Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477570 | XP_013461938.1 | 99.812 | 532 | 1 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1070 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477570 | sp|Q9LV21|TCPD_ARATH | 87.873 | 536 | 61 | 1 | 1 | 532 | 1 | 536 | 0.0 | 964 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477570 | A0A072V3N8 | 99.812 | 532 | 1 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1070 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0433690 | Msa0477570 | 0.891141 | 5.205500e-74 | -8.615850e-47 |
| Msa0477570 | Msa0532160 | 0.814110 | 1.819940e-51 | -8.615850e-47 |
| Msa0477570 | Msa0701890 | 0.817840 | 2.676789e-52 | -8.615850e-47 |
| Msa0477570 | Msa1361480 | 0.801625 | 8.241521e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477570 | MtrunA17_Chr3g0139481 | 85.150 | 532 | 22 | 5 | 1 | 532 | 1 | 475 | 0.0 | 877 |
| Msa0477570 | MtrunA17_Chr8g0392171 | 77.524 | 307 | 32 | 6 | 194 | 495 | 1 | 275 | 1.53e-159 | 455 |
| Msa0477570 | MtrunA17_Chr3g0123341 | 37.500 | 512 | 307 | 7 | 24 | 530 | 28 | 531 | 1.27e-103 | 321 |
| Msa0477570 | MtrunA17_Chr7g0272821 | 34.816 | 517 | 318 | 7 | 20 | 530 | 14 | 517 | 2.44e-89 | 284 |
| Msa0477570 | MtrunA17_Chr7g0241881 | 35.029 | 511 | 313 | 7 | 26 | 530 | 20 | 517 | 1.40e-88 | 282 |
| Msa0477570 | MtrunA17_Chr8g0380331 | 34.476 | 525 | 316 | 9 | 24 | 529 | 19 | 534 | 8.06e-85 | 273 |
| Msa0477570 | MtrunA17_Chr5g0440381 | 32.877 | 511 | 323 | 8 | 28 | 529 | 27 | 526 | 2.02e-79 | 259 |
| Msa0477570 | MtrunA17_Chr2g0282161 | 30.528 | 511 | 344 | 7 | 25 | 530 | 20 | 524 | 5.89e-73 | 242 |
| Msa0477570 | MtrunA17_Chr6g0461541 | 28.571 | 511 | 351 | 5 | 23 | 529 | 20 | 520 | 5.84e-69 | 231 |
| Msa0477570 | MtrunA17_Chr1g0160221 | 27.626 | 514 | 358 | 5 | 23 | 532 | 23 | 526 | 1.16e-68 | 230 |
| Msa0477570 | MtrunA17_Chr7g0214841 | 27.519 | 516 | 347 | 10 | 29 | 529 | 22 | 525 | 8.05e-51 | 182 |
| Msa0477570 | MtrunA17_Chr4g0027801 | 47.706 | 109 | 6 | 1 | 296 | 404 | 14 | 71 | 1.07e-18 | 81.3 |
| Msa0477570 | MtrunA17_Chr8g0392161 | 77.500 | 40 | 9 | 0 | 124 | 163 | 32 | 71 | 7.25e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477570 | AT3G18190.1 | 87.873 | 536 | 61 | 1 | 1 | 532 | 1 | 536 | 0.0 | 964 |
| Msa0477570 | AT1G24510.1 | 38.447 | 515 | 304 | 7 | 21 | 530 | 25 | 531 | 2.19e-104 | 323 |
| Msa0477570 | AT1G24510.3 | 37.553 | 474 | 283 | 7 | 62 | 530 | 13 | 478 | 1.84e-89 | 283 |
| Msa0477570 | AT1G24510.2 | 36.933 | 463 | 279 | 7 | 73 | 530 | 1 | 455 | 9.47e-84 | 268 |
| Msa0477570 | AT3G20050.1 | 33.898 | 531 | 323 | 9 | 18 | 529 | 13 | 534 | 9.29e-83 | 268 |
| Msa0477570 | AT5G20890.1 | 33.656 | 517 | 324 | 7 | 20 | 530 | 14 | 517 | 6.94e-82 | 265 |
| Msa0477570 | AT3G11830.1 | 32.485 | 511 | 325 | 7 | 28 | 529 | 27 | 526 | 1.78e-76 | 251 |
| Msa0477570 | AT3G11830.2 | 32.485 | 511 | 323 | 8 | 28 | 529 | 27 | 524 | 1.05e-74 | 247 |
| Msa0477570 | AT3G03960.1 | 28.817 | 524 | 357 | 7 | 14 | 532 | 17 | 529 | 1.04e-71 | 239 |
| Msa0477570 | AT5G26360.1 | 31.311 | 511 | 340 | 7 | 25 | 530 | 20 | 524 | 2.62e-71 | 238 |
| Msa0477570 | AT5G16070.1 | 29.594 | 517 | 324 | 13 | 30 | 520 | 23 | 525 | 7.05e-53 | 188 |
| Msa0477570 | AT3G02530.1 | 28.794 | 514 | 333 | 11 | 30 | 520 | 23 | 526 | 3.35e-51 | 183 |
Find 119 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAAGATTGTGAAGATTTC+TGG | 0.204894 | 3_3:+81808654 | Msa0477570:CDS |
| TGTGAAGATTTCTGGTATTA+AGG | 0.209465 | 3_3:+81808662 | Msa0477570:CDS |
| TCTTGCTAAAGCTAAGATTT+TGG | 0.234466 | 3_3:+81808494 | Msa0477570:CDS |
| GATTTCTGGTATTAAGGATA+TGG | 0.239423 | 3_3:+81808668 | Msa0477570:CDS |
| ATCGTCTTTGCGTTTGTTAT+CGG | 0.257624 | 3_3:-81807614 | None:intergenic |
| AGGGATGATTAAGAAGATTA+AGG | 0.275419 | 3_3:+81808398 | Msa0477570:CDS |
| GCATTCTCAGCAAGGGTATA+TGG | 0.307049 | 3_3:-81808927 | None:intergenic |
| CTCTGTTCTATATCCGTCTT+AGG | 0.334855 | 3_3:-81808312 | None:intergenic |
| CTTGTGGAAGAGCTTTCTCT+TGG | 0.336541 | 3_3:+81808627 | Msa0477570:CDS |
| TCACGGAGATCCACCATTTC+CGG | 0.339036 | 3_3:-81808138 | None:intergenic |
| AGCAGCGGAGTCTTGAGATT+TGG | 0.347607 | 3_3:-81807824 | None:intergenic |
| TGTCAAGGCAATTGGGTGCT+TGG | 0.354279 | 3_3:+81808838 | Msa0477570:CDS |
| ATCGGTGTAGGATTCGGTTT+TGG | 0.362816 | 3_3:-81807596 | None:intergenic |
| TCTCACCGCCATGGCTGTTC+CGG | 0.362983 | 3_3:+81807981 | Msa0477570:CDS |
| GATAGAGCTGTCAAGGCAAT+TGG | 0.370145 | 3_3:+81808830 | Msa0477570:CDS |
| TTGTGGAAGAGCTTTCTCTT+GGG | 0.371995 | 3_3:+81808628 | Msa0477570:CDS |
| ATGATGCTTTGTGTGTTGTT+AGG | 0.372583 | 3_3:+81808760 | Msa0477570:CDS |
| TTTGTTATCGGTGTAGGATT+CGG | 0.375261 | 3_3:-81807602 | None:intergenic |
| CATACCTTTGGGGCCGAGAC+TGG | 0.392090 | 3_3:-81807689 | None:intergenic |
| AATCTTAGCATTCTCCATTC+TGG | 0.394765 | 3_3:-81808262 | None:intergenic |
| GGAGGATCGGTGAGGGGCTG+CGG | 0.401126 | 3_3:-81807575 | None:intergenic |
| GTCAAGGCAATTGGGTGCTT+GGG | 0.415529 | 3_3:+81808839 | Msa0477570:CDS |
| CGATCCCGCTAGGCCGGAAA+TGG | 0.417675 | 3_3:+81808125 | Msa0477570:CDS |
| AGAACTGAATCAACAGCAAT+AGG | 0.421556 | 3_3:-81808093 | None:intergenic |
| AGCTCAGTAACAATTGCAAT+CGG | 0.423035 | 3_3:-81808960 | None:intergenic |
| TTTGTGTGTTGTTAGGTGTT+TGG | 0.427682 | 3_3:+81808767 | Msa0477570:CDS |
| AAATGCTCAATATTAGCAAT+AGG | 0.434996 | 3_3:-81808576 | None:intergenic |
| ATTTCTGGTATTAAGGATAT+GGG | 0.441434 | 3_3:+81808669 | Msa0477570:CDS |
| TTTGCGTTTGTTATCGGTGT+AGG | 0.444094 | 3_3:-81807608 | None:intergenic |
| TAGCACTTCGTTGAATAGTA+AGG | 0.456781 | 3_3:+81808041 | Msa0477570:CDS |
| TCACGATCAGTGAGTTCAAC+CGG | 0.461390 | 3_3:-81808000 | None:intergenic |
| AACGCCGTTCGCACCAGTCT+CGG | 0.462746 | 3_3:+81807676 | Msa0477570:CDS |
| ACCACAACTGTGCTTGTTCG+TGG | 0.463002 | 3_3:+81808696 | Msa0477570:CDS |
| TACTGAGCTTGTGAAGGGCT+TGG | 0.463815 | 3_3:+81808200 | Msa0477570:CDS |
| GTGATTATTCTCAGATGGAT+AGG | 0.464278 | 3_3:+81808346 | Msa0477570:CDS |
| CAAGACTCCGCTGCTGGTGA+TGG | 0.468281 | 3_3:+81807832 | Msa0477570:CDS |
| ATTAAGAAGATTAAGGCAAC+CGG | 0.476085 | 3_3:+81808405 | Msa0477570:CDS |
| GAATGTGGTGCAGCCATTGC+TGG | 0.481414 | 3_3:+81809061 | Msa0477570:CDS |
| GAAGAGCTTTCTCTTGGGGA+TGG | 0.486289 | 3_3:+81808633 | Msa0477570:CDS |
| TCCACCATTTCCGGCCTAGC+GGG | 0.488011 | 3_3:-81808129 | None:intergenic |
| GCAATTGGGTGCTTGGGCTA+AGG | 0.488468 | 3_3:+81808845 | Msa0477570:CDS |
| AGGCAAACAATTAAGAGTCT+TGG | 0.489277 | 3_3:-81808556 | None:intergenic |
| TGTCTCCTCCTTCTCTCTCA+TGG | 0.491398 | 3_3:+81807898 | Msa0477570:CDS |
| TGTGGAAGAGCTTTCTCTTG+GGG | 0.491536 | 3_3:+81808629 | Msa0477570:CDS |
| TATACCCTTGCTGAGAATGC+AGG | 0.493053 | 3_3:+81808930 | Msa0477570:CDS |
| CAGTCTCGGCCCCAAAGGTA+TGG | 0.493521 | 3_3:+81807690 | Msa0477570:CDS |
| AATCAACAACACATTACAAC+CGG | 0.494792 | 3_3:-81808424 | None:intergenic |
| CTGAGGAATCGTCATGCTAA+AGG | 0.500255 | 3_3:+81808981 | Msa0477570:CDS |
| AACGGCGTTAGCGACGGAAC+GGG | 0.500736 | 3_3:-81807662 | None:intergenic |
| TGTCATCGATCCCGCTAGGC+CGG | 0.501041 | 3_3:+81808119 | Msa0477570:CDS |
| TCAACACTGGAATCAATGTC+AGG | 0.507995 | 3_3:+81809009 | Msa0477570:CDS |
| AAATCTCAAGACTCCGCTGC+TGG | 0.512750 | 3_3:+81807826 | Msa0477570:CDS |
| ATAGAGCTGTCAAGGCAATT+GGG | 0.513984 | 3_3:+81808831 | Msa0477570:CDS |
| GATTGCAGGTGGTGGTGCTC+CGG | 0.514051 | 3_3:+81808806 | Msa0477570:CDS |
| TGCCTTGACAGCTCTATCTC+CGG | 0.516484 | 3_3:-81808825 | None:intergenic |
| GTTGGTGATGATAACTTCGT+TGG | 0.525584 | 3_3:-81807734 | None:intergenic |
| GGAACGGGCGGCGATGATGT+TGG | 0.529719 | 3_3:-81807647 | None:intergenic |
| TCCCGCTAGGCCGGAAATGG+TGG | 0.531201 | 3_3:+81808128 | Msa0477570:CDS |
| AAGAGCTTTCTCTTGGGGAT+GGG | 0.531234 | 3_3:+81808634 | Msa0477570:CDS |
| AACTTGCATCTTGTTGAGGA+TGG | 0.540091 | 3_3:-81807767 | None:intergenic |
| GGTTAGTGATTATTCTCAGA+TGG | 0.543811 | 3_3:+81808341 | Msa0477570:CDS |
| TCAGATTTCACCTCCTAAGA+CGG | 0.551329 | 3_3:+81808299 | Msa0477570:CDS |
| ACATTTCTCGAGAAGTGCTC+CGG | 0.552049 | 3_3:-81807878 | None:intergenic |
| CTGTATTCGTGCATTTGCTG+AGG | 0.558420 | 3_3:+81808890 | Msa0477570:CDS |
| CGGCGATGATGTTGGATTGA+CGG | 0.559941 | 3_3:-81807639 | None:intergenic |
| GATGATAACTTCGTTGGAAG+AGG | 0.560445 | 3_3:-81807728 | None:intergenic |
| GAATACCATGAGAGAGAAGG+AGG | 0.561831 | 3_3:-81807903 | None:intergenic |
| CTCCGGAGATAGAGCTGTCA+AGG | 0.563162 | 3_3:+81808823 | Msa0477570:CDS |
| GAACGGCGTTAGCGACGGAA+CGG | 0.564350 | 3_3:-81807663 | None:intergenic |
| GGGGCCGAGACTGGTGCGAA+CGG | 0.565754 | 3_3:-81807680 | None:intergenic |
| AAGGTTAGTCATGCTGCTGG+TGG | 0.570337 | 3_3:+81808234 | Msa0477570:CDS |
| GGCGATGACAACAACGGTGG+TGG | 0.571260 | 3_3:-81807857 | None:intergenic |
| CGCACCAGTCTCGGCCCCAA+AGG | 0.572245 | 3_3:+81807685 | Msa0477570:CDS |
| CCTCACACACTCTGTTGCCA+AGG | 0.573445 | 3_3:-81809102 | None:intergenic |
| GCTCAGTAACAATTGCAATC+GGG | 0.575791 | 3_3:-81808959 | None:intergenic |
| TCTCTGTCATCGATCCCGCT+AGG | 0.576821 | 3_3:+81808115 | Msa0477570:CDS |
| ACCACCGTTGTTGTCATCGC+CGG | 0.577312 | 3_3:+81807859 | Msa0477570:CDS |
| GAAGAACTTGCATCTTGTTG+AGG | 0.580248 | 3_3:-81807771 | None:intergenic |
| GGCGTTAGCGACGGAACGGG+CGG | 0.589560 | 3_3:-81807659 | None:intergenic |
| GTTGGGTTATGCTGATCTTG+TGG | 0.590393 | 3_3:+81808611 | Msa0477570:CDS |
| GGTGGTTCCATCACCAGCAG+CGG | 0.591723 | 3_3:-81807839 | None:intergenic |
| GCACTTGTGCTAACCAGCAA+TGG | 0.592202 | 3_3:-81809074 | None:intergenic |
| TCAAACCTGCATTCTCAGCA+AGG | 0.593910 | 3_3:-81808935 | None:intergenic |
| GAGTTCAACCGGAACAGCCA+TGG | 0.594130 | 3_3:-81807989 | None:intergenic |
| GGTGCGAACGGCGTTAGCGA+CGG | 0.594895 | 3_3:-81807668 | None:intergenic |
| TGATGATACTGAGCTTGTGA+AGG | 0.595971 | 3_3:+81808194 | Msa0477570:CDS |
| TTAGCATTCTCCATTCTGGT+AGG | 0.596904 | 3_3:-81808258 | None:intergenic |
| ACACTCTGTTGCCAAGGTGA+TGG | 0.598855 | 3_3:-81809096 | None:intergenic |
| TGCTGGTGGACCTACCAGAA+TGG | 0.600235 | 3_3:+81808248 | Msa0477570:CDS |
| GCTAAAGGTGAGATCAACAC+TGG | 0.604820 | 3_3:+81808996 | Msa0477570:CDS |
| GAGGATGGTAGCGCCGTCGT+TGG | 0.607730 | 3_3:-81807752 | None:intergenic |
| GATGATACTGAGCTTGTGAA+GGG | 0.610892 | 3_3:+81808195 | Msa0477570:CDS |
| TGTTCTATATCCGTCTTAGG+AGG | 0.611514 | 3_3:-81808309 | None:intergenic |
| TTGCAATTGTTACTGAGCTG+AGG | 0.612866 | 3_3:+81808964 | Msa0477570:CDS |
| TCCACGAACAAGCACAGTTG+TGG | 0.612984 | 3_3:-81808697 | None:intergenic |
| GCTGCACCACATTCTCCTCA+AGG | 0.613760 | 3_3:-81809052 | None:intergenic |
| TAGCACAAGTGCCATCACCT+TGG | 0.618089 | 3_3:+81809085 | Msa0477570:CDS |
| TCAAATTACAAACATCCTTG+AGG | 0.621720 | 3_3:+81809037 | Msa0477570:CDS |
| AAGAAGGTTAGTCATGCTGC+TGG | 0.624743 | 3_3:+81808231 | Msa0477570:CDS |
| ACTGGAATCAATGTCAGGAA+AGG | 0.625427 | 3_3:+81809014 | Msa0477570:CDS |
| AAACATCCTTGAGGAGAATG+TGG | 0.628033 | 3_3:+81809046 | Msa0477570:CDS |
| TCTTAACAATCTTCACATCA+CGG | 0.628490 | 3_3:-81808155 | None:intergenic |
| TGTTGATGTTCTCACCGCCA+TGG | 0.628840 | 3_3:+81807972 | Msa0477570:CDS |
| AACATCAACAGCTTTAACAG+AGG | 0.629483 | 3_3:-81807959 | None:intergenic |
| GTGAAGATTGTTAAGAAGCT+CGG | 0.630785 | 3_3:+81808162 | Msa0477570:CDS |
| TTAGGTGTTTGGTTGCCAAG+AGG | 0.631658 | 3_3:+81808778 | Msa0477570:CDS |
| GATGAATACCATGAGAGAGA+AGG | 0.639596 | 3_3:-81807906 | None:intergenic |
| AGTGAATCAGAGATAACAGT+GGG | 0.642258 | 3_3:-81807928 | None:intergenic |
| ATCCACCATTTCCGGCCTAG+CGG | 0.644279 | 3_3:-81808130 | None:intergenic |
| CCTTGGCAACAGAGTGTGTG+AGG | 0.652881 | 3_3:+81809102 | Msa0477570:CDS |
| CAAACCTGCATTCTCAGCAA+GGG | 0.653006 | 3_3:-81808934 | None:intergenic |
| GGATATAGAACAGAGTATTG+TGG | 0.674097 | 3_3:+81808320 | Msa0477570:CDS |
| GAAGTTATCATCACCAACGA+CGG | 0.680075 | 3_3:+81807739 | Msa0477570:CDS |
| TTCAACCGGAACAGCCATGG+CGG | 0.690129 | 3_3:-81807986 | None:intergenic |
| AAGATTGTTAAGAAGCTCGG+TGG | 0.695277 | 3_3:+81808165 | Msa0477570:CDS |
| TGCTCCGGCGATGACAACAA+CGG | 0.714797 | 3_3:-81807863 | None:intergenic |
| TCCGGCGATGACAACAACGG+TGG | 0.732056 | 3_3:-81807860 | None:intergenic |
| AAGTGAATCAGAGATAACAG+TGG | 0.734763 | 3_3:-81807929 | None:intergenic |
| TTGATGATATTGTAACTGTG+AGG | 0.759737 | 3_3:+81809138 | Msa0477570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAATGCTCAATATTAGCAAT+AGG | - | chr3_3:81808579-81808598 | None:intergenic | 25.0% |
| !!! | ATTTCTGGTATTAAGGATAT+GGG | + | chr3_3:81808669-81808688 | Msa0477570:CDS | 25.0% |
| ! | AAATGCTCAATATTAGCAAT+AGG | - | chr3_3:81808579-81808598 | None:intergenic | 25.0% |
| !!! | ATTTCTGGTATTAAGGATAT+GGG | + | chr3_3:81808669-81808688 | Msa0477570:CDS | 25.0% |
| ! | ATCATTTTGTCCATACCTTT+GGG | - | chr3_3:81807703-81807722 | None:intergenic | 30.0% |
| TCTTAACAATCTTCACATCA+CGG | - | chr3_3:81808158-81808177 | None:intergenic | 30.0% | |
| ! | AAGAGAGGAGTTACATTTTA+GGG | + | chr3_3:81808379-81808398 | Msa0477570:CDS | 30.0% |
| AGGGATGATTAAGAAGATTA+AGG | + | chr3_3:81808398-81808417 | Msa0477570:CDS | 30.0% | |
| ATTAAGAAGATTAAGGCAAC+CGG | + | chr3_3:81808405-81808424 | Msa0477570:CDS | 30.0% | |
| AATCAACAACACATTACAAC+CGG | - | chr3_3:81808427-81808446 | None:intergenic | 30.0% | |
| ! | TCTTGCTAAAGCTAAGATTT+TGG | + | chr3_3:81808494-81808513 | Msa0477570:CDS | 30.0% |
| !! | TGTGAAGATTTCTGGTATTA+AGG | + | chr3_3:81808662-81808681 | Msa0477570:CDS | 30.0% |
| !! | GATTTCTGGTATTAAGGATA+TGG | + | chr3_3:81808668-81808687 | Msa0477570:CDS | 30.0% |
| TCAAATTACAAACATCCTTG+AGG | + | chr3_3:81809037-81809056 | Msa0477570:CDS | 30.0% | |
| ! | TTGATGATATTGTAACTGTG+AGG | + | chr3_3:81809138-81809157 | Msa0477570:CDS | 30.0% |
| ! | ATCATTTTGTCCATACCTTT+GGG | - | chr3_3:81807703-81807722 | None:intergenic | 30.0% |
| TCTTAACAATCTTCACATCA+CGG | - | chr3_3:81808158-81808177 | None:intergenic | 30.0% | |
| ! | AAGAGAGGAGTTACATTTTA+GGG | + | chr3_3:81808379-81808398 | Msa0477570:CDS | 30.0% |
| AGGGATGATTAAGAAGATTA+AGG | + | chr3_3:81808398-81808417 | Msa0477570:CDS | 30.0% | |
| ATTAAGAAGATTAAGGCAAC+CGG | + | chr3_3:81808405-81808424 | Msa0477570:CDS | 30.0% | |
| AATCAACAACACATTACAAC+CGG | - | chr3_3:81808427-81808446 | None:intergenic | 30.0% | |
| ! | TCTTGCTAAAGCTAAGATTT+TGG | + | chr3_3:81808494-81808513 | Msa0477570:CDS | 30.0% |
| !! | TGTGAAGATTTCTGGTATTA+AGG | + | chr3_3:81808662-81808681 | Msa0477570:CDS | 30.0% |
| !! | GATTTCTGGTATTAAGGATA+TGG | + | chr3_3:81808668-81808687 | Msa0477570:CDS | 30.0% |
| TCAAATTACAAACATCCTTG+AGG | + | chr3_3:81809037-81809056 | Msa0477570:CDS | 30.0% | |
| ! | TTGATGATATTGTAACTGTG+AGG | + | chr3_3:81809138-81809157 | Msa0477570:CDS | 30.0% |
| ! | TTTGTTATCGGTGTAGGATT+CGG | - | chr3_3:81807605-81807624 | None:intergenic | 35.0% |
| !! | ATCGTCTTTGCGTTTGTTAT+CGG | - | chr3_3:81807617-81807636 | None:intergenic | 35.0% |
| ! | TCATTTTGTCCATACCTTTG+GGG | - | chr3_3:81807702-81807721 | None:intergenic | 35.0% |
| ! | GATCATTTTGTCCATACCTT+TGG | - | chr3_3:81807704-81807723 | None:intergenic | 35.0% |
| AGTGAATCAGAGATAACAGT+GGG | - | chr3_3:81807931-81807950 | None:intergenic | 35.0% | |
| AAGTGAATCAGAGATAACAG+TGG | - | chr3_3:81807932-81807951 | None:intergenic | 35.0% | |
| ! | AACATCAACAGCTTTAACAG+AGG | - | chr3_3:81807962-81807981 | None:intergenic | 35.0% |
| TAGCACTTCGTTGAATAGTA+AGG | + | chr3_3:81808041-81808060 | Msa0477570:CDS | 35.0% | |
| AGAACTGAATCAACAGCAAT+AGG | - | chr3_3:81808096-81808115 | None:intergenic | 35.0% | |
| GTGAAGATTGTTAAGAAGCT+CGG | + | chr3_3:81808162-81808181 | Msa0477570:CDS | 35.0% | |
| AATCTTAGCATTCTCCATTC+TGG | - | chr3_3:81808265-81808284 | None:intergenic | 35.0% | |
| !! | GGATATAGAACAGAGTATTG+TGG | + | chr3_3:81808320-81808339 | Msa0477570:CDS | 35.0% |
| GGTTAGTGATTATTCTCAGA+TGG | + | chr3_3:81808341-81808360 | Msa0477570:CDS | 35.0% | |
| GTGATTATTCTCAGATGGAT+AGG | + | chr3_3:81808346-81808365 | Msa0477570:CDS | 35.0% | |
| ! | TCAGATGGATAGGATTTTGA+AGG | + | chr3_3:81808356-81808375 | Msa0477570:CDS | 35.0% |
| !! | ATAGGATTTTGAAGGAAGAG+AGG | + | chr3_3:81808364-81808383 | Msa0477570:CDS | 35.0% |
| ! | GAAGAGAGGAGTTACATTTT+AGG | + | chr3_3:81808378-81808397 | Msa0477570:CDS | 35.0% |
| AGGCAAACAATTAAGAGTCT+TGG | - | chr3_3:81808559-81808578 | None:intergenic | 35.0% | |
| ! | ATGATGCTTTGTGTGTTGTT+AGG | + | chr3_3:81808760-81808779 | Msa0477570:CDS | 35.0% |
| ! | TTTGTGTGTTGTTAGGTGTT+TGG | + | chr3_3:81808767-81808786 | Msa0477570:CDS | 35.0% |
| AGCTCAGTAACAATTGCAAT+CGG | - | chr3_3:81808963-81808982 | None:intergenic | 35.0% | |
| ! | TTTGTTATCGGTGTAGGATT+CGG | - | chr3_3:81807605-81807624 | None:intergenic | 35.0% |
| !! | ATCGTCTTTGCGTTTGTTAT+CGG | - | chr3_3:81807617-81807636 | None:intergenic | 35.0% |
| ! | TCATTTTGTCCATACCTTTG+GGG | - | chr3_3:81807702-81807721 | None:intergenic | 35.0% |
| ! | GATCATTTTGTCCATACCTT+TGG | - | chr3_3:81807704-81807723 | None:intergenic | 35.0% |
| AGTGAATCAGAGATAACAGT+GGG | - | chr3_3:81807931-81807950 | None:intergenic | 35.0% | |
| AAGTGAATCAGAGATAACAG+TGG | - | chr3_3:81807932-81807951 | None:intergenic | 35.0% | |
| ! | AACATCAACAGCTTTAACAG+AGG | - | chr3_3:81807962-81807981 | None:intergenic | 35.0% |
| TAGCACTTCGTTGAATAGTA+AGG | + | chr3_3:81808041-81808060 | Msa0477570:CDS | 35.0% | |
| AGAACTGAATCAACAGCAAT+AGG | - | chr3_3:81808096-81808115 | None:intergenic | 35.0% | |
| GTGAAGATTGTTAAGAAGCT+CGG | + | chr3_3:81808162-81808181 | Msa0477570:CDS | 35.0% | |
| AATCTTAGCATTCTCCATTC+TGG | - | chr3_3:81808265-81808284 | None:intergenic | 35.0% | |
| !! | GGATATAGAACAGAGTATTG+TGG | + | chr3_3:81808320-81808339 | Msa0477570:CDS | 35.0% |
| GGTTAGTGATTATTCTCAGA+TGG | + | chr3_3:81808341-81808360 | Msa0477570:CDS | 35.0% | |
| GTGATTATTCTCAGATGGAT+AGG | + | chr3_3:81808346-81808365 | Msa0477570:CDS | 35.0% | |
| ! | TCAGATGGATAGGATTTTGA+AGG | + | chr3_3:81808356-81808375 | Msa0477570:CDS | 35.0% |
| !! | ATAGGATTTTGAAGGAAGAG+AGG | + | chr3_3:81808364-81808383 | Msa0477570:CDS | 35.0% |
| ! | GAAGAGAGGAGTTACATTTT+AGG | + | chr3_3:81808378-81808397 | Msa0477570:CDS | 35.0% |
| AGGCAAACAATTAAGAGTCT+TGG | - | chr3_3:81808559-81808578 | None:intergenic | 35.0% | |
| ! | ATGATGCTTTGTGTGTTGTT+AGG | + | chr3_3:81808760-81808779 | Msa0477570:CDS | 35.0% |
| ! | TTTGTGTGTTGTTAGGTGTT+TGG | + | chr3_3:81808767-81808786 | Msa0477570:CDS | 35.0% |
| AGCTCAGTAACAATTGCAAT+CGG | - | chr3_3:81808963-81808982 | None:intergenic | 35.0% | |
| !! | TTTGCGTTTGTTATCGGTGT+AGG | - | chr3_3:81807611-81807630 | None:intergenic | 40.0% |
| GATGATAACTTCGTTGGAAG+AGG | - | chr3_3:81807731-81807750 | None:intergenic | 40.0% | |
| !! | GTTGGTGATGATAACTTCGT+TGG | - | chr3_3:81807737-81807756 | None:intergenic | 40.0% |
| GAAGTTATCATCACCAACGA+CGG | + | chr3_3:81807739-81807758 | Msa0477570:CDS | 40.0% | |
| AACTTGCATCTTGTTGAGGA+TGG | - | chr3_3:81807770-81807789 | None:intergenic | 40.0% | |
| GAAGAACTTGCATCTTGTTG+AGG | - | chr3_3:81807774-81807793 | None:intergenic | 40.0% | |
| ! | GAGTTCAACGAGCATTTTAG+CGG | - | chr3_3:81807803-81807822 | None:intergenic | 40.0% |
| GATGAATACCATGAGAGAGA+AGG | - | chr3_3:81807909-81807928 | None:intergenic | 40.0% | |
| AAGATTGTTAAGAAGCTCGG+TGG | + | chr3_3:81808165-81808184 | Msa0477570:CDS | 40.0% | |
| TGATGATACTGAGCTTGTGA+AGG | + | chr3_3:81808194-81808213 | Msa0477570:CDS | 40.0% | |
| GATGATACTGAGCTTGTGAA+GGG | + | chr3_3:81808195-81808214 | Msa0477570:CDS | 40.0% | |
| !! | GGGCTTGGTTTTTGATAAGA+AGG | + | chr3_3:81808215-81808234 | Msa0477570:CDS | 40.0% |
| TTAGCATTCTCCATTCTGGT+AGG | - | chr3_3:81808261-81808280 | None:intergenic | 40.0% | |
| TCAGATTTCACCTCCTAAGA+CGG | + | chr3_3:81808299-81808318 | Msa0477570:CDS | 40.0% | |
| TGTTCTATATCCGTCTTAGG+AGG | - | chr3_3:81808312-81808331 | None:intergenic | 40.0% | |
| CTCTGTTCTATATCCGTCTT+AGG | - | chr3_3:81808315-81808334 | None:intergenic | 40.0% | |
| ! | CATTTTCGTGCTGAGAAGTT+GGG | + | chr3_3:81808594-81808613 | Msa0477570:CDS | 40.0% |
| TTGTGGAAGAGCTTTCTCTT+GGG | + | chr3_3:81808628-81808647 | Msa0477570:CDS | 40.0% | |
| GGGAAGATTGTGAAGATTTC+TGG | + | chr3_3:81808654-81808673 | Msa0477570:CDS | 40.0% | |
| ACCTGCAATCAAAAACCTCT+TGG | - | chr3_3:81808796-81808815 | None:intergenic | 40.0% | |
| !! | AAGAGGTTTTTGATTGCAGG+TGG | + | chr3_3:81808795-81808814 | Msa0477570:CDS | 40.0% |
| ATAGAGCTGTCAAGGCAATT+GGG | + | chr3_3:81808831-81808850 | Msa0477570:CDS | 40.0% | |
| GCTCAGTAACAATTGCAATC+GGG | - | chr3_3:81808962-81808981 | None:intergenic | 40.0% | |
| TTGCAATTGTTACTGAGCTG+AGG | + | chr3_3:81808964-81808983 | Msa0477570:CDS | 40.0% | |
| TCAACACTGGAATCAATGTC+AGG | + | chr3_3:81809009-81809028 | Msa0477570:CDS | 40.0% | |
| ACTGGAATCAATGTCAGGAA+AGG | + | chr3_3:81809014-81809033 | Msa0477570:CDS | 40.0% | |
| AAACATCCTTGAGGAGAATG+TGG | + | chr3_3:81809046-81809065 | Msa0477570:CDS | 40.0% | |
| !! | TTTGCGTTTGTTATCGGTGT+AGG | - | chr3_3:81807611-81807630 | None:intergenic | 40.0% |
| GATGATAACTTCGTTGGAAG+AGG | - | chr3_3:81807731-81807750 | None:intergenic | 40.0% | |
| !! | GTTGGTGATGATAACTTCGT+TGG | - | chr3_3:81807737-81807756 | None:intergenic | 40.0% |
| GAAGTTATCATCACCAACGA+CGG | + | chr3_3:81807739-81807758 | Msa0477570:CDS | 40.0% | |
| AACTTGCATCTTGTTGAGGA+TGG | - | chr3_3:81807770-81807789 | None:intergenic | 40.0% | |
| GAAGAACTTGCATCTTGTTG+AGG | - | chr3_3:81807774-81807793 | None:intergenic | 40.0% | |
| ! | GAGTTCAACGAGCATTTTAG+CGG | - | chr3_3:81807803-81807822 | None:intergenic | 40.0% |
| GATGAATACCATGAGAGAGA+AGG | - | chr3_3:81807909-81807928 | None:intergenic | 40.0% | |
| AAGATTGTTAAGAAGCTCGG+TGG | + | chr3_3:81808165-81808184 | Msa0477570:CDS | 40.0% | |
| TGATGATACTGAGCTTGTGA+AGG | + | chr3_3:81808194-81808213 | Msa0477570:CDS | 40.0% | |
| GATGATACTGAGCTTGTGAA+GGG | + | chr3_3:81808195-81808214 | Msa0477570:CDS | 40.0% | |
| !! | GGGCTTGGTTTTTGATAAGA+AGG | + | chr3_3:81808215-81808234 | Msa0477570:CDS | 40.0% |
| TTAGCATTCTCCATTCTGGT+AGG | - | chr3_3:81808261-81808280 | None:intergenic | 40.0% | |
| TCAGATTTCACCTCCTAAGA+CGG | + | chr3_3:81808299-81808318 | Msa0477570:CDS | 40.0% | |
| TGTTCTATATCCGTCTTAGG+AGG | - | chr3_3:81808312-81808331 | None:intergenic | 40.0% | |
| CTCTGTTCTATATCCGTCTT+AGG | - | chr3_3:81808315-81808334 | None:intergenic | 40.0% | |
| ! | CATTTTCGTGCTGAGAAGTT+GGG | + | chr3_3:81808594-81808613 | Msa0477570:CDS | 40.0% |
| TTGTGGAAGAGCTTTCTCTT+GGG | + | chr3_3:81808628-81808647 | Msa0477570:CDS | 40.0% | |
| GGGAAGATTGTGAAGATTTC+TGG | + | chr3_3:81808654-81808673 | Msa0477570:CDS | 40.0% | |
| ACCTGCAATCAAAAACCTCT+TGG | - | chr3_3:81808796-81808815 | None:intergenic | 40.0% | |
| !! | AAGAGGTTTTTGATTGCAGG+TGG | + | chr3_3:81808795-81808814 | Msa0477570:CDS | 40.0% |
| ATAGAGCTGTCAAGGCAATT+GGG | + | chr3_3:81808831-81808850 | Msa0477570:CDS | 40.0% | |
| GCTCAGTAACAATTGCAATC+GGG | - | chr3_3:81808962-81808981 | None:intergenic | 40.0% | |
| TTGCAATTGTTACTGAGCTG+AGG | + | chr3_3:81808964-81808983 | Msa0477570:CDS | 40.0% | |
| TCAACACTGGAATCAATGTC+AGG | + | chr3_3:81809009-81809028 | Msa0477570:CDS | 40.0% | |
| ACTGGAATCAATGTCAGGAA+AGG | + | chr3_3:81809014-81809033 | Msa0477570:CDS | 40.0% | |
| AAACATCCTTGAGGAGAATG+TGG | + | chr3_3:81809046-81809065 | Msa0477570:CDS | 40.0% | |
| !!! | AGGATTCGGTTTTGGAGGAT+CGG | - | chr3_3:81807591-81807610 | None:intergenic | 45.0% |
| !! | ATCGGTGTAGGATTCGGTTT+TGG | - | chr3_3:81807599-81807618 | None:intergenic | 45.0% |
| !! | TTCAACGAGCATTTTAGCGG+CGG | - | chr3_3:81807800-81807819 | None:intergenic | 45.0% |
| !! | ACATTTCTCGAGAAGTGCTC+CGG | - | chr3_3:81807881-81807900 | None:intergenic | 45.0% |
| GAATACCATGAGAGAGAAGG+AGG | - | chr3_3:81807906-81807925 | None:intergenic | 45.0% | |
| TCACGATCAGTGAGTTCAAC+CGG | - | chr3_3:81808003-81808022 | None:intergenic | 45.0% | |
| ! | AAGAAGGTTAGTCATGCTGC+TGG | + | chr3_3:81808231-81808250 | Msa0477570:CDS | 45.0% |
| ! | GCATTTTCGTGCTGAGAAGT+TGG | + | chr3_3:81808593-81808612 | Msa0477570:CDS | 45.0% |
| GTTGGGTTATGCTGATCTTG+TGG | + | chr3_3:81808611-81808630 | Msa0477570:CDS | 45.0% | |
| CTTGTGGAAGAGCTTTCTCT+TGG | + | chr3_3:81808627-81808646 | Msa0477570:CDS | 45.0% | |
| TGTGGAAGAGCTTTCTCTTG+GGG | + | chr3_3:81808629-81808648 | Msa0477570:CDS | 45.0% | |
| AAGAGCTTTCTCTTGGGGAT+GGG | + | chr3_3:81808634-81808653 | Msa0477570:CDS | 45.0% | |
| TTAGGTGTTTGGTTGCCAAG+AGG | + | chr3_3:81808778-81808797 | Msa0477570:CDS | 45.0% | |
| !! | GCCAAGAGGTTTTTGATTGC+AGG | + | chr3_3:81808792-81808811 | Msa0477570:CDS | 45.0% |
| !! | AGGTTTTTGATTGCAGGTGG+TGG | + | chr3_3:81808798-81808817 | Msa0477570:CDS | 45.0% |
| GATAGAGCTGTCAAGGCAAT+TGG | + | chr3_3:81808830-81808849 | Msa0477570:CDS | 45.0% | |
| ! | CTTGGGCTAAGGTTTTGCAT+GGG | + | chr3_3:81808856-81808875 | Msa0477570:CDS | 45.0% |
| ! | TAAGGTTTTGCATGGGATGG+AGG | + | chr3_3:81808863-81808882 | Msa0477570:CDS | 45.0% |
| ! | AAGGTTTTGCATGGGATGGA+GGG | + | chr3_3:81808864-81808883 | Msa0477570:CDS | 45.0% |
| ! | CTGTATTCGTGCATTTGCTG+AGG | + | chr3_3:81808890-81808909 | Msa0477570:CDS | 45.0% |
| ! | GCATTCTCAGCAAGGGTATA+TGG | - | chr3_3:81808930-81808949 | None:intergenic | 45.0% |
| TATACCCTTGCTGAGAATGC+AGG | + | chr3_3:81808930-81808949 | Msa0477570:CDS | 45.0% | |
| CAAACCTGCATTCTCAGCAA+GGG | - | chr3_3:81808937-81808956 | None:intergenic | 45.0% | |
| TCAAACCTGCATTCTCAGCA+AGG | - | chr3_3:81808938-81808957 | None:intergenic | 45.0% | |
| CTGAGGAATCGTCATGCTAA+AGG | + | chr3_3:81808981-81809000 | Msa0477570:CDS | 45.0% | |
| GCTAAAGGTGAGATCAACAC+TGG | + | chr3_3:81808996-81809015 | Msa0477570:CDS | 45.0% | |
| !!! | AGGATTCGGTTTTGGAGGAT+CGG | - | chr3_3:81807591-81807610 | None:intergenic | 45.0% |
| !! | ATCGGTGTAGGATTCGGTTT+TGG | - | chr3_3:81807599-81807618 | None:intergenic | 45.0% |
| !! | TTCAACGAGCATTTTAGCGG+CGG | - | chr3_3:81807800-81807819 | None:intergenic | 45.0% |
| !! | ACATTTCTCGAGAAGTGCTC+CGG | - | chr3_3:81807881-81807900 | None:intergenic | 45.0% |
| GAATACCATGAGAGAGAAGG+AGG | - | chr3_3:81807906-81807925 | None:intergenic | 45.0% | |
| TCACGATCAGTGAGTTCAAC+CGG | - | chr3_3:81808003-81808022 | None:intergenic | 45.0% | |
| ! | AAGAAGGTTAGTCATGCTGC+TGG | + | chr3_3:81808231-81808250 | Msa0477570:CDS | 45.0% |
| ! | GCATTTTCGTGCTGAGAAGT+TGG | + | chr3_3:81808593-81808612 | Msa0477570:CDS | 45.0% |
| GTTGGGTTATGCTGATCTTG+TGG | + | chr3_3:81808611-81808630 | Msa0477570:CDS | 45.0% | |
| CTTGTGGAAGAGCTTTCTCT+TGG | + | chr3_3:81808627-81808646 | Msa0477570:CDS | 45.0% | |
| TGTGGAAGAGCTTTCTCTTG+GGG | + | chr3_3:81808629-81808648 | Msa0477570:CDS | 45.0% | |
| AAGAGCTTTCTCTTGGGGAT+GGG | + | chr3_3:81808634-81808653 | Msa0477570:CDS | 45.0% | |
| TTAGGTGTTTGGTTGCCAAG+AGG | + | chr3_3:81808778-81808797 | Msa0477570:CDS | 45.0% | |
| !! | GCCAAGAGGTTTTTGATTGC+AGG | + | chr3_3:81808792-81808811 | Msa0477570:CDS | 45.0% |
| !! | AGGTTTTTGATTGCAGGTGG+TGG | + | chr3_3:81808798-81808817 | Msa0477570:CDS | 45.0% |
| GATAGAGCTGTCAAGGCAAT+TGG | + | chr3_3:81808830-81808849 | Msa0477570:CDS | 45.0% | |
| ! | CTTGGGCTAAGGTTTTGCAT+GGG | + | chr3_3:81808856-81808875 | Msa0477570:CDS | 45.0% |
| ! | TAAGGTTTTGCATGGGATGG+AGG | + | chr3_3:81808863-81808882 | Msa0477570:CDS | 45.0% |
| ! | AAGGTTTTGCATGGGATGGA+GGG | + | chr3_3:81808864-81808883 | Msa0477570:CDS | 45.0% |
| ! | CTGTATTCGTGCATTTGCTG+AGG | + | chr3_3:81808890-81808909 | Msa0477570:CDS | 45.0% |
| ! | GCATTCTCAGCAAGGGTATA+TGG | - | chr3_3:81808930-81808949 | None:intergenic | 45.0% |
| TATACCCTTGCTGAGAATGC+AGG | + | chr3_3:81808930-81808949 | Msa0477570:CDS | 45.0% | |
| CAAACCTGCATTCTCAGCAA+GGG | - | chr3_3:81808937-81808956 | None:intergenic | 45.0% | |
| TCAAACCTGCATTCTCAGCA+AGG | - | chr3_3:81808938-81808957 | None:intergenic | 45.0% | |
| CTGAGGAATCGTCATGCTAA+AGG | + | chr3_3:81808981-81809000 | Msa0477570:CDS | 45.0% | |
| GCTAAAGGTGAGATCAACAC+TGG | + | chr3_3:81808996-81809015 | Msa0477570:CDS | 45.0% | |
| !! | GGTGTAGGATTCGGTTTTGG+AGG | - | chr3_3:81807596-81807615 | None:intergenic | 50.0% |
| CGGCGATGATGTTGGATTGA+CGG | - | chr3_3:81807642-81807661 | None:intergenic | 50.0% | |
| !! | TCAACGAGCATTTTAGCGGC+GGG | - | chr3_3:81807799-81807818 | None:intergenic | 50.0% |
| AGCAGCGGAGTCTTGAGATT+TGG | - | chr3_3:81807827-81807846 | None:intergenic | 50.0% | |
| AAATCTCAAGACTCCGCTGC+TGG | + | chr3_3:81807826-81807845 | Msa0477570:CDS | 50.0% | |
| TGTCTCCTCCTTCTCTCTCA+TGG | + | chr3_3:81807898-81807917 | Msa0477570:CDS | 50.0% | |
| TGTTGATGTTCTCACCGCCA+TGG | + | chr3_3:81807972-81807991 | Msa0477570:CDS | 50.0% | |
| TCACGGAGATCCACCATTTC+CGG | - | chr3_3:81808141-81808160 | None:intergenic | 50.0% | |
| TACTGAGCTTGTGAAGGGCT+TGG | + | chr3_3:81808200-81808219 | Msa0477570:CDS | 50.0% | |
| ! | AAGGTTAGTCATGCTGCTGG+TGG | + | chr3_3:81808234-81808253 | Msa0477570:CDS | 50.0% |
| GAAGAGCTTTCTCTTGGGGA+TGG | + | chr3_3:81808633-81808652 | Msa0477570:CDS | 50.0% | |
| ACCACAACTGTGCTTGTTCG+TGG | + | chr3_3:81808696-81808715 | Msa0477570:CDS | 50.0% | |
| TCCACGAACAAGCACAGTTG+TGG | - | chr3_3:81808700-81808719 | None:intergenic | 50.0% | |
| TGCCTTGACAGCTCTATCTC+CGG | - | chr3_3:81808828-81808847 | None:intergenic | 50.0% | |
| TGTCAAGGCAATTGGGTGCT+TGG | + | chr3_3:81808838-81808857 | Msa0477570:CDS | 50.0% | |
| GTCAAGGCAATTGGGTGCTT+GGG | + | chr3_3:81808839-81808858 | Msa0477570:CDS | 50.0% | |
| ! | GCTTGGGCTAAGGTTTTGCA+TGG | + | chr3_3:81808855-81808874 | Msa0477570:CDS | 50.0% |
| ! | GGCTAAGGTTTTGCATGGGA+TGG | + | chr3_3:81808860-81808879 | Msa0477570:CDS | 50.0% |
| GCACTTGTGCTAACCAGCAA+TGG | - | chr3_3:81809077-81809096 | None:intergenic | 50.0% | |
| TAGCACAAGTGCCATCACCT+TGG | + | chr3_3:81809085-81809104 | Msa0477570:CDS | 50.0% | |
| ACACTCTGTTGCCAAGGTGA+TGG | - | chr3_3:81809099-81809118 | None:intergenic | 50.0% | |
| !! | GGTGTAGGATTCGGTTTTGG+AGG | - | chr3_3:81807596-81807615 | None:intergenic | 50.0% |
| CGGCGATGATGTTGGATTGA+CGG | - | chr3_3:81807642-81807661 | None:intergenic | 50.0% | |
| !! | TCAACGAGCATTTTAGCGGC+GGG | - | chr3_3:81807799-81807818 | None:intergenic | 50.0% |
| AGCAGCGGAGTCTTGAGATT+TGG | - | chr3_3:81807827-81807846 | None:intergenic | 50.0% | |
| AAATCTCAAGACTCCGCTGC+TGG | + | chr3_3:81807826-81807845 | Msa0477570:CDS | 50.0% | |
| TGTCTCCTCCTTCTCTCTCA+TGG | + | chr3_3:81807898-81807917 | Msa0477570:CDS | 50.0% | |
| TGTTGATGTTCTCACCGCCA+TGG | + | chr3_3:81807972-81807991 | Msa0477570:CDS | 50.0% | |
| TCACGGAGATCCACCATTTC+CGG | - | chr3_3:81808141-81808160 | None:intergenic | 50.0% | |
| TACTGAGCTTGTGAAGGGCT+TGG | + | chr3_3:81808200-81808219 | Msa0477570:CDS | 50.0% | |
| ! | AAGGTTAGTCATGCTGCTGG+TGG | + | chr3_3:81808234-81808253 | Msa0477570:CDS | 50.0% |
| GAAGAGCTTTCTCTTGGGGA+TGG | + | chr3_3:81808633-81808652 | Msa0477570:CDS | 50.0% | |
| ACCACAACTGTGCTTGTTCG+TGG | + | chr3_3:81808696-81808715 | Msa0477570:CDS | 50.0% | |
| TCCACGAACAAGCACAGTTG+TGG | - | chr3_3:81808700-81808719 | None:intergenic | 50.0% | |
| TGCCTTGACAGCTCTATCTC+CGG | - | chr3_3:81808828-81808847 | None:intergenic | 50.0% | |
| TGTCAAGGCAATTGGGTGCT+TGG | + | chr3_3:81808838-81808857 | Msa0477570:CDS | 50.0% | |
| GTCAAGGCAATTGGGTGCTT+GGG | + | chr3_3:81808839-81808858 | Msa0477570:CDS | 50.0% | |
| ! | GCTTGGGCTAAGGTTTTGCA+TGG | + | chr3_3:81808855-81808874 | Msa0477570:CDS | 50.0% |
| ! | GGCTAAGGTTTTGCATGGGA+TGG | + | chr3_3:81808860-81808879 | Msa0477570:CDS | 50.0% |
| GCACTTGTGCTAACCAGCAA+TGG | - | chr3_3:81809077-81809096 | None:intergenic | 50.0% | |
| TAGCACAAGTGCCATCACCT+TGG | + | chr3_3:81809085-81809104 | Msa0477570:CDS | 50.0% | |
| ACACTCTGTTGCCAAGGTGA+TGG | - | chr3_3:81809099-81809118 | None:intergenic | 50.0% | |
| !!! | GGTTTTGGAGGATCGGTGAG+GGG | - | chr3_3:81807584-81807603 | None:intergenic | 55.0% |
| !!! | CGGTTTTGGAGGATCGGTGA+GGG | - | chr3_3:81807585-81807604 | None:intergenic | 55.0% |
| !!! | TCGGTTTTGGAGGATCGGTG+AGG | - | chr3_3:81807586-81807605 | None:intergenic | 55.0% |
| ACCACCGTTGTTGTCATCGC+CGG | + | chr3_3:81807859-81807878 | Msa0477570:CDS | 55.0% | |
| TGCTCCGGCGATGACAACAA+CGG | - | chr3_3:81807866-81807885 | None:intergenic | 55.0% | |
| TTCAACCGGAACAGCCATGG+CGG | - | chr3_3:81807989-81808008 | None:intergenic | 55.0% | |
| GAGTTCAACCGGAACAGCCA+TGG | - | chr3_3:81807992-81808011 | None:intergenic | 55.0% | |
| TCTCTGTCATCGATCCCGCT+AGG | + | chr3_3:81808115-81808134 | Msa0477570:CDS | 55.0% | |
| ATCCACCATTTCCGGCCTAG+CGG | - | chr3_3:81808133-81808152 | None:intergenic | 55.0% | |
| ! | TGCTGGTGGACCTACCAGAA+TGG | + | chr3_3:81808248-81808267 | Msa0477570:CDS | 55.0% |
| CTCCGGAGATAGAGCTGTCA+AGG | + | chr3_3:81808823-81808842 | Msa0477570:CDS | 55.0% | |
| GCAATTGGGTGCTTGGGCTA+AGG | + | chr3_3:81808845-81808864 | Msa0477570:CDS | 55.0% | |
| GCTGCACCACATTCTCCTCA+AGG | - | chr3_3:81809055-81809074 | None:intergenic | 55.0% | |
| GAATGTGGTGCAGCCATTGC+TGG | + | chr3_3:81809061-81809080 | Msa0477570:CDS | 55.0% | |
| CCTCACACACTCTGTTGCCA+AGG | - | chr3_3:81809105-81809124 | None:intergenic | 55.0% | |
| CCTTGGCAACAGAGTGTGTG+AGG | + | chr3_3:81809102-81809121 | Msa0477570:CDS | 55.0% | |
| !!! | GGTTTTGGAGGATCGGTGAG+GGG | - | chr3_3:81807584-81807603 | None:intergenic | 55.0% |
| !!! | CGGTTTTGGAGGATCGGTGA+GGG | - | chr3_3:81807585-81807604 | None:intergenic | 55.0% |
| !!! | TCGGTTTTGGAGGATCGGTG+AGG | - | chr3_3:81807586-81807605 | None:intergenic | 55.0% |
| ACCACCGTTGTTGTCATCGC+CGG | + | chr3_3:81807859-81807878 | Msa0477570:CDS | 55.0% | |
| TGCTCCGGCGATGACAACAA+CGG | - | chr3_3:81807866-81807885 | None:intergenic | 55.0% | |
| TTCAACCGGAACAGCCATGG+CGG | - | chr3_3:81807989-81808008 | None:intergenic | 55.0% | |
| GAGTTCAACCGGAACAGCCA+TGG | - | chr3_3:81807992-81808011 | None:intergenic | 55.0% | |
| TCTCTGTCATCGATCCCGCT+AGG | + | chr3_3:81808115-81808134 | Msa0477570:CDS | 55.0% | |
| ATCCACCATTTCCGGCCTAG+CGG | - | chr3_3:81808133-81808152 | None:intergenic | 55.0% | |
| ! | TGCTGGTGGACCTACCAGAA+TGG | + | chr3_3:81808248-81808267 | Msa0477570:CDS | 55.0% |
| CTCCGGAGATAGAGCTGTCA+AGG | + | chr3_3:81808823-81808842 | Msa0477570:CDS | 55.0% | |
| GCAATTGGGTGCTTGGGCTA+AGG | + | chr3_3:81808845-81808864 | Msa0477570:CDS | 55.0% | |
| GCTGCACCACATTCTCCTCA+AGG | - | chr3_3:81809055-81809074 | None:intergenic | 55.0% | |
| GAATGTGGTGCAGCCATTGC+TGG | + | chr3_3:81809061-81809080 | Msa0477570:CDS | 55.0% | |
| CCTCACACACTCTGTTGCCA+AGG | - | chr3_3:81809105-81809124 | None:intergenic | 55.0% | |
| CCTTGGCAACAGAGTGTGTG+AGG | + | chr3_3:81809102-81809121 | Msa0477570:CDS | 55.0% | |
| AACGGCGTTAGCGACGGAAC+GGG | - | chr3_3:81807665-81807684 | None:intergenic | 60.0% | |
| GAACGGCGTTAGCGACGGAA+CGG | - | chr3_3:81807666-81807685 | None:intergenic | 60.0% | |
| AACGCCGTTCGCACCAGTCT+CGG | + | chr3_3:81807676-81807695 | Msa0477570:CDS | 60.0% | |
| !! | CATACCTTTGGGGCCGAGAC+TGG | - | chr3_3:81807692-81807711 | None:intergenic | 60.0% |
| CAGTCTCGGCCCCAAAGGTA+TGG | + | chr3_3:81807690-81807709 | Msa0477570:CDS | 60.0% | |
| CAAGACTCCGCTGCTGGTGA+TGG | + | chr3_3:81807832-81807851 | Msa0477570:CDS | 60.0% | |
| GGTGGTTCCATCACCAGCAG+CGG | - | chr3_3:81807842-81807861 | None:intergenic | 60.0% | |
| GGCGATGACAACAACGGTGG+TGG | - | chr3_3:81807860-81807879 | None:intergenic | 60.0% | |
| TCCGGCGATGACAACAACGG+TGG | - | chr3_3:81807863-81807882 | None:intergenic | 60.0% | |
| TCTCACCGCCATGGCTGTTC+CGG | + | chr3_3:81807981-81808000 | Msa0477570:CDS | 60.0% | |
| TGTCATCGATCCCGCTAGGC+CGG | + | chr3_3:81808119-81808138 | Msa0477570:CDS | 60.0% | |
| TCCACCATTTCCGGCCTAGC+GGG | - | chr3_3:81808132-81808151 | None:intergenic | 60.0% | |
| ! | GATTGCAGGTGGTGGTGCTC+CGG | + | chr3_3:81808806-81808825 | Msa0477570:CDS | 60.0% |
| AACGGCGTTAGCGACGGAAC+GGG | - | chr3_3:81807665-81807684 | None:intergenic | 60.0% | |
| GAACGGCGTTAGCGACGGAA+CGG | - | chr3_3:81807666-81807685 | None:intergenic | 60.0% | |
| AACGCCGTTCGCACCAGTCT+CGG | + | chr3_3:81807676-81807695 | Msa0477570:CDS | 60.0% | |
| !! | CATACCTTTGGGGCCGAGAC+TGG | - | chr3_3:81807692-81807711 | None:intergenic | 60.0% |
| CAGTCTCGGCCCCAAAGGTA+TGG | + | chr3_3:81807690-81807709 | Msa0477570:CDS | 60.0% | |
| CAAGACTCCGCTGCTGGTGA+TGG | + | chr3_3:81807832-81807851 | Msa0477570:CDS | 60.0% | |
| GGTGGTTCCATCACCAGCAG+CGG | - | chr3_3:81807842-81807861 | None:intergenic | 60.0% | |
| GGCGATGACAACAACGGTGG+TGG | - | chr3_3:81807860-81807879 | None:intergenic | 60.0% | |
| TCCGGCGATGACAACAACGG+TGG | - | chr3_3:81807863-81807882 | None:intergenic | 60.0% | |
| TCTCACCGCCATGGCTGTTC+CGG | + | chr3_3:81807981-81808000 | Msa0477570:CDS | 60.0% | |
| TGTCATCGATCCCGCTAGGC+CGG | + | chr3_3:81808119-81808138 | Msa0477570:CDS | 60.0% | |
| TCCACCATTTCCGGCCTAGC+GGG | - | chr3_3:81808132-81808151 | None:intergenic | 60.0% | |
| ! | GATTGCAGGTGGTGGTGCTC+CGG | + | chr3_3:81808806-81808825 | Msa0477570:CDS | 60.0% |
| GGAACGGGCGGCGATGATGT+TGG | - | chr3_3:81807650-81807669 | None:intergenic | 65.0% | |
| GGTGCGAACGGCGTTAGCGA+CGG | - | chr3_3:81807671-81807690 | None:intergenic | 65.0% | |
| ! | GAGGATGGTAGCGCCGTCGT+TGG | - | chr3_3:81807755-81807774 | None:intergenic | 65.0% |
| CGATCCCGCTAGGCCGGAAA+TGG | + | chr3_3:81808125-81808144 | Msa0477570:CDS | 65.0% | |
| TCCCGCTAGGCCGGAAATGG+TGG | + | chr3_3:81808128-81808147 | Msa0477570:CDS | 65.0% | |
| GGAACGGGCGGCGATGATGT+TGG | - | chr3_3:81807650-81807669 | None:intergenic | 65.0% | |
| GGTGCGAACGGCGTTAGCGA+CGG | - | chr3_3:81807671-81807690 | None:intergenic | 65.0% | |
| ! | GAGGATGGTAGCGCCGTCGT+TGG | - | chr3_3:81807755-81807774 | None:intergenic | 65.0% |
| CGATCCCGCTAGGCCGGAAA+TGG | + | chr3_3:81808125-81808144 | Msa0477570:CDS | 65.0% | |
| TCCCGCTAGGCCGGAAATGG+TGG | + | chr3_3:81808128-81808147 | Msa0477570:CDS | 65.0% | |
| GGAGGATCGGTGAGGGGCTG+CGG | - | chr3_3:81807578-81807597 | None:intergenic | 70.0% | |
| GGCGTTAGCGACGGAACGGG+CGG | - | chr3_3:81807662-81807681 | None:intergenic | 70.0% | |
| GGGGCCGAGACTGGTGCGAA+CGG | - | chr3_3:81807683-81807702 | None:intergenic | 70.0% | |
| CGCACCAGTCTCGGCCCCAA+AGG | + | chr3_3:81807685-81807704 | Msa0477570:CDS | 70.0% | |
| GGAGGATCGGTGAGGGGCTG+CGG | - | chr3_3:81807578-81807597 | None:intergenic | 70.0% | |
| GGCGTTAGCGACGGAACGGG+CGG | - | chr3_3:81807662-81807681 | None:intergenic | 70.0% | |
| GGGGCCGAGACTGGTGCGAA+CGG | - | chr3_3:81807683-81807702 | None:intergenic | 70.0% | |
| CGCACCAGTCTCGGCCCCAA+AGG | + | chr3_3:81807685-81807704 | Msa0477570:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 81807565 | 81809163 | 81807565 | ID=Msa0477570;Name=Msa0477570 |
| chr3_3 | mRNA | 81807565 | 81809163 | 81807565 | ID=Msa0477570-mRNA-1;Parent=Msa0477570;Name=Msa0477570-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|532 |
| chr3_3 | exon | 81807565 | 81809163 | 81807565 | ID=Msa0477570-mRNA-1:exon:22634;Parent=Msa0477570-mRNA-1 |
| chr3_3 | CDS | 81807565 | 81809163 | 81807565 | ID=Msa0477570-mRNA-1:cds;Parent=Msa0477570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
