSKFKIYFDTLPEKFNTGLSFGIEAITMLDGTLLFEEIMQSRQHLHAQYDELVPALCNGFPDIFPPEIYTWENFLWACELWYSNSMKIMYSDGKLRTCLIPLAGFLNHSLCPHITHYGKVDPSTNSLKFCLSRPCRSGEECCLSYGNFSSSHFITFYGFLPQGDNPYDVIPLDIDSSDVDSIEDKPVSKWTTHMVRGTWLSNNHSIFYYGLPSPLLDHLRRSRSPVMQTKTFLQGNLENELEVLGDLKDIFDDMMDSMGEVDLDNRESYTWDEKLAVDCKNLQRRIAHSVSTSCCTGINMLKNELHKCLAEDIVG*