AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0585340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585340 MtrunA17_Chr4g0000281 97.412 425 11 0 1 425 1 425 0.0 851
Msa0585340 MtrunA17_Chr8g0391071 39.571 326 163 13 115 424 254 561 2.22e-47 171
Msa0585340 MtrunA17_Chr7g0217181 34.557 327 186 12 122 424 422 744 1.73e-39 150
Msa0585340 MtrunA17_Chr8g0361681 28.963 328 208 7 121 425 511 836 9.37e-30 122
Msa0585340 MtrunA17_Chr5g0417111 30.861 337 177 12 121 425 597 909 1.51e-29 121
Msa0585340 MtrunA17_Chr6g0484451 41.346 208 105 6 115 320 300 492 5.53e-28 115
Msa0585340 MtrunA17_Chr8g0361691 42.045 88 43 2 194 277 11 94 8.42e-16 74.7
Msa0585340 MtrunA17_Chr6g0484461 43.333 90 47 3 337 424 1 88 1.78e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585340 AT3G20260.1 59.729 442 156 10 1 425 1 437 3.43e-156 449
Msa0585340 AT1G73850.2 36.446 332 179 10 115 424 312 633 2.37e-46 169
Msa0585340 AT1G73850.1 36.446 332 179 10 115 424 312 633 2.37e-46 169
Msa0585340 AT5G39785.1 31.024 332 197 5 125 425 276 606 1.59e-37 144
Msa0585340 AT5G39785.3 31.024 332 197 5 125 425 276 606 1.59e-37 144
Msa0585340 AT5G39785.5 31.024 332 197 5 125 425 276 606 1.59e-37 144
Msa0585340 AT5G39785.2 29.762 336 197 6 125 425 276 607 8.01e-36 139
Msa0585340 AT5G39785.4 29.412 357 195 8 125 425 276 631 3.89e-34 135
Msa0585340 AT1G69610.3 28.148 405 218 11 60 425 222 592 1.38e-30 124
Msa0585340 AT1G69610.2 28.109 402 222 11 60 425 267 637 1.64e-30 124
Msa0585340 AT1G69610.1 28.109 402 222 11 60 425 266 636 1.82e-30 124
Msa0585340 AT3G01175.1 27.536 345 182 11 119 424 260 575 1.63e-19 91.3

Find 131 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAACTTCTTCATGCTTT+TGG 0.162837 4_2:-6137396 None:intergenic
GAAAATTCACCTCGTATATT+TGG 0.166047 4_2:-6136403 None:intergenic
TCTTTCTTTCTTTCTTTCAT+TGG 0.180217 4_2:+6132828 Msa0585340:five_prime_UTR
AAATTAAAGAAACATGTTTA+TGG 0.233628 4_2:+6137804 Msa0585340:three_prime_UTR
CTAGAGCGAGCATAAATTTC+AGG 0.248869 4_2:-6136352 None:intergenic
GTGCAGCATCTTAGTGAAAT+TGG 0.249862 4_2:+6135471 Msa0585340:CDS
TGTAATATTTGTGAGTTTCT+AGG 0.255991 4_2:+6137692 Msa0585340:three_prime_UTR
TGTTCACTCTCTCTCTTCAT+AGG 0.265647 4_2:+6132721 Msa0585340:five_prime_UTR
TCTTTATGTTATGAATGTTT+AGG 0.270816 4_2:+6137594 Msa0585340:three_prime_UTR
CAAAGCCTCGCCACCATTGC+TGG 0.272542 4_2:-6135395 None:intergenic
GCAGGAGTTTCAACAATTTC+AGG 0.274624 4_2:+6136279 Msa0585340:CDS
CTTTCTTTCTTTCTTTCATT+GGG 0.276098 4_2:+6132829 Msa0585340:five_prime_UTR
GTAGTATTGGGCTGTGGCTT+AGG 0.278993 4_2:+6135007 Msa0585340:five_prime_UTR
AACTTGATTTATCGAATAAT+AGG 0.282412 4_2:+6137518 Msa0585340:CDS
AATCTAAGCTAAGCTAAGTT+AGG 0.286315 4_2:+6132940 Msa0585340:five_prime_UTR
CACTTTGCCTAAACTACTTC+AGG 0.289828 4_2:+6136378 Msa0585340:CDS
TATTAGCATTAATGTAATAA+TGG 0.297584 4_2:-6132754 None:intergenic
TTCTTGCTCCAGATCTTATC+AGG 0.311925 4_2:+6136623 Msa0585340:CDS
TAGTGTAACGAAGATCATTA+TGG 0.317080 4_2:+6137735 Msa0585340:three_prime_UTR
CTTTATGTTATGAATGTTTA+GGG 0.324903 4_2:+6137595 Msa0585340:three_prime_UTR
TAACTTAGCTTAGCTTAGAT+TGG 0.325718 4_2:-6132938 None:intergenic
TGACTAGAGAACAGCTGTTT+TGG 0.334597 4_2:+6137476 Msa0585340:CDS
TCGAGACATGAATCTTCTTC+AGG 0.336685 4_2:-6135303 None:intergenic
CTTGTGATTTAGTCTATGTT+TGG 0.337252 4_2:+6137780 Msa0585340:three_prime_UTR
AGCTTCTTTGATGTAGATCT+TGG 0.341971 4_2:-6136037 None:intergenic
TCCACATCCCTCCATTCATT+TGG 0.357529 4_2:-6135363 None:intergenic
TCATTATGGATTACTCTTGT+TGG 0.369108 4_2:+6137749 Msa0585340:three_prime_UTR
GGCTTTGATTCCTCAGGCTC+AGG 0.371626 4_2:-6135141 None:intergenic
TCAATTATCCTGATAAGATC+TGG 0.392578 4_2:-6136631 None:intergenic
TCAAGCGTTATCAACCTGTT+TGG 0.398641 4_2:+6136703 Msa0585340:CDS
GCTGATTCTGATTTCCAAAC+AGG 0.399869 4_2:-6136717 None:intergenic
GAGCCTCCTCTTTACCTCAT+TGG 0.400140 4_2:-6135244 None:intergenic
GCTTGAAAATATTCCCTACT+TGG 0.408160 4_2:+6136132 Msa0585340:CDS
GAAGAGGAAGAGGGAGAGAC+AGG 0.409837 4_2:+6135339 Msa0585340:CDS
TTTGGAACCTGAAGTAGTTT+AGG 0.411769 4_2:-6136385 None:intergenic
ATAATCTTCTCTCTTATTCA+AGG 0.416061 4_2:+6133006 Msa0585340:five_prime_UTR
CCTTTCGTTTATTCCTGAAA+AGG 0.417058 4_2:+6136668 Msa0585340:CDS
TAGTATTGGGCTGTGGCTTA+GGG 0.421544 4_2:+6135008 Msa0585340:five_prime_UTR
GATAATACAGTATGAGGAAA+AGG 0.436537 4_2:-6132971 None:intergenic
AGGGGAGGATGAAGAGGAAG+AGG 0.437173 4_2:+6135329 Msa0585340:CDS
GGTCGAGGGCCCTGCTCAAA+AGG 0.439174 4_2:-6136331 None:intergenic
TTGACGCGAAAATCTTATCA+AGG 0.439867 4_2:+6137434 Msa0585340:CDS
GATGAAGATAATACAGTATG+AGG 0.442165 4_2:-6132977 None:intergenic
CTGCGCACTACGGCTGTAAC+AGG 0.442848 4_2:-6136260 None:intergenic
CTTTCGTTTATTCCTGAAAA+GGG 0.442892 4_2:+6136669 Msa0585340:CDS
GTGTTGGGCTTTGATTCCTC+AGG 0.443162 4_2:-6135147 None:intergenic
ATATGAGTTATAAGATATCT+TGG 0.448492 4_2:+6136221 Msa0585340:CDS
AAAGGTGAGGTGGTAAAGCA+TGG 0.463682 4_2:+6135044 Msa0585340:exon
TACTGTATTATCTTCATCAA+TGG 0.469957 4_2:+6132982 Msa0585340:five_prime_UTR
GAATGTTTAGGGAAGGTTTG+TGG 0.470158 4_2:+6137606 Msa0585340:three_prime_UTR
