Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1197820 | Msa1222130 | 0.809099 | 2.236775e-50 | -8.615850e-47 |
| Msa1222130 | Msa1334050 | 0.992470 | 1.752423e-193 | -8.615850e-47 |
| Msa1222130 | Msa1361430 | 0.895448 | 9.490828e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTTGGGTGGTGTGGGAAT+AGG | 0.179418 | 8_1:+86332534 | Msa1222130:CDS |
| GCCGGTGCAGGGTCTGGTTC+AGG | 0.215595 | 8_1:+86332612 | Msa1222130:CDS |
| TCTGGTTCGGGTTCTGGTTC+TGG | 0.216048 | 8_1:+86332636 | Msa1222130:CDS |
| TCAGGGTCTGGTTCGGGTTC+TGG | 0.223414 | 8_1:+86332630 | Msa1222130:CDS |
| TCTATTTCTTGCATGTAATA+AGG | 0.237929 | 8_1:+86333088 | Msa1222130:three_prime_UTR |
| ACTTGGGTGGTGTGGGAATA+GGG | 0.241823 | 8_1:+86332535 | Msa1222130:CDS |
| GAACTTTATTATAATATATA+TGG | 0.256935 | 8_1:-86332942 | None:intergenic |
| TCTCGTGCAGGGTCAGGGGC+TGG | 0.277683 | 8_1:+86332723 | Msa1222130:CDS |
| GGTGGTGGTGGTGCTGGCTC+TGG | 0.298903 | 8_1:+86332588 | Msa1222130:CDS |
| GCTGGCTCTGGTGCCGGTGC+AGG | 0.301841 | 8_1:+86332600 | Msa1222130:CDS |
| ACGTTACCCTCTCTTGTTTA+GGG | 0.303893 | 8_1:+86333119 | Msa1222130:three_prime_UTR |
| GTCTGGTTCAGGGTCTGGTT+CGG | 0.312395 | 8_1:+86332623 | Msa1222130:CDS |
| TCTGGTTCAGGGTCTGGTTC+GGG | 0.325239 | 8_1:+86332624 | Msa1222130:CDS |
| TACGTTACCCTCTCTTGTTT+AGG | 0.327543 | 8_1:+86333118 | Msa1222130:three_prime_UTR |
| GCAGGATCTCGTGCAGGGTC+AGG | 0.327834 | 8_1:+86332717 | Msa1222130:CDS |
| GCAGGGTCTCATGCTGGGTC+AGG | 0.339790 | 8_1:+86332846 | Msa1222130:intron |
| ATAGGGTTGGGTGCTGGTCT+AGG | 0.348841 | 8_1:+86332552 | Msa1222130:CDS |
| GCAGGGTCTGGTTCAGGGTC+TGG | 0.350841 | 8_1:+86332618 | Msa1222130:CDS |
| TCTCATGCTGGGTCAGGGTC+TGG | 0.360214 | 8_1:+86332852 | Msa1222130:CDS |
| GGATCGGGATCAGGGTCTTC+TGG | 0.361785 | 8_1:+86332669 | Msa1222130:intron |
| CTCGTGCAGGGTCAGGGGCT+GGG | 0.364749 | 8_1:+86332724 | Msa1222130:CDS |
| GCAGGGTCAGGGGCTGGGTC+AGG | 0.366905 | 8_1:+86332729 | Msa1222130:CDS |
| TCAGGGTCTGGTTCTGAAGC+TGG | 0.377186 | 8_1:+86332864 | Msa1222130:CDS |
| TCATATGCAGGGTCTCATGC+TGG | 0.384968 | 8_1:+86332840 | Msa1222130:intron |
| TCTGGTGCCGGTGCAGGGTC+TGG | 0.387411 | 8_1:+86332606 | Msa1222130:CDS |
| AAAGGACCTTGGGTTGGACT+TGG | 0.389761 | 8_1:+86332518 | Msa1222130:CDS |
| TTGGGTGCTGGTCTAGGACT+TGG | 0.390919 | 8_1:+86332558 | Msa1222130:CDS |
| TCTGCTTCAGGATCGGGATC+AGG | 0.391270 | 8_1:+86332660 | Msa1222130:intron |
| TGGGTTGGACTTGGGTGGTG+TGG | 0.397876 | 8_1:+86332527 | Msa1222130:CDS |
| CTTGGACTTGGTGGTGGTGG+TGG | 0.399016 | 8_1:+86332576 | Msa1222130:CDS |
| GGGTTGGACTTGGGTGGTGT+GGG | 0.411811 | 8_1:+86332528 | Msa1222130:CDS |
| CCGGTGCAGGGTCTGGTTCA+GGG | 0.417735 | 8_1:+86332613 | Msa1222130:CDS |
| CAGGATCTCGTGCAGGGTCA+GGG | 0.422958 | 8_1:+86332718 | Msa1222130:CDS |
| GGGTGGTGTGGGAATAGGGT+TGG | 0.424884 | 8_1:+86332539 | Msa1222130:CDS |
| GTGGGAATAGGGTTGGGTGC+TGG | 0.428348 | 8_1:+86332546 | Msa1222130:CDS |
| TCTGAAGCTGGTTCATATGC+AGG | 0.430821 | 8_1:+86332876 | Msa1222130:CDS |
| GGTGGTGCTGGCTCTGGTGC+CGG | 0.433528 | 8_1:+86332594 | Msa1222130:CDS |
| GCTGGTCTAGGACTTGGACT+TGG | 0.437253 | 8_1:+86332564 | Msa1222130:CDS |
| GGACTTGGACTTGGTGGTGG+TGG | 0.442166 | 8_1:+86332573 | Msa1222130:CDS |
| CTGGCTCTGGTGCCGGTGCA+GGG | 0.443610 | 8_1:+86332601 | Msa1222130:CDS |
| GCAGGGTCCCATGCTGGATC+AGG | 0.455555 | 8_1:+86332894 | Msa1222130:CDS |
| TCATATGCAGGGTCCCATGC+TGG | 0.457998 | 8_1:+86332888 | Msa1222130:CDS |
| TCTCATGCAGGATCTCGTGC+AGG | 0.458538 | 8_1:+86332711 | Msa1222130:CDS |
| CTAGGACTTGGACTTGGTGG+TGG | 0.462464 | 8_1:+86332570 | Msa1222130:CDS |
| GGATCAGGGTCTTCTGGAGC+TGG | 0.463140 | 8_1:+86332675 | Msa1222130:CDS |
| TCTGAAGCCGGTTCATATGC+AGG | 0.467588 | 8_1:+86332759 | Msa1222130:CDS |
| TGAAAGTAGAGCAGCGAGAA+AGG | 0.468232 | 8_1:+86332500 | Msa1222130:CDS |
| GGTGGTGTGGGAATAGGGTT+GGG | 0.480105 | 8_1:+86332540 | Msa1222130:CDS |
| GAGCAGCGAGAAAGGACCTT+GGG | 0.484360 | 8_1:+86332508 | Msa1222130:CDS |
| CAGGGTCTCATGCTGGGTCA+GGG | 0.484638 | 8_1:+86332847 | Msa1222130:intron |
| GGTCTAGGACTTGGACTTGG+TGG | 0.486657 | 8_1:+86332567 | Msa1222130:CDS |
| TCTGGAGCTGGTTCTGAAGC+CGG | 0.491049 | 8_1:+86332687 | Msa1222130:CDS |
| AAGGACCTTGGGTTGGACTT+GGG | 0.494177 | 8_1:+86332519 | Msa1222130:CDS |
| ATGAGAACCTGCATATGAAC+CGG | 0.496137 | 8_1:-86332766 | None:intergenic |
| TCTGAAGCCGGCTCTCATGC+AGG | 0.510342 | 8_1:+86332699 | Msa1222130:CDS |
| CATATGCAGGGTCTCATGCT+GGG | 0.511139 | 8_1:+86332841 | Msa1222130:intron |
| ATTACATGCAAGAAATAGAA+AGG | 0.511275 | 8_1:-86333084 | None:intergenic |
| CTGCTTCAGGATCGGGATCA+GGG | 0.517642 | 8_1:+86332661 | Msa1222130:intron |
| TGGACACATGCATATATAAG+AGG | 0.528813 | 8_1:-86333042 | None:intergenic |
| GACCTTGGGTTGGACTTGGG+TGG | 0.531909 | 8_1:+86332522 | Msa1222130:CDS |
| TCCCATGCTGGATCAGGAAG+TGG | 0.533422 | 8_1:+86332900 | Msa1222130:CDS |
| CGTTACCCTCTCTTGTTTAG+GGG | 0.542020 | 8_1:+86333120 | Msa1222130:three_prime_UTR |
| CCCTGAACCAGACCCTGCAC+CGG | 0.544836 | 8_1:-86332613 | None:intergenic |
| AGGATCTCGTGCAGGGTCAG+GGG | 0.549900 | 8_1:+86332719 | Msa1222130:CDS |
| TTCCACTTCCTGATCCAGCA+TGG | 0.553357 | 8_1:-86332902 | None:intergenic |
| TCAGGAGCAGATTCTGAAGC+CGG | 0.558363 | 8_1:+86332747 | Msa1222130:CDS |
| TCCACTTCCTGATCCAGCAT+GGG | 0.559462 | 8_1:-86332901 | None:intergenic |
| ACGAGATCCTGCATGAGAGC+CGG | 0.567620 | 8_1:-86332706 | None:intergenic |
| CTGAAGCTGGTTCATATGCA+GGG | 0.570910 | 8_1:+86332877 | Msa1222130:CDS |
| AGAGCAGCGAGAAAGGACCT+TGG | 0.580493 | 8_1:+86332507 | Msa1222130:CDS |
| GTTACCCTCTCTTGTTTAGG+GGG | 0.598875 | 8_1:+86333121 | Msa1222130:three_prime_UTR |
| AGCGAGAAAGGACCTTGGGT+TGG | 0.600015 | 8_1:+86332512 | Msa1222130:CDS |
| CTCATGCAGGATCTCGTGCA+GGG | 0.622416 | 8_1:+86332712 | Msa1222130:CDS |
| CACCACCCAAGTCCAACCCA+AGG | 0.633824 | 8_1:-86332524 | None:intergenic |
| TAATCATCATCAGATAGTGA+AGG | 0.660205 | 8_1:-86332966 | None:intergenic |
| GAAGAAACAATATTACACGA+TGG | 0.686822 | 8_1:-86333062 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAACTTTATTATAATATATA+TGG | - | chr8_1:86332945-86332964 | None:intergenic | 10.0% |
| !! | GAACTTTATTATAATATATA+TGG | - | chr8_1:86332945-86332964 | None:intergenic | 10.0% |
| !!! | TATGCATATTACATTTTGAT+TGG | - | chr8_1:86333170-86333189 | None:intergenic | 20.0% |
| !!! | TATGCATATTACATTTTGAT+TGG | - | chr8_1:86333170-86333189 | None:intergenic | 20.0% |
| ! | ATTACATGCAAGAAATAGAA+AGG | - | chr8_1:86333087-86333106 | None:intergenic | 25.0% |
| !! | TCTATTTCTTGCATGTAATA+AGG | + | chr8_1:86333088-86333107 | Msa1222130:three_prime_UTR | 25.0% |
| ! | ATTACATGCAAGAAATAGAA+AGG | - | chr8_1:86333087-86333106 | None:intergenic | 25.0% |
| !! | TCTATTTCTTGCATGTAATA+AGG | + | chr8_1:86333088-86333107 | Msa1222130:three_prime_UTR | 25.0% |
| TAATCATCATCAGATAGTGA+AGG | - | chr8_1:86332969-86332988 | None:intergenic | 30.0% | |
| GAAGAAACAATATTACACGA+TGG | - | chr8_1:86333065-86333084 | None:intergenic | 30.0% | |
| TAATCATCATCAGATAGTGA+AGG | - | chr8_1:86332969-86332988 | None:intergenic | 30.0% | |
| GAAGAAACAATATTACACGA+TGG | - | chr8_1:86333065-86333084 | None:intergenic | 30.0% | |
| TGGACACATGCATATATAAG+AGG | - | chr8_1:86333045-86333064 | None:intergenic | 35.0% | |
| TGGACACATGCATATATAAG+AGG | - | chr8_1:86333045-86333064 | None:intergenic | 35.0% | |
| ATGAGAACCTGCATATGAAC+CGG | - | chr8_1:86332769-86332788 | None:intergenic | 40.0% | |
| ! | TACGTTACCCTCTCTTGTTT+AGG | + | chr8_1:86333118-86333137 | Msa1222130:three_prime_UTR | 40.0% |
| ! | ACGTTACCCTCTCTTGTTTA+GGG | + | chr8_1:86333119-86333138 | Msa1222130:three_prime_UTR | 40.0% |
| ATTACCCCCTAAACAAGAGA+GGG | - | chr8_1:86333128-86333147 | None:intergenic | 40.0% | |
| AATTACCCCCTAAACAAGAG+AGG | - | chr8_1:86333129-86333148 | None:intergenic | 40.0% | |
| ATGAGAACCTGCATATGAAC+CGG | - | chr8_1:86332769-86332788 | None:intergenic | 40.0% | |
| ! | TACGTTACCCTCTCTTGTTT+AGG | + | chr8_1:86333118-86333137 | Msa1222130:three_prime_UTR | 40.0% |
| ! | ACGTTACCCTCTCTTGTTTA+GGG | + | chr8_1:86333119-86333138 | Msa1222130:three_prime_UTR | 40.0% |
| ATTACCCCCTAAACAAGAGA+GGG | - | chr8_1:86333128-86333147 | None:intergenic | 40.0% | |
| AATTACCCCCTAAACAAGAG+AGG | - | chr8_1:86333129-86333148 | None:intergenic | 40.0% | |
| TGAAAGTAGAGCAGCGAGAA+AGG | + | chr8_1:86332500-86332519 | Msa1222130:CDS | 45.0% | |
| !! | TTCTGGTTCTGCTTCAGGAT+CGG | + | chr8_1:86332653-86332672 | Msa1222130:intron | 45.0% |
| TCATATGCAGGTTCTCATGC+TGG | + | chr8_1:86332771-86332790 | Msa1222130:intron | 45.0% | |
| CATATGCAGGTTCTCATGCT+GGG | + | chr8_1:86332772-86332791 | Msa1222130:intron | 45.0% | |
| ! | ATATGAACCGGCTTCAGAAC+CGG | - | chr8_1:86332826-86332845 | None:intergenic | 45.0% |
| ATGAGACCCTGCATATGAAC+CGG | - | chr8_1:86332838-86332857 | None:intergenic | 45.0% | |
| ! | TCTGAAGCTGGTTCATATGC+AGG | + | chr8_1:86332876-86332895 | Msa1222130:CDS | 45.0% |
| ! | CTGAAGCTGGTTCATATGCA+GGG | + | chr8_1:86332877-86332896 | Msa1222130:CDS | 45.0% |
| ! | CGTTACCCTCTCTTGTTTAG+GGG | + | chr8_1:86333120-86333139 | Msa1222130:three_prime_UTR | 45.0% |
| ! | GTTACCCTCTCTTGTTTAGG+GGG | + | chr8_1:86333121-86333140 | Msa1222130:three_prime_UTR | 45.0% |
| TGAAAGTAGAGCAGCGAGAA+AGG | + | chr8_1:86332500-86332519 | Msa1222130:CDS | 45.0% | |
| !! | TTCTGGTTCTGCTTCAGGAT+CGG | + | chr8_1:86332653-86332672 | Msa1222130:intron | 45.0% |
| TCATATGCAGGTTCTCATGC+TGG | + | chr8_1:86332771-86332790 | Msa1222130:intron | 45.0% | |
| CATATGCAGGTTCTCATGCT+GGG | + | chr8_1:86332772-86332791 | Msa1222130:intron | 45.0% | |
| ! | ATATGAACCGGCTTCAGAAC+CGG | - | chr8_1:86332826-86332845 | None:intergenic | 45.0% |
| ATGAGACCCTGCATATGAAC+CGG | - | chr8_1:86332838-86332857 | None:intergenic | 45.0% | |
| ! | TCTGAAGCTGGTTCATATGC+AGG | + | chr8_1:86332876-86332895 | Msa1222130:CDS | 45.0% |
| ! | CTGAAGCTGGTTCATATGCA+GGG | + | chr8_1:86332877-86332896 | Msa1222130:CDS | 45.0% |
| ! | CGTTACCCTCTCTTGTTTAG+GGG | + | chr8_1:86333120-86333139 | Msa1222130:three_prime_UTR | 45.0% |
| ! | GTTACCCTCTCTTGTTTAGG+GGG | + | chr8_1:86333121-86333140 | Msa1222130:three_prime_UTR | 45.0% |
| !! | AAAGGACCTTGGGTTGGACT+TGG | + | chr8_1:86332518-86332537 | Msa1222130:CDS | 50.0% |
| !! | AAGGACCTTGGGTTGGACTT+GGG | + | chr8_1:86332519-86332538 | Msa1222130:CDS | 50.0% |
| ACTTGGGTGGTGTGGGAATA+GGG | + | chr8_1:86332535-86332554 | Msa1222130:CDS | 50.0% | |
| !! | TCTGGTTCTGGTTCTGCTTC+AGG | + | chr8_1:86332648-86332667 | Msa1222130:intron | 50.0% |
| !! | TCTGGTTCTGCTTCAGGATC+GGG | + | chr8_1:86332654-86332673 | Msa1222130:intron | 50.0% |
| !! | TCAGGAGCAGATTCTGAAGC+CGG | + | chr8_1:86332747-86332766 | Msa1222130:CDS | 50.0% |
| ! | TCTGAAGCCGGTTCATATGC+AGG | + | chr8_1:86332759-86332778 | Msa1222130:CDS | 50.0% |
| ! | TCTGAAGCCGGTTCATATGC+AGG | + | chr8_1:86332759-86332778 | Msa1222130:CDS | 50.0% |
| ! | CTGAAGCCGGTTCATATGCA+GGG | + | chr8_1:86332760-86332779 | Msa1222130:CDS | 50.0% |
| TCATATGCAGGGTCTCATGC+TGG | + | chr8_1:86332840-86332859 | Msa1222130:intron | 50.0% | |
| CATATGCAGGGTCTCATGCT+GGG | + | chr8_1:86332841-86332860 | Msa1222130:intron | 50.0% | |
| TCCACTTCCTGATCCAGCAT+GGG | - | chr8_1:86332904-86332923 | None:intergenic | 50.0% | |
| TTCCACTTCCTGATCCAGCA+TGG | - | chr8_1:86332905-86332924 | None:intergenic | 50.0% | |
| !! | AAAGGACCTTGGGTTGGACT+TGG | + | chr8_1:86332518-86332537 | Msa1222130:CDS | 50.0% |
| !! | AAGGACCTTGGGTTGGACTT+GGG | + | chr8_1:86332519-86332538 | Msa1222130:CDS | 50.0% |
| ACTTGGGTGGTGTGGGAATA+GGG | + | chr8_1:86332535-86332554 | Msa1222130:CDS | 50.0% | |
| !! | TCTGGTTCTGGTTCTGCTTC+AGG | + | chr8_1:86332648-86332667 | Msa1222130:intron | 50.0% |
| !! | TCTGGTTCTGCTTCAGGATC+GGG | + | chr8_1:86332654-86332673 | Msa1222130:intron | 50.0% |
| !! | TCAGGAGCAGATTCTGAAGC+CGG | + | chr8_1:86332747-86332766 | Msa1222130:CDS | 50.0% |
| ! | TCTGAAGCCGGTTCATATGC+AGG | + | chr8_1:86332759-86332778 | Msa1222130:CDS | 50.0% |
| ! | TCTGAAGCCGGTTCATATGC+AGG | + | chr8_1:86332759-86332778 | Msa1222130:CDS | 50.0% |
| ! | CTGAAGCCGGTTCATATGCA+GGG | + | chr8_1:86332760-86332779 | Msa1222130:CDS | 50.0% |
| TCATATGCAGGGTCTCATGC+TGG | + | chr8_1:86332840-86332859 | Msa1222130:intron | 50.0% | |
| CATATGCAGGGTCTCATGCT+GGG | + | chr8_1:86332841-86332860 | Msa1222130:intron | 50.0% | |
| TCCACTTCCTGATCCAGCAT+GGG | - | chr8_1:86332904-86332923 | None:intergenic | 50.0% | |
| TTCCACTTCCTGATCCAGCA+TGG | - | chr8_1:86332905-86332924 | None:intergenic | 50.0% | |
| AGAGCAGCGAGAAAGGACCT+TGG | + | chr8_1:86332507-86332526 | Msa1222130:CDS | 55.0% | |
| GAGCAGCGAGAAAGGACCTT+GGG | + | chr8_1:86332508-86332527 | Msa1222130:CDS | 55.0% | |
| AGCGAGAAAGGACCTTGGGT+TGG | + | chr8_1:86332512-86332531 | Msa1222130:CDS | 55.0% | |
| GACTTGGGTGGTGTGGGAAT+AGG | + | chr8_1:86332534-86332553 | Msa1222130:CDS | 55.0% | |
| GGTGGTGTGGGAATAGGGTT+GGG | + | chr8_1:86332540-86332559 | Msa1222130:CDS | 55.0% | |
| !! | ATAGGGTTGGGTGCTGGTCT+AGG | + | chr8_1:86332552-86332571 | Msa1222130:CDS | 55.0% |
| !! | TTGGGTGCTGGTCTAGGACT+TGG | + | chr8_1:86332558-86332577 | Msa1222130:CDS | 55.0% |
| ! | GCTGGTCTAGGACTTGGACT+TGG | + | chr8_1:86332564-86332583 | Msa1222130:CDS | 55.0% |
| ! | GGTCTAGGACTTGGACTTGG+TGG | + | chr8_1:86332567-86332586 | Msa1222130:CDS | 55.0% |
| !! | CTAGGACTTGGACTTGGTGG+TGG | + | chr8_1:86332570-86332589 | Msa1222130:CDS | 55.0% |
| ! | GTCTGGTTCAGGGTCTGGTT+CGG | + | chr8_1:86332623-86332642 | Msa1222130:CDS | 55.0% |
| ! | TCTGGTTCAGGGTCTGGTTC+GGG | + | chr8_1:86332624-86332643 | Msa1222130:CDS | 55.0% |
| !! | TCTGGTTCGGGTTCTGGTTC+TGG | + | chr8_1:86332636-86332655 | Msa1222130:CDS | 55.0% |
| TCTGCTTCAGGATCGGGATC+AGG | + | chr8_1:86332660-86332679 | Msa1222130:intron | 55.0% | |
| CTGCTTCAGGATCGGGATCA+GGG | + | chr8_1:86332661-86332680 | Msa1222130:intron | 55.0% | |
| !! | TCTGGAGCTGGTTCTGAAGC+CGG | + | chr8_1:86332687-86332706 | Msa1222130:CDS | 55.0% |
| ACGAGATCCTGCATGAGAGC+CGG | - | chr8_1:86332709-86332728 | None:intergenic | 55.0% | |
| TCTCATGCAGGATCTCGTGC+AGG | + | chr8_1:86332711-86332730 | Msa1222130:CDS | 55.0% | |
| CTCATGCAGGATCTCGTGCA+GGG | + | chr8_1:86332712-86332731 | Msa1222130:CDS | 55.0% | |
| CAGGTTCTCATGCTGGGTCA+GGG | + | chr8_1:86332778-86332797 | Msa1222130:intron | 55.0% | |
| ! | TCTGGAGCAGGTTCAGAAGC+CGG | + | chr8_1:86332804-86332823 | Msa1222130:intron | 55.0% |
| !! | TCAGAAGCCGGTTCTGAAGC+CGG | + | chr8_1:86332816-86332835 | Msa1222130:intron | 55.0% |
| !! | TCAGGGTCTGGTTCTGAAGC+TGG | + | chr8_1:86332864-86332883 | Msa1222130:CDS | 55.0% |
| TCATATGCAGGGTCCCATGC+TGG | + | chr8_1:86332888-86332907 | Msa1222130:CDS | 55.0% | |
| TCCCATGCTGGATCAGGAAG+TGG | + | chr8_1:86332900-86332919 | Msa1222130:CDS | 55.0% | |
| AGAGCAGCGAGAAAGGACCT+TGG | + | chr8_1:86332507-86332526 | Msa1222130:CDS | 55.0% | |
| GAGCAGCGAGAAAGGACCTT+GGG | + | chr8_1:86332508-86332527 | Msa1222130:CDS | 55.0% | |
| AGCGAGAAAGGACCTTGGGT+TGG | + | chr8_1:86332512-86332531 | Msa1222130:CDS | 55.0% | |
| GACTTGGGTGGTGTGGGAAT+AGG | + | chr8_1:86332534-86332553 | Msa1222130:CDS | 55.0% | |
| GGTGGTGTGGGAATAGGGTT+GGG | + | chr8_1:86332540-86332559 | Msa1222130:CDS | 55.0% | |
| !! | ATAGGGTTGGGTGCTGGTCT+AGG | + | chr8_1:86332552-86332571 | Msa1222130:CDS | 55.0% |
| !! | TTGGGTGCTGGTCTAGGACT+TGG | + | chr8_1:86332558-86332577 | Msa1222130:CDS | 55.0% |
| ! | GCTGGTCTAGGACTTGGACT+TGG | + | chr8_1:86332564-86332583 | Msa1222130:CDS | 55.0% |
| ! | GGTCTAGGACTTGGACTTGG+TGG | + | chr8_1:86332567-86332586 | Msa1222130:CDS | 55.0% |
| !! | CTAGGACTTGGACTTGGTGG+TGG | + | chr8_1:86332570-86332589 | Msa1222130:CDS | 55.0% |
| ! | GTCTGGTTCAGGGTCTGGTT+CGG | + | chr8_1:86332623-86332642 | Msa1222130:CDS | 55.0% |
| ! | TCTGGTTCAGGGTCTGGTTC+GGG | + | chr8_1:86332624-86332643 | Msa1222130:CDS | 55.0% |
| !! | TCTGGTTCGGGTTCTGGTTC+TGG | + | chr8_1:86332636-86332655 | Msa1222130:CDS | 55.0% |
| TCTGCTTCAGGATCGGGATC+AGG | + | chr8_1:86332660-86332679 | Msa1222130:intron | 55.0% | |
| CTGCTTCAGGATCGGGATCA+GGG | + | chr8_1:86332661-86332680 | Msa1222130:intron | 55.0% | |
| !! | TCTGGAGCTGGTTCTGAAGC+CGG | + | chr8_1:86332687-86332706 | Msa1222130:CDS | 55.0% |
| ACGAGATCCTGCATGAGAGC+CGG | - | chr8_1:86332709-86332728 | None:intergenic | 55.0% | |
| TCTCATGCAGGATCTCGTGC+AGG | + | chr8_1:86332711-86332730 | Msa1222130:CDS | 55.0% | |
| CTCATGCAGGATCTCGTGCA+GGG | + | chr8_1:86332712-86332731 | Msa1222130:CDS | 55.0% | |
| CAGGTTCTCATGCTGGGTCA+GGG | + | chr8_1:86332778-86332797 | Msa1222130:intron | 55.0% | |
| ! | TCTGGAGCAGGTTCAGAAGC+CGG | + | chr8_1:86332804-86332823 | Msa1222130:intron | 55.0% |
| !! | TCAGAAGCCGGTTCTGAAGC+CGG | + | chr8_1:86332816-86332835 | Msa1222130:intron | 55.0% |
| !! | TCAGGGTCTGGTTCTGAAGC+TGG | + | chr8_1:86332864-86332883 | Msa1222130:CDS | 55.0% |
| TCATATGCAGGGTCCCATGC+TGG | + | chr8_1:86332888-86332907 | Msa1222130:CDS | 55.0% | |
| TCCCATGCTGGATCAGGAAG+TGG | + | chr8_1:86332900-86332919 | Msa1222130:CDS | 55.0% | |
| !! | GACCTTGGGTTGGACTTGGG+TGG | + | chr8_1:86332522-86332541 | Msa1222130:CDS | 60.0% |
| CACCACCCAAGTCCAACCCA+AGG | - | chr8_1:86332527-86332546 | None:intergenic | 60.0% | |
| ! | TGGGTTGGACTTGGGTGGTG+TGG | + | chr8_1:86332527-86332546 | Msa1222130:CDS | 60.0% |
| GGGTTGGACTTGGGTGGTGT+GGG | + | chr8_1:86332528-86332547 | Msa1222130:CDS | 60.0% | |
| GGGTGGTGTGGGAATAGGGT+TGG | + | chr8_1:86332539-86332558 | Msa1222130:CDS | 60.0% | |
| GTGGGAATAGGGTTGGGTGC+TGG | + | chr8_1:86332546-86332565 | Msa1222130:CDS | 60.0% | |
| !! | GGACTTGGACTTGGTGGTGG+TGG | + | chr8_1:86332573-86332592 | Msa1222130:CDS | 60.0% |
| !! | CTTGGACTTGGTGGTGGTGG+TGG | + | chr8_1:86332576-86332595 | Msa1222130:CDS | 60.0% |
| !! | TCAGGGTCTGGTTCGGGTTC+TGG | + | chr8_1:86332630-86332649 | Msa1222130:CDS | 60.0% |
| GGATCGGGATCAGGGTCTTC+TGG | + | chr8_1:86332669-86332688 | Msa1222130:intron | 60.0% | |
| !! | GGATCAGGGTCTTCTGGAGC+TGG | + | chr8_1:86332675-86332694 | Msa1222130:CDS | 60.0% |
| ! | TCTGAAGCCGGCTCTCATGC+AGG | + | chr8_1:86332699-86332718 | Msa1222130:CDS | 60.0% |
| CAGGATCTCGTGCAGGGTCA+GGG | + | chr8_1:86332718-86332737 | Msa1222130:CDS | 60.0% | |
| AGGATCTCGTGCAGGGTCAG+GGG | + | chr8_1:86332719-86332738 | Msa1222130:CDS | 60.0% | |
| GCAGGTTCTCATGCTGGGTC+AGG | + | chr8_1:86332777-86332796 | Msa1222130:intron | 60.0% | |
| CATGCTGGGTCAGGGTCTTC+TGG | + | chr8_1:86332786-86332805 | Msa1222130:intron | 60.0% | |
| CAGGGTCTCATGCTGGGTCA+GGG | + | chr8_1:86332847-86332866 | Msa1222130:intron | 60.0% | |
| TCTCATGCTGGGTCAGGGTC+TGG | + | chr8_1:86332783-86332802 | Msa1222130:intron | 60.0% | |
| !! | GACCTTGGGTTGGACTTGGG+TGG | + | chr8_1:86332522-86332541 | Msa1222130:CDS | 60.0% |
| CACCACCCAAGTCCAACCCA+AGG | - | chr8_1:86332527-86332546 | None:intergenic | 60.0% | |
| ! | TGGGTTGGACTTGGGTGGTG+TGG | + | chr8_1:86332527-86332546 | Msa1222130:CDS | 60.0% |
| GGGTTGGACTTGGGTGGTGT+GGG | + | chr8_1:86332528-86332547 | Msa1222130:CDS | 60.0% | |
| GGGTGGTGTGGGAATAGGGT+TGG | + | chr8_1:86332539-86332558 | Msa1222130:CDS | 60.0% | |
| GTGGGAATAGGGTTGGGTGC+TGG | + | chr8_1:86332546-86332565 | Msa1222130:CDS | 60.0% | |
| !! | GGACTTGGACTTGGTGGTGG+TGG | + | chr8_1:86332573-86332592 | Msa1222130:CDS | 60.0% |
| !! | CTTGGACTTGGTGGTGGTGG+TGG | + | chr8_1:86332576-86332595 | Msa1222130:CDS | 60.0% |
| !! | TCAGGGTCTGGTTCGGGTTC+TGG | + | chr8_1:86332630-86332649 | Msa1222130:CDS | 60.0% |
| GGATCGGGATCAGGGTCTTC+TGG | + | chr8_1:86332669-86332688 | Msa1222130:intron | 60.0% | |
| !! | GGATCAGGGTCTTCTGGAGC+TGG | + | chr8_1:86332675-86332694 | Msa1222130:CDS | 60.0% |
| ! | TCTGAAGCCGGCTCTCATGC+AGG | + | chr8_1:86332699-86332718 | Msa1222130:CDS | 60.0% |
| CAGGATCTCGTGCAGGGTCA+GGG | + | chr8_1:86332718-86332737 | Msa1222130:CDS | 60.0% | |
| AGGATCTCGTGCAGGGTCAG+GGG | + | chr8_1:86332719-86332738 | Msa1222130:CDS | 60.0% | |
| GCAGGTTCTCATGCTGGGTC+AGG | + | chr8_1:86332777-86332796 | Msa1222130:intron | 60.0% | |
| CATGCTGGGTCAGGGTCTTC+TGG | + | chr8_1:86332786-86332805 | Msa1222130:intron | 60.0% | |
| CAGGGTCTCATGCTGGGTCA+GGG | + | chr8_1:86332847-86332866 | Msa1222130:intron | 60.0% | |
| TCTCATGCTGGGTCAGGGTC+TGG | + | chr8_1:86332783-86332802 | Msa1222130:intron | 60.0% | |
| !! | CTTGGTGGTGGTGGTGGTGC+TGG | + | chr8_1:86332582-86332601 | Msa1222130:CDS | 65.0% |
| CCCTGAACCAGACCCTGCAC+CGG | - | chr8_1:86332616-86332635 | None:intergenic | 65.0% | |
| ! | CCGGTGCAGGGTCTGGTTCA+GGG | + | chr8_1:86332613-86332632 | Msa1222130:CDS | 65.0% |
| ! | GCAGGGTCTGGTTCAGGGTC+TGG | + | chr8_1:86332618-86332637 | Msa1222130:CDS | 65.0% |
| GCAGGATCTCGTGCAGGGTC+AGG | + | chr8_1:86332717-86332736 | Msa1222130:CDS | 65.0% | |
| !! | GGGTCAGGGTCTTCTGGAGC+AGG | + | chr8_1:86332792-86332811 | Msa1222130:intron | 65.0% |
| GCAGGGTCTCATGCTGGGTC+AGG | + | chr8_1:86332846-86332865 | Msa1222130:intron | 65.0% | |
| GCAGGGTCCCATGCTGGATC+AGG | + | chr8_1:86332894-86332913 | Msa1222130:CDS | 65.0% | |
| !! | CTTGGTGGTGGTGGTGGTGC+TGG | + | chr8_1:86332582-86332601 | Msa1222130:CDS | 65.0% |
| CCCTGAACCAGACCCTGCAC+CGG | - | chr8_1:86332616-86332635 | None:intergenic | 65.0% | |
| ! | CCGGTGCAGGGTCTGGTTCA+GGG | + | chr8_1:86332613-86332632 | Msa1222130:CDS | 65.0% |
| ! | GCAGGGTCTGGTTCAGGGTC+TGG | + | chr8_1:86332618-86332637 | Msa1222130:CDS | 65.0% |
| GCAGGATCTCGTGCAGGGTC+AGG | + | chr8_1:86332717-86332736 | Msa1222130:CDS | 65.0% | |
| !! | GGGTCAGGGTCTTCTGGAGC+AGG | + | chr8_1:86332792-86332811 | Msa1222130:intron | 65.0% |
| GCAGGGTCTCATGCTGGGTC+AGG | + | chr8_1:86332846-86332865 | Msa1222130:intron | 65.0% | |
| GCAGGGTCCCATGCTGGATC+AGG | + | chr8_1:86332894-86332913 | Msa1222130:CDS | 65.0% | |
| !! | GGTGGTGGTGGTGCTGGCTC+TGG | + | chr8_1:86332588-86332607 | Msa1222130:CDS | 70.0% |
| !! | GGTGGTGCTGGCTCTGGTGC+CGG | + | chr8_1:86332594-86332613 | Msa1222130:CDS | 70.0% |
| !! | CTGGCTCTGGTGCCGGTGCA+GGG | + | chr8_1:86332601-86332620 | Msa1222130:CDS | 70.0% |
| !! | TCTGGTGCCGGTGCAGGGTC+TGG | + | chr8_1:86332606-86332625 | Msa1222130:CDS | 70.0% |
| ! | GCCGGTGCAGGGTCTGGTTC+AGG | + | chr8_1:86332612-86332631 | Msa1222130:CDS | 70.0% |
| TCTCGTGCAGGGTCAGGGGC+TGG | + | chr8_1:86332723-86332742 | Msa1222130:CDS | 70.0% | |
| CTCGTGCAGGGTCAGGGGCT+GGG | + | chr8_1:86332724-86332743 | Msa1222130:CDS | 70.0% | |
| !! | GGTGGTGGTGGTGCTGGCTC+TGG | + | chr8_1:86332588-86332607 | Msa1222130:CDS | 70.0% |
| !! | GGTGGTGCTGGCTCTGGTGC+CGG | + | chr8_1:86332594-86332613 | Msa1222130:CDS | 70.0% |
| !! | CTGGCTCTGGTGCCGGTGCA+GGG | + | chr8_1:86332601-86332620 | Msa1222130:CDS | 70.0% |
| !! | TCTGGTGCCGGTGCAGGGTC+TGG | + | chr8_1:86332606-86332625 | Msa1222130:CDS | 70.0% |
| ! | GCCGGTGCAGGGTCTGGTTC+AGG | + | chr8_1:86332612-86332631 | Msa1222130:CDS | 70.0% |
| TCTCGTGCAGGGTCAGGGGC+TGG | + | chr8_1:86332723-86332742 | Msa1222130:CDS | 70.0% | |
| CTCGTGCAGGGTCAGGGGCT+GGG | + | chr8_1:86332724-86332743 | Msa1222130:CDS | 70.0% | |
| !! | GCTGGCTCTGGTGCCGGTGC+AGG | + | chr8_1:86332600-86332619 | Msa1222130:CDS | 75.0% |
| GCAGGGTCAGGGGCTGGGTC+AGG | + | chr8_1:86332729-86332748 | Msa1222130:CDS | 75.0% | |
| !! | GCTGGCTCTGGTGCCGGTGC+AGG | + | chr8_1:86332600-86332619 | Msa1222130:CDS | 75.0% |
| GCAGGGTCAGGGGCTGGGTC+AGG | + | chr8_1:86332729-86332748 | Msa1222130:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 86332438 | 86333219 | 86332438 | ID=Msa1222130;Name=Msa1222130 |
| chr8_1 | mRNA | 86332438 | 86333219 | 86332438 | ID=Msa1222130-mRNA-1;Parent=Msa1222130;Name=Msa1222130-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.5|0.33|1|0|0|3|290|136 |
| chr8_1 | exon | 86332438 | 86332657 | 86332438 | ID=Msa1222130-mRNA-1:exon:31015;Parent=Msa1222130-mRNA-1 |
| chr8_1 | exon | 86332670 | 86332780 | 86332670 | ID=Msa1222130-mRNA-1:exon:31016;Parent=Msa1222130-mRNA-1 |
| chr8_1 | exon | 86332850 | 86333219 | 86332850 | ID=Msa1222130-mRNA-1:exon:31017;Parent=Msa1222130-mRNA-1 |
| chr8_1 | CDS | 86332438 | 86332657 | 86332438 | ID=Msa1222130-mRNA-1:cds;Parent=Msa1222130-mRNA-1 |
| chr8_1 | CDS | 86332670 | 86332780 | 86332670 | ID=Msa1222130-mRNA-1:cds;Parent=Msa1222130-mRNA-1 |
| chr8_1 | CDS | 86332850 | 86332929 | 86332850 | ID=Msa1222130-mRNA-1:cds;Parent=Msa1222130-mRNA-1 |
| chr8_1 | three_prime_UTR | 86332930 | 86333219 | 86332930 | ID=Msa1222130-mRNA-1:three_prime_utr;Parent=Msa1222130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
