Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1334050 | Msa1361430 | 0.888502 | 5.579058e-73 | -8.615850e-47 |
Msa1222130 | Msa1361430 | 0.895448 | 9.490828e-76 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 81 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACTTGGGTGGTGTGGGAAT+AGG | 0.179418 | tig0017497:+11858 | Msa1361430:CDS |
TCTGGTTCTGGTTCTGCTTC+AGG | 0.203688 | tig0017497:+11972 | Msa1361430:CDS |
GCCGGTGCAGGGTCTGGTTC+AGG | 0.215595 | tig0017497:+11936 | Msa1361430:CDS |
TCTGGTTCGGGTTCTGGTTC+TGG | 0.216048 | tig0017497:+11960 | Msa1361430:CDS |
TCAGGGTCTGGTTCGGGTTC+TGG | 0.223414 | tig0017497:+11954 | Msa1361430:CDS |
CATGCTGGGTCAGGGTCTTC+TGG | 0.234545 | tig0017497:+12110 | Msa1361430:CDS |
ACTTGGGTGGTGTGGGAATA+GGG | 0.241823 | tig0017497:+11859 | Msa1361430:CDS |
TCTCGTGCAGGGTCAGGGGC+TGG | 0.277683 | tig0017497:+12047 | Msa1361430:CDS |
GGTGGTGGTGGTGCTGGCTC+TGG | 0.298903 | tig0017497:+11912 | Msa1361430:CDS |
GCTGGCTCTGGTGCCGGTGC+AGG | 0.301841 | tig0017497:+11924 | Msa1361430:CDS |
GTCTGGTTCAGGGTCTGGTT+CGG | 0.312395 | tig0017497:+11947 | Msa1361430:CDS |
TCTGGTTCAGGGTCTGGTTC+GGG | 0.325239 | tig0017497:+11948 | Msa1361430:CDS |
GCAGGATCTCGTGCAGGGTC+AGG | 0.327834 | tig0017497:+12041 | Msa1361430:CDS |
GCAGGGTCTCATGCTGGGTC+AGG | 0.339790 | tig0017497:+12170 | Msa1361430:CDS |
ATAGGGTTGGGTGCTGGTCT+AGG | 0.348841 | tig0017497:+11876 | Msa1361430:CDS |
GCAGGGTCTGGTTCAGGGTC+TGG | 0.350841 | tig0017497:+11942 | Msa1361430:CDS |
GCAGGTTCTCATGCTGGGTC+AGG | 0.351647 | tig0017497:+12101 | Msa1361430:CDS |
TCTCATGCTGGGTCAGGGTC+TGG | 0.360214 | tig0017497:+12176 | Msa1361430:CDS |
TCTGGTTCTGCTTCAGGATC+GGG | 0.360619 | tig0017497:+11978 | Msa1361430:CDS |
GGATCGGGATCAGGGTCTTC+TGG | 0.361785 | tig0017497:+11993 | Msa1361430:CDS |
CTCGTGCAGGGTCAGGGGCT+GGG | 0.364749 | tig0017497:+12048 | Msa1361430:CDS |
GCAGGGTCAGGGGCTGGGTC+AGG | 0.366905 | tig0017497:+12053 | Msa1361430:CDS |
TCAGGGTCTGGTTCTGAAGC+TGG | 0.377186 | tig0017497:+12188 | Msa1361430:CDS |
TCATATGCAGGGTCTCATGC+TGG | 0.384968 | tig0017497:+12164 | Msa1361430:CDS |
TTCTGGTTCTGCTTCAGGAT+CGG | 0.386989 | tig0017497:+11977 | Msa1361430:CDS |
TCTGGTGCCGGTGCAGGGTC+TGG | 0.387411 | tig0017497:+11930 | Msa1361430:CDS |
AAAGGACCTTGGGTTGGACT+TGG | 0.389761 | tig0017497:+11842 | Msa1361430:CDS |