CATCTTAGTGAAATTGGAAA+AGG 0.480151 4_2:+6135477 Msa0585340:CDS
TCCCTACTTGGATATTGAAA+CGG 0.481023 4_2:+6136144 Msa0585340:CDS
AGGAGCTAAGGAAGAAGGGT+TGG 0.486945 4_2:+6137356 Msa0585340:CDS
ATCTAAGCTAAGCTAAGTTA+GGG 0.488915 4_2:+6132941 Msa0585340:five_prime_UTR
GCTCGCCACTCCTCTACAAC+AGG 0.491100 4_2:+6136738 Msa0585340:CDS
GGGGAGGATGAAGAGGAAGA+GGG 0.491674 4_2:+6135330 Msa0585340:CDS
GATTAGCAAGGGAATAGAAT+GGG 0.491816 4_2:-6137559 None:intergenic
GAAGAAGTTCAACTATTGCT+TGG 0.493712 4_2:+6137406 Msa0585340:CDS
AGAAGCTGGCATCTCCCCTT+CGG 0.493948 4_2:+6136053 Msa0585340:CDS
TTATTACCAATGAGGTAAAG+AGG 0.499834 4_2:+6135238 Msa0585340:CDS
CGAGCATAAATTTCAGGTCG+AGG 0.501283 4_2:-6136346 None:intergenic
AGATGTTCAGTCTCATCATC+AGG 0.502631 4_2:-6136103 None:intergenic
TGATCAGGACCACCAGTGTT+GGG 0.502702 4_2:-6135162 None:intergenic
GAGAGACAGGACCAAATGAA+TGG 0.508991 4_2:+6135352 Msa0585340:CDS
TTTGATGTAGATCTTGGAGA+TGG 0.515789 4_2:-6136031 None:intergenic
CTGAAATTTATGCTCGCTCT+AGG 0.518886 4_2:+6136353 Msa0585340:CDS
TCAGGAATAAACGAAAGGTA+AGG 0.521078 4_2:-6136663 None:intergenic
TGAACAGAAACAGAAAGAGT+AGG 0.524466 4_2:-6132704 None:intergenic
GCTTAGCTTAGATTGGAGCT+TGG 0.527021 4_2:-6132931 None:intergenic
TAGGTCAAATATGCTTGACT+TGG 0.527289 4_2:+6136173 Msa0585340:CDS
ACTGAAGGAGCTAAGGAAGA+AGG 0.531349 4_2:+6137351 Msa0585340:CDS
GAAGATTCATGTCTCGAGGA+AGG 0.531829 4_2:+6135309 Msa0585340:CDS
TATCGAATAATAGGTTAGAG+AGG 0.533149 4_2:+6137527 Msa0585340:CDS
AGGCAGAAGGCCAGCAATGG+TGG 0.534428 4_2:+6135385 Msa0585340:CDS
CGAGGAAGGGGAGGATGAAG+AGG 0.537283 4_2:+6135323 Msa0585340:CDS
TGATTAGCAAGGGAATAGAA+TGG 0.538025 4_2:-6137560 None:intergenic
GAACAGAAACAGAAAGAGTA+GGG 0.538194 4_2:-6132703 None:intergenic
AGATTCATGTCTCGAGGAAG+GGG 0.539571 4_2:+6135311 Msa0585340:CDS
CTAAAGACTGTGATTAGCAA+GGG 0.541390 4_2:-6137570 None:intergenic
AAGATCTACATCAAAGAAGC+TGG 0.541693 4_2:+6136039 Msa0585340:CDS
TTTAGGAAATCTCAGAAAGC+AGG 0.542506 4_2:+6135087 Msa0585340:CDS
GACAGGACCAAATGAATGGA+GGG 0.543843 4_2:+6135356 Msa0585340:CDS
GATATTGAAACGGCATATGT+AGG 0.544289 4_2:+6136154 Msa0585340:CDS
CTGATCAGGACCACCAGTGT+TGG 0.545402 4_2:-6135163 None:intergenic
AAAGAATGTTATTCTTTGAT+CGG 0.546997 4_2:+6135442 Msa0585340:CDS
AAGATTCATGTCTCGAGGAA+GGG 0.547261 4_2:+6135310 Msa0585340:CDS
GGATTATGTATGAGTATGAC+AGG 0.548407 4_2:+6137627 Msa0585340:three_prime_UTR
TGCCGTTTCAATATCCAAGT+AGG 0.551085 4_2:-6136146 None:intergenic
GTAGACTGAACCTGTTGTAG+AGG 0.552512 4_2:-6136748 None:intergenic
TGACGCGAAAATCTTATCAA+GGG 0.554727 4_2:+6137435 Msa0585340:CDS
CAAGGGTTCTAAGAATGACT+AGG 0.556783 4_2:+6137452 Msa0585340:CDS
AATTTCAGGTTCTATTGCAA+AGG 0.557900 4_2:+6136293 Msa0585340:CDS
ACCAAATGAATGGAGGGATG+TGG 0.560503 4_2:+6135362 Msa0585340:CDS
GCCGTTTCAATATCCAAGTA+GGG 0.561156 4_2:-6136145 None:intergenic
ATGTTATGAATGTTTAGGGA+AGG 0.562192 4_2:+6137599 Msa0585340:three_prime_UTR
CTGTTACAGCCGTAGTGCGC+AGG 0.568099 4_2:+6136261 Msa0585340:CDS
TTTCAAGGAAAGACACCGAA+GGG 0.568486 4_2:-6136068 None:intergenic
TGGAGGGATGTGGAGGCAGA+AGG 0.569588 4_2:+6135372 Msa0585340:CDS
ATCGAATAATAGGTTAGAGA+GGG 0.574093 4_2:+6137528 Msa0585340:CDS
TGGTGAAACTGAAGGAGCTA+AGG 0.574266 4_2:+6137344 Msa0585340:CDS
TCGTCGTACGCTCAGATCAG+AGG 0.577566 4_2:-6132671 None:intergenic
ACTAAAGACTGTGATTAGCA+AGG 0.583558 4_2:-6137571 None:intergenic
CTGAAGGAGCTAAGGAAGAA+GGG 0.591588 4_2:+6137352 Msa0585340:CDS
TCAAATATGCTTGACTTGGG+AGG 0.593392 4_2:+6136177 Msa0585340:CDS
GAAGGCCAGCAATGGTGGCG+AGG 0.595275 4_2:+6135390 Msa0585340:CDS
GAAATCTCAGAAAGCAGGTG+TGG 0.595844 4_2:+6135092 Msa0585340:CDS
GTTGAAACTCCTGCGCACTA+CGG 0.598745 4_2:-6136270 None:intergenic
CAAGGGAATAGAATGGGGCA+TGG 0.602619 4_2:-6137553 None:intergenic
CGATTCTTGTGCTGATGCTG+AGG 0.602958 4_2:+6135203 Msa0585340:CDS
CAAGGCAGTGCCTGAGCCTG+AGG 0.607834 4_2:+6135131 Msa0585340:CDS
TGAGGTAAAGAGGAGGCTCA+AGG 0.611185 4_2:+6135248 Msa0585340:CDS
TGGAGGCAGAAGGCCAGCAA+TGG 0.611341 4_2:+6135382 Msa0585340:CDS
GAGGAATCAAAGCCCAACAC+TGG 0.613144 4_2:+6135150 Msa0585340:CDS
AGGTCAAATATGCTTGACTT+GGG 0.614670 4_2:+6136174 Msa0585340:CDS
GAGCATAAATTTCAGGTCGA+GGG 0.615669 4_2:-6136345 None:intergenic
AAATGAATGGAGGGATGTGG+AGG 0.617932 4_2:+6135365 Msa0585340:CDS
AGACAGGACCAAATGAATGG+AGG 0.620870 4_2:+6135355 Msa0585340:CDS
TTCATGTCTCGAGGAAGGGG+AGG 0.621507 4_2:+6135314 Msa0585340:CDS
GGTTCAGTCTACTCTTGAGA+AGG 0.623341 4_2:+6136759 Msa0585340:CDS
CTGAACCTGTTGTAGAGGAG+TGG 0.623679 4_2:-6136743 None:intergenic
GAATCAAAGCCCAACACTGG+TGG 0.626423 4_2:+6135153 Msa0585340:CDS
TGAAGAAGATTCATGTCTCG+AGG 0.629329 4_2:+6135305 Msa0585340:CDS
GCAGAAAGTGGTGAAACTGA+AGG 0.636231 4_2:+6137336 Msa0585340:intron
GAGTGAAGTGAAGTGAAGTG+AGG 0.641007 4_2:-6132907 None:intergenic
GAGTATGACAGGGCATAGCA+AGG 0.648243 4_2:+6137638 Msa0585340:three_prime_UTR
GCACTACGGCTGTAACAGGT+AGG 0.666438 4_2:-6136256 None:intergenic
ATTAGCAAGGGAATAGAATG+GGG 0.668816 4_2:-6137558 None:intergenic
TTCAAGGAAAGACACCGAAG+GGG 0.675812 4_2:-6136067 None:intergenic
CTTCAGGTTCCAAATATACG+AGG 0.690819 4_2:+6136394 Msa0585340:CDS
TTACCAATGAGGTAAAGAGG+AGG 0.699801 4_2:+6135241 Msa0585340:CDS
GATTATGTATGAGTATGACA+GGG 0.806351 4_2:+6137628 Msa0585340:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTAAAACATAAAAAAA+TGG - chr4_2:6132798-6132817 None:intergenic 10.0%
!!! AATTAATAATTACTTTTAGA+TGG + chr4_2:6134123-6134142 Msa0585340:intron 10.0%
!! TTTAAACATGTTATAATTAT+GGG + chr4_2:6134326-6134345 Msa0585340:intron 10.0%
!!! TTTTGAAGATTAAAAAATTT+AGG + chr4_2:6135070-6135089 Msa0585340:CDS 10.0%
!! ATTTAGTATAAAAGAAATAT+TGG + chr4_2:6136478-6136497 Msa0585340:intron 10.0%
!! TATTAGCATTAATGTAATAA+TGG - chr4_2:6132757-6132776 None:intergenic 15.0%
!!! TTTTTTTTTTTGAGTGAATA+AGG + chr4_2:6134003-6134022 Msa0585340:intron 15.0%
!! CTTTAAACATGTTATAATTA+TGG + chr4_2:6134325-6134344 Msa0585340:intron 15.0%
!!! ATCTAATTTTTTTGTAGTAT+TGG + chr4_2:6134994-6135013 Msa0585340:five_prime_UTR 15.0%
!!! TCTAATTTTTTTGTAGTATT+GGG + chr4_2:6134995-6135014 Msa0585340:five_prime_UTR 15.0%
!! TCAATTTATTAATAACTTTG+AGG + chr4_2:6135728-6135747 Msa0585340:intron 15.0%
!! TTTATCAAATGTGTTATATT+TGG + chr4_2:6135862-6135881 Msa0585340:intron 15.0%
!! ATAATATAAAATTCCAAAGT+TGG - chr4_2:6136811-6136830 None:intergenic 15.0%
!! ATTCCAAAAAGAAAAGATAA+TGG - chr4_2:6133240-6133259 None:intergenic 20.0%
!!! TCAAGTTTTTTTTTTGTTTC+AGG + chr4_2:6133302-6133321 Msa0585340:intron 20.0%
!! TGATCTATATCAATTTGAAA+GGG + chr4_2:6133360-6133379 Msa0585340:intron 20.0%
!!! TTATTGTTATTGAATGAAGA+GGG - chr4_2:6134082-6134101 None:intergenic 20.0%
!!! TTTATTGTTATTGAATGAAG+AGG - chr4_2:6134083-6134102 None:intergenic 20.0%
!! AAGTTATGACATTCTATTAT+GGG - chr4_2:6134720-6134739 None:intergenic 20.0%
!! AAAGAATGTTATTCTTTGAT+CGG + chr4_2:6135442-6135461 Msa0585340:CDS 20.0%
!! ACTTAAAAGATCTAAATATG+GGG - chr4_2:6135581-6135600 None:intergenic 20.0%
!! CACTTAAAAGATCTAAATAT+GGG - chr4_2:6135582-6135601 None:intergenic 20.0%
!! ACACTTAAAAGATCTAAATA+TGG - chr4_2:6135583-6135602 None:intergenic 20.0%
!! AAAATCAAACTCTAATTGAT+AGG - chr4_2:6135614-6135633 None:intergenic 20.0%
!! TAATAAATTGAAATGAATCC+AGG - chr4_2:6135719-6135738 None:intergenic 20.0%
!!! TTATTAATAACTTTGAGGAT+AGG + chr4_2:6135733-6135752 Msa0585340:intron 20.0%
!! AATTAAAATCAGGATTATGT+TGG - chr4_2:6135784-6135803 None:intergenic 20.0%
!!! AACATAATCCTGATTTTAAT+TGG + chr4_2:6135783-6135802 Msa0585340:intron 20.0%
!! TTATGAGATTTGATAAATGT+GGG - chr4_2:6135967-6135986 None:intergenic 20.0%
!! ATTATGAGATTTGATAAATG+TGG - chr4_2:6135968-6135987 None:intergenic 20.0%
!! ATATGAGTTATAAGATATCT+TGG + chr4_2:6136221-6136240 Msa0585340:CDS 20.0%
!!! CTTTTATACTAAATAACTTC+AGG - chr4_2:6136472-6136491 None:intergenic 20.0%
!!! TGCTATATGATTAACTTTTA+AGG + chr4_2:6136925-6136944 Msa0585340:intron 20.0%
!! AGCAAATATATGTTAACTAT+TGG + chr4_2:6137015-6137034 Msa0585340:intron 20.0%
!! CATAAAACTTTAGATCATAT+GGG - chr4_2:6137162-6137181 None:intergenic 20.0%
!! AACAATAGAAAAGTAAATTC+TGG - chr4_2:6137213-6137232 None:intergenic 20.0%
!! AACTTGATTTATCGAATAAT+AGG + chr4_2:6137518-6137537 Msa0585340:CDS 20.0%
!! TCTTTATGTTATGAATGTTT+AGG + chr4_2:6137594-6137613 Msa0585340:three_prime_UTR 20.0%
!! CTTTATGTTATGAATGTTTA+GGG + chr4_2:6137595-6137614 Msa0585340:three_prime_UTR 20.0%
! TCTTTCTTTCTTTCTTTCAT+TGG + chr4_2:6132828-6132847 Msa0585340:five_prime_UTR 25.0%
! CTTTCTTTCTTTCTTTCATT+GGG + chr4_2:6132829-6132848 Msa0585340:five_prime_UTR 25.0%
! TACTGTATTATCTTCATCAA+TGG + chr4_2:6132982-6133001 Msa0585340:five_prime_UTR 25.0%
! ATAATCTTCTCTCTTATTCA+AGG + chr4_2:6133006-6133025 Msa0585340:five_prime_UTR 25.0%
! AAAATGAAAATGGGAAAGAA+AGG - chr4_2:6133046-6133065 None:intergenic 25.0%
!! GTGAATCAATTTAAAGCAAA+AGG - chr4_2:6133089-6133108 None:intergenic 25.0%
!! AGTCCATTATCTTTTCTTTT+TGG + chr4_2:6133234-6133253 Msa0585340:intron 25.0%
!! TGAATCTACTTTCTTTTAAG+AGG + chr4_2:6133259-6133278 Msa0585340:intron 25.0%
! GTGATCTATATCAATTTGAA+AGG + chr4_2:6133359-6133378 Msa0585340:intron 25.0%
! GAAAATTCAGTAATTTGAAC+AGG + chr4_2:6133633-6133652 Msa0585340:intron 25.0%
! AATTACTTACTTCTCTTCAT+TGG + chr4_2:6133751-6133770 Msa0585340:intron 25.0%
! AAAGAGAATGAACAAAGAAA+CGG - chr4_2:6133905-6133924 None:intergenic 25.0%
! AAGAGAATGAACAAAAGAAA+CGG - chr4_2:6133953-6133972 None:intergenic 25.0%
!! TCATCTCTTATTTAAGTTCA+AGG + chr4_2:6134199-6134218 Msa0585340:intron 25.0%
! GAAGTTATGACATTCTATTA+TGG - chr4_2:6134721-6134740 None:intergenic 25.0%
!!! CAATCTTTTAACTTGATGAA+AGG - chr4_2:6134811-6134830 None:intergenic 25.0%
!! TTAAGCAAAAACTCTTTTGT+TGG + chr4_2:6134872-6134891 Msa0585340:intron 25.0%
! ACTGTCTATTAGTATTACTT+TGG + chr4_2:6134913-6134932 Msa0585340:intron 25.0%
!!! TAGGGTAGTTTGTTTTTTAA+AGG + chr4_2:6135026-6135045 Msa0585340:five_prime_UTR 25.0%
!!! TAGTTTGTTTTTTAAAGGTG+AGG + chr4_2:6135031-6135050 Msa0585340:five_prime_UTR 25.0%
!! ATTGAGAAGAAACAGTTTTA+TGG + chr4_2:6135272-6135291 Msa0585340:CDS 25.0%
!!! CTGATTTTAATTGGAGTTAA+GGG + chr4_2:6135792-6135811 Msa0585340:intron 25.0%
! ACTGACATTATATTCAGATT+AGG - chr4_2:6135843-6135862 None:intergenic 25.0%
! CTTTCCTTGAAAAAATTTGA+AGG + chr4_2:6136079-6136098 Msa0585340:CDS 25.0%
! AAATTATCTAAACCCATATG+TGG + chr4_2:6136429-6136448 Msa0585340:intron 25.0%
! TAAGTGTTTAAGCTAATGAA+TGG + chr4_2:6136555-6136574 Msa0585340:intron 25.0%
! CATATTAAAGAAGAACCATT+TGG - chr4_2:6136957-6136976 None:intergenic 25.0%
!! TAACTATTGGTTATACTTTG+AGG + chr4_2:6137028-6137047 Msa0585340:intron 25.0%
!!! TGTTTTGACGAAATAGAATT+AGG + chr4_2:6137112-6137131 Msa0585340:intron 25.0%
! GCATAAAACTTTAGATCATA+TGG - chr4_2:6137163-6137182 None:intergenic 25.0%
! TCTATTGTTAAAGATGAAGT+TGG + chr4_2:6137224-6137243 Msa0585340:intron 25.0%
! TTTCATTTAAATGCAGAAAG+TGG + chr4_2:6137324-6137343 Msa0585340:intron 25.0%
! TGTAATATTTGTGAGTTTCT+AGG + chr4_2:6137692-6137711 Msa0585340:three_prime_UTR 25.0%
TAACTTAGCTTAGCTTAGAT+TGG - chr4_2:6132941-6132960 None:intergenic 30.0%
AATCTAAGCTAAGCTAAGTT+AGG + chr4_2:6132940-6132959 Msa0585340:five_prime_UTR 30.0%
ATCTAAGCTAAGCTAAGTTA+GGG + chr4_2:6132941-6132960 Msa0585340:five_prime_UTR 30.0%
GATAATACAGTATGAGGAAA+AGG - chr4_2:6132974-6132993 None:intergenic 30.0%
GATGAAGATAATACAGTATG+AGG - chr4_2:6132980-6132999 None:intergenic 30.0%
!! TGTTTGATTTTGTCTACCTT+TGG - chr4_2:6133210-6133229 None:intergenic 30.0%
TTTCCATGAGGGTTATTATT+AGG + chr4_2:6133388-6133407 Msa0585340:intron 30.0%
! GTTATTATTAGGCTCTGATA+TGG + chr4_2:6133399-6133418 Msa0585340:intron 30.0%
! TTTTTGTTCTCAACGTGAAA+AGG - chr4_2:6133515-6133534 None:intergenic 30.0%
!!! ACTGAATTTTCAAGTCTGAA+CGG - chr4_2:6133624-6133643 None:intergenic 30.0%
AGTAATTTGAACAGGAGAAA+AGG + chr4_2:6133641-6133660 Msa0585340:intron 30.0%
! TGAATCTTATCTTTTGTACC+AGG + chr4_2:6133691-6133710 Msa0585340:intron 30.0%
TTTGTTCATTCTCTTTGTTC+AGG + chr4_2:6133909-6133928 Msa0585340:intron 30.0%
TTTGTTCATTCTCTTTGTTC+AGG + chr4_2:6133909-6133928 Msa0585340:intron 30.0%
!! GTTTGTTATCACTTATCACT+TGG + chr4_2:6134025-6134044 Msa0585340:intron 30.0%
GATACAAATAACGTTCTTCA+CGG - chr4_2:6134439-6134458 None:intergenic 30.0%
!! TCTGACAAGGTTCTAAATAA+CGG - chr4_2:6134522-6134541 None:intergenic 30.0%
! AAGTCCTATCTTTTCTTTGT+GGG - chr4_2:6134631-6134650 None:intergenic 30.0%
! AAAGTCCTATCTTTTCTTTG+TGG - chr4_2:6134632-6134651 None:intergenic 30.0%
TGATGATTAGTGTGATCTAA+TGG - chr4_2:6134745-6134764 None:intergenic 30.0%
TCATCACTAATGTCTTGTAA+TGG + chr4_2:6134759-6134778 Msa0585340:intron 30.0%
!!! AATGGAAGCTGCTTTATTTT+TGG + chr4_2:6134777-6134796 Msa0585340:intron 30.0%
!!! CTGCTTTATTTTTGGCTTTT+AGG + chr4_2:6134785-6134804 Msa0585340:intron 30.0%
!! CAAAAACTCTTTTGTTGGTT+GGG + chr4_2:6134877-6134896 Msa0585340:intron 30.0%
!!! TTCTGTTTTGATGTGATTGT+AGG + chr4_2:6134966-6134985 Msa0585340:intron 30.0%
!!! TTTGTTTTTTAAAGGTGAGG+TGG + chr4_2:6135034-6135053 Msa0585340:five_prime_UTR 30.0%
! CGATGATTTTATTACCAATG+AGG + chr4_2:6135230-6135249 Msa0585340:CDS 30.0%
TTATTACCAATGAGGTAAAG+AGG + chr4_2:6135238-6135257 Msa0585340:CDS 30.0%
CATCTTAGTGAAATTGGAAA+AGG + chr4_2:6135477-6135496 Msa0585340:CDS 30.0%
!!! TTAGCTCTTGCTTCTTTTTT+AGG + chr4_2:6135508-6135527 Msa0585340:intron 30.0%
!!! TGCTTCTTTTTTAGGTGAAA+CGG + chr4_2:6135516-6135535 Msa0585340:intron 30.0%
CCTTAACTCCAATTAAAATC+AGG - chr4_2:6135794-6135813 None:intergenic 30.0%
!!! CCTGATTTTAATTGGAGTTA+AGG + chr4_2:6135791-6135810 Msa0585340:intron 30.0%
! TAGTACATTTTGTTAGCAAC+AGG - chr4_2:6135928-6135947 None:intergenic 30.0%
!!! AGGTCCTTCAAATTTTTTCA+AGG - chr4_2:6136086-6136105 None:intergenic 30.0%
!! AATTTCAGGTTCTATTGCAA+AGG + chr4_2:6136293-6136312 Msa0585340:CDS 30.0%
GAAAATTCACCTCGTATATT+TGG - chr4_2:6136406-6136425 None:intergenic 30.0%
! TTAAGCTAATGAATGGATTC+AGG + chr4_2:6136562-6136581 Msa0585340:intron 30.0%
TCAATTATCCTGATAAGATC+TGG - chr4_2:6136634-6136653 None:intergenic 30.0%
CTTTCGTTTATTCCTGAAAA+GGG + chr4_2:6136669-6136688 Msa0585340:CDS 30.0%
!!! CTTTTAAGGTTTGATCCAAA+TGG + chr4_2:6136939-6136958 Msa0585340:intron 30.0%
CTTTAATATGCTTGTTCCAA+TGG + chr4_2:6136967-6136986 Msa0585340:intron 30.0%
!! ACAACAGAATTTGCTAAAGA+TGG - chr4_2:6137190-6137209 None:intergenic 30.0%
! TTGAACTTCTTCATGCTTTT+GGG - chr4_2:6137398-6137417 None:intergenic 30.0%
! ATAAGATTTTCGCGTCAATA+AGG - chr4_2:6137432-6137451 None:intergenic 30.0%
TATCGAATAATAGGTTAGAG+AGG + chr4_2:6137527-6137546 Msa0585340:CDS 30.0%
ATCGAATAATAGGTTAGAGA+GGG + chr4_2:6137528-6137547 Msa0585340:CDS 30.0%
ATGTTATGAATGTTTAGGGA+AGG + chr4_2:6137599-6137618 Msa0585340:three_prime_UTR 30.0%
GATTATGTATGAGTATGACA+GGG + chr4_2:6137628-6137647 Msa0585340:three_prime_UTR 30.0%
TAGTGTAACGAAGATCATTA+TGG + chr4_2:6137735-6137754 Msa0585340:three_prime_UTR 30.0%
! TCATTATGGATTACTCTTGT+TGG + chr4_2:6137749-6137768 Msa0585340:three_prime_UTR 30.0%
CTTGTGATTTAGTCTATGTT+TGG + chr4_2:6137780-6137799 Msa0585340:three_prime_UTR 30.0%
GAACAGAAACAGAAAGAGTA+GGG - chr4_2:6132706-6132725 None:intergenic 35.0%
TGAACAGAAACAGAAAGAGT+AGG - chr4_2:6132707-6132726 None:intergenic 35.0%
TGAACATTTAGAGAGATCAG+AGG - chr4_2:6133168-6133187 None:intergenic 35.0%
! AAAGGGATGTTTTTCCATGA+GGG + chr4_2:6133377-6133396 Msa0585340:intron 35.0%
!!! GAGCCCAAGGTTTTAAAAAA+CGG + chr4_2:6133427-6133446 Msa0585340:intron 35.0%
!!! GGTCCGTTTTTTAAAACCTT+GGG - chr4_2:6133433-6133452 None:intergenic 35.0%
!!! AGGTCCGTTTTTTAAAACCT+TGG - chr4_2:6133434-6133453 None:intergenic 35.0%
TTTAAAAAACGGACCTGTAC+CGG + chr4_2:6133438-6133457 Msa0585340:intron 35.0%
TACTTACTTCTCTTCATTGG+TGG + chr4_2:6133754-6133773 Msa0585340:intron 35.0%
AAGCATGTTTGTTTGTCTGT+TGG - chr4_2:6133795-6133814 None:intergenic 35.0%
TGAACAAAAGAAACGGCAAT+AGG - chr4_2:6133946-6133965 None:intergenic 35.0%
GTGTATATAAATGAGTTGCC+CGG - chr4_2:6134554-6134573 None:intergenic 35.0%
! ATCTTTTCTTTGTGGGACTT+GGG - chr4_2:6134624-6134643 None:intergenic 35.0%
! TATCTTTTCTTTGTGGGACT+TGG - chr4_2:6134625-6134644 None:intergenic 35.0%
AAGTCCCACAAAGAAAAGAT+AGG + chr4_2:6134624-6134643 Msa0585340:intron 35.0%
TTAACACATCCTTACGAATC+CGG - chr4_2:6134696-6134715 None:intergenic 35.0%
! GCAAAAACTCTTTTGTTGGT+TGG + chr4_2:6134876-6134895 Msa0585340:intron 35.0%
!!! TTTTTTGTAGTATTGGGCTG+TGG + chr4_2:6135001-6135020 Msa0585340:five_prime_UTR 35.0%
TTTAGGAAATCTCAGAAAGC+AGG + chr4_2:6135087-6135106 Msa0585340:CDS 35.0%
! GGAAAAAGATTTGGTAGACA+AGG + chr4_2:6135113-6135132 Msa0585340:CDS 35.0%
! TTTTCTGACTTACACTGATC+AGG - chr4_2:6135180-6135199 None:intergenic 35.0%
!!! GCTTCTTTTTTAGGTGAAAC+GGG + chr4_2:6135517-6135536 Msa0585340:intron 35.0%
TGAGTTGCATGATGCTTAAA+TGG + chr4_2:6135665-6135684 Msa0585340:intron 35.0%
GAGTTGCATGATGCTTAAAT+GGG + chr4_2:6135666-6135685 Msa0585340:intron 35.0%
! ATCAGGATTATGTTGGTGTT+GGG - chr4_2:6135777-6135796 None:intergenic 35.0%
AATCAGGATTATGTTGGTGT+TGG - chr4_2:6135778-6135797 None:intergenic 35.0%
GATTAGGCATGTTCAAAATG+TGG - chr4_2:6135827-6135846 None:intergenic 35.0%
TGAAACATATTCTCTGTGTC+AGG + chr4_2:6135989-6136008 Msa0585340:intron 35.0%
TTTGATGTAGATCTTGGAGA+TGG - chr4_2:6136034-6136053 None:intergenic 35.0%
AGCTTCTTTGATGTAGATCT+TGG - chr4_2:6136040-6136059 None:intergenic 35.0%
AAGATCTACATCAAAGAAGC+TGG + chr4_2:6136039-6136058 Msa0585340:CDS 35.0%
GCTTGAAAATATTCCCTACT+TGG + chr4_2:6136132-6136151 Msa0585340:CDS 35.0%
TCCCTACTTGGATATTGAAA+CGG + chr4_2:6136144-6136163 Msa0585340:CDS 35.0%
GATATTGAAACGGCATATGT+AGG + chr4_2:6136154-6136173 Msa0585340:CDS 35.0%
TAGGTCAAATATGCTTGACT+TGG + chr4_2:6136173-6136192 Msa0585340:CDS 35.0%
AGGTCAAATATGCTTGACTT+GGG + chr4_2:6136174-6136193 Msa0585340:CDS 35.0%
! TGAAAATGAACCTTTTGAGC+AGG + chr4_2:6136321-6136340 Msa0585340:CDS 35.0%
! GAAAATGAACCTTTTGAGCA+GGG + chr4_2:6136322-6136341 Msa0585340:CDS 35.0%
! TTTGGAACCTGAAGTAGTTT+AGG - chr4_2:6136388-6136407 None:intergenic 35.0%
ATAACTTCAGGAACATCCAT+GGG - chr4_2:6136460-6136479 None:intergenic 35.0%
AATAACTTCAGGAACATCCA+TGG - chr4_2:6136461-6136480 None:intergenic 35.0%
TCAGGAATAAACGAAAGGTA+AGG - chr4_2:6136666-6136685 None:intergenic 35.0%
!! CCTTTTCAGGAATAAACGAA+AGG - chr4_2:6136671-6136690 None:intergenic 35.0%
CCTTTCGTTTATTCCTGAAA+AGG + chr4_2:6136668-6136687 Msa0585340:CDS 35.0%
!! ACTTTTTCTTGTCCCTTTTC+AGG - chr4_2:6136684-6136703 None:intergenic 35.0%
TTTACCTTGTGATCCAACTT+TGG + chr4_2:6136795-6136814 Msa0585340:intron 35.0%
AATTCCAAAGTTGGATCACA+AGG - chr4_2:6136802-6136821 None:intergenic 35.0%
CCTGATTAGCATTTAACCAT+TGG - chr4_2:6136986-6137005 None:intergenic 35.0%
CCAATGGTTAAATGCTAATC+AGG + chr4_2:6136983-6137002 Msa0585340:intron 35.0%
TGATTTAGTGCTTGTCTTCA+TGG + chr4_2:6137265-6137284 Msa0585340:intron 35.0%
AGGGTTGGAGAAAAAATTCT+TGG + chr4_2:6137371-6137390 Msa0585340:CDS 35.0%
! TGAACTTCTTCATGCTTTTG+GGG - chr4_2:6137397-6137416 None:intergenic 35.0%
! GTTGAACTTCTTCATGCTTT+TGG - chr4_2:6137399-6137418 None:intergenic 35.0%
GAAGAAGTTCAACTATTGCT+TGG + chr4_2:6137406-6137425 Msa0585340:CDS 35.0%
TTGACGCGAAAATCTTATCA+AGG + chr4_2:6137434-6137453 Msa0585340:CDS 35.0%
TGACGCGAAAATCTTATCAA+GGG + chr4_2:6137435-6137454 Msa0585340:CDS 35.0%
ATTAGCAAGGGAATAGAATG+GGG - chr4_2:6137561-6137580 None:intergenic 35.0%
GATTAGCAAGGGAATAGAAT+GGG - chr4_2:6137562-6137581 None:intergenic 35.0%
TGATTAGCAAGGGAATAGAA+TGG - chr4_2:6137563-6137582 None:intergenic 35.0%
CTAAAGACTGTGATTAGCAA+GGG - chr4_2:6137573-6137592 None:intergenic 35.0%
ACTAAAGACTGTGATTAGCA+AGG - chr4_2:6137574-6137593 None:intergenic 35.0%
GGATTATGTATGAGTATGAC+AGG + chr4_2:6137627-6137646 Msa0585340:three_prime_UTR 35.0%
TGTTCACTCTCTCTCTTCAT+AGG + chr4_2:6132721-6132740 Msa0585340:five_prime_UTR 40.0%
CATGCAATAAAGTTGTGCAG+AGG - chr4_2:6133138-6133157 None:intergenic 40.0%
ACATTTAGAGAGATCAGAGG+CGG - chr4_2:6133165-6133184 None:intergenic 40.0%
! CTTTGCCTGTTTTATGCCAA+AGG + chr4_2:6133191-6133210 Msa0585340:intron 40.0%
GTCTACCTTTGGCATAAAAC+AGG - chr4_2:6133199-6133218 None:intergenic 40.0%
! GAAAGGGATGTTTTTCCATG+AGG + chr4_2:6133376-6133395 Msa0585340:intron 40.0%
GAGCCTAATAATAACCCTCA+TGG - chr4_2:6133394-6133413 None:intergenic 40.0%
TTAAAAAACGGACCTGTACC+GGG + chr4_2:6133439-6133458 Msa0585340:intron 40.0%
AACGTGAAAAGGTCCGAAAA+CGG - chr4_2:6133504-6133523 None:intergenic 40.0%
GAGAAAAGGAATCGAAGAAC+AGG + chr4_2:6133655-6133674 Msa0585340:intron 40.0%
AATCGAAGAACAGGAGAAGA+AGG + chr4_2:6133664-6133683 Msa0585340:intron 40.0%
! AGATTGAGATTTGAGATGCC+TGG - chr4_2:6133712-6133731 None:intergenic 40.0%
TTACTTCTCTTCATTGGTGG+TGG + chr4_2:6133757-6133776 Msa0585340:intron 40.0%
GAACGACAAGAAGCAAGAAA+CGG - chr4_2:6133876-6133895 None:intergenic 40.0%
!! AAGGTTCTAAATAACGGTCG+CGG - chr4_2:6134516-6134535 None:intergenic 40.0%
ACATCAAGCCCAATAGTGTT+GGG + chr4_2:6134574-6134593 Msa0585340:intron 40.0%
!! AACTCTTTTGTTGGTTGGGT+TGG + chr4_2:6134881-6134900 Msa0585340:intron 40.0%
AGCAGGTGTGGAAAAAGATT+TGG + chr4_2:6135104-6135123 Msa0585340:CDS 40.0%
TTACCAATGAGGTAAAGAGG+AGG + chr4_2:6135241-6135260 Msa0585340:CDS 40.0%
TCGAGACATGAATCTTCTTC+AGG - chr4_2:6135306-6135325 None:intergenic 40.0%
TGAAGAAGATTCATGTCTCG+AGG + chr4_2:6135305-6135324 Msa0585340:CDS 40.0%
AAGATTCATGTCTCGAGGAA+GGG + chr4_2:6135310-6135329 Msa0585340:CDS 40.0%
GTGCAGCATCTTAGTGAAAT+TGG + chr4_2:6135471-6135490 Msa0585340:CDS 40.0%
!!! TCTTTTTTAGGTGAAACGGG+AGG + chr4_2:6135520-6135539 Msa0585340:intron 40.0%
!!! CTTTTTTAGGTGAAACGGGA+GGG + chr4_2:6135521-6135540 Msa0585340:intron 40.0%
GAGATTTGATAAATGTGGGC+AGG - chr4_2:6135963-6135982 None:intergenic 40.0%
TTTCAAGGAAAGACACCGAA+GGG - chr4_2:6136071-6136090 None:intergenic 40.0%
!! TTTTCAAGGAAAGACACCGA+AGG - chr4_2:6136072-6136091 None:intergenic 40.0%
AGATGTTCAGTCTCATCATC+AGG - chr4_2:6136106-6136125 None:intergenic 40.0%
GCCGTTTCAATATCCAAGTA+GGG - chr4_2:6136148-6136167 None:intergenic 40.0%
! TGCCGTTTCAATATCCAAGT+AGG - chr4_2:6136149-6136168 None:intergenic 40.0%
!! TCAAATATGCTTGACTTGGG+AGG + chr4_2:6136177-6136196 Msa0585340:CDS 40.0%
GCAGGAGTTTCAACAATTTC+AGG + chr4_2:6136279-6136298 Msa0585340:CDS 40.0%
! GAGCATAAATTTCAGGTCGA+GGG - chr4_2:6136348-6136367 None:intergenic 40.0%
CTAGAGCGAGCATAAATTTC+AGG - chr4_2:6136355-6136374 None:intergenic 40.0%
CTGAAATTTATGCTCGCTCT+AGG + chr4_2:6136353-6136372 Msa0585340:CDS 40.0%
CACTTTGCCTAAACTACTTC+AGG + chr4_2:6136378-6136397 Msa0585340:CDS 40.0%
! CTTCAGGTTCCAAATATACG+AGG + chr4_2:6136394-6136413 Msa0585340:CDS 40.0%
TAACTTCAGGAACATCCATG+GGG - chr4_2:6136459-6136478 None:intergenic 40.0%
TTCTTGCTCCAGATCTTATC+AGG + chr4_2:6136623-6136642 Msa0585340:CDS 40.0%
TCAAGCGTTATCAACCTGTT+TGG + chr4_2:6136703-6136722 Msa0585340:CDS 40.0%
! GCTGATTCTGATTTCCAAAC+AGG - chr4_2:6136720-6136739 None:intergenic 40.0%
!! TCTGCTTTTAATCCAAGTGC+AGG + chr4_2:6137065-6137084 Msa0585340:intron 40.0%
CTTTAGATCATATGGGCAGT+AGG - chr4_2:6137155-6137174 None:intergenic 40.0%
!! CAAGGGTTCTAAGAATGACT+AGG + chr4_2:6137452-6137471 Msa0585340:CDS 40.0%
! TGACTAGAGAACAGCTGTTT+TGG + chr4_2:6137476-6137495 Msa0585340:CDS 40.0%
GAATGTTTAGGGAAGGTTTG+TGG + chr4_2:6137606-6137625 Msa0585340:three_prime_UTR 40.0%
GAGTGAAGTGAAGTGAAGTG+AGG - chr4_2:6132910-6132929 None:intergenic 45.0%
GCTTAGCTTAGATTGGAGCT+TGG - chr4_2:6132934-6132953 None:intergenic 45.0%
CATTTAGAGAGATCAGAGGC+GGG - chr4_2:6133164-6133183 None:intergenic 45.0%
TGATATGGTATCAGAGCCCA+AGG + chr4_2:6133414-6133433 Msa0585340:intron 45.0%
!! CTGCCGATACCGATTTGTAA+CGG - chr4_2:6133472-6133491 None:intergenic 45.0%
AAAAGGTCCGAAAACGGTCA+CGG - chr4_2:6133498-6133517 None:intergenic 45.0%
TCACAGCAAAATCGCCGTTA+CGG + chr4_2:6133535-6133554 Msa0585340:intron 45.0%
TGTCGCGATTTCGGCTATAA+CGG - chr4_2:6134469-6134488 None:intergenic 45.0%
CGTTAAGGTTGTCGCGATTT+CGG - chr4_2:6134478-6134497 None:intergenic 45.0%
AAATGAGTTGCCCGGTCAAT+AGG - chr4_2:6134546-6134565 None:intergenic 45.0%
CACATCAAGCCCAATAGTGT+TGG + chr4_2:6134573-6134592 Msa0585340:intron 45.0%
CTGTCACACCCAACACTATT+GGG - chr4_2:6134585-6134604 None:intergenic 45.0%
! CAATAGTGTTGGGTGTGACA+GGG + chr4_2:6134584-6134603 Msa0585340:intron 45.0%
! TTACGAATCCGGCTTGTAAG+GGG - chr4_2:6134685-6134704 None:intergenic 45.0%
! CTTACGAATCCGGCTTGTAA+GGG - chr4_2:6134686-6134705 None:intergenic 45.0%
! TAGTATTGGGCTGTGGCTTA+GGG + chr4_2:6135008-6135027 Msa0585340:five_prime_UTR 45.0%
AAAGGTGAGGTGGTAAAGCA+TGG + chr4_2:6135044-6135063 Msa0585340:exon 45.0%
GAAATCTCAGAAAGCAGGTG+TGG + chr4_2:6135092-6135111 Msa0585340:CDS 45.0%
GAAGATTCATGTCTCGAGGA+AGG + chr4_2:6135309-6135328 Msa0585340:CDS 45.0%
AGATTCATGTCTCGAGGAAG+GGG + chr4_2:6135311-6135330 Msa0585340:CDS 45.0%
GAGAGACAGGACCAAATGAA+TGG + chr4_2:6135352-6135371 Msa0585340:CDS 45.0%
AGACAGGACCAAATGAATGG+AGG + chr4_2:6135355-6135374 Msa0585340:CDS 45.0%
GACAGGACCAAATGAATGGA+GGG + chr4_2:6135356-6135375 Msa0585340:CDS 45.0%
ACCAAATGAATGGAGGGATG+TGG + chr4_2:6135362-6135381 Msa0585340:CDS 45.0%
TCCACATCCCTCCATTCATT+TGG - chr4_2:6135366-6135385 None:intergenic 45.0%
AAATGAATGGAGGGATGTGG+AGG + chr4_2:6135365-6135384 Msa0585340:CDS 45.0%
CATCATGCAACTCATGTAGC+AGG - chr4_2:6135659-6135678 None:intergenic 45.0%
! TTTGAAACTTGGATGCTGCC+TGG + chr4_2:6135698-6135717 Msa0585340:intron 45.0%
TTCAAGGAAAGACACCGAAG+GGG - chr4_2:6136070-6136089 None:intergenic 45.0%
! CGAGCATAAATTTCAGGTCG+AGG - chr4_2:6136349-6136368 None:intergenic 45.0%
GTAGACTGAACCTGTTGTAG+AGG - chr4_2:6136751-6136770 None:intergenic 45.0%
GGTTCAGTCTACTCTTGAGA+AGG + chr4_2:6136759-6136778 Msa0585340:CDS 45.0%
CAAGTGCAGGACAGCTTATT+GGG + chr4_2:6137078-6137097 Msa0585340:intron 45.0%
GCAGAAAGTGGTGAAACTGA+AGG + chr4_2:6137336-6137355 Msa0585340:intron 45.0%
TGGTGAAACTGAAGGAGCTA+AGG + chr4_2:6137344-6137363 Msa0585340:CDS 45.0%
ACTGAAGGAGCTAAGGAAGA+AGG + chr4_2:6137351-6137370 Msa0585340:CDS 45.0%
CTGAAGGAGCTAAGGAAGAA+GGG + chr4_2:6137352-6137371 Msa0585340:CDS 45.0%
!! TAAAAAAAAAAAATGAAAAT+GGG - chr4_2:6133055-6133074 None:intergenic 5.0%
!! TTAAAAAAAAAAAATGAAAA+TGG - chr4_2:6133056-6133075 None:intergenic 5.0%
ATTTGTAACGGCCGCAATCC+CGG - chr4_2:6133460-6133479 None:intergenic 50.0%
GGATTGCGGCCGTTACAAAT+CGG + chr4_2:6133460-6133479 Msa0585340:intron 50.0%
CGGCCGTTACAAATCGGTAT+CGG + chr4_2:6133466-6133485 Msa0585340:intron 50.0%
!! TCTCTTCATTGGTGGTGGAC+TGG + chr4_2:6133762-6133781 Msa0585340:intron 50.0%
AGAAGCAAGAAACGGCAAGC+AGG - chr4_2:6133868-6133887 None:intergenic 50.0%
GTGCGCATACGTGTGTGTAT+TGG - chr4_2:6134054-6134073 None:intergenic 50.0%
CCTTGTCAGAGCCTATTGAC+CGG + chr4_2:6134532-6134551 Msa0585340:intron 50.0%
CTTGTCAGAGCCTATTGACC+GGG + chr4_2:6134533-6134552 Msa0585340:intron 50.0%
CCTGTCACACCCAACACTAT+TGG - chr4_2:6134586-6134605 None:intergenic 50.0%
! CCAATAGTGTTGGGTGTGAC+AGG + chr4_2:6134583-6134602 Msa0585340:intron 50.0%
TTGGGTGTGACAGGGTGTAT+TGG + chr4_2:6134592-6134611 Msa0585340:intron 50.0%
TGGGTGTGACAGGGTGTATT+GGG + chr4_2:6134593-6134612 Msa0585340:intron 50.0%
ACAACTCTCCCCTTACAAGC+CGG + chr4_2:6134674-6134693 Msa0585340:intron 50.0%
! CCTTACGAATCCGGCTTGTA+AGG - chr4_2:6134687-6134706 None:intergenic 50.0%
CCTTACAAGCCGGATTCGTA+AGG + chr4_2:6134684-6134703 Msa0585340:intron 50.0%
! GTAGTATTGGGCTGTGGCTT+AGG + chr4_2:6135007-6135026 Msa0585340:five_prime_UTR 50.0%
! GTGTTGGGCTTTGATTCCTC+AGG - chr4_2:6135150-6135169 None:intergenic 50.0%
GAGGAATCAAAGCCCAACAC+TGG + chr4_2:6135150-6135169 Msa0585340:CDS 50.0%
GAATCAAAGCCCAACACTGG+TGG + chr4_2:6135153-6135172 Msa0585340:CDS 50.0%
TGATCAGGACCACCAGTGTT+GGG - chr4_2:6135165-6135184 None:intergenic 50.0%
! CGATTCTTGTGCTGATGCTG+AGG + chr4_2:6135203-6135222 Msa0585340:CDS 50.0%
GAGCCTCCTCTTTACCTCAT+TGG - chr4_2:6135247-6135266 None:intergenic 50.0%
TGAGGTAAAGAGGAGGCTCA+AGG + chr4_2:6135248-6135267 Msa0585340:CDS 50.0%
CATGATGCTTAAATGGGCGC+TGG + chr4_2:6135672-6135691 Msa0585340:intron 50.0%
!!! GGCGCTGGCATTTTGAAACT+TGG + chr4_2:6135687-6135706 Msa0585340:intron 50.0%
GTTGAAACTCCTGCGCACTA+CGG - chr4_2:6136273-6136292 None:intergenic 50.0%
CTGAACCTGTTGTAGAGGAG+TGG - chr4_2:6136746-6136765 None:intergenic 50.0%
CCAATAAGCTGTCCTGCACT+TGG - chr4_2:6137080-6137099 None:intergenic 50.0%
CCAAGTGCAGGACAGCTTAT+TGG + chr4_2:6137077-6137096 Msa0585340:intron 50.0%
TGCAGGACAGCTTATTGGGA+GGG + chr4_2:6137082-6137101 Msa0585340:intron 50.0%
AGGAGCTAAGGAAGAAGGGT+TGG + chr4_2:6137356-6137375 Msa0585340:CDS 50.0%
CAAGGGAATAGAATGGGGCA+TGG - chr4_2:6137556-6137575 None:intergenic 50.0%
GAGTATGACAGGGCATAGCA+AGG + chr4_2:6137638-6137657 Msa0585340:three_prime_UTR 50.0%
TCGTCGTACGCTCAGATCAG+AGG - chr4_2:6132674-6132693 None:intergenic 55.0%
AATCGCCGTTACGGCCGTTA+CGG + chr4_2:6133544-6133563 Msa0585340:intron 55.0%
ACGGTGTTTCGCGGCCATAA+CGG - chr4_2:6133593-6133612 None:intergenic 55.0%
AGTCTGAACGGAGTCCGCAA+CGG - chr4_2:6133612-6133631 None:intergenic 55.0%
!! CTTCATTGGTGGTGGACTGG+TGG + chr4_2:6133765-6133784 Msa0585340:intron 55.0%
GAAACGGCAAGCAGGAAGGA+AGG - chr4_2:6133860-6133879 None:intergenic 55.0%
GCAAGAAACGGCAAGCAGGA+AGG - chr4_2:6133864-6133883 None:intergenic 55.0%
! CCGGTCAATAGGCTCTGACA+AGG - chr4_2:6134535-6134554 None:intergenic 55.0%
! GGCTTTGATTCCTCAGGCTC+AGG - chr4_2:6135144-6135163 None:intergenic 55.0%
CTGATCAGGACCACCAGTGT+TGG - chr4_2:6135166-6135185 None:intergenic 55.0%
TTCATGTCTCGAGGAAGGGG+AGG + chr4_2:6135314-6135333 Msa0585340:CDS 55.0%
AGGGGAGGATGAAGAGGAAG+AGG + chr4_2:6135329-6135348 Msa0585340:CDS 55.0%
GGGGAGGATGAAGAGGAAGA+GGG + chr4_2:6135330-6135349 Msa0585340:CDS 55.0%
GAAGAGGAAGAGGGAGAGAC+AGG + chr4_2:6135339-6135358 Msa0585340:CDS 55.0%
AGAAGCTGGCATCTCCCCTT+CGG + chr4_2:6136053-6136072 Msa0585340:CDS 55.0%
GCACTACGGCTGTAACAGGT+AGG - chr4_2:6136259-6136278 None:intergenic 55.0%
TTCAGGAACATCCATGGGGC+AGG - chr4_2:6136455-6136474 None:intergenic 55.0%
GTGCAGGACAGCTTATTGGG+AGG + chr4_2:6137081-6137100 Msa0585340:intron 55.0%
GCAGGACAGCTTATTGGGAG+GGG + chr4_2:6137083-6137102 Msa0585340:intron 55.0%
CAGGACAGCTTATTGGGAGG+GGG + chr4_2:6137084-6137103 Msa0585340:intron 55.0%
ACGGACCTGTACCGGGATTG+CGG + chr4_2:6133446-6133465 Msa0585340:intron 60.0%
! GCAGCCACCGTGACCGTTTT+CGG + chr4_2:6133488-6133507 Msa0585340:intron 60.0%
AGGTCCGAAAACGGTCACGG+TGG - chr4_2:6133495-6133514 None:intergenic 60.0%
GCGTTCCGTAACGGCCGTAA+CGG - chr4_2:6133552-6133571 None:intergenic 60.0%
GCCGTTACGGAACGCCGTTA+CGG + chr4_2:6133557-6133576 Msa0585340:intron 60.0%
CCCGTAACGGCGTTCCGTAA+CGG - chr4_2:6133561-6133580 None:intergenic 60.0%
CCGTTACGGAACGCCGTTAC+GGG + chr4_2:6133558-6133577 Msa0585340:intron 60.0%
ACGGTGTTTCGCGCCCGTAA+CGG - chr4_2:6133574-6133593 None:intergenic 60.0%
ACGGGCGCGAAACACCGTTA+TGG + chr4_2:6133576-6133595 Msa0585340:intron 60.0%
ATGGCCGCGAAACACCGTTG+CGG + chr4_2:6133595-6133614 Msa0585340:intron 60.0%
GAGTCCGCAACGGTGTTTCG+CGG - chr4_2:6133602-6133621 None:intergenic 60.0%
CGAGGAAGGGGAGGATGAAG+AGG + chr4_2:6135323-6135342 Msa0585340:CDS 60.0%
TGGAGGGATGTGGAGGCAGA+AGG + chr4_2:6135372-6135391 Msa0585340:CDS 60.0%
TGGAGGCAGAAGGCCAGCAA+TGG + chr4_2:6135382-6135401 Msa0585340:CDS 60.0%
AGGCAGAAGGCCAGCAATGG+TGG + chr4_2:6135385-6135404 Msa0585340:CDS 60.0%
CAAAGCCTCGCCACCATTGC+TGG - chr4_2:6135398-6135417 None:intergenic 60.0%
CTGCGCACTACGGCTGTAAC+AGG - chr4_2:6136263-6136282 None:intergenic 60.0%
CTGTTACAGCCGTAGTGCGC+AGG + chr4_2:6136261-6136280 Msa0585340:CDS 60.0%
CCATGGGGCAGGCCACATAT+GGG - chr4_2:6136444-6136463 None:intergenic 60.0%
TCCATGGGGCAGGCCACATA+TGG - chr4_2:6136445-6136464 None:intergenic 60.0%
GCTCGCCACTCCTCTACAAC+AGG + chr4_2:6136738-6136757 Msa0585340:CDS 60.0%
AACGGCCGCAATCCCGGTAC+AGG - chr4_2:6133454-6133473 None:intergenic 65.0%
TCGCGATCGCGGTCGCGTTA+AGG - chr4_2:6134493-6134512 None:intergenic 65.0%
CAAGGCAGTGCCTGAGCCTG+AGG + chr4_2:6135131-6135150 Msa0585340:CDS 65.0%
! GAAGGCCAGCAATGGTGGCG+AGG + chr4_2:6135390-6135409 Msa0585340:CDS 65.0%
GGTCGAGGGCCCTGCTCAAA+AGG - chr4_2:6136334-6136353 None:intergenic 65.0%
CCCATATGTGGCCTGCCCCA+TGG + chr4_2:6136441-6136460 Msa0585340:intron 65.0%
AACGGTCGCGGTCGCGATCG+CGG - chr4_2:6134504-6134523 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 6132652 6137824 6132652 ID=Msa0585340;Name=Msa0585340
chr4_2 mRNA 6132652 6137824 6132652 ID=Msa0585340-mRNA-1;Parent=Msa0585340;Name=Msa0585340-mRNA-1;_AED=0.07;_eAED=0.07;_QI=451|1|1|1|0.75|0.6|5|245|425
chr4_2 exon 6132652 6133027 6132652 ID=Msa0585340-mRNA-1:exon:1476;Parent=Msa0585340-mRNA-1
chr4_2 exon 6134988 6135498 6134988 ID=Msa0585340-mRNA-1:exon:1477;Parent=Msa0585340-mRNA-1
chr4_2 exon 6136011 6136415 6136011 ID=Msa0585340-mRNA-1:exon:1478;Parent=Msa0585340-mRNA-1
chr4_2 exon 6136584 6136780 6136584 ID=Msa0585340-mRNA-1:exon:1479;Parent=Msa0585340-mRNA-1
chr4_2 exon 6137340 6137824 6137340 ID=Msa0585340-mRNA-1:exon:1480;Parent=Msa0585340-mRNA-1
chr4_2 five_prime_UTR 6132652 6133027 6132652 ID=Msa0585340-mRNA-1:five_prime_utr;Parent=Msa0585340-mRNA-1
chr4_2 five_prime_UTR 6134988 6135062 6134988 ID=Msa0585340-mRNA-1:five_prime_utr;Parent=Msa0585340-mRNA-1
chr4_2 CDS 6135063 6135498 6135063 ID=Msa0585340-mRNA-1:cds;Parent=Msa0585340-mRNA-1
chr4_2 CDS 6136011 6136415 6136011 ID=Msa0585340-mRNA-1:cds;Parent=Msa0585340-mRNA-1
chr4_2 CDS 6136584 6136780 6136584 ID=Msa0585340-mRNA-1:cds;Parent=Msa0585340-mRNA-1
chr4_2 CDS 6137340 6137579 6137340 ID=Msa0585340-mRNA-1:cds;Parent=Msa0585340-mRNA-1
chr4_2 three_prime_UTR 6137580 6137824 6137580 ID=Msa0585340-mRNA-1:three_prime_utr;Parent=Msa0585340-mRNA-1
Gene Sequence

>Msa0585340

ATGGATTTTTTGAAGATTAAAAAATTTAGGAAATCTCAGAAAGCAGGTGTGGAAAAAGATTTGGTAGACAAGGCAGTGCCTGAGCCTGAGGAATCAAAGCCCAACACTGGTGGTCCTGATCAGTGTAAGTCAGAAAATGTCGATTCTTGTGCTGATGCTGAGGACGACGATGATTTTATTACCAATGAGGTAAAGAGGAGGCTCAAGGAATTGAGAAGAAACAGTTTTATGGTGTTGATTCCTGAAGAAGATTCATGTCTCGAGGAAGGGGAGGATGAAGAGGAAGAGGGAGAGACAGGACCAAATGAATGGAGGGATGTGGAGGCAGAAGGCCAGCAATGGTGGCGAGGCTTTGATGCTGTTTTTGAAAAGTACTGTGAAAGAATGTTATTCTTTGATCGGATGAATGTGCAGCATCTTAGTGAAATTGGAAAAGGTTCACAGAACACTTCAACTCCATCTCCAAGATCTACATCAAAGAAGCTGGCATCTCCCCTTCGGTGTCTTTCCTTGAAAAAATTTGAAGGACCTGATGATGAGACTGAACATCTTCAAGAGCTTGAAAATATTCCCTACTTGGATATTGAAACGGCATATGTAGGTCAAATATGCTTGACTTGGGAGGCTCTTCATTGTCAATACTCTCATATGAGTTATAAGATATCTTGGCAACATGAGAATCCTACCTGTTACAGCCGTAGTGCGCAGGAGTTTCAACAATTTCAGGTTCTATTGCAAAGGTTTATTGAAAATGAACCTTTTGAGCAGGGCCCTCGACCTGAAATTTATGCTCGCTCTAGGAACACTTTGCCTAAACTACTTCAGGTTCCAAATATACGAGGTTCAGATCATGAAGTAACAGATGAGTCAGATATCAGAGTTCTTGCTCCAGATCTTATCAGGATAATTGAAAACTCTATCCTTACCTTTCGTTTATTCCTGAAAAGGGACAAGAAAAAGTCAAGCGTTATCAACCTGTTTGGAAATCAGAATCAGCTCGCCACTCCTCTACAACAGGTTCAGTCTACTCTTGAGAAGAAAGTGGTGAAACTGAAGGAGCTAAGGAAGAAGGGTTGGAGAAAAAATTCTTGGCCCCAAAAGCATGAAGAAGTTCAACTATTGCTTGGCCTTATTGACGCGAAAATCTTATCAAGGGTTCTAAGAATGACTAGGATGACTAGAGAACAGCTGTTTTGGTGTGAAGAAAAGATGAAAAAACTTGATTTATCGAATAATAGGTTAGAGAGGGATCCATGCCCCATTCTATTCCCTTGCTAA
Protein sequence

>Msa0585340

MDFLKIKKFRKSQKAGVEKDLVDKAVPEPEESKPNTGGPDQCKSENVDSCADAEDDDDFITNEVKRRLKELRRNSFMVLIPEEDSCLEEGEDEEEEGETGPNEWRDVEAEGQQWWRGFDAVFEKYCERMLFFDRMNVQHLSEIGKGSQNTSTPSPRSTSKKLASPLRCLSLKKFEGPDDETEHLQELENIPYLDIETAYVGQICLTWEALHCQYSHMSYKISWQHENPTCYSRSAQEFQQFQVLLQRFIENEPFEQGPRPEIYARSRNTLPKLLQVPNIRGSDHEVTDESDIRVLAPDLIRIIENSILTFRLFLKRDKKKSSVINLFGNQNQLATPLQQVQSTLEKKVVKLKELRKKGWRKNSWPQKHEEVQLLLGLIDAKILSRVLRMTRMTREQLFWCEEKMKKLDLSNNRLERDPCPILFPC*