Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361480 | XP_003610089.2 | 95.068 | 811 | 17 | 2 | 1 | 811 | 1 | 788 | 0.0 | 1576 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361480 | sp|Q7ZVR1|WDR75_DANRE | 25.562 | 845 | 497 | 25 | 3 | 811 | 13 | 761 | 9.20e-57 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361480 | G7JUE1 | 95.068 | 811 | 17 | 2 | 1 | 811 | 1 | 788 | 0.0 | 1576 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1358800 | Msa1361480 | 0.910663 | 1.456087e-82 | -8.615850e-47 |
| Msa0477570 | Msa1361480 | 0.801625 | 8.241521e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361480 | MtrunA17_Chr4g0072211 | 95.068 | 811 | 17 | 2 | 1 | 811 | 1 | 788 | 0.0 | 1576 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361480 | AT2G18900.1 | 55.006 | 829 | 327 | 9 | 2 | 811 | 3 | 804 | 0.0 | 914 |
| Msa1361480 | AT3G26480.1 | 42.080 | 827 | 380 | 17 | 1 | 806 | 2 | 750 | 0.0 | 611 |
| Msa1361480 | AT3G26480.2 | 43.018 | 709 | 324 | 15 | 1 | 689 | 2 | 650 | 0.0 | 547 |
Find 217 sgRNAs with CRISPR-Local
Find 498 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTGTGTTCTGAATTTA+TGG | 0.051705 | tig0017500:+16935 | Msa1361480:CDS |
| GTCTTATTTGTTTGAAATTC+TGG | 0.092005 | tig0017500:+13472 | Msa1361480:CDS |
| TAGTCCCTGTGGGAAATTTC+TGG | 0.137918 | tig0017500:+10872 | Msa1361480:CDS |
| ACACATTTCTGCTTATTAAT+AGG | 0.159225 | tig0017500:+13684 | Msa1361480:CDS |
| TACCTCTTTCAATGTAATTA+TGG | 0.186644 | tig0017500:-10229 | Msa1361480:intergenic |
| AGAGAGTACCATGGAGAAAA+TGG | 0.188882 | tig0017500:-9976 | Msa1361480:intergenic |
| TCCACAATTTCAGGACAATT+TGG | 0.205354 | tig0017500:+16777 | Msa1361480:intron |
| ATTTGGTGCTAAGAACTTTC+AGG | 0.214057 | tig0017500:+11073 | Msa1361480:CDS |
| ACTGGAACTGTGTGAATTTC+AGG | 0.222150 | tig0017500:-9631 | Msa1361480:intergenic |
| GATGGAGTCTATTTGTATTC+AGG | 0.226447 | tig0017500:+11233 | Msa1361480:CDS |
| CATAAATTCAGAACACAATT+TGG | 0.241410 | tig0017500:-16953 | Msa1361480:intergenic |
| AAACAGACGTTCCTTTGATT+TGG | 0.242307 | tig0017500:-15291 | Msa1361480:intergenic |
| ACACTGCTTACATATTTAAA+TGG | 0.253048 | tig0017500:+16507 | Msa1361480:CDS |
| TATATTAAAGATCTCTTCTA+TGG | 0.256739 | tig0017500:+11938 | Msa1361480:CDS |
| CACATTTCTGCTTATTAATA+GGG | 0.258757 | tig0017500:+13685 | Msa1361480:CDS |
| AGATCTTTAATATATGAATT+TGG | 0.260390 | tig0017500:-11929 | Msa1361480:intergenic |
| TGCCCGCGTTTGAATTAAAA+AGG | 0.263248 | tig0017500:+16823 | Msa1361480:CDS |
| TTGTTTGAAATTCTGGGATT+TGG | 0.264801 | tig0017500:+13479 | Msa1361480:CDS |
| GCAGCCTTTGACCGCTCTTC+TGG | 0.272718 | tig0017500:+12647 | Msa1361480:CDS |
| TCAAAGGAACGTCTGTTTAA+AGG | 0.285658 | tig0017500:+15296 | Msa1361480:CDS |
| ATCCTATTCCAGTGGCTTCC+TGG | 0.299526 | tig0017500:+15351 | Msa1361480:CDS |
| GGTGGACATTGAAAATCTTT+TGG | 0.303410 | tig0017500:-13511 | Msa1361480:intergenic |
| TCTTTCAGATATGGGTTTGC+AGG | 0.310406 | tig0017500:+13864 | Msa1361480:intron |
| TATCTTCTTTCCGTATCTTA+TGG | 0.315540 | tig0017500:+14924 | Msa1361480:CDS |
| ATGTGATGACCCACTAAATA+TGG | 0.321210 | tig0017500:-16914 | Msa1361480:intergenic |
| AACAGACGTTCCTTTGATTT+GGG | 0.332736 | tig0017500:-15290 | Msa1361480:intergenic |
| AGACCTCCTATTCCTTCTTC+AGG | 0.339151 | tig0017500:-13453 | Msa1361480:intergenic |
| GAGATAATGAGGTCTATATC+AGG | 0.346516 | tig0017500:+11960 | Msa1361480:CDS |
| GCAGAATTAGAGTCCACTTT+AGG | 0.348714 | tig0017500:-10933 | Msa1361480:intergenic |
| AATCTGTGCAGAACAAAGTT+TGG | 0.352179 | tig0017500:-10172 | Msa1361480:intergenic |
| CTGCACCACAGCTGTCTGTT+TGG | 0.361408 | tig0017500:+14949 | Msa1361480:CDS |
| AATGAGCTCATTGCTGTTGT+AGG | 0.369186 | tig0017500:+14426 | Msa1361480:CDS |
| TCTTATTTGTTTGAAATTCT+GGG | 0.369586 | tig0017500:+13473 | Msa1361480:CDS |
| TAGCAAACAAGCTGTAGAAT+TGG | 0.385555 | tig0017500:-12703 | Msa1361480:intergenic |
| TGCTAATCGTGGACTTTATG+AGG | 0.385797 | tig0017500:+12721 | Msa1361480:CDS |
| TTTGTCCTCCCTTCATCGTT+CGG | 0.388349 | tig0017500:-9692 | Msa1361480:intergenic |
| TGACCGCTCTTCTGGTTTAG+TGG | 0.389101 | tig0017500:+12655 | Msa1361480:CDS |
| ATGGCTGTCAGCGCATCTTA+TGG | 0.392854 | tig0017500:+13749 | Msa1361480:CDS |
| TAGCTGCATCTTGGTCATAT+AGG | 0.395220 | tig0017500:+14985 | Msa1361480:CDS |
| AGGAAGGAGTTCTCGTGCTT+TGG | 0.397994 | tig0017500:+11693 | Msa1361480:CDS |
| CGAAGCGGAGATCCAATTCT+TGG | 0.399101 | tig0017500:-11746 | Msa1361480:intergenic |
| CTGGTGTATCAAATAGGCCT+TGG | 0.406292 | tig0017500:+16868 | Msa1361480:CDS |
| ATTGGGAGGCTCATCTTTGT+TGG | 0.406726 | tig0017500:+14891 | Msa1361480:CDS |
| CTTGTTGGGCTTGAAGAAAA+TGG | 0.408572 | tig0017500:+16603 | Msa1361480:CDS |
| GACCAGGAAGCCACTGGAAT+AGG | 0.410097 | tig0017500:-15353 | Msa1361480:intergenic |
| TGGGAAATTTCTGGGCATAA+AGG | 0.423011 | tig0017500:+10881 | Msa1361480:CDS |
| AGTCCCTGTGGGAAATTTCT+GGG | 0.428071 | tig0017500:+10873 | Msa1361480:CDS |
| GCAATGAGCTCATTCTTGTC+AGG | 0.429752 | tig0017500:-14417 | Msa1361480:intergenic |
| TTACAAGTTTCCTCCCTTGA+CGG | 0.430747 | tig0017500:+9810 | Msa1361480:CDS |
| TCATATAGGATTCAAATAGA+AGG | 0.434901 | tig0017500:+14999 | Msa1361480:CDS |
| AATTCAAACGCGGGCAACTC+TGG | 0.434969 | tig0017500:-16835 | Msa1361480:intergenic |
| TTCCATAATTACATTGAAAG+AGG | 0.437023 | tig0017500:+10227 | Msa1361480:CDS |
| GTTTCATCCGACCCGTCATA+TGG | 0.439794 | tig0017500:+13730 | Msa1361480:CDS |
| ATCTGTGCAGAACAAAGTTT+GGG | 0.441289 | tig0017500:-10171 | Msa1361480:intergenic |
| AACTTGTAAGGCGGTGGTGG+TGG | 0.441877 | tig0017500:-9796 | Msa1361480:intergenic |
| ATGCCATGTGGAACATGATT+CGG | 0.443721 | tig0017500:-11171 | Msa1361480:intergenic |
| GTAGGTAACAATGTTTGAAC+CGG | 0.444501 | tig0017500:-9868 | Msa1361480:intergenic |
| CGACGGCACCATCCGCCATT+GGG | 0.450628 | tig0017500:+9908 | Msa1361480:CDS |
| GTGGCTGCAGGCGATGTAAC+CGG | 0.453400 | tig0017500:+11029 | Msa1361480:CDS |
| AACTTTGTTCTGCACAGATT+AGG | 0.455949 | tig0017500:+10175 | Msa1361480:CDS |
| ATCTTATGGTGGAGATTTCA+AGG | 0.457592 | tig0017500:+13763 | Msa1361480:CDS |
| GTTGGATGTGCCATGCTGTT+GGG | 0.457899 | tig0017500:+13927 | Msa1361480:CDS |
| GTCTACTGACGGCTCTATGA+TGG | 0.459696 | tig0017500:+13410 | Msa1361480:CDS |
| ACCGAGGCAAATGAAGGATC+TGG | 0.461506 | tig0017500:-11785 | Msa1361480:intergenic |
| AACTAAAATTCCGACTTGTC+TGG | 0.461815 | tig0017500:-13907 | Msa1361480:intergenic |
| TCGACGGCACCATCCGCCAT+TGG | 0.462170 | tig0017500:+9907 | Msa1361480:CDS |
| TTCAGGTAGCTTGACTTCTA+CGG | 0.462358 | tig0017500:-13436 | Msa1361480:intergenic |
| AGTTGGATGTGCCATGCTGT+TGG | 0.463893 | tig0017500:+13926 | Msa1361480:CDS |
| CAAACATTGTTACCTACTGT+TGG | 0.466565 | tig0017500:+9874 | Msa1361480:CDS |
| TCACGTGCTTCCTTGTCATA+TGG | 0.467300 | tig0017500:-16555 | Msa1361480:intergenic |
| ATGGAATGCAAGAACGGAAA+AGG | 0.471744 | tig0017500:-10991 | Msa1361480:intergenic |
| GATGGTGCCGTCGAGGGAAG+AGG | 0.472827 | tig0017500:-9898 | Msa1361480:intergenic |
| AAGCTACCTGAAGAAGGAAT+AGG | 0.474205 | tig0017500:+13447 | Msa1361480:CDS |
| ACTGATGAGGAATGTAAGCC+TGG | 0.474768 | tig0017500:+11128 | Msa1361480:CDS |
| TCCAGATCCTTCATTTGCCT+CGG | 0.479151 | tig0017500:+11784 | Msa1361480:CDS |
| TGAATTTATGGAGTCTCTGA+TGG | 0.479950 | tig0017500:+16947 | Msa1361480:CDS |
| GAAGATAGCGACGGAGGTGC+CGG | 0.479976 | tig0017500:-9772 | Msa1361480:intergenic |
| GAGAGTACCATGGAGAAAAT+GGG | 0.480340 | tig0017500:-9975 | Msa1361480:intergenic |
| CATACCGTGACCTCGTCAAC+TGG | 0.480508 | tig0017500:-13234 | Msa1361480:intergenic |
| CCTTGGGAAACCATATTTAG+TGG | 0.481012 | tig0017500:+16885 | Msa1361480:CDS |
| CTATGCAGGATGATCTTGTT+GGG | 0.481211 | tig0017500:+16589 | Msa1361480:CDS |
| AAGAAGAATGGAGGCGCCAA+GGG | 0.482949 | tig0017500:-9590 | Msa1361480:intergenic |
| AAAAGCAATGCTCCCTCCCT+TGG | 0.482991 | tig0017500:-16463 | Msa1361480:intergenic |
| CAAGAATTGGATCTCCGCTT+CGG | 0.485117 | tig0017500:+11747 | Msa1361480:CDS |
| TGGAGTCTCTGATGGAGAAA+AGG | 0.488044 | tig0017500:+16955 | Msa1361480:CDS |
| CGACACTGTTATTACATTGT+GGG | 0.490216 | tig0017500:+14392 | Msa1361480:CDS |
| GCTGTACAAACAGATAATTA+TGG | 0.491659 | tig0017500:+12677 | Msa1361480:CDS |
| CACTGAGCACCGAACGATGA+AGG | 0.491940 | tig0017500:+9683 | Msa1361480:exon |
| TGGTGTATCAAATAGGCCTT+GGG | 0.492735 | tig0017500:+16869 | Msa1361480:CDS |
| ACAAAGATGAGCCTCCCAAT+TGG | 0.495393 | tig0017500:-14888 | Msa1361480:intergenic |
| TAGAAGACGGTCGCCGGAGT+TGG | 0.495515 | tig0017500:-9742 | Msa1361480:intergenic |
| CCTCCATCTTTCTCCAACTC+CGG | 0.496290 | tig0017500:+9729 | Msa1361480:CDS |
| CCTTCAGATATATTAGAAAG+TGG | 0.496992 | tig0017500:+13656 | Msa1361480:CDS |
| TACAGCTTGTTTGCTAATCG+TGG | 0.498916 | tig0017500:+12710 | Msa1361480:CDS |
| GAAGAAGAATGGAGGCGCCA+AGG | 0.504741 | tig0017500:-9591 | Msa1361480:intergenic |
| ACCTCCGTCATCGTCGTCCC+CGG | 0.504848 | tig0017500:+9849 | Msa1361480:CDS |
| TTCAGAACACAATTTGGTGA+GGG | 0.506646 | tig0017500:-16947 | Msa1361480:intergenic |
| AATCATGTTCCACATGGCAT+TGG | 0.506867 | tig0017500:+11174 | Msa1361480:CDS |
| ACTATGCAGGATGATCTTGT+TGG | 0.508221 | tig0017500:+16588 | Msa1361480:CDS |
| GGAAACTTGTAAGGCGGTGG+TGG | 0.510621 | tig0017500:-9799 | Msa1361480:intergenic |
| TGTCAAAGTTAGCTGCATCT+TGG | 0.514959 | tig0017500:+14976 | Msa1361480:CDS |
| AGCTGATGGTTCTGTGCTTG+CGG | 0.519424 | tig0017500:+14362 | Msa1361480:CDS |
| GAGGTCTATATCAGGGATCA+AGG | 0.523694 | tig0017500:+11968 | Msa1361480:CDS |
| AAGAGCGGTCAAAGGCTGCT+TGG | 0.523886 | tig0017500:-12643 | Msa1361480:intergenic |
| TATATGGAAAGTTCCTAAAG+TGG | 0.526039 | tig0017500:+10920 | Msa1361480:CDS |
| TTTATAATAGGTGGGAAGGA+AGG | 0.526948 | tig0017500:+11677 | Msa1361480:intron |
| GTCAAGGGAGGAAACTTGTA+AGG | 0.528574 | tig0017500:-9808 | Msa1361480:intergenic |
| CACAGGGACTAACGATCAAA+GGG | 0.532091 | tig0017500:-10860 | Msa1361480:intergenic |
| GAACGTCTGTTTAAAGGTGA+TGG | 0.533073 | tig0017500:+15302 | Msa1361480:CDS |
| CTGGAACTGTGTGAATTTCA+GGG | 0.533142 | tig0017500:-9630 | Msa1361480:intergenic |
| ACCTGTGAGGTTCATAAACA+AGG | 0.536448 | tig0017500:-13533 | Msa1361480:intergenic |
| TCGCCGGAGTTGGAGAAAGA+TGG | 0.538335 | tig0017500:-9732 | Msa1361480:intergenic |
| GCAGCCACAATCCTCTCAGT+TGG | 0.539224 | tig0017500:-11014 | Msa1361480:intergenic |
| GTTACAGACCAGGAAGCCAC+TGG | 0.539338 | tig0017500:-15359 | Msa1361480:intergenic |
| TGCTCTCATTCCCAAATCAA+AGG | 0.540226 | tig0017500:+15280 | Msa1361480:CDS |
| TTCAGGGGTACTACCTCCCT+TGG | 0.540366 | tig0017500:+9574 | Msa1361480:five_prime_UTR |
| CCACAATCCTCTCAGTTGGA+TGG | 0.541489 | tig0017500:-11010 | Msa1361480:intergenic |
| ACTCTCACCGAGGCAAATGA+AGG | 0.542459 | tig0017500:-11791 | Msa1361480:intergenic |
| CCCTTGTTTATGAACCTCAC+AGG | 0.543669 | tig0017500:+13532 | Msa1361480:CDS |
| GGCTTCCTGGTCTGTAACGA+AGG | 0.545184 | tig0017500:+15364 | Msa1361480:CDS |
| GAAGTCAAGCTACCTGAAGA+AGG | 0.545252 | tig0017500:+13441 | Msa1361480:CDS |
| CCACAGGGACTAACGATCAA+AGG | 0.545877 | tig0017500:-10861 | Msa1361480:intergenic |
| ATGGCGGATGGTGCCGTCGA+GGG | 0.547907 | tig0017500:-9904 | Msa1361480:intergenic |
| ACTGAGAGGATTGTGGCTGC+AGG | 0.549542 | tig0017500:+11017 | Msa1361480:CDS |
| CCGACACTGTTATTACATTG+TGG | 0.549682 | tig0017500:+14391 | Msa1361480:CDS |
| ATATGATAAATCTAATGCAC+AGG | 0.550493 | tig0017500:-15246 | Msa1361480:intergenic |
| CCTTTGATCGTTAGTCCCTG+TGG | 0.550626 | tig0017500:+10861 | Msa1361480:CDS |
| GACCGTCTTCTAGTCGGCTC+CGG | 0.551757 | tig0017500:+9753 | Msa1361480:CDS |
| TCTACTGACGGCTCTATGAT+GGG | 0.554140 | tig0017500:+13411 | Msa1361480:CDS |
| AGGAATGTAAGCCTGGGGTA+AGG | 0.555165 | tig0017500:+11135 | Msa1361480:CDS |
| TGAGCTTAATATGACTATGC+AGG | 0.557854 | tig0017500:+16575 | Msa1361480:CDS |
| GCCGACTAGAAGACGGTCGC+CGG | 0.558169 | tig0017500:-9748 | Msa1361480:intergenic |
| ATAGACTCCATCTGAAGAGA+AGG | 0.559080 | tig0017500:-11222 | Msa1361480:intergenic |
| CAATACCTTCGTTACAGACC+AGG | 0.561180 | tig0017500:-15369 | Msa1361480:intergenic |
| AGTATCGGTGTGACCGTCAA+GGG | 0.562310 | tig0017500:-9823 | Msa1361480:intergenic |
| CCACTTTCTAATATATCTGA+AGG | 0.563084 | tig0017500:-13656 | Msa1361480:intergenic |
| TATTCTTTCAGCCAATTGGG+AGG | 0.564177 | tig0017500:+14877 | Msa1361480:intron |
| TGCGCTGACAGCCATATGAC+GGG | 0.567458 | tig0017500:-13741 | Msa1361480:intergenic |
| ACTGAGCACCGAACGATGAA+GGG | 0.571623 | tig0017500:+9684 | Msa1361480:exon |
| CTTTCAGATATGGGTTTGCA+GGG | 0.572213 | tig0017500:+13865 | Msa1361480:intron |
| TCCTTATTCAGGCCAAGGGA+GGG | 0.574416 | tig0017500:+16451 | Msa1361480:intron |
| TGGTGCAGAACCATAAGATA+CGG | 0.575595 | tig0017500:-14934 | Msa1361480:intergenic |
| ATGCGCTGACAGCCATATGA+CGG | 0.576443 | tig0017500:-13742 | Msa1361480:intergenic |
| TCTCTTCTATGGAGATAATG+AGG | 0.579103 | tig0017500:+11949 | Msa1361480:CDS |
| CTCCTTATTCAGGCCAAGGG+AGG | 0.579287 | tig0017500:+16450 | Msa1361480:intron |
| AGTTGGATGGAATGCAAGAA+CGG | 0.583563 | tig0017500:-10997 | Msa1361480:intergenic |
| CATATTTCTTGAGAAGACAA+AGG | 0.583774 | tig0017500:-12605 | Msa1361480:intergenic |
| CTTTGATCGTTAGTCCCTGT+GGG | 0.584126 | tig0017500:+10862 | Msa1361480:CDS |
| CTACCTGAAGAAGGAATAGG+AGG | 0.587849 | tig0017500:+13450 | Msa1361480:CDS |
| CAGTATCGGTGTGACCGTCA+AGG | 0.588682 | tig0017500:-9824 | Msa1361480:intergenic |
| GGAGGAAACTTGTAAGGCGG+TGG | 0.590494 | tig0017500:-9802 | Msa1361480:intergenic |
| CTTGGGAAACCATATTTAGT+GGG | 0.591029 | tig0017500:+16886 | Msa1361480:CDS |
| CCATCCAACTGAGAGGATTG+TGG | 0.594328 | tig0017500:+11010 | Msa1361480:CDS |
| CAATGAGCTCATTCTTGTCA+GGG | 0.598664 | tig0017500:-14416 | Msa1361480:intergenic |
| GAACACAATTTGGTGAGGGG+TGG | 0.599664 | tig0017500:-16943 | Msa1361480:intergenic |
| ATTCAGAACACAATTTGGTG+AGG | 0.601346 | tig0017500:-16948 | Msa1361480:intergenic |
| TATGCCCAGAAATTTCCCAC+AGG | 0.602180 | tig0017500:-10877 | Msa1361480:intergenic |
| ACTCTCCTTATTCAGGCCAA+GGG | 0.605057 | tig0017500:+16447 | Msa1361480:intron |
| TGAACCGGGGACGACGATGA+CGG | 0.610939 | tig0017500:-9853 | Msa1361480:intergenic |
| TAGGTAACAATGTTTGAACC+GGG | 0.612008 | tig0017500:-9867 | Msa1361480:intergenic |
| GGAGAAATCCCAATGGCGGA+TGG | 0.612056 | tig0017500:-9916 | Msa1361480:intergenic |
| ATGGTGGAGTTGTCTACTGA+CGG | 0.612208 | tig0017500:+13399 | Msa1361480:CDS |
| TGTTGGACCTCTTCCCTCGA+CGG | 0.613084 | tig0017500:+9891 | Msa1361480:CDS |
| CAGAACATCAATGACTGATG+AGG | 0.616046 | tig0017500:+11115 | Msa1361480:CDS |
| AAGAATGGAGGCGCCAAGGG+AGG | 0.616686 | tig0017500:-9587 | Msa1361480:intergenic |
| CGCAACAGATCCTATTCCAG+TGG | 0.616768 | tig0017500:+15343 | Msa1361480:CDS |
| GATGGAGAAAAGGACATCGA+TGG | 0.617383 | tig0017500:+16965 | Msa1361480:CDS |
| TCAACCAGTTGACGAGGTCA+CGG | 0.618650 | tig0017500:+13230 | Msa1361480:CDS |
| TGCCGGAGCCGACTAGAAGA+CGG | 0.620612 | tig0017500:-9755 | Msa1361480:intergenic |
| TAAACCAGAAGAGCGGTCAA+AGG | 0.622616 | tig0017500:-12651 | Msa1361480:intergenic |
| AGATAATGAGGTCTATATCA+GGG | 0.622880 | tig0017500:+11961 | Msa1361480:CDS |
| CCACAATGTAATAACAGTGT+CGG | 0.626869 | tig0017500:-14391 | Msa1361480:intergenic |
| CCACTAAATATGGTTTCCCA+AGG | 0.626904 | tig0017500:-16904 | Msa1361480:intergenic |
| GAGGGAAGAGGTCCAACAGT+AGG | 0.627330 | tig0017500:-9886 | Msa1361480:intergenic |
| GATACCATCGTTATTGTCAC+CGG | 0.628026 | tig0017500:+10077 | Msa1361480:CDS |
| AATGGCGGATGGTGCCGTCG+AGG | 0.629512 | tig0017500:-9905 | Msa1361480:intergenic |
| GTGCTTTGGCAGCTAGACAC+CGG | 0.633010 | tig0017500:+11707 | Msa1361480:CDS |
| TCAGAACACAATTTGGTGAG+GGG | 0.634558 | tig0017500:-16946 | Msa1361480:intergenic |
| AGCAGAAAGACCAGACAAGT+CGG | 0.638688 | tig0017500:+13897 | Msa1361480:CDS |
| ATGCCCAGAAATTTCCCACA+GGG | 0.639581 | tig0017500:-10876 | Msa1361480:intergenic |
| ATCGGTGTGACCGTCAAGGG+AGG | 0.641445 | tig0017500:-9820 | Msa1361480:intergenic |
| TTGCATTCCATCCAACTGAG+AGG | 0.642642 | tig0017500:+11003 | Msa1361480:CDS |
| GCTGTCAGCGCATCTTATGG+TGG | 0.643757 | tig0017500:+13752 | Msa1361480:CDS |
| TCTCTTTGATCCATATGACA+AGG | 0.644718 | tig0017500:+16545 | Msa1361480:CDS |
| TCCGGCGACCGTCTTCTAGT+CGG | 0.645660 | tig0017500:+9747 | Msa1361480:CDS |
| CAAACCCTTATATGCTTCAG+GGG | 0.646184 | tig0017500:+9559 | None:intergenic |
| GGACTAACGATCAAAGGGTG+AGG | 0.649796 | tig0017500:-10855 | Msa1361480:intergenic |
| CCGGAGTTGGAGAAAGATGG+AGG | 0.653982 | tig0017500:-9729 | Msa1361480:intergenic |
| GATGACGGAGGTGACAGTAT+CGG | 0.656068 | tig0017500:-9838 | Msa1361480:intergenic |
| CCTGTGAGGTTCATAAACAA+GGG | 0.660359 | tig0017500:-13532 | Msa1361480:intergenic |
| ACTTATATGACCCAACAGCA+TGG | 0.661286 | tig0017500:-13937 | Msa1361480:intergenic |
| CTGATGAGGAATGTAAGCCT+GGG | 0.661805 | tig0017500:+11129 | Msa1361480:CDS |
| ATGCCGAATCATGTTCCACA+TGG | 0.664291 | tig0017500:+11168 | Msa1361480:CDS |
| TCTTCCGGTGACAATAACGA+TGG | 0.670887 | tig0017500:-10081 | Msa1361480:intergenic |
| ATTTCTTGAGAAGACAAAGG+AGG | 0.675737 | tig0017500:-12602 | Msa1361480:intergenic |
| CTGACAGCCATATGACGGGT+CGG | 0.676520 | tig0017500:-13737 | Msa1361480:intergenic |
| GTGAGGTTCATAAACAAGGG+TGG | 0.679854 | tig0017500:-13529 | Msa1361480:intergenic |
| GGTGGAGAAGATAGCGACGG+AGG | 0.680579 | tig0017500:-9778 | Msa1361480:intergenic |
| GAGCACCGAACGATGAAGGG+AGG | 0.689052 | tig0017500:+9687 | Msa1361480:exon |
| GAAGGGAGAAATCCCAATGG+CGG | 0.691311 | tig0017500:-9920 | Msa1361480:intergenic |
| AAATTATCAACCAGTTGACG+AGG | 0.695676 | tig0017500:+13224 | Msa1361480:CDS |
| GTCAGTAGACAACTCCACCA+TGG | 0.700569 | tig0017500:-13397 | Msa1361480:intergenic |
| GGTGGTGGAGAAGATAGCGA+CGG | 0.700715 | tig0017500:-9781 | Msa1361480:intergenic |
| ACCGGGGACGACGATGACGG+AGG | 0.701693 | tig0017500:-9850 | Msa1361480:intergenic |
| AAGGGAGGAAACTTGTAAGG+CGG | 0.703168 | tig0017500:-9805 | Msa1361480:intergenic |
| ATACTCCAAACAGACAGCTG+TGG | 0.705773 | tig0017500:-14954 | Msa1361480:intergenic |
| GAATCTATGAAATACCGAAG+CGG | 0.706779 | tig0017500:-11761 | Msa1361480:intergenic |
| TGAGAAGGGAGAAATCCCAA+TGG | 0.715811 | tig0017500:-9923 | Msa1361480:intergenic |
| GTTGCAGGTAGTAGTGACCA+TGG | 0.717858 | tig0017500:+13380 | Msa1361480:intron |
| TGTTGTAGGAGAGACTCCAT+CGG | 0.719054 | tig0017500:+14440 | Msa1361480:CDS |
| AGGTAACAATGTTTGAACCG+GGG | 0.733423 | tig0017500:-9866 | Msa1361480:intergenic |
| GGTCGGATGAAACGTAATAG+CGG | 0.734607 | tig0017500:-13720 | Msa1361480:intergenic |
| ATCAGAGTGCCAATGCCATG+TGG | 0.739934 | tig0017500:-11183 | Msa1361480:intergenic |
| AATCCGTTGACACACCTGTG+AGG | 0.748408 | tig0017500:-13546 | Msa1361480:intergenic |
| CAGCCACTAAACCAGAAGAG+CGG | 0.753592 | tig0017500:-12658 | Msa1361480:intergenic |
| TGATGAGGAATGTAAGCCTG+GGG | 0.761336 | tig0017500:+11130 | Msa1361480:CDS |
| GCAGGTAGTAGTGACCATGG+TGG | 0.771993 | tig0017500:+13383 | Msa1361480:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTCTTTTTTTTTTTTTT+AGG | + | tig0017500:10274-10293 | Msa1361480:intron | 10.0% |
| !!! | TATAAATTTTCTACTTAATT+AGG | + | tig0017500:12125-12144 | Msa1361480:intron | 10.0% |
| !! | ATTATAAATTCTACTTAATT+AGG | + | tig0017500:12314-12333 | Msa1361480:intron | 10.0% |
| !!! | TTTCTTTTTGATTATTAATT+TGG | + | tig0017500:12902-12921 | Msa1361480:intron | 10.0% |
| !! | ATAAAAGAAAATTAATGAAA+AGG | - | tig0017500:13082-13101 | Msa1361480:intergenic | 10.0% |
| !!! | CATTTAATATTTTATTTTGT+AGG | + | tig0017500:13982-14001 | Msa1361480:intron | 10.0% |
| !!! | AATAAAAGTATATAAAATGA+AGG | - | tig0017500:14201-14220 | Msa1361480:intergenic | 10.0% |
| !!! | TTTTTTTTTGTTTAAATCAT+AGG | + | tig0017500:15747-15766 | Msa1361480:intron | 10.0% |
| !!! | AAAAACACTTTAAAATAAAA+AGG | + | tig0017500:15859-15878 | Msa1361480:intron | 10.0% |
| !! | TTGTAATTAAAATTAAAAAC+AGG | + | tig0017500:16182-16201 | Msa1361480:intron | 10.0% |
| !!! | ATTTTTGTTATGAATATTGT+AGG | + | tig0017500:10053-10072 | Msa1361480:intron | 15.0% |
| !! | TCTAAAAATTAAAATTCTTC+CGG | - | tig0017500:11051-11070 | Msa1361480:intergenic | 15.0% |
| !!! | ATTTTAATTTTTAGAGGATT+TGG | + | tig0017500:11056-11075 | Msa1361480:CDS | 15.0% |
| !!! | TTGTTTTTTATAATAATTCG+AGG | - | tig0017500:11270-11289 | Msa1361480:intergenic | 15.0% |
| !! | ATTATAAAAAACAATTGAAC+TGG | + | tig0017500:11276-11295 | Msa1361480:intron | 15.0% |
| !! | ATAATTAATGAAATCCTAAT+TGG | - | tig0017500:11446-11465 | Msa1361480:intergenic | 15.0% |
| !!! | ATAATGTTTTAAACTAATCA+AGG | + | tig0017500:11881-11900 | Msa1361480:intron | 15.0% |
| !!! | TAATGTTTTAAACTAATCAA+GGG | + | tig0017500:11882-11901 | Msa1361480:intron | 15.0% |
| !! | AGATCTTTAATATATGAATT+TGG | - | tig0017500:11932-11951 | Msa1361480:intergenic | 15.0% |
| !! | AAGTAGAAAATTTATAATGA+TGG | - | tig0017500:12121-12140 | Msa1361480:intergenic | 15.0% |
| !! | TTAAGTAGAATTTATAATGA+TGG | - | tig0017500:12312-12331 | Msa1361480:intergenic | 15.0% |
| !! | AATATATCTACAAATATGTA+CGG | - | tig0017500:13633-13652 | Msa1361480:intergenic | 15.0% |
| !!! | TCAAAAAAAGTATCTAAAAA+GGG | - | tig0017500:13801-13820 | Msa1361480:intergenic | 15.0% |
| !!! | TTCAAAAAAAGTATCTAAAA+AGG | - | tig0017500:13802-13821 | Msa1361480:intergenic | 15.0% |
| !! | ATTTAATGAATTTAGACATT+AGG | + | tig0017500:15526-15545 | Msa1361480:intron | 15.0% |
| !! | ATTAAATTAAAAGACAATTC+TGG | - | tig0017500:16349-16368 | Msa1361480:intergenic | 15.0% |
| !! | TAAAGATAAGAAAATCGTTA+GGG | - | tig0017500:10010-10029 | Msa1361480:intergenic | 20.0% |
| !! | ATAAAGATAAGAAAATCGTT+AGG | - | tig0017500:10011-10030 | Msa1361480:intergenic | 20.0% |
| !! | TGAATGATTGTATAATGTTA+GGG | + | tig0017500:10320-10339 | Msa1361480:intron | 20.0% |
| !!! | TGTTCATGTAAAATTGATTT+TGG | + | tig0017500:10533-10552 | Msa1361480:intron | 20.0% |
| !!! | AAAATTGATTTTGATATGCT+TGG | - | tig0017500:10682-10701 | Msa1361480:intergenic | 20.0% |
| !! | ATAAATGTTGACAACTTAAT+AGG | - | tig0017500:10767-10786 | Msa1361480:intergenic | 20.0% |
| !!! | GGAAGAATTTTAATTTTTAG+AGG | + | tig0017500:11050-11069 | Msa1361480:CDS | 20.0% |
| !! | ATTATTCAAAACAGTTTGAA+TGG | - | tig0017500:11502-11521 | Msa1361480:intergenic | 20.0% |
| !!! | AATAATTTTCTGCTCAATAA+AGG | - | tig0017500:11622-11641 | Msa1361480:intergenic | 20.0% |
| !! | TTTATTGAGCAGAAAATTAT+TGG | + | tig0017500:11621-11640 | Msa1361480:intron | 20.0% |
| !!! | AAGAAATTTTTACCAAGAAT+TGG | + | tig0017500:11734-11753 | Msa1361480:CDS | 20.0% |
| !! | TATATTAAAGATCTCTTCTA+TGG | + | tig0017500:11938-11957 | Msa1361480:CDS | 20.0% |
| !! | ATTATGAATAGACCAAATAA+AGG | - | tig0017500:12000-12019 | Msa1361480:intergenic | 20.0% |
| !! | TCTATTCATAATATTGTTTC+TGG | + | tig0017500:12008-12027 | Msa1361480:intron | 20.0% |
| !!! | CTATTCATAATATTGTTTCT+GGG | + | tig0017500:12009-12028 | Msa1361480:intron | 20.0% |
| !!! | TATTCATAATATTGTTTCTG+GGG | + | tig0017500:12010-12029 | Msa1361480:intron | 20.0% |
| !! | TAAAATTGTAAGACCAAATA+AGG | - | tig0017500:12270-12289 | Msa1361480:intergenic | 20.0% |
| !!! | TTGATTATTAATTTGGTGTT+TGG | + | tig0017500:12909-12928 | Msa1361480:intron | 20.0% |
| !! | ATCATATTTAGAAGCAAAAT+GGG | - | tig0017500:13268-13287 | Msa1361480:intergenic | 20.0% |
| !!! | TCTTATTTGTTTGAAATTCT+GGG | + | tig0017500:13473-13492 | Msa1361480:CDS | 20.0% |
| !! | TTAAATGTAGCAATTAAAGT+AGG | - | tig0017500:13969-13988 | Msa1361480:intergenic | 20.0% |
| !!! | TTTTCCTGTAATAAAAATGT+AGG | + | tig0017500:14133-14152 | Msa1361480:intron | 20.0% |
| !!! | TAATCCTACATTTTTATTAC+AGG | - | tig0017500:14140-14159 | Msa1361480:intergenic | 20.0% |
| !! | TAATAAAAATGTAGGATTAG+CGG | + | tig0017500:14141-14160 | Msa1361480:intron | 20.0% |
| !!! | CATTCTAAAAATATAACAGA+AGG | - | tig0017500:14774-14793 | Msa1361480:intergenic | 20.0% |
| !! | AATAAAAAATTAGACCAACA+GGG | - | tig0017500:14861-14880 | Msa1361480:intergenic | 20.0% |
| !! | AATGCTTATCAATAAAAAGA+CGG | - | tig0017500:15110-15129 | Msa1361480:intergenic | 20.0% |
| !! | ATTCTCATGAAATATAATTG+AGG | - | tig0017500:15787-15806 | Msa1361480:intergenic | 20.0% |
| !! | TTCATACAAATCTTACAAAA+AGG | - | tig0017500:16082-16101 | Msa1361480:intergenic | 20.0% |
| !!! | TCATTCTAATCAGATTATTT+TGG | + | tig0017500:16302-16321 | Msa1361480:intron | 20.0% |
| !! | ATAATAACAGAAAGAAAAAG+TGG | - | tig0017500:16718-16737 | Msa1361480:intergenic | 20.0% |
| !!! | ACTTTTTCTTTCTGTTATTA+TGG | + | tig0017500:16717-16736 | Msa1361480:intron | 20.0% |
| !!! | TATTTTGATGCATTTGAGAA+GGG | - | tig0017500:9940-9959 | Msa1361480:intergenic | 25.0% |
| !!! | TTATTTTGATGCATTTGAGA+AGG | - | tig0017500:9941-9960 | Msa1361480:intergenic | 25.0% |
| !! | TTTTCACTAATTTCTTCTTC+CGG | - | tig0017500:10099-10118 | Msa1361480:intergenic | 25.0% |
| ! | TTCCATAATTACATTGAAAG+AGG | + | tig0017500:10227-10246 | Msa1361480:CDS | 25.0% |
| ! | TACCTCTTTCAATGTAATTA+TGG | - | tig0017500:10232-10251 | Msa1361480:intergenic | 25.0% |
| !!! | TTTAGGTTTTATTGTTGTTG+TGG | + | tig0017500:10291-10310 | Msa1361480:intron | 25.0% |
| ! | GTGAATGATTGTATAATGTT+AGG | + | tig0017500:10319-10338 | Msa1361480:intron | 25.0% |
| ! | ACACACTAATTCAAATTACT+TGG | - | tig0017500:10377-10396 | Msa1361480:intergenic | 25.0% |
| ! | GTAATTTGAATTAGTGTGTT+TGG | + | tig0017500:10378-10397 | Msa1361480:intron | 25.0% |
| !!! | AGATTGATTTTGGTTAAAAG+TGG | + | tig0017500:10415-10434 | Msa1361480:intron | 25.0% |
| ! | GACAGTTAATCTATTATGTT+TGG | + | tig0017500:10562-10581 | Msa1361480:intron | 25.0% |
| !! | TCTAACTTACACTAGAATTT+TGG | - | tig0017500:10637-10656 | Msa1361480:intergenic | 25.0% |
| ! | TTTGCAATTATTCTTCTGTT+TGG | + | tig0017500:11333-11352 | Msa1361480:intron | 25.0% |
| !! | ACTTTTCCAATTATCTTGTA+AGG | + | tig0017500:11363-11382 | Msa1361480:intron | 25.0% |
| ! | CAAAATCCTTACAAGATAAT+TGG | - | tig0017500:11372-11391 | Msa1361480:intergenic | 25.0% |
| ! | TGTATATCTTAAACTCTTAG+CGG | + | tig0017500:11523-11542 | Msa1361480:intron | 25.0% |
| ! | TGCTAAATGAATATAAGAGA+AGG | + | tig0017500:11572-11591 | Msa1361480:intron | 25.0% |
| !! | TTGTGCCATCATTTTATAAT+AGG | + | tig0017500:11665-11684 | Msa1361480:intron | 25.0% |
| ! | TGGTAAAAATTTCTTCTTTC+CGG | - | tig0017500:11729-11748 | Msa1361480:intergenic | 25.0% |
| ! | TCATATATTCGACTACATAA+AGG | - | tig0017500:11819-11838 | Msa1361480:intergenic | 25.0% |
| !! | AATATATGATTGTTAGTCTG+TGG | + | tig0017500:11830-11849 | Msa1361480:intron | 25.0% |
| !! | ATATATGATTGTTAGTCTGT+GGG | + | tig0017500:11831-11850 | Msa1361480:intron | 25.0% |
| ! | GGTGTGTCTTAAAATATATT+TGG | + | tig0017500:12042-12061 | Msa1361480:intron | 25.0% |
| ! | TTATATATTCTCAGCAAAGT+TGG | - | tig0017500:12418-12437 | Msa1361480:intergenic | 25.0% |
| ! | ATAAAGACTGTTATGCTAAA+TGG | + | tig0017500:12434-12453 | Msa1361480:intron | 25.0% |
| !! | ATAAGAAATGCATTTGTTGA+AGG | + | tig0017500:12547-12566 | Msa1361480:intron | 25.0% |
| ! | CATCATATTTAGAAGCAAAA+TGG | - | tig0017500:13269-13288 | Msa1361480:intergenic | 25.0% |
| ! | CATTTATTCATCAAATAACG+TGG | + | tig0017500:13358-13377 | Msa1361480:intron | 25.0% |
| !!! | GTCTTATTTGTTTGAAATTC+TGG | + | tig0017500:13472-13491 | Msa1361480:CDS | 25.0% |
| ! | ACACATTTCTGCTTATTAAT+AGG | + | tig0017500:13684-13703 | Msa1361480:CDS | 25.0% |
| ! | CACATTTCTGCTTATTAATA+GGG | + | tig0017500:13685-13704 | Msa1361480:CDS | 25.0% |
| !!! | GATACTTTTTTTGAATGCTT+AGG | + | tig0017500:13807-13826 | Msa1361480:intron | 25.0% |
| !!! | TACTTTTATTTACCGTCATT+TGG | + | tig0017500:14211-14230 | Msa1361480:intron | 25.0% |
| !!! | CATTGCTTTATTTCTGTAAA+GGG | - | tig0017500:14325-14344 | Msa1361480:intergenic | 25.0% |
| !!! | TCATTGCTTTATTTCTGTAA+AGG | - | tig0017500:14326-14345 | Msa1361480:intergenic | 25.0% |
| ! | CAAAATAATCACACAAGTAA+TGG | - | tig0017500:14605-14624 | Msa1361480:intergenic | 25.0% |
| !!! | TTACTTGTGTGATTATTTTG+TGG | + | tig0017500:14605-14624 | Msa1361480:intron | 25.0% |
| ! | AAACAATAAGAAAGAAAGCA+TGG | + | tig0017500:14730-14749 | Msa1361480:intron | 25.0% |
| ! | GAATAAAAAATTAGACCAAC+AGG | - | tig0017500:14862-14881 | Msa1361480:intergenic | 25.0% |
| !! | TTTTTATTCTTTCAGCCAAT+TGG | + | tig0017500:14873-14892 | Msa1361480:intron | 25.0% |
| !! | TTTTATTCTTTCAGCCAATT+GGG | + | tig0017500:14874-14893 | Msa1361480:intron | 25.0% |
| ! | TCATATAGGATTCAAATAGA+AGG | + | tig0017500:14999-15018 | Msa1361480:CDS | 25.0% |
| ! | GAAAAAATATCAACATGGTA+GGG | - | tig0017500:15083-15102 | Msa1361480:intergenic | 25.0% |
| ! | ATATGATAAATCTAATGCAC+AGG | - | tig0017500:15249-15268 | Msa1361480:intergenic | 25.0% |
| !! | GCTTGTGTTATAAAGATTTT+TGG | - | tig0017500:15643-15662 | Msa1361480:intergenic | 25.0% |
| !!! | GGTTTTAAGAAAATAACTGT+TGG | + | tig0017500:15880-15899 | Msa1361480:intron | 25.0% |
| ! | TATGCATATATACCAAAACA+TGG | - | tig0017500:16259-16278 | Msa1361480:intergenic | 25.0% |
| ! | TTAACCATGAATGAAATTTG+TGG | + | tig0017500:16400-16419 | Msa1361480:intron | 25.0% |
| ! | ACACTGCTTACATATTTAAA+TGG | + | tig0017500:16507-16526 | Msa1361480:CDS | 25.0% |
| ! | CATAAATTCAGAACACAATT+TGG | - | tig0017500:16937-16956 | Msa1361480:intergenic | 25.0% |
| !! | CAAATTGTGTTCTGAATTTA+TGG | + | tig0017500:16935-16954 | Msa1361480:CDS | 25.0% |
| AATGAATTCGAGTGTATGTT+TGG | + | tig0017500:10476-10495 | Msa1361480:intron | 30.0% | |
| !!! | TACACCTCTAGAATCAATTT+TGG | + | tig0017500:10701-10720 | Msa1361480:intron | 30.0% |
| ! | TTAGCCAAAATTGATTCTAG+AGG | - | tig0017500:10708-10727 | Msa1361480:intergenic | 30.0% |
| !!! | AATTTTGGCTAAGCAAAAAG+TGG | + | tig0017500:10716-10735 | Msa1361480:intron | 30.0% |
| AAAAACGCACACTTCATATA+TGG | + | tig0017500:10904-10923 | Msa1361480:CDS | 30.0% | |
| TATATGGAAAGTTCCTAAAG+TGG | + | tig0017500:10920-10939 | Msa1361480:CDS | 30.0% | |
| ! | AAAGGTTTTTGTATGATGCA+GGG | - | tig0017500:10976-10995 | Msa1361480:intergenic | 30.0% |
| ! | AAAAGGTTTTTGTATGATGC+AGG | - | tig0017500:10977-10996 | Msa1361480:intergenic | 30.0% |
| TTATAATAATTCGAGGCGTA+TGG | - | tig0017500:11263-11282 | Msa1361480:intergenic | 30.0% | |
| CAACAATATTTGCTCCAATT+AGG | + | tig0017500:11429-11448 | Msa1361480:intron | 30.0% | |
| TGAATATAAGAGAAGGTTGA+TGG | + | tig0017500:11579-11598 | Msa1361480:intron | 30.0% | |
| ! | TGCCATCATTTTATAATAGG+TGG | + | tig0017500:11668-11687 | Msa1361480:intron | 30.0% |
| ! | GCCATCATTTTATAATAGGT+GGG | + | tig0017500:11669-11688 | Msa1361480:intron | 30.0% |
| TCCCACCTATTATAAAATGA+TGG | - | tig0017500:11673-11692 | Msa1361480:intergenic | 30.0% | |
| ! | TCATTTTATAATAGGTGGGA+AGG | + | tig0017500:11673-11692 | Msa1361480:intron | 30.0% |
| AGATAATGAGGTCTATATCA+GGG | + | tig0017500:11961-11980 | Msa1361480:CDS | 30.0% | |
| ! | TCAAGGTTAGTTCCTTTATT+TGG | + | tig0017500:11985-12004 | Msa1361480:intron | 30.0% |
| GTCACTCTTCATATCAAATA+CGG | - | tig0017500:12187-12206 | Msa1361480:intergenic | 30.0% | |
| TAAGACCAAATAAGGATATG+TGG | - | tig0017500:12262-12281 | Msa1361480:intergenic | 30.0% | |
| ! | CTTGCAAGATCATTTTCAAA+AGG | - | tig0017500:12467-12486 | Msa1361480:intergenic | 30.0% |
| AAATGATCTTGCAAGAACAA+TGG | + | tig0017500:12472-12491 | Msa1361480:intron | 30.0% | |
| AATGATCTTGCAAGAACAAT+GGG | + | tig0017500:12473-12492 | Msa1361480:intron | 30.0% | |
| CATATTTCTTGAGAAGACAA+AGG | - | tig0017500:12608-12627 | Msa1361480:intergenic | 30.0% | |
| GCTGTACAAACAGATAATTA+TGG | + | tig0017500:12677-12696 | Msa1361480:CDS | 30.0% | |
| !! | TATTAATTTGGTGTTTGGTC+TGG | + | tig0017500:12914-12933 | Msa1361480:intron | 30.0% |
| ! | TTCCTTTAAAAACACTCCTT+GGG | + | tig0017500:13106-13125 | Msa1361480:intron | 30.0% |
| GTTATCAAAGTTTAAAGGCA+AGG | - | tig0017500:13137-13156 | Msa1361480:intergenic | 30.0% | |
| AGGCTGTTATCAAAGTTTAA+AGG | - | tig0017500:13142-13161 | Msa1361480:intergenic | 30.0% | |
| !! | AAAATGTTGAAGTTTGTTGC+AGG | + | tig0017500:13185-13204 | Msa1361480:intron | 30.0% |
| !! | TTGTTTGAAATTCTGGGATT+TGG | + | tig0017500:13479-13498 | Msa1361480:CDS | 30.0% |
| CCACTTTCTAATATATCTGA+AGG | - | tig0017500:13659-13678 | Msa1361480:intergenic | 30.0% | |
| CCTTCAGATATATTAGAAAG+TGG | + | tig0017500:13656-13675 | Msa1361480:CDS | 30.0% | |
| ! | TGAATGCTTAGGAATTTTTC+TGG | + | tig0017500:13818-13837 | Msa1361480:intron | 30.0% |
| !! | GCATGTCTTATTTGTTGAAA+TGG | - | tig0017500:14546-14565 | Msa1361480:intergenic | 30.0% |
| ! | TACATTAAAGCATCAAACAC+AGG | + | tig0017500:14700-14719 | Msa1361480:intron | 30.0% |
| !! | ATGCCTATAAATGTTGGTTT+GGG | + | tig0017500:14795-14814 | Msa1361480:intron | 30.0% |
| TATCTTCTTTCCGTATCTTA+TGG | + | tig0017500:14924-14943 | Msa1361480:CDS | 30.0% | |
| GGAAAAAATATCAACATGGT+AGG | - | tig0017500:15084-15103 | Msa1361480:intergenic | 30.0% | |
| GAGAGGAAAAAATATCAACA+TGG | - | tig0017500:15088-15107 | Msa1361480:intergenic | 30.0% | |
| TTATCAATAAAAAGACGGAG+AGG | - | tig0017500:15105-15124 | Msa1361480:intergenic | 30.0% | |
| ATACGGAGAAATACAAAGAA+CGG | - | tig0017500:15144-15163 | Msa1361480:intergenic | 30.0% | |
| TAACCTATGACTCATTGAAT+GGG | + | tig0017500:15176-15195 | Msa1361480:intron | 30.0% | |
| ! | AAAACAACTTTCAAAAGCAC+TGG | - | tig0017500:15495-15514 | Msa1361480:intergenic | 30.0% |
| ATTAACACAATAGTACACGT+TGG | - | tig0017500:15583-15602 | Msa1361480:intergenic | 30.0% | |
| ! | TGTTAATTTCTGAGAAGCAT+GGG | + | tig0017500:15596-15615 | Msa1361480:intron | 30.0% |
| GAAACAAAGTGAATACAAGA+TGG | - | tig0017500:16060-16079 | Msa1361480:intergenic | 30.0% | |
| !!! | TAATCAGATTATTTTGGAGC+TGG | + | tig0017500:16308-16327 | Msa1361480:intron | 30.0% |
| AACACCACAAATTTCATTCA+TGG | - | tig0017500:16407-16426 | Msa1361480:intergenic | 30.0% | |
| !! | TTCCTTTTTAATTCAAACGC+GGG | - | tig0017500:16828-16847 | Msa1361480:intergenic | 30.0% |
| !! | GTTCCTTTTTAATTCAAACG+CGG | - | tig0017500:16829-16848 | Msa1361480:intergenic | 30.0% |
| ! | TTTTCTCTGGTGTATCAAAT+AGG | + | tig0017500:16862-16881 | Msa1361480:CDS | 30.0% |
| AAGAAGAAGAAGAAGAATGG+AGG | - | tig0017500:9602-9621 | Msa1361480:intergenic | 35.0% | |
| GAGAAGAAGAAGAAGAAGAA+TGG | - | tig0017500:9605-9624 | Msa1361480:intergenic | 35.0% | |
| TAGGTAACAATGTTTGAACC+GGG | - | tig0017500:9870-9889 | Msa1361480:intergenic | 35.0% | |
| GTAGGTAACAATGTTTGAAC+CGG | - | tig0017500:9871-9890 | Msa1361480:intergenic | 35.0% | |
| CAAACATTGTTACCTACTGT+TGG | + | tig0017500:9874-9893 | Msa1361480:CDS | 35.0% | |
| ! | TGGAGAAAATGGGAAGTTTT+AGG | - | tig0017500:9968-9987 | Msa1361480:intergenic | 35.0% |
| ! | AAAACTTCCCATTTTCTCCA+TGG | + | tig0017500:9968-9987 | Msa1361480:CDS | 35.0% |
| ATCTGTGCAGAACAAAGTTT+GGG | - | tig0017500:10174-10193 | Msa1361480:intergenic | 35.0% | |
| AATCTGTGCAGAACAAAGTT+TGG | - | tig0017500:10175-10194 | Msa1361480:intergenic | 35.0% | |
| AACTTTGTTCTGCACAGATT+AGG | + | tig0017500:10175-10194 | Msa1361480:CDS | 35.0% | |
| !!! | AGGTTTTATTGTTGTTGTGG+AGG | + | tig0017500:10294-10313 | Msa1361480:intron | 35.0% |
| !! | GCTGTGACAAAGATTGATTT+TGG | + | tig0017500:10405-10424 | Msa1361480:intron | 35.0% |
| !! | ATTTGGTGCTAAGAACTTTC+AGG | + | tig0017500:11073-11092 | Msa1361480:CDS | 35.0% |
| ! | CTTTTATCCTTCTCTTCAGA+TGG | + | tig0017500:11215-11234 | Msa1361480:CDS | 35.0% |
| GATGGAGTCTATTTGTATTC+AGG | + | tig0017500:11233-11252 | Msa1361480:CDS | 35.0% | |
| !! | ATATAAGAGAAGGTTGATGG+TGG | + | tig0017500:11582-11601 | Msa1361480:intron | 35.0% |
| TTTATAATAGGTGGGAAGGA+AGG | + | tig0017500:11677-11696 | Msa1361480:intron | 35.0% | |
| GAATCTATGAAATACCGAAG+CGG | - | tig0017500:11764-11783 | Msa1361480:intergenic | 35.0% | |
| !! | TAAAGAGCTAGTTTGCTGTT+GGG | - | tig0017500:11862-11881 | Msa1361480:intergenic | 35.0% |
| !! | ATAAAGAGCTAGTTTGCTGT+TGG | - | tig0017500:11863-11882 | Msa1361480:intergenic | 35.0% |
| TCTCTTCTATGGAGATAATG+AGG | + | tig0017500:11949-11968 | Msa1361480:CDS | 35.0% | |
| GAGATAATGAGGTCTATATC+AGG | + | tig0017500:11960-11979 | Msa1361480:CDS | 35.0% | |
| !! | CATAATATTGTTTCTGGGGT+CGG | + | tig0017500:12014-12033 | Msa1361480:intron | 35.0% |
| TATTCTCAGCATGTTAGTTG+TGG | - | tig0017500:12224-12243 | Msa1361480:intergenic | 35.0% | |
| GTATGCCACATATCCTTATT+TGG | + | tig0017500:12254-12273 | Msa1361480:intron | 35.0% | |
| ATTTCTTGAGAAGACAAAGG+AGG | - | tig0017500:12605-12624 | Msa1361480:intergenic | 35.0% | |
| TAGCAAACAAGCTGTAGAAT+TGG | - | tig0017500:12706-12725 | Msa1361480:intergenic | 35.0% | |
| !!! | CAAGGAGTGTTTTTAAAGGA+AGG | - | tig0017500:13107-13126 | Msa1361480:intergenic | 35.0% |
| ! | CTTCCTTTAAAAACACTCCT+TGG | + | tig0017500:13105-13124 | Msa1361480:intron | 35.0% |
| !!! | ATCCCAAGGAGTGTTTTTAA+AGG | - | tig0017500:13111-13130 | Msa1361480:intergenic | 35.0% |
| AGCCTTCAAAATTGAACACA+TGG | + | tig0017500:13157-13176 | Msa1361480:intron | 35.0% | |
| GCCTTCAAAATTGAACACAT+GGG | + | tig0017500:13158-13177 | Msa1361480:intron | 35.0% | |
| ! | ACCCATGTGTTCAATTTTGA+AGG | - | tig0017500:13162-13181 | Msa1361480:intergenic | 35.0% |
| AAATTATCAACCAGTTGACG+AGG | + | tig0017500:13224-13243 | Msa1361480:CDS | 35.0% | |
| ! | GGTGGACATTGAAAATCTTT+TGG | - | tig0017500:13514-13533 | Msa1361480:intergenic | 35.0% |
| ! | ATCTTATGGTGGAGATTTCA+AGG | + | tig0017500:13763-13782 | Msa1361480:CDS | 35.0% |
| TTCTTGCTCTCTTTCAGATA+TGG | + | tig0017500:13855-13874 | Msa1361480:intron | 35.0% | |
| TCTTGCTCTCTTTCAGATAT+GGG | + | tig0017500:13856-13875 | Msa1361480:intron | 35.0% | |
| ! | AACTAAAATTCCGACTTGTC+TGG | - | tig0017500:13910-13929 | Msa1361480:intergenic | 35.0% |
| !! | AGACAAGTCGGAATTTTAGT+TGG | + | tig0017500:13909-13928 | Msa1361480:CDS | 35.0% |
| !!! | GAAGGCAAAGCTTTAAGTTT+TGG | - | tig0017500:14032-14051 | Msa1361480:intergenic | 35.0% |
| ! | TAAAAATGTAGGATTAGCGG+TGG | + | tig0017500:14144-14163 | Msa1361480:intron | 35.0% |
| TCTTACTGAAGATACACCAA+GGG | - | tig0017500:14238-14257 | Msa1361480:intergenic | 35.0% | |
| ATCTTACTGAAGATACACCA+AGG | - | tig0017500:14239-14258 | Msa1361480:intergenic | 35.0% | |
| CCACAATGTAATAACAGTGT+CGG | - | tig0017500:14394-14413 | Msa1361480:intergenic | 35.0% | |
| CGACACTGTTATTACATTGT+GGG | + | tig0017500:14392-14411 | Msa1361480:CDS | 35.0% | |
| AGAGTTCAAAAAATCACCGA+TGG | - | tig0017500:14459-14478 | Msa1361480:intergenic | 35.0% | |
| TGGAGTCTTCATGAAGATTA+TGG | + | tig0017500:14625-14644 | Msa1361480:intron | 35.0% | |
| ATGAAGATTATGGCTGCTAT+TGG | + | tig0017500:14635-14654 | Msa1361480:intron | 35.0% | |
| GCAGCAATGCTTACATTTAT+TGG | + | tig0017500:14660-14679 | Msa1361480:intron | 35.0% | |
| GAATGCATGCCTATAAATGT+TGG | + | tig0017500:14789-14808 | Msa1361480:intron | 35.0% | |
| ! | CATGCCTATAAATGTTGGTT+TGG | + | tig0017500:14794-14813 | Msa1361480:intron | 35.0% |
| GAACCCAAACCAACATTTAT+AGG | - | tig0017500:14801-14820 | Msa1361480:intergenic | 35.0% | |
| !! | TGGTTTGGGTTCTGTATTTT+AGG | + | tig0017500:14809-14828 | Msa1361480:intron | 35.0% |
| !! | GGTTTGGGTTCTGTATTTTA+GGG | + | tig0017500:14810-14829 | Msa1361480:intron | 35.0% |
| GGTTACAAACAAGGACTATA+CGG | - | tig0017500:15161-15180 | Msa1361480:intergenic | 35.0% | |
| TGAGTCATAGGTTACAAACA+AGG | - | tig0017500:15170-15189 | Msa1361480:intergenic | 35.0% | |
| GTAACCTATGACTCATTGAA+TGG | + | tig0017500:15175-15194 | Msa1361480:intron | 35.0% | |
| AACCTATGACTCATTGAATG+GGG | + | tig0017500:15177-15196 | Msa1361480:intron | 35.0% | |
| ! | AACAGACGTTCCTTTGATTT+GGG | - | tig0017500:15293-15312 | Msa1361480:intergenic | 35.0% |
| AAACAGACGTTCCTTTGATT+TGG | - | tig0017500:15294-15313 | Msa1361480:intergenic | 35.0% | |
| TCAAAGGAACGTCTGTTTAA+AGG | + | tig0017500:15296-15315 | Msa1361480:CDS | 35.0% | |
| ! | GTGTTAATTTCTGAGAAGCA+TGG | + | tig0017500:15595-15614 | Msa1361480:intron | 35.0% |
| ATTGTCTGAGAGATAGAAAC+TGG | + | tig0017500:15967-15986 | Msa1361480:intron | 35.0% | |
| TTGTCTGAGAGATAGAAACT+GGG | + | tig0017500:15968-15987 | Msa1361480:intron | 35.0% | |
| CATGGTTAAAGAATCCATTC+CGG | - | tig0017500:16389-16408 | Msa1361480:intergenic | 35.0% | |
| TTGTCTTACTCTCCTTATTC+AGG | + | tig0017500:16440-16459 | Msa1361480:intron | 35.0% | |
| !!! | GGGAGCATTGCTTTTATTAA+AGG | + | tig0017500:16471-16490 | Msa1361480:CDS | 35.0% |
| TCTCTTTGATCCATATGACA+AGG | + | tig0017500:16545-16564 | Msa1361480:CDS | 35.0% | |
| TGAGCTTAATATGACTATGC+AGG | + | tig0017500:16575-16594 | Msa1361480:CDS | 35.0% | |
| TCCACAATTTCAGGACAATT+TGG | + | tig0017500:16777-16796 | Msa1361480:intron | 35.0% | |
| TCCAAATTGTCCTGAAATTG+TGG | - | tig0017500:16781-16800 | Msa1361480:intergenic | 35.0% | |
| ! | AAGACATCATCAGTTTTCTC+TGG | + | tig0017500:16849-16868 | Msa1361480:CDS | 35.0% |
| CTTGGGAAACCATATTTAGT+GGG | + | tig0017500:16886-16905 | Msa1361480:CDS | 35.0% | |
| ATGTGATGACCCACTAAATA+TGG | - | tig0017500:16898-16917 | Msa1361480:intergenic | 35.0% | |
| ! | TTCAGAACACAATTTGGTGA+GGG | - | tig0017500:16931-16950 | Msa1361480:intergenic | 35.0% |
| ! | ATTCAGAACACAATTTGGTG+AGG | - | tig0017500:16932-16951 | Msa1361480:intergenic | 35.0% |
| TGAATTTATGGAGTCTCTGA+TGG | + | tig0017500:16947-16966 | Msa1361480:CDS | 35.0% | |
| CTGGAACTGTGTGAATTTCA+GGG | - | tig0017500:9633-9652 | Msa1361480:intergenic | 40.0% | |
| ACTGGAACTGTGTGAATTTC+AGG | - | tig0017500:9634-9653 | Msa1361480:intergenic | 40.0% | |
| TTACAAGTTTCCTCCCTTGA+CGG | + | tig0017500:9810-9829 | Msa1361480:CDS | 40.0% | |
| AGGTAACAATGTTTGAACCG+GGG | - | tig0017500:9869-9888 | Msa1361480:intergenic | 40.0% | |
| !! | GAGAGTACCATGGAGAAAAT+GGG | - | tig0017500:9978-9997 | Msa1361480:intergenic | 40.0% |
| !! | AGAGAGTACCATGGAGAAAA+TGG | - | tig0017500:9979-9998 | Msa1361480:intergenic | 40.0% |
| GATACCATCGTTATTGTCAC+CGG | + | tig0017500:10077-10096 | Msa1361480:CDS | 40.0% | |
| GGTTAAAAGTGGTGTATGCT+TGG | + | tig0017500:10426-10445 | Msa1361480:intron | 40.0% | |
| !!! | CGAGTGTATGTTTGGTTTTG+CGG | + | tig0017500:10484-10503 | Msa1361480:intron | 40.0% |
| !!! | TTTGGTTTTGCGGTGACAAA+AGG | + | tig0017500:10494-10513 | Msa1361480:intron | 40.0% |
| ! | TGGGAAATTTCTGGGCATAA+AGG | + | tig0017500:10881-10900 | Msa1361480:CDS | 40.0% |
| GCAGAATTAGAGTCCACTTT+AGG | - | tig0017500:10936-10955 | Msa1361480:intergenic | 40.0% | |
| ATGGAATGCAAGAACGGAAA+AGG | - | tig0017500:10994-11013 | Msa1361480:intergenic | 40.0% | |
| AGTTGGATGGAATGCAAGAA+CGG | - | tig0017500:11000-11019 | Msa1361480:intergenic | 40.0% | |
| CAGAACATCAATGACTGATG+AGG | + | tig0017500:11115-11134 | Msa1361480:CDS | 40.0% | |
| ATGCCATGTGGAACATGATT+CGG | - | tig0017500:11174-11193 | Msa1361480:intergenic | 40.0% | |
| AATCATGTTCCACATGGCAT+TGG | + | tig0017500:11174-11193 | Msa1361480:CDS | 40.0% | |
| ATAGACTCCATCTGAAGAGA+AGG | - | tig0017500:11225-11244 | Msa1361480:intergenic | 40.0% | |
| TCCTGTGTCACATGTATTAG+AGG | + | tig0017500:11395-11414 | Msa1361480:intron | 40.0% | |
| TGTGTCACATGTATTAGAGG+CGG | + | tig0017500:11398-11417 | Msa1361480:intron | 40.0% | |
| AACCGAGTCTTTCAAAAAGC+AGG | + | tig0017500:11547-11566 | Msa1361480:intron | 40.0% | |
| !!! | CACCTGCTTTTTGAAAGACT+CGG | - | tig0017500:11552-11571 | Msa1361480:intergenic | 40.0% |
| ! | ATTCTCAGCAAAGTTGGTTG+TGG | - | tig0017500:12412-12431 | Msa1361480:intergenic | 40.0% |
| ! | TACAGCTTGTTTGCTAATCG+TGG | + | tig0017500:12710-12729 | Msa1361480:CDS | 40.0% |
| TGCTAATCGTGGACTTTATG+AGG | + | tig0017500:12721-12740 | Msa1361480:CDS | 40.0% | |
| TTGATGTTCAAAAGCCCACT+TGG | + | tig0017500:12751-12770 | Msa1361480:intron | 40.0% | |
| TGATGTTCAAAAGCCCACTT+GGG | + | tig0017500:12752-12771 | Msa1361480:intron | 40.0% | |
| ! | ATTCTCTCCGGTGTCAATTT+AGG | + | tig0017500:12836-12855 | Msa1361480:intron | 40.0% |
| TAGGGTCTAGTCAATGATTC+AGG | + | tig0017500:12965-12984 | Msa1361480:intron | 40.0% | |
| AGGGTCTAGTCAATGATTCA+GGG | + | tig0017500:12966-12985 | Msa1361480:intron | 40.0% | |
| TAGTCAATGATTCAGGGAAC+TGG | + | tig0017500:12972-12991 | Msa1361480:intron | 40.0% | |
| ATGATTCAGGGAACTGGTTA+AGG | + | tig0017500:12978-12997 | Msa1361480:intron | 40.0% | |
| TCATCAAATAACGTGGTTGC+AGG | + | tig0017500:13365-13384 | Msa1361480:intron | 40.0% | |
| TTCAGGTAGCTTGACTTCTA+CGG | - | tig0017500:13439-13458 | Msa1361480:intergenic | 40.0% | |
| AAGCTACCTGAAGAAGGAAT+AGG | + | tig0017500:13447-13466 | Msa1361480:CDS | 40.0% | |
| CCTGTGAGGTTCATAAACAA+GGG | - | tig0017500:13535-13554 | Msa1361480:intergenic | 40.0% | |
| ACCTGTGAGGTTCATAAACA+AGG | - | tig0017500:13536-13555 | Msa1361480:intergenic | 40.0% | |
| TCTTTCAGATATGGGTTTGC+AGG | + | tig0017500:13864-13883 | Msa1361480:intron | 40.0% | |
| CTTTCAGATATGGGTTTGCA+GGG | + | tig0017500:13865-13884 | Msa1361480:intron | 40.0% | |
| ACTTATATGACCCAACAGCA+TGG | - | tig0017500:13940-13959 | Msa1361480:intergenic | 40.0% | |
| TGGTGAAACTTGCATACTGA+AGG | - | tig0017500:14050-14069 | Msa1361480:intergenic | 40.0% | |
| ACTGTTGGGCTGTAATAAAG+TGG | + | tig0017500:14087-14106 | Msa1361480:intron | 40.0% | |
| CTTACTGAAGATACACCAAG+GGG | - | tig0017500:14237-14256 | Msa1361480:intergenic | 40.0% | |
| CCGACACTGTTATTACATTG+TGG | + | tig0017500:14391-14410 | Msa1361480:CDS | 40.0% | |
| CAATGAGCTCATTCTTGTCA+GGG | - | tig0017500:14419-14438 | Msa1361480:intergenic | 40.0% | |
| ! | AATGAGCTCATTGCTGTTGT+AGG | + | tig0017500:14426-14445 | Msa1361480:CDS | 40.0% |
| TGTTTGTGCGTTTCTTCACA+CGG | + | tig0017500:14502-14521 | Msa1361480:intron | 40.0% | |
| AAGATTATGGCTGCTATTGG+AGG | + | tig0017500:14638-14657 | Msa1361480:intron | 40.0% | |
| ATGAGGACAGGTACAACTTA+AGG | - | tig0017500:14838-14857 | Msa1361480:intergenic | 40.0% | |
| AAATTAGACCAACAGGGATG+AGG | - | tig0017500:14855-14874 | Msa1361480:intergenic | 40.0% | |
| TATTCTTTCAGCCAATTGGG+AGG | + | tig0017500:14877-14896 | Msa1361480:intron | 40.0% | |
| TGGTGCAGAACCATAAGATA+CGG | - | tig0017500:14937-14956 | Msa1361480:intergenic | 40.0% | |
| TGTCAAAGTTAGCTGCATCT+TGG | + | tig0017500:14976-14995 | Msa1361480:CDS | 40.0% | |
| TAGCTGCATCTTGGTCATAT+AGG | + | tig0017500:14985-15004 | Msa1361480:CDS | 40.0% | |
| TACCCCATTCAATGAGTCAT+AGG | - | tig0017500:15182-15201 | Msa1361480:intergenic | 40.0% | |
| TGCTCTCATTCCCAAATCAA+AGG | + | tig0017500:15280-15299 | Msa1361480:CDS | 40.0% | |
| GAACGTCTGTTTAAAGGTGA+TGG | + | tig0017500:15302-15321 | Msa1361480:CDS | 40.0% | |
| TTTCTGTGTTGCATCGTGTT+TGG | + | tig0017500:15664-15683 | Msa1361480:intron | 40.0% | |
| TCTTTGTGTTGCATCGTGTT+TGG | + | tig0017500:15705-15724 | Msa1361480:intron | 40.0% | |
| CATCGTGTTTGGTAAAGAGA+AGG | + | tig0017500:15716-15735 | Msa1361480:intron | 40.0% | |
| ! | AGCTTGCACTTATTTCTTCG+CGG | - | tig0017500:15937-15956 | Msa1361480:intergenic | 40.0% |
| TACCAAAACATGGACAAGAG+TGG | - | tig0017500:16249-16268 | Msa1361480:intergenic | 40.0% | |
| !!! | ATTTTTAGCCAGTCTAGTGC+CGG | + | tig0017500:16367-16386 | Msa1361480:intron | 40.0% |
| ACTATGCAGGATGATCTTGT+TGG | + | tig0017500:16588-16607 | Msa1361480:CDS | 40.0% | |
| CTATGCAGGATGATCTTGTT+GGG | + | tig0017500:16589-16608 | Msa1361480:CDS | 40.0% | |
| CTTGTTGGGCTTGAAGAAAA+TGG | + | tig0017500:16603-16622 | Msa1361480:CDS | 40.0% | |
| TTGGGCTTGAAGAAAATGGT+GGG | + | tig0017500:16607-16626 | Msa1361480:intron | 40.0% | |
| TTCCTCTTCTCCACAATTTC+AGG | + | tig0017500:16768-16787 | Msa1361480:intron | 40.0% | |
| TGCCCGCGTTTGAATTAAAA+AGG | + | tig0017500:16823-16842 | Msa1361480:CDS | 40.0% | |
| TGGTGTATCAAATAGGCCTT+GGG | + | tig0017500:16869-16888 | Msa1361480:CDS | 40.0% | |
| CCACTAAATATGGTTTCCCA+AGG | - | tig0017500:16888-16907 | Msa1361480:intergenic | 40.0% | |
| CCTTGGGAAACCATATTTAG+TGG | + | tig0017500:16885-16904 | Msa1361480:CDS | 40.0% | |
| ! | TCAGAACACAATTTGGTGAG+GGG | - | tig0017500:16930-16949 | Msa1361480:intergenic | 40.0% |
| ! | AGCGTTTTGTAGCTTGGAAC+TGG | - | tig0017500:9652-9671 | Msa1361480:intergenic | 45.0% |
| ! | AAACGCAGCGTTTTGTAGCT+TGG | - | tig0017500:9658-9677 | Msa1361480:intergenic | 45.0% |
| TTTGTCCTCCCTTCATCGTT+CGG | - | tig0017500:9695-9714 | Msa1361480:intergenic | 45.0% | |
| AAGGGAGGAAACTTGTAAGG+CGG | - | tig0017500:9808-9827 | Msa1361480:intergenic | 45.0% | |
| GTCAAGGGAGGAAACTTGTA+AGG | - | tig0017500:9811-9830 | Msa1361480:intergenic | 45.0% | |
| TGAGAAGGGAGAAATCCCAA+TGG | - | tig0017500:9926-9945 | Msa1361480:intergenic | 45.0% | |
| TCTTCCGGTGACAATAACGA+TGG | - | tig0017500:10084-10103 | Msa1361480:intergenic | 45.0% | |
| CACAGGGACTAACGATCAAA+GGG | - | tig0017500:10863-10882 | Msa1361480:intergenic | 45.0% | |
| CTTTGATCGTTAGTCCCTGT+GGG | + | tig0017500:10862-10881 | Msa1361480:CDS | 45.0% | |
| TAGTCCCTGTGGGAAATTTC+TGG | + | tig0017500:10872-10891 | Msa1361480:CDS | 45.0% | |
| AGTCCCTGTGGGAAATTTCT+GGG | + | tig0017500:10873-10892 | Msa1361480:CDS | 45.0% | |
| ATGCCCAGAAATTTCCCACA+GGG | - | tig0017500:10879-10898 | Msa1361480:intergenic | 45.0% | |
| TATGCCCAGAAATTTCCCAC+AGG | - | tig0017500:10880-10899 | Msa1361480:intergenic | 45.0% | |
| TTGCATTCCATCCAACTGAG+AGG | + | tig0017500:11003-11022 | Msa1361480:CDS | 45.0% | |
| ACTGATGAGGAATGTAAGCC+TGG | + | tig0017500:11128-11147 | Msa1361480:CDS | 45.0% | |
| CTGATGAGGAATGTAAGCCT+GGG | + | tig0017500:11129-11148 | Msa1361480:CDS | 45.0% | |
| TGATGAGGAATGTAAGCCTG+GGG | + | tig0017500:11130-11149 | Msa1361480:CDS | 45.0% | |
| ! | TCATCATTTTGCCTTACCCC+AGG | - | tig0017500:11149-11168 | Msa1361480:intergenic | 45.0% |
| ATGCCGAATCATGTTCCACA+TGG | + | tig0017500:11168-11187 | Msa1361480:CDS | 45.0% | |
| AACTGGACAATGATTGTCCG+CGG | + | tig0017500:11293-11312 | Msa1361480:intron | 45.0% | |
| GCCTCTAATACATGTGACAC+AGG | - | tig0017500:11399-11418 | Msa1361480:intergenic | 45.0% | |
| CAAGAATTGGATCTCCGCTT+CGG | + | tig0017500:11747-11766 | Msa1361480:CDS | 45.0% | |
| TCCAGATCCTTCATTTGCCT+CGG | + | tig0017500:11784-11803 | Msa1361480:CDS | 45.0% | |
| GAGGTCTATATCAGGGATCA+AGG | + | tig0017500:11968-11987 | Msa1361480:CDS | 45.0% | |
| CATGCAAACTTGCATCACGT+CGG | + | tig0017500:12148-12167 | Msa1361480:intron | 45.0% | |
| CATGCAAACTTGCATCACGT+TGG | + | tig0017500:12148-12167 | Msa1361480:intron | 45.0% | |
| GGCTGGAAAAAAGGAATGTC+AGG | - | tig0017500:12584-12603 | Msa1361480:intergenic | 45.0% | |
| GACAAAGGAGGCTGGAAAAA+AGG | - | tig0017500:12593-12612 | Msa1361480:intergenic | 45.0% | |
| TAAACCAGAAGAGCGGTCAA+AGG | - | tig0017500:12654-12673 | Msa1361480:intergenic | 45.0% | |
| ! | TCTCCGGTGTCAATTTAGGT+GGG | + | tig0017500:12840-12859 | Msa1361480:intron | 45.0% |
| TAGCCCACCTAAATTGACAC+CGG | - | tig0017500:12846-12865 | Msa1361480:intergenic | 45.0% | |
| TAAAGGCAAGGCAAATCCCA+AGG | - | tig0017500:13125-13144 | Msa1361480:intergenic | 45.0% | |
| ! | ATGGTGGAGTTGTCTACTGA+CGG | + | tig0017500:13399-13418 | Msa1361480:CDS | 45.0% |
| TCTACTGACGGCTCTATGAT+GGG | + | tig0017500:13411-13430 | Msa1361480:CDS | 45.0% | |
| GAAGTCAAGCTACCTGAAGA+AGG | + | tig0017500:13441-13460 | Msa1361480:CDS | 45.0% | |
| CTACCTGAAGAAGGAATAGG+AGG | + | tig0017500:13450-13469 | Msa1361480:CDS | 45.0% | |
| AGACCTCCTATTCCTTCTTC+AGG | - | tig0017500:13456-13475 | Msa1361480:intergenic | 45.0% | |
| GTGAGGTTCATAAACAAGGG+TGG | - | tig0017500:13532-13551 | Msa1361480:intergenic | 45.0% | |
| ! | CCCTTGTTTATGAACCTCAC+AGG | + | tig0017500:13532-13551 | Msa1361480:CDS | 45.0% |
| GGTCGGATGAAACGTAATAG+CGG | - | tig0017500:13723-13742 | Msa1361480:intergenic | 45.0% | |
| AGCAGAAAGACCAGACAAGT+CGG | + | tig0017500:13897-13916 | Msa1361480:CDS | 45.0% | |
| CAACAGTCAAGAGATGACTG+GGG | - | tig0017500:14074-14093 | Msa1361480:intergenic | 45.0% | |
| CCAACAGTCAAGAGATGACT+GGG | - | tig0017500:14075-14094 | Msa1361480:intergenic | 45.0% | |
| CCAGTCATCTCTTGACTGTT+GGG | + | tig0017500:14073-14092 | Msa1361480:intron | 45.0% | |
| GCAATGAGCTCATTCTTGTC+AGG | - | tig0017500:14420-14439 | Msa1361480:intergenic | 45.0% | |
| TGTTGTAGGAGAGACTCCAT+CGG | + | tig0017500:14440-14459 | Msa1361480:CDS | 45.0% | |
| GTTTGTGCGTTTCTTCACAC+GGG | + | tig0017500:14503-14522 | Msa1361480:intron | 45.0% | |
| TTTGTGCGTTTCTTCACACG+GGG | + | tig0017500:14504-14523 | Msa1361480:intron | 45.0% | |
| ACAAAGATGAGCCTCCCAAT+TGG | - | tig0017500:14891-14910 | Msa1361480:intergenic | 45.0% | |
| ATTGGGAGGCTCATCTTTGT+TGG | + | tig0017500:14891-14910 | Msa1361480:CDS | 45.0% | |
| ATACTCCAAACAGACAGCTG+TGG | - | tig0017500:14957-14976 | Msa1361480:intergenic | 45.0% | |
| CAATACCTTCGTTACAGACC+AGG | - | tig0017500:15372-15391 | Msa1361480:intergenic | 45.0% | |
| ! | ATTGAGTTGTGTGAGTCGCT+TGG | + | tig0017500:15805-15824 | Msa1361480:intron | 45.0% |
| CAAAACATGGACAAGAGTGG+AGG | - | tig0017500:16246-16265 | Msa1361480:intergenic | 45.0% | |
| ! | CTCCACTCTTGTCCATGTTT+TGG | + | tig0017500:16244-16263 | Msa1361480:intron | 45.0% |
| TACTCTCCTTATTCAGGCCA+AGG | + | tig0017500:16446-16465 | Msa1361480:intron | 45.0% | |
| ACTCTCCTTATTCAGGCCAA+GGG | + | tig0017500:16447-16466 | Msa1361480:intron | 45.0% | |
| TCACGTGCTTCCTTGTCATA+TGG | - | tig0017500:16558-16577 | Msa1361480:intergenic | 45.0% | |
| GTTGGGCTTGAAGAAAATGG+TGG | + | tig0017500:16606-16625 | Msa1361480:intron | 45.0% | |
| GTCCTGAAATTGTGGAGAAG+AGG | - | tig0017500:16773-16792 | Msa1361480:intergenic | 45.0% | |
| CTGGTGTATCAAATAGGCCT+TGG | + | tig0017500:16868-16887 | Msa1361480:CDS | 45.0% | |
| TGGAGTCTCTGATGGAGAAA+AGG | + | tig0017500:16955-16974 | Msa1361480:CDS | 45.0% | |
| GATGGAGAAAAGGACATCGA+TGG | + | tig0017500:16965-16984 | Msa1361480:CDS | 45.0% | |
| !!! | ATTAATTTATAATTACTTTT+AGG | + | tig0017500:12946-12965 | Msa1361480:intron | 5.0% |
| !!! | TTAATTTATAATTACTTTTA+GGG | + | tig0017500:12947-12966 | Msa1361480:intron | 5.0% |
| !! | TAATATTTAATAGAAAAAAA+TGG | - | tig0017500:15408-15427 | Msa1361480:intergenic | 5.0% |
| !! | TAAAGTAAAAAAAAAAAAAA+AGG | + | tig0017500:16152-16171 | Msa1361480:intron | 5.0% |
| !! | AAGAAGAATGGAGGCGCCAA+GGG | - | tig0017500:9593-9612 | Msa1361480:intergenic | 50.0% |
| !! | ACTGAGCACCGAACGATGAA+GGG | + | tig0017500:9684-9703 | Msa1361480:exon | 50.0% |
| CCTCCATCTTTCTCCAACTC+CGG | + | tig0017500:9729-9748 | Msa1361480:CDS | 50.0% | |
| !! | AGTATCGGTGTGACCGTCAA+GGG | - | tig0017500:9826-9845 | Msa1361480:intergenic | 50.0% |
| !! | GATGACGGAGGTGACAGTAT+CGG | - | tig0017500:9841-9860 | Msa1361480:intergenic | 50.0% |
| GAAGGGAGAAATCCCAATGG+CGG | - | tig0017500:9923-9942 | Msa1361480:intergenic | 50.0% | |
| !! | GAGAGAGAGAGAGAGTACCA+TGG | - | tig0017500:9988-10007 | Msa1361480:intergenic | 50.0% |
| GGACTAACGATCAAAGGGTG+AGG | - | tig0017500:10858-10877 | Msa1361480:intergenic | 50.0% | |
| CCACAGGGACTAACGATCAA+AGG | - | tig0017500:10864-10883 | Msa1361480:intergenic | 50.0% | |
| CCTTTGATCGTTAGTCCCTG+TGG | + | tig0017500:10861-10880 | Msa1361480:CDS | 50.0% | |
| CCACAATCCTCTCAGTTGGA+TGG | - | tig0017500:11013-11032 | Msa1361480:intergenic | 50.0% | |
| CCATCCAACTGAGAGGATTG+TGG | + | tig0017500:11010-11029 | Msa1361480:CDS | 50.0% | |
| AGGAATGTAAGCCTGGGGTA+AGG | + | tig0017500:11135-11154 | Msa1361480:CDS | 50.0% | |
| ! | ATCAGAGTGCCAATGCCATG+TGG | - | tig0017500:11186-11205 | Msa1361480:intergenic | 50.0% |
| AGGAAGGAGTTCTCGTGCTT+TGG | + | tig0017500:11693-11712 | Msa1361480:CDS | 50.0% | |
| CGAAGCGGAGATCCAATTCT+TGG | - | tig0017500:11749-11768 | Msa1361480:intergenic | 50.0% | |
| ACCGAGGCAAATGAAGGATC+TGG | - | tig0017500:11788-11807 | Msa1361480:intergenic | 50.0% | |
| ACTCTCACCGAGGCAAATGA+AGG | - | tig0017500:11794-11813 | Msa1361480:intergenic | 50.0% | |
| CATAAAGGCAACTCTCACCG+AGG | - | tig0017500:11804-11823 | Msa1361480:intergenic | 50.0% | |
| !! | TTGTTTCTGGGGTCGGTCAT+CGG | + | tig0017500:12021-12040 | Msa1361480:intron | 50.0% |
| CTTGAGAAGACAAAGGAGGC+TGG | - | tig0017500:12601-12620 | Msa1361480:intergenic | 50.0% | |
| !! | TGACCGCTCTTCTGGTTTAG+TGG | + | tig0017500:12655-12674 | Msa1361480:CDS | 50.0% |
| CAGCCACTAAACCAGAAGAG+CGG | - | tig0017500:12661-12680 | Msa1361480:intergenic | 50.0% | |
| GTTCAAAAGCCCACTTGGGT+TGG | + | tig0017500:12756-12775 | Msa1361480:intron | 50.0% | |
| !! | GTGGTATTGGCTTGGGTCTT+GGG | + | tig0017500:12783-12802 | Msa1361480:intron | 50.0% |
| GAATCGAACCTGAGACCTTG+CGG | - | tig0017500:12820-12839 | Msa1361480:intergenic | 50.0% | |
| GTCTCAGGTTCGATTCTCTC+CGG | + | tig0017500:12824-12843 | Msa1361480:intron | 50.0% | |
| ! | CTCTCCGGTGTCAATTTAGG+TGG | + | tig0017500:12839-12858 | Msa1361480:intron | 50.0% |
| TCAACCAGTTGACGAGGTCA+CGG | + | tig0017500:13230-13249 | Msa1361480:CDS | 50.0% | |
| GTTGCAGGTAGTAGTGACCA+TGG | + | tig0017500:13380-13399 | Msa1361480:intron | 50.0% | |
| GTCAGTAGACAACTCCACCA+TGG | - | tig0017500:13400-13419 | Msa1361480:intergenic | 50.0% | |
| GTCTACTGACGGCTCTATGA+TGG | + | tig0017500:13410-13429 | Msa1361480:CDS | 50.0% | |
| GAACCTCACAGGTGTGTCAA+CGG | + | tig0017500:13543-13562 | Msa1361480:intron | 50.0% | |
| AATCCGTTGACACACCTGTG+AGG | - | tig0017500:13549-13568 | Msa1361480:intergenic | 50.0% | |
| GTTTCATCCGACCCGTCATA+TGG | + | tig0017500:13730-13749 | Msa1361480:CDS | 50.0% | |
| ! | ATGCGCTGACAGCCATATGA+CGG | - | tig0017500:13745-13764 | Msa1361480:intergenic | 50.0% |
| ATGGCTGTCAGCGCATCTTA+TGG | + | tig0017500:13749-13768 | Msa1361480:CDS | 50.0% | |
| AGTTGGATGTGCCATGCTGT+TGG | + | tig0017500:13926-13945 | Msa1361480:CDS | 50.0% | |
| GTTGGATGTGCCATGCTGTT+GGG | + | tig0017500:13927-13946 | Msa1361480:CDS | 50.0% | |
| CCCAGTCATCTCTTGACTGT+TGG | + | tig0017500:14072-14091 | Msa1361480:intron | 50.0% | |
| CCCAACAGTCAAGAGATGAC+TGG | - | tig0017500:14076-14095 | Msa1361480:intergenic | 50.0% | |
| TTTACCGTCATTTGGCCCCT+TGG | + | tig0017500:14219-14238 | Msa1361480:intron | 50.0% | |
| TACACCAAGGGGCCAAATGA+CGG | - | tig0017500:14226-14245 | Msa1361480:intergenic | 50.0% | |
| !!! | GCTGCTGCTTTTTCAGCTGA+TGG | + | tig0017500:14348-14367 | Msa1361480:CDS | 50.0% |
| ! | AGCTGATGGTTCTGTGCTTG+CGG | + | tig0017500:14362-14381 | Msa1361480:CDS | 50.0% |
| ATGCACAGGAAACAGCTGCA+TGG | - | tig0017500:15235-15254 | Msa1361480:intergenic | 50.0% | |
| CGCAACAGATCCTATTCCAG+TGG | + | tig0017500:15343-15362 | Msa1361480:CDS | 50.0% | |
| ATCCTATTCCAGTGGCTTCC+TGG | + | tig0017500:15351-15370 | Msa1361480:CDS | 50.0% | |
| TGGGCACATTACTTGACACG+AGG | + | tig0017500:15615-15634 | Msa1361480:intron | 50.0% | |
| AATCCATTCCGGCACTAGAC+TGG | - | tig0017500:16378-16397 | Msa1361480:intergenic | 50.0% | |
| TCCTTATTCAGGCCAAGGGA+GGG | + | tig0017500:16451-16470 | Msa1361480:intron | 50.0% | |
| AAAAGCAATGCTCCCTCCCT+TGG | - | tig0017500:16466-16485 | Msa1361480:intergenic | 50.0% | |
| AATTCAAACGCGGGCAACTC+TGG | - | tig0017500:16819-16838 | Msa1361480:intergenic | 50.0% | |
| ! | GAACACAATTTGGTGAGGGG+TGG | - | tig0017500:16927-16946 | Msa1361480:intergenic | 50.0% |
| !! | TTCAGGGGTACTACCTCCCT+TGG | + | tig0017500:9574-9593 | Msa1361480:five_prime_UTR | 55.0% |
| !! | GAAGAAGAATGGAGGCGCCA+AGG | - | tig0017500:9594-9613 | Msa1361480:intergenic | 55.0% |
| !! | CACTGAGCACCGAACGATGA+AGG | + | tig0017500:9683-9702 | Msa1361480:exon | 55.0% |
| CCGGAGTTGGAGAAAGATGG+AGG | - | tig0017500:9732-9751 | Msa1361480:intergenic | 55.0% | |
| TCGCCGGAGTTGGAGAAAGA+TGG | - | tig0017500:9735-9754 | Msa1361480:intergenic | 55.0% | |
| !! | GGTGGTGGAGAAGATAGCGA+CGG | - | tig0017500:9784-9803 | Msa1361480:intergenic | 55.0% |
| ! | AACTTGTAAGGCGGTGGTGG+TGG | - | tig0017500:9799-9818 | Msa1361480:intergenic | 55.0% |
| GGAAACTTGTAAGGCGGTGG+TGG | - | tig0017500:9802-9821 | Msa1361480:intergenic | 55.0% | |
| GGAGGAAACTTGTAAGGCGG+TGG | - | tig0017500:9805-9824 | Msa1361480:intergenic | 55.0% | |
| !! | CAGTATCGGTGTGACCGTCA+AGG | - | tig0017500:9827-9846 | Msa1361480:intergenic | 55.0% |
| GAGGGAAGAGGTCCAACAGT+AGG | - | tig0017500:9889-9908 | Msa1361480:intergenic | 55.0% | |
| TGTTGGACCTCTTCCCTCGA+CGG | + | tig0017500:9891-9910 | Msa1361480:CDS | 55.0% | |
| ! | GGAGAAATCCCAATGGCGGA+TGG | - | tig0017500:9919-9938 | Msa1361480:intergenic | 55.0% |
| GCAGCCACAATCCTCTCAGT+TGG | - | tig0017500:11017-11036 | Msa1361480:intergenic | 55.0% | |
| ACTGAGAGGATTGTGGCTGC+AGG | + | tig0017500:11017-11036 | Msa1361480:CDS | 55.0% | |
| TTGTCCGCGGAGCTAGAACT+AGG | + | tig0017500:11306-11325 | Msa1361480:intron | 55.0% | |
| !! | ACAGCCTAGTTCTAGCTCCG+CGG | - | tig0017500:11313-11332 | Msa1361480:intergenic | 55.0% |
| GTGCTTTGGCAGCTAGACAC+CGG | + | tig0017500:11707-11726 | Msa1361480:CDS | 55.0% | |
| AAGAGCGGTCAAAGGCTGCT+TGG | - | tig0017500:12646-12665 | Msa1361480:intergenic | 55.0% | |
| !! | TTGGGTTGGCCTGGTGGTAT+TGG | + | tig0017500:12770-12789 | Msa1361480:intron | 55.0% |
| !! | TTGGCCTGGTGGTATTGGCT+TGG | + | tig0017500:12775-12794 | Msa1361480:intron | 55.0% |
| !! | TGGCCTGGTGGTATTGGCTT+GGG | + | tig0017500:12776-12795 | Msa1361480:intron | 55.0% |
| AGACCCAAGCCAATACCACC+AGG | - | tig0017500:12782-12801 | Msa1361480:intergenic | 55.0% | |
| !! | GGTGGTATTGGCTTGGGTCT+TGG | + | tig0017500:12782-12801 | Msa1361480:intron | 55.0% |
| CATACCGTGACCTCGTCAAC+TGG | - | tig0017500:13237-13256 | Msa1361480:intergenic | 55.0% | |
| GCAGGTAGTAGTGACCATGG+TGG | + | tig0017500:13383-13402 | Msa1361480:intron | 55.0% | |
| !! | CTGACAGCCATATGACGGGT+CGG | - | tig0017500:13740-13759 | Msa1361480:intergenic | 55.0% |
| ! | TGCGCTGACAGCCATATGAC+GGG | - | tig0017500:13744-13763 | Msa1361480:intergenic | 55.0% |
| GCTGTCAGCGCATCTTATGG+TGG | + | tig0017500:13752-13771 | Msa1361480:CDS | 55.0% | |
| AGTCAAGAGATGACTGGGGC+TGG | - | tig0017500:14070-14089 | Msa1361480:intergenic | 55.0% | |
| GTACCTGTCCTCATCCCTGT+TGG | + | tig0017500:14844-14863 | Msa1361480:intron | 55.0% | |
| AGACCAACAGGGATGAGGAC+AGG | - | tig0017500:14850-14869 | Msa1361480:intergenic | 55.0% | |
| CTGCACCACAGCTGTCTGTT+TGG | + | tig0017500:14949-14968 | Msa1361480:CDS | 55.0% | |
| GACCAGGAAGCCACTGGAAT+AGG | - | tig0017500:15356-15375 | Msa1361480:intergenic | 55.0% | |
| GTTACAGACCAGGAAGCCAC+TGG | - | tig0017500:15362-15381 | Msa1361480:intergenic | 55.0% | |
| GGCTTCCTGGTCTGTAACGA+AGG | + | tig0017500:15364-15383 | Msa1361480:CDS | 55.0% | |
| ! | TAGCCAGTCTAGTGCCGGAA+TGG | + | tig0017500:16372-16391 | Msa1361480:intron | 55.0% |
| CTCCTTATTCAGGCCAAGGG+AGG | + | tig0017500:16450-16469 | Msa1361480:intron | 55.0% | |
| TCCCTCCCTTGGCCTGAATA+AGG | - | tig0017500:16455-16474 | Msa1361480:intergenic | 55.0% | |
| !! | AAGAATGGAGGCGCCAAGGG+AGG | - | tig0017500:9590-9609 | Msa1361480:intergenic | 60.0% |
| !! | GAGCACCGAACGATGAAGGG+AGG | + | tig0017500:9687-9706 | Msa1361480:exon | 60.0% |
| TAGAAGACGGTCGCCGGAGT+TGG | - | tig0017500:9745-9764 | Msa1361480:intergenic | 60.0% | |
| TCCGGCGACCGTCTTCTAGT+CGG | + | tig0017500:9747-9766 | Msa1361480:CDS | 60.0% | |
| ! | GACCGTCTTCTAGTCGGCTC+CGG | + | tig0017500:9753-9772 | Msa1361480:CDS | 60.0% |
| TGCCGGAGCCGACTAGAAGA+CGG | - | tig0017500:9758-9777 | Msa1361480:intergenic | 60.0% | |
| ! | GAAGATAGCGACGGAGGTGC+CGG | - | tig0017500:9775-9794 | Msa1361480:intergenic | 60.0% |
| GGTGGAGAAGATAGCGACGG+AGG | - | tig0017500:9781-9800 | Msa1361480:intergenic | 60.0% | |
| ATCGGTGTGACCGTCAAGGG+AGG | - | tig0017500:9823-9842 | Msa1361480:intergenic | 60.0% | |
| TGAACCGGGGACGACGATGA+CGG | - | tig0017500:9856-9875 | Msa1361480:intergenic | 60.0% | |
| GTGGCTGCAGGCGATGTAAC+CGG | + | tig0017500:11029-11048 | Msa1361480:CDS | 60.0% | |
| GCAGCCTTTGACCGCTCTTC+TGG | + | tig0017500:12647-12666 | Msa1361480:CDS | 60.0% | |
| !! | AAAGCCCACTTGGGTTGGCC+TGG | + | tig0017500:12761-12780 | Msa1361480:intron | 60.0% |
| ACCACCAGGCCAACCCAAGT+GGG | - | tig0017500:12768-12787 | Msa1361480:intergenic | 60.0% | |
| TACCACCAGGCCAACCCAAG+TGG | - | tig0017500:12769-12788 | Msa1361480:intergenic | 60.0% | |
| TCGAACCTGAGACCTTGCGG+AGG | - | tig0017500:12817-12836 | Msa1361480:intergenic | 60.0% | |
| GCCGACTAGAAGACGGTCGC+CGG | - | tig0017500:9751-9770 | Msa1361480:intergenic | 65.0% | |
| ACCTCCGTCATCGTCGTCCC+CGG | + | tig0017500:9849-9868 | Msa1361480:CDS | 65.0% | |
| !! | GATGGTGCCGTCGAGGGAAG+AGG | - | tig0017500:9901-9920 | Msa1361480:intergenic | 65.0% |
| !! | ATGGCGGATGGTGCCGTCGA+GGG | - | tig0017500:9907-9926 | Msa1361480:intergenic | 65.0% |
| !! | AATGGCGGATGGTGCCGTCG+AGG | - | tig0017500:9908-9927 | Msa1361480:intergenic | 65.0% |
| TCGACGGCACCATCCGCCAT+TGG | + | tig0017500:9907-9926 | Msa1361480:CDS | 65.0% | |
| CGACGGCACCATCCGCCATT+GGG | + | tig0017500:9908-9927 | Msa1361480:CDS | 65.0% | |
| GTGCTCCTCCGCAAGGTCTC+AGG | + | tig0017500:12809-12828 | Msa1361480:intron | 65.0% | |
| ! | ACCGGGGACGACGATGACGG+AGG | - | tig0017500:9853-9872 | Msa1361480:intergenic | 70.0% |
| !! | GCCCACTTGGGTTGGCCTGG+TGG | + | tig0017500:12764-12783 | Msa1361480:intron | 70.0% |
| ! | TGGGAGCGTGCTCCTCCGCA+AGG | + | tig0017500:12802-12821 | Msa1361480:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017500 | gene | 9574 | 17000 | 9574 | ID=Msa1361480;Name=Msa1361480 |
| tig0017500 | mRNA | 9574 | 17000 | 9574 | ID=Msa1361480-mRNA-1;Parent=Msa1361480;Name=Msa1361480-mRNA-1;_AED=0.17;_eAED=0.17;_QI=125|0.85|0.86|1|1|1|15|5|811 |
| tig0017500 | exon | 9574 | 9989 | 9574 | ID=Msa1361480-mRNA-1:exon:12432;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 10075 | 10248 | 10075 | ID=Msa1361480-mRNA-1:exon:12433;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 10846 | 11254 | 10846 | ID=Msa1361480-mRNA-1:exon:12434;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 11687 | 11805 | 11687 | ID=Msa1361480-mRNA-1:exon:12435;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 11903 | 11989 | 11903 | ID=Msa1361480-mRNA-1:exon:12436;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 12602 | 12742 | 12602 | ID=Msa1361480-mRNA-1:exon:12437;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 13207 | 13251 | 13207 | ID=Msa1361480-mRNA-1:exon:12438;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 13387 | 13553 | 13387 | ID=Msa1361480-mRNA-1:exon:12439;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 13646 | 13784 | 13646 | ID=Msa1361480-mRNA-1:exon:12440;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 13872 | 13957 | 13872 | ID=Msa1361480-mRNA-1:exon:12441;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 14332 | 14461 | 14332 | ID=Msa1361480-mRNA-1:exon:12442;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 14888 | 15020 | 14888 | ID=Msa1361480-mRNA-1:exon:12443;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 15240 | 15385 | 15240 | ID=Msa1361480-mRNA-1:exon:12444;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 16462 | 16624 | 16462 | ID=Msa1361480-mRNA-1:exon:12445;Parent=Msa1361480-mRNA-1 |
| tig0017500 | exon | 16790 | 17000 | 16790 | ID=Msa1361480-mRNA-1:exon:12446;Parent=Msa1361480-mRNA-1 |
| tig0017500 | five_prime_UTR | 9574 | 9698 | 9574 | ID=Msa1361480-mRNA-1:five_prime_utr;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 9699 | 9989 | 9699 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 10075 | 10248 | 10075 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 10846 | 11254 | 10846 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 11687 | 11805 | 11687 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 11903 | 11989 | 11903 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 12602 | 12742 | 12602 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 13207 | 13251 | 13207 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 13387 | 13553 | 13387 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 13646 | 13784 | 13646 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 13872 | 13957 | 13872 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 14332 | 14461 | 14332 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 14888 | 15020 | 14888 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 15240 | 15385 | 15240 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 16462 | 16624 | 16462 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | CDS | 16790 | 16995 | 16790 | ID=Msa1361480-mRNA-1:cds;Parent=Msa1361480-mRNA-1 |
| tig0017500 | three_prime_UTR | 16996 | 17000 | 16996 | ID=Msa1361480-mRNA-1:three_prime_utr;Parent=Msa1361480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