TTGGGTGCTGGTCTAGGACT+TGG | 0.390919 | tig0017497:+11882 | Msa1361430:CDS |
TCTGCTTCAGGATCGGGATC+AGG | 0.391270 | tig0017497:+11984 | Msa1361430:CDS |
GGGTCAGGGTCTTCTGGAGC+AGG | 0.391858 | tig0017497:+12116 | Msa1361430:CDS |
TGGGTTGGACTTGGGTGGTG+TGG | 0.397876 | tig0017497:+11851 | Msa1361430:CDS |
CTTGGACTTGGTGGTGGTGG+TGG | 0.399016 | tig0017497:+11900 | Msa1361430:CDS |
GGGTTGGACTTGGGTGGTGT+GGG | 0.411811 | tig0017497:+11852 | Msa1361430:CDS |
TCATATGCAGGTTCTCATGC+TGG | 0.411964 | tig0017497:+12095 | Msa1361430:CDS |
CCGGTGCAGGGTCTGGTTCA+GGG | 0.417735 | tig0017497:+11937 | Msa1361430:CDS |
CAGGATCTCGTGCAGGGTCA+GGG | 0.422958 | tig0017497:+12042 | Msa1361430:CDS |
GGGTGGTGTGGGAATAGGGT+TGG | 0.424884 | tig0017497:+11863 | Msa1361430:CDS |
GTGGGAATAGGGTTGGGTGC+TGG | 0.428348 | tig0017497:+11870 | Msa1361430:CDS |
TCTGAAGCTGGTTCATATGC+AGG | 0.430821 | tig0017497:+12200 | Msa1361430:CDS |
GGTGGTGCTGGCTCTGGTGC+CGG | 0.433528 | tig0017497:+11918 | Msa1361430:CDS |
GCTGGTCTAGGACTTGGACT+TGG | 0.437253 | tig0017497:+11888 | Msa1361430:CDS |
GGACTTGGACTTGGTGGTGG+TGG | 0.442166 | tig0017497:+11897 | Msa1361430:CDS |
CTGGCTCTGGTGCCGGTGCA+GGG | 0.443610 | tig0017497:+11925 | Msa1361430:CDS |
TCTGAAGCCGGTTCATATGC+AGG | 0.445047 | tig0017497:+12152 | Msa1361430:CDS |
GCAGGGTCCCATGCTGGATC+AGG | 0.455555 | tig0017497:+12218 | Msa1361430:CDS |
TCATATGCAGGGTCCCATGC+TGG | 0.457998 | tig0017497:+12212 | Msa1361430:CDS |
TCTCATGCAGGATCTCGTGC+AGG | 0.458538 | tig0017497:+12035 | Msa1361430:CDS |
CTAGGACTTGGACTTGGTGG+TGG | 0.462464 | tig0017497:+11894 | Msa1361430:CDS |
GGATCAGGGTCTTCTGGAGC+TGG | 0.463140 | tig0017497:+11999 | Msa1361430:CDS |
TCTGAAGCCGGTTCATATGC+AGG | 0.467588 | tig0017497:+12083 | Msa1361430:CDS |
TGAAAGTAGAGCAGCGAGAA+AGG | 0.468232 | tig0017497:+11824 | Msa1361430:CDS |
GGTGGTGTGGGAATAGGGTT+GGG | 0.480105 | tig0017497:+11864 | Msa1361430:CDS |
GAGCAGCGAGAAAGGACCTT+GGG | 0.484360 | tig0017497:+11832 | Msa1361430:CDS |
CAGGGTCTCATGCTGGGTCA+GGG | 0.484638 | tig0017497:+12171 | Msa1361430:CDS |
GGTCTAGGACTTGGACTTGG+TGG | 0.486657 | tig0017497:+11891 | Msa1361430:CDS |
TCTGGAGCTGGTTCTGAAGC+CGG | 0.491049 | tig0017497:+12011 | Msa1361430:CDS |
TCAGAAGCCGGTTCTGAAGC+CGG | 0.491057 | tig0017497:+12140 | Msa1361430:CDS |
AAGGACCTTGGGTTGGACTT+GGG | 0.494177 | tig0017497:+11843 | Msa1361430:CDS |
ATATGAACCGGCTTCAGAAC+CGG | 0.494377 | tig0017497:-12147 | Msa1361430:intergenic |
ATGAGAACCTGCATATGAAC+CGG | 0.496137 | tig0017497:-12090 | Msa1361430:intergenic |
ATGAGACCCTGCATATGAAC+CGG | 0.496137 | tig0017497:-12159 | Msa1361430:intergenic |
CAGGTTCTCATGCTGGGTCA+GGG | 0.496495 | tig0017497:+12102 | Msa1361430:CDS |
TCTGAAGCCGGCTCTCATGC+AGG | 0.510342 | tig0017497:+12023 | Msa1361430:CDS |
CATATGCAGGGTCTCATGCT+GGG | 0.511139 | tig0017497:+12165 | Msa1361430:CDS |
CTGCTTCAGGATCGGGATCA+GGG | 0.517642 | tig0017497:+11985 | Msa1361430:CDS |
CATATGCAGGTTCTCATGCT+GGG | 0.520335 | tig0017497:+12096 | Msa1361430:CDS |
TCTGGAGCAGGTTCAGAAGC+CGG | 0.521004 | tig0017497:+12128 | Msa1361430:CDS |
GACCTTGGGTTGGACTTGGG+TGG | 0.531909 | tig0017497:+11846 | Msa1361430:CDS |
TCCCATGCTGGATCAGGAAG+TGG | 0.533422 | tig0017497:+12224 | Msa1361430:CDS |
CCCTGAACCAGACCCTGCAC+CGG | 0.544836 | tig0017497:-11937 | Msa1361430:intergenic |
AGGATCTCGTGCAGGGTCAG+GGG | 0.549900 | tig0017497:+12043 | Msa1361430:CDS |
TTCCACTTCCTGATCCAGCA+TGG | 0.553357 | tig0017497:-12226 | Msa1361430:intergenic |
TCAGGAGCAGATTCTGAAGC+CGG | 0.558363 | tig0017497:+12071 | Msa1361430:CDS |
TCCACTTCCTGATCCAGCAT+GGG | 0.559462 | tig0017497:-12225 | Msa1361430:intergenic |
ACGAGATCCTGCATGAGAGC+CGG | 0.567620 | tig0017497:-12030 | Msa1361430:intergenic |
CTGAAGCTGGTTCATATGCA+GGG | 0.570910 | tig0017497:+12201 | Msa1361430:CDS |
AGAGCAGCGAGAAAGGACCT+TGG | 0.580493 | tig0017497:+11831 | Msa1361430:CDS |
AGCGAGAAAGGACCTTGGGT+TGG | 0.600015 | tig0017497:+11836 | Msa1361430:CDS |
CTGAAGCCGGTTCATATGCA+GGG | 0.607921 | tig0017497:+12153 | Msa1361430:CDS |
CTCATGCAGGATCTCGTGCA+GGG | 0.622416 | tig0017497:+12036 | Msa1361430:CDS |
CACCACCCAAGTCCAACCCA+AGG | 0.633824 | tig0017497:-11848 | Msa1361420:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
ATGAGAACCTGCATATGAAC+CGG | - | tig0017497:12093-12112 | Msa1361430:intergenic | 40.0% | |
TGAAAGTAGAGCAGCGAGAA+AGG | + | tig0017497:11824-11843 | Msa1361430:CDS | 45.0% | |
!! | TTCTGGTTCTGCTTCAGGAT+CGG | + | tig0017497:11977-11996 | Msa1361430:CDS | 45.0% |
TCATATGCAGGTTCTCATGC+TGG | + | tig0017497:12095-12114 | Msa1361430:CDS | 45.0% | |
CATATGCAGGTTCTCATGCT+GGG | + | tig0017497:12096-12115 | Msa1361430:CDS | 45.0% | |
! | ATATGAACCGGCTTCAGAAC+CGG | - | tig0017497:12150-12169 | Msa1361430:intergenic | 45.0% |
ATGAGACCCTGCATATGAAC+CGG | - | tig0017497:12162-12181 | Msa1361430:intergenic | 45.0% | |
! | TCTGAAGCTGGTTCATATGC+AGG | + | tig0017497:12200-12219 | Msa1361430:CDS | 45.0% |
! | CTGAAGCTGGTTCATATGCA+GGG | + | tig0017497:12201-12220 | Msa1361430:CDS | 45.0% |
!! | AAAGGACCTTGGGTTGGACT+TGG | + | tig0017497:11842-11861 | Msa1361430:CDS | 50.0% |
!! | AAGGACCTTGGGTTGGACTT+GGG | + | tig0017497:11843-11862 | Msa1361430:CDS | 50.0% |
ACTTGGGTGGTGTGGGAATA+GGG | + | tig0017497:11859-11878 | Msa1361430:CDS | 50.0% | |
!! | TCTGGTTCTGGTTCTGCTTC+AGG | + | tig0017497:11972-11991 | Msa1361430:CDS | 50.0% |
!! | TCTGGTTCTGCTTCAGGATC+GGG | + | tig0017497:11978-11997 | Msa1361430:CDS | 50.0% |
!! | TCAGGAGCAGATTCTGAAGC+CGG | + | tig0017497:12071-12090 | Msa1361430:CDS | 50.0% |
! | TCTGAAGCCGGTTCATATGC+AGG | + | tig0017497:12083-12102 | Msa1361430:CDS | 50.0% |
! | TCTGAAGCCGGTTCATATGC+AGG | + | tig0017497:12083-12102 | Msa1361430:CDS | 50.0% |
! | CTGAAGCCGGTTCATATGCA+GGG | + | tig0017497:12084-12103 | Msa1361430:CDS | 50.0% |
TCATATGCAGGGTCTCATGC+TGG | + | tig0017497:12164-12183 | Msa1361430:CDS | 50.0% | |
CATATGCAGGGTCTCATGCT+GGG | + | tig0017497:12165-12184 | Msa1361430:CDS | 50.0% | |
TCCACTTCCTGATCCAGCAT+GGG | - | tig0017497:12228-12247 | Msa1361430:intergenic | 50.0% | |
TTCCACTTCCTGATCCAGCA+TGG | - | tig0017497:12229-12248 | Msa1361430:intergenic | 50.0% | |
AGAGCAGCGAGAAAGGACCT+TGG | + | tig0017497:11831-11850 | Msa1361430:CDS | 55.0% | |
GAGCAGCGAGAAAGGACCTT+GGG | + | tig0017497:11832-11851 | Msa1361430:CDS | 55.0% | |
AGCGAGAAAGGACCTTGGGT+TGG | + | tig0017497:11836-11855 | Msa1361430:CDS | 55.0% | |
GACTTGGGTGGTGTGGGAAT+AGG | + | tig0017497:11858-11877 | Msa1361430:CDS | 55.0% | |
GGTGGTGTGGGAATAGGGTT+GGG | + | tig0017497:11864-11883 | Msa1361430:CDS | 55.0% | |
!! | ATAGGGTTGGGTGCTGGTCT+AGG | + | tig0017497:11876-11895 | Msa1361430:CDS | 55.0% |
!! | TTGGGTGCTGGTCTAGGACT+TGG | + | tig0017497:11882-11901 | Msa1361430:CDS | 55.0% |
! | GCTGGTCTAGGACTTGGACT+TGG | + | tig0017497:11888-11907 | Msa1361430:CDS | 55.0% |
! | GGTCTAGGACTTGGACTTGG+TGG | + | tig0017497:11891-11910 | Msa1361430:CDS | 55.0% |
!! | CTAGGACTTGGACTTGGTGG+TGG | + | tig0017497:11894-11913 | Msa1361430:CDS | 55.0% |
! | GTCTGGTTCAGGGTCTGGTT+CGG | + | tig0017497:11947-11966 | Msa1361430:CDS | 55.0% |
! | TCTGGTTCAGGGTCTGGTTC+GGG | + | tig0017497:11948-11967 | Msa1361430:CDS | 55.0% |
!! | TCTGGTTCGGGTTCTGGTTC+TGG | + | tig0017497:11960-11979 | Msa1361430:CDS | 55.0% |
TCTGCTTCAGGATCGGGATC+AGG | + | tig0017497:11984-12003 | Msa1361430:CDS | 55.0% | |
CTGCTTCAGGATCGGGATCA+GGG | + | tig0017497:11985-12004 | Msa1361430:CDS | 55.0% | |
!! | TCTGGAGCTGGTTCTGAAGC+CGG | + | tig0017497:12011-12030 | Msa1361430:CDS | 55.0% |
ACGAGATCCTGCATGAGAGC+CGG | - | tig0017497:12033-12052 | Msa1361430:intergenic | 55.0% | |
TCTCATGCAGGATCTCGTGC+AGG | + | tig0017497:12035-12054 | Msa1361430:CDS | 55.0% | |
CTCATGCAGGATCTCGTGCA+GGG | + | tig0017497:12036-12055 | Msa1361430:CDS | 55.0% | |
CAGGTTCTCATGCTGGGTCA+GGG | + | tig0017497:12102-12121 | Msa1361430:CDS | 55.0% | |
! | TCTGGAGCAGGTTCAGAAGC+CGG | + | tig0017497:12128-12147 | Msa1361430:CDS | 55.0% |
!! | TCAGAAGCCGGTTCTGAAGC+CGG | + | tig0017497:12140-12159 | Msa1361430:CDS | 55.0% |
!! | TCAGGGTCTGGTTCTGAAGC+TGG | + | tig0017497:12188-12207 | Msa1361430:CDS | 55.0% |
TCATATGCAGGGTCCCATGC+TGG | + | tig0017497:12212-12231 | Msa1361430:CDS | 55.0% | |
TCCCATGCTGGATCAGGAAG+TGG | + | tig0017497:12224-12243 | Msa1361430:CDS | 55.0% | |
!! | GACCTTGGGTTGGACTTGGG+TGG | + | tig0017497:11846-11865 | Msa1361430:CDS | 60.0% |
CACCACCCAAGTCCAACCCA+AGG | - | tig0017497:11851-11870 | Msa1361430:intergenic | 60.0% | |
! | TGGGTTGGACTTGGGTGGTG+TGG | + | tig0017497:11851-11870 | Msa1361430:CDS | 60.0% |
GGGTTGGACTTGGGTGGTGT+GGG | + | tig0017497:11852-11871 | Msa1361430:CDS | 60.0% | |
GGGTGGTGTGGGAATAGGGT+TGG | + | tig0017497:11863-11882 | Msa1361430:CDS | 60.0% | |
GTGGGAATAGGGTTGGGTGC+TGG | + | tig0017497:11870-11889 | Msa1361430:CDS | 60.0% | |
!! | GGACTTGGACTTGGTGGTGG+TGG | + | tig0017497:11897-11916 | Msa1361430:CDS | 60.0% |
!! | CTTGGACTTGGTGGTGGTGG+TGG | + | tig0017497:11900-11919 | Msa1361430:CDS | 60.0% |
!! | TCAGGGTCTGGTTCGGGTTC+TGG | + | tig0017497:11954-11973 | Msa1361430:CDS | 60.0% |
GGATCGGGATCAGGGTCTTC+TGG | + | tig0017497:11993-12012 | Msa1361430:CDS | 60.0% | |
!! | GGATCAGGGTCTTCTGGAGC+TGG | + | tig0017497:11999-12018 | Msa1361430:CDS | 60.0% |
! | TCTGAAGCCGGCTCTCATGC+AGG | + | tig0017497:12023-12042 | Msa1361430:CDS | 60.0% |
CAGGATCTCGTGCAGGGTCA+GGG | + | tig0017497:12042-12061 | Msa1361430:CDS | 60.0% | |
AGGATCTCGTGCAGGGTCAG+GGG | + | tig0017497:12043-12062 | Msa1361430:CDS | 60.0% | |
GCAGGTTCTCATGCTGGGTC+AGG | + | tig0017497:12101-12120 | Msa1361430:CDS | 60.0% | |
CATGCTGGGTCAGGGTCTTC+TGG | + | tig0017497:12110-12129 | Msa1361430:CDS | 60.0% | |
CAGGGTCTCATGCTGGGTCA+GGG | + | tig0017497:12171-12190 | Msa1361430:CDS | 60.0% | |
TCTCATGCTGGGTCAGGGTC+TGG | + | tig0017497:12107-12126 | Msa1361430:CDS | 60.0% | |
!! | CTTGGTGGTGGTGGTGGTGC+TGG | + | tig0017497:11906-11925 | Msa1361430:CDS | 65.0% |
CCCTGAACCAGACCCTGCAC+CGG | - | tig0017497:11940-11959 | Msa1361430:intergenic | 65.0% | |
! | CCGGTGCAGGGTCTGGTTCA+GGG | + | tig0017497:11937-11956 | Msa1361430:CDS | 65.0% |
! | GCAGGGTCTGGTTCAGGGTC+TGG | + | tig0017497:11942-11961 | Msa1361430:CDS | 65.0% |
GCAGGATCTCGTGCAGGGTC+AGG | + | tig0017497:12041-12060 | Msa1361430:CDS | 65.0% | |
!! | GGGTCAGGGTCTTCTGGAGC+AGG | + | tig0017497:12116-12135 | Msa1361430:CDS | 65.0% |
GCAGGGTCTCATGCTGGGTC+AGG | + | tig0017497:12170-12189 | Msa1361430:CDS | 65.0% | |
GCAGGGTCCCATGCTGGATC+AGG | + | tig0017497:12218-12237 | Msa1361430:CDS | 65.0% | |
!! | GGTGGTGGTGGTGCTGGCTC+TGG | + | tig0017497:11912-11931 | Msa1361430:CDS | 70.0% |
!! | GGTGGTGCTGGCTCTGGTGC+CGG | + | tig0017497:11918-11937 | Msa1361430:CDS | 70.0% |
!! | CTGGCTCTGGTGCCGGTGCA+GGG | + | tig0017497:11925-11944 | Msa1361430:CDS | 70.0% |
!! | TCTGGTGCCGGTGCAGGGTC+TGG | + | tig0017497:11930-11949 | Msa1361430:CDS | 70.0% |
! | GCCGGTGCAGGGTCTGGTTC+AGG | + | tig0017497:11936-11955 | Msa1361430:CDS | 70.0% |
TCTCGTGCAGGGTCAGGGGC+TGG | + | tig0017497:12047-12066 | Msa1361430:CDS | 70.0% | |
CTCGTGCAGGGTCAGGGGCT+GGG | + | tig0017497:12048-12067 | Msa1361430:CDS | 70.0% | |
!! | GCTGGCTCTGGTGCCGGTGC+AGG | + | tig0017497:11924-11943 | Msa1361430:CDS | 75.0% |
GCAGGGTCAGGGGCTGGGTC+AGG | + | tig0017497:12053-12072 | Msa1361430:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0017497 | gene | 11762 | 12253 | 11762 | ID=Msa1361430;Name=Msa1361430 |
tig0017497 | mRNA | 11762 | 12253 | 11762 | ID=Msa1361430-mRNA-1;Parent=Msa1361430;Name=Msa1361430-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|163 |
tig0017497 | exon | 11762 | 12253 | 11762 | ID=Msa1361430-mRNA-1:exon:12394;Parent=Msa1361430-mRNA-1 |
tig0017497 | CDS | 11762 | 12253 | 11762 | ID=Msa1361430-mRNA-1:cds;Parent=Msa1361430-mRNA-1 |
Gene Sequence |
Protein sequence |