Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364600 | XP_024627046.1 | 85.121 | 289 | 32 | 2 | 1 | 288 | 1 | 279 | 1.58e-173 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364600 | sp|Q84K34|SIL10_ARATH | 34.677 | 248 | 148 | 3 | 4 | 247 | 103 | 340 | 8.90e-43 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364600 | G7KWT8 | 85.121 | 289 | 32 | 2 | 1 | 288 | 1 | 279 | 7.54e-174 | 496 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1011570 | Msa1364600 | 0.838557 | 2.678801e-57 | -8.615850e-47 |
| Msa1142690 | Msa1364600 | 0.847806 | 9.157404e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364600 | MtrunA17_Chr7g0223111 | 85.121 | 289 | 32 | 2 | 1 | 288 | 27 | 305 | 2.62e-177 | 497 |
| Msa1364600 | MtrunA17_Chr5g0428191 | 75.618 | 283 | 59 | 1 | 1 | 283 | 1 | 273 | 1.33e-153 | 436 |
| Msa1364600 | MtrunA17_Chr5g0433661 | 70.671 | 283 | 70 | 2 | 3 | 282 | 37 | 309 | 1.06e-137 | 397 |
| Msa1364600 | MtrunA17_Chr1g0169371 | 74.609 | 256 | 54 | 2 | 28 | 283 | 3 | 247 | 1.65e-131 | 379 |
| Msa1364600 | MtrunA17_Chr7g0259431 | 71.212 | 264 | 66 | 1 | 25 | 288 | 7 | 260 | 2.01e-128 | 371 |
| Msa1364600 | MtrunA17_Chr5g0433631 | 67.719 | 285 | 79 | 2 | 4 | 285 | 26 | 300 | 3.27e-127 | 370 |
| Msa1364600 | MtrunA17_Chr5g0433731 | 71.004 | 269 | 63 | 4 | 26 | 290 | 8 | 265 | 9.65e-127 | 365 |
| Msa1364600 | MtrunA17_Chr5g0424971 | 64.261 | 291 | 86 | 4 | 4 | 288 | 11 | 289 | 2.83e-126 | 367 |
| Msa1364600 | MtrunA17_Chr5g0433531 | 66.551 | 287 | 82 | 3 | 1 | 283 | 1 | 277 | 4.97e-123 | 358 |
| Msa1364600 | MtrunA17_Chr5g0433721 | 76.170 | 235 | 46 | 1 | 49 | 283 | 2 | 226 | 2.65e-122 | 354 |
| Msa1364600 | MtrunA17_Chr5g0433411 | 64.085 | 284 | 88 | 3 | 4 | 283 | 26 | 299 | 1.31e-119 | 350 |
| Msa1364600 | MtrunA17_Chr2g0298951 | 58.667 | 300 | 101 | 3 | 27 | 313 | 9 | 298 | 8.26e-114 | 334 |
| Msa1364600 | MtrunA17_Chr5g0433521 | 66.031 | 262 | 76 | 2 | 27 | 285 | 23 | 274 | 1.80e-113 | 333 |
| Msa1364600 | MtrunA17_Chr5g0433541 | 69.748 | 238 | 62 | 1 | 1 | 238 | 1 | 228 | 2.44e-109 | 320 |
| Msa1364600 | MtrunA17_Chr5g0433551 | 69.748 | 238 | 62 | 1 | 1 | 238 | 1 | 228 | 2.44e-109 | 320 |
| Msa1364600 | MtrunA17_Chr2g0298941 | 62.613 | 222 | 68 | 3 | 70 | 286 | 1 | 212 | 1.22e-88 | 268 |
| Msa1364600 | MtrunA17_Chr5g0433881 | 59.843 | 254 | 66 | 7 | 53 | 285 | 17 | 255 | 6.05e-86 | 263 |
| Msa1364600 | MtrunA17_Chr1g0169381 | 72.892 | 166 | 34 | 2 | 1 | 166 | 1 | 155 | 4.08e-81 | 245 |
| Msa1364600 | MtrunA17_Chr4g0028681 | 72.000 | 150 | 31 | 2 | 68 | 216 | 1 | 140 | 2.64e-64 | 202 |
| Msa1364600 | MtrunA17_Chr4g0051351 | 45.415 | 229 | 114 | 3 | 6 | 234 | 92 | 309 | 1.38e-63 | 206 |
| Msa1364600 | MtrunA17_Chr8g0352701 | 26.818 | 220 | 143 | 4 | 10 | 220 | 52 | 262 | 2.98e-19 | 87.4 |
| Msa1364600 | MtrunA17_Chr3g0083571 | 34.677 | 124 | 77 | 2 | 5 | 124 | 45 | 168 | 3.55e-19 | 87.4 |
| Msa1364600 | MtrunA17_Chr8g0346801 | 25.000 | 272 | 177 | 6 | 3 | 267 | 36 | 287 | 4.07e-18 | 84.3 |
| Msa1364600 | MtrunA17_Chr7g0275701 | 36.000 | 125 | 78 | 1 | 3 | 125 | 53 | 177 | 4.29e-18 | 84.3 |
| Msa1364600 | MtrunA17_Chr3g0126851 | 36.752 | 117 | 72 | 1 | 10 | 124 | 59 | 175 | 7.19e-18 | 84.0 |
| Msa1364600 | MtrunA17_Chr7g0253271 | 25.664 | 226 | 143 | 5 | 27 | 248 | 3 | 207 | 1.80e-17 | 80.5 |
| Msa1364600 | MtrunA17_Chr1g0175721 | 25.591 | 254 | 164 | 7 | 11 | 248 | 58 | 302 | 3.14e-17 | 81.6 |
| Msa1364600 | MtrunA17_Chr1g0147041 | 35.897 | 117 | 73 | 1 | 10 | 124 | 67 | 183 | 8.60e-17 | 80.9 |
| Msa1364600 | MtrunA17_Chr7g0258941 | 26.484 | 219 | 143 | 6 | 11 | 220 | 59 | 268 | 4.79e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364600 | AT5G37930.1 | 34.677 | 248 | 148 | 3 | 4 | 247 | 103 | 340 | 9.05e-44 | 155 |
| Msa1364600 | AT5G37870.1 | 32.283 | 254 | 157 | 6 | 6 | 253 | 37 | 281 | 5.02e-38 | 138 |
| Msa1364600 | AT1G66650.1 | 32.271 | 251 | 157 | 6 | 4 | 247 | 76 | 320 | 1.14e-36 | 136 |
| Msa1364600 | AT5G37890.1 | 33.480 | 227 | 141 | 4 | 10 | 234 | 47 | 265 | 1.23e-35 | 132 |
| Msa1364600 | AT1G66620.1 | 31.890 | 254 | 154 | 6 | 5 | 250 | 35 | 277 | 2.08e-35 | 132 |
| Msa1364600 | AT1G66660.2 | 31.102 | 254 | 161 | 6 | 2 | 248 | 94 | 340 | 2.95e-35 | 133 |
| Msa1364600 | AT1G66630.1 | 30.682 | 264 | 155 | 5 | 5 | 247 | 40 | 296 | 1.51e-34 | 130 |
| Msa1364600 | AT5G37910.1 | 32.016 | 253 | 148 | 8 | 11 | 256 | 35 | 270 | 6.98e-32 | 122 |
| Msa1364600 | AT5G62800.1 | 31.538 | 260 | 165 | 6 | 11 | 264 | 40 | 292 | 3.55e-29 | 116 |
| Msa1364600 | AT5G62800.2 | 36.269 | 193 | 113 | 4 | 11 | 200 | 40 | 225 | 3.33e-28 | 113 |
| Msa1364600 | AT1G66610.1 | 25.667 | 300 | 141 | 9 | 5 | 234 | 47 | 334 | 1.84e-18 | 86.3 |
| Msa1364600 | AT3G61790.1 | 35.484 | 124 | 78 | 1 | 3 | 124 | 52 | 175 | 3.49e-18 | 85.1 |
| Msa1364600 | AT1G66660.1 | 26.761 | 213 | 140 | 6 | 43 | 248 | 13 | 216 | 1.13e-17 | 81.6 |
| Msa1364600 | AT4G27880.1 | 35.897 | 117 | 73 | 1 | 10 | 124 | 60 | 176 | 1.12e-16 | 80.9 |
| Msa1364600 | AT2G41980.1 | 25.098 | 255 | 166 | 8 | 10 | 248 | 53 | 298 | 4.94e-16 | 78.6 |
| Msa1364600 | AT3G58040.1 | 25.098 | 255 | 166 | 8 | 10 | 248 | 56 | 301 | 8.05e-16 | 77.8 |
| Msa1364600 | AT3G58040.3 | 25.098 | 255 | 166 | 8 | 10 | 248 | 56 | 301 | 8.05e-16 | 77.8 |
| Msa1364600 | AT3G58040.2 | 33.333 | 117 | 76 | 1 | 10 | 124 | 56 | 172 | 1.14e-15 | 75.9 |
| Msa1364600 | AT1G66610.2 | 44.444 | 81 | 45 | 0 | 5 | 85 | 152 | 232 | 1.94e-14 | 72.8 |
| Msa1364600 | AT1G66610.2 | 47.619 | 63 | 33 | 0 | 11 | 73 | 53 | 115 | 4.77e-12 | 65.9 |
| Msa1364600 | AT5G37900.1 | 26.943 | 193 | 131 | 5 | 59 | 247 | 48 | 234 | 4.63e-11 | 63.2 |
Find 79 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTGGTCCTAACTCTTC+TGG | 0.129441 | tig0018169:-10445 | Msa1364600:CDS |
| CCATGTTACTGTCCCCTTTC+AGG | 0.141370 | tig0018169:-10706 | Msa1364600:CDS |
| TCTAAGTATTCCTGTCTTTC+AGG | 0.178018 | tig0018169:-12391 | Msa1364600:intron |
| AGTAATTTGTATTCTTATTA+AGG | 0.178934 | tig0018169:-9514 | Msa1364600:CDS |
| ACAAAGACCATAAGAAAATT+TGG | 0.211088 | tig0018169:+10615 | None:intergenic |
| CAATAATGCTACTATGAGTT+TGG | 0.241803 | tig0018169:-10488 | Msa1364600:CDS |
| TGTATTATTTCTCCACTCAT+AGG | 0.290006 | tig0018169:+9570 | None:intergenic |
| GATAGTATATATGTTGAAAA+AGG | 0.305633 | tig0018169:-9424 | Msa1364600:CDS |
| AAATGAGTTACACTGGAAAT+AGG | 0.344851 | tig0018169:-10756 | Msa1364600:CDS |
| CTGCTCTTGGATTTAGTAAT+CGG | 0.345058 | tig0018169:+9651 | None:intergenic |
| TGACACTTGTTCCTAAGTTT+AGG | 0.348740 | tig0018169:+10883 | None:intergenic |
| GTCAAATCCTTAATAAGAAA+TGG | 0.375266 | tig0018169:+9480 | None:intergenic |
| CGAGTATAGTTATGATATAT+TGG | 0.382189 | tig0018169:-10419 | Msa1364600:CDS |
| ATTGTCTCCTTGAAGTCTAA+TGG | 0.388929 | tig0018169:-10559 | Msa1364600:CDS |
| CGAATGCAAAACATGGTTGC+AGG | 0.390717 | tig0018169:-10783 | Msa1364600:CDS |
| GGTGGATGATTGCCTGCTCT+TGG | 0.401055 | tig0018169:+9638 | None:intergenic |
| GCATTGGTCCTAACTCTTCT+GGG | 0.401380 | tig0018169:-10444 | Msa1364600:CDS |
| CCCCATGTTTATGGCTGAAA+TGG | 0.405710 | tig0018169:+10647 | None:intergenic |
| TCATATAGTTGGTGGACGTT+TGG | 0.416184 | tig0018169:+12655 | None:intergenic |
| GGGCGATTGTCTTCATGATA+AGG | 0.417684 | tig0018169:+9591 | None:intergenic |
| AATAATGCTACTATGAGTTT+GGG | 0.418649 | tig0018169:-10487 | Msa1364600:CDS |
| GGCGATTGTCTTCATGATAA+GGG | 0.428503 | tig0018169:+9592 | None:intergenic |
| GCAGTCAATATTTGCTGCAT+TGG | 0.437797 | tig0018169:-10460 | Msa1364600:CDS |
| AACAAAGTCACAACCTGAAA+GGG | 0.450677 | tig0018169:+10693 | None:intergenic |
| GGTTCCACCATTAGACTTCA+AGG | 0.451128 | tig0018169:+10552 | None:intergenic |
| GCCAACGGCGGCAGATGATA+AGG | 0.458844 | tig0018169:+9617 | None:intergenic |
| GTTGTAATTCAGTGTGATAA+TGG | 0.467413 | tig0018169:-10931 | Msa1364600:intron |
| CTGAGAAGTTGTAGAATCCT+TGG | 0.468797 | tig0018169:+12605 | None:intergenic |
| GTATTATTTCTCCACTCATA+GGG | 0.469230 | tig0018169:+9571 | None:intergenic |
| TGAAAGACAGGAATACTTAG+AGG | 0.482175 | tig0018169:+12393 | None:intergenic |
| TGTCTGAACTCTTAACCCTC+AGG | 0.482923 | tig0018169:+9859 | None:intergenic |
| TACTCGGACCCAGAAGAGTT+AGG | 0.488196 | tig0018169:+10436 | None:intergenic |
| AGAGGTTCAGAAGAACGAAA+TGG | 0.491511 | tig0018169:+10301 | None:intergenic |
| TTGGTCTTTCATATAGTTGG+TGG | 0.492622 | tig0018169:+12647 | None:intergenic |
| ACCTTATCATCTGCCGCCGT+TGG | 0.498696 | tig0018169:-9618 | Msa1364600:CDS |
| GTTCCTAAGTTTAGGACAGC+AGG | 0.503985 | tig0018169:+10891 | None:intergenic |
| CTACCTGCTGTCCTAAACTT+AGG | 0.504618 | tig0018169:-10894 | Msa1364600:CDS |
| CAATATATCATAACTATACT+CGG | 0.508438 | tig0018169:+10420 | None:intergenic |
| CAAATGCATACCTGAAAGAC+AGG | 0.508688 | tig0018169:+12381 | None:intergenic |
| GTCTGAACTCTTAACCCTCA+GGG | 0.537566 | tig0018169:+9860 | None:intergenic |
| CAACAAAGTCACAACCTGAA+AGG | 0.540955 | tig0018169:+10692 | None:intergenic |
| GGGTTATGCAAATTTCTAGC+TGG | 0.541744 | tig0018169:+10278 | None:intergenic |
| ATGCAAATTTCTAGCTGGAG+AGG | 0.549301 | tig0018169:+10283 | None:intergenic |
| AACCATTTCAGCCATAAACA+TGG | 0.562638 | tig0018169:-10649 | Msa1364600:CDS |
| TTGGATTTAGTAATCGGTGA+TGG | 0.570506 | tig0018169:+9657 | None:intergenic |
| CGATTACTAAATCCAAGAGC+AGG | 0.580228 | tig0018169:-9650 | Msa1364600:CDS |
| CTATTGGTCAAAAGGTGCAA+TGG | 0.580950 | tig0018169:-12469 | Msa1364600:intron |
| ACCATTTCAGCCATAAACAT+GGG | 0.588005 | tig0018169:-10648 | Msa1364600:CDS |
| ATGTTTATGGCTGAAATGGT+TGG | 0.588725 | tig0018169:+10651 | None:intergenic |
| TGGAACCATTGTTCTTCAAG+AGG | 0.598400 | tig0018169:-10536 | Msa1364600:CDS |
| GAAGACAATCGCCCTATGAG+TGG | 0.598862 | tig0018169:-9582 | Msa1364600:CDS |
| CCTGAAAGGGGACAGTAACA+TGG | 0.599066 | tig0018169:+10706 | None:intergenic |
| ACTTTGAGAATTGAACAAGA+AGG | 0.601256 | tig0018169:-9459 | Msa1364600:CDS |
| TTAGAGTTTGAAATCGTCAG+AGG | 0.607477 | tig0018169:+12444 | None:intergenic |
| AGACTTCAAGGAGACAATGA+AGG | 0.608582 | tig0018169:+10564 | None:intergenic |
| TCTACATAATCACCCCGACT+AGG | 0.616280 | tig0018169:-9893 | Msa1364600:CDS |
| GAGTTGCTAAAGTAAACTGT+TGG | 0.616702 | tig0018169:+10347 | None:intergenic |
| GTTCTTCAAGAGGAAAATGA+CGG | 0.617899 | tig0018169:-10526 | Msa1364600:CDS |
| CCATTTCAGCCATAAACATG+GGG | 0.621391 | tig0018169:-10647 | Msa1364600:CDS |
| GTCTCCTTGAAGTCTAATGG+TGG | 0.621511 | tig0018169:-10556 | Msa1364600:CDS |
| AGAAGTTGTAGAATCCTTGG+TGG | 0.623902 | tig0018169:+12608 | None:intergenic |
| GAATGCAAAACATGGTTGCA+GGG | 0.629567 | tig0018169:-10782 | Msa1364600:CDS |
| AGTAATCGGTGATGGTGCGG+TGG | 0.630096 | tig0018169:+9665 | None:intergenic |
| ATCAACACATCAAGCCACCA+AGG | 0.636355 | tig0018169:-12622 | Msa1364600:five_prime_UTR |
| AGGGAGAAAATGAGTTACAC+TGG | 0.636460 | tig0018169:-10763 | Msa1364600:CDS |
| CCATGTCCGAATGCAAAACA+TGG | 0.639006 | tig0018169:-10790 | Msa1364600:CDS |
| ACAAAGTCACAACCTGAAAG+GGG | 0.645303 | tig0018169:+10694 | None:intergenic |
| ATGATAAGGGTTGCCAACGG+CGG | 0.650531 | tig0018169:+9605 | None:intergenic |
| TTCATGATAAGGGTTGCCAA+CGG | 0.655727 | tig0018169:+9602 | None:intergenic |
| CTGAACTCTTAACCCTCAGG+GGG | 0.662405 | tig0018169:+9862 | None:intergenic |
| AACGGCGGCAGATGATAAGG+TGG | 0.663201 | tig0018169:+9620 | None:intergenic |
| GGGGATCATCTTCCTAGTCG+GGG | 0.667464 | tig0018169:+9881 | None:intergenic |
| AGACACAGTAGCCAATGTGA+AGG | 0.670298 | tig0018169:-9841 | Msa1364600:CDS |
| TTTAGTAATCGGTGATGGTG+CGG | 0.670627 | tig0018169:+9662 | None:intergenic |
| TCTGAACTCTTAACCCTCAG+GGG | 0.679402 | tig0018169:+9861 | None:intergenic |
| TGATGATGGCATATTGATGA+CGG | 0.691545 | tig0018169:-9397 | Msa1364600:CDS |
| AAGAACGAAATGGAATCACA+AGG | 0.699518 | tig0018169:+10311 | None:intergenic |
| GGAGATAGGCGGTACCATGG+GGG | 0.718009 | tig0018169:+10258 | None:intergenic |
| CATTTCAGCCATAAACATGG+GGG | 0.731821 | tig0018169:-10646 | Msa1364600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAGTATTATAATTTTTTTTA+AGG | - | tig0018169:10552-10571 | Msa1364600:CDS | 10.0% |
| !!! | TCAAAATTTTTTTTTTCTTA+TGG | - | tig0018169:11453-11472 | Msa1364600:intron | 10.0% |
| !!! | ATATTCTTTTATTGATTTAA+TGG | - | tig0018169:12108-12127 | Msa1364600:intron | 10.0% |
| !! | TTGATTATATAAAGTTGTAA+TGG | - | tig0018169:9543-9562 | Msa1364600:CDS | 15.0% |
| !! | TAAATATGAGTATATAATTG+GGG | + | tig0018169:10042-10061 | None:intergenic | 15.0% |
| !! | CTAAATATGAGTATATAATT+GGG | + | tig0018169:10043-10062 | None:intergenic | 15.0% |
| !!! | AGAAACTATTTTATTTTGTT+AGG | + | tig0018169:10520-10539 | None:intergenic | 15.0% |
| !! | AATAAAATAGTTTCTTTCAA+TGG | - | tig0018169:10525-10544 | Msa1364600:CDS | 15.0% |
| !! | ATAAAATAGTTTCTTTCAAT+GGG | - | tig0018169:10526-10545 | Msa1364600:CDS | 15.0% |
| !! | GAAAATAATAAGACTTTAAT+TGG | + | tig0018169:11835-11854 | None:intergenic | 15.0% |
| !! | AAAGAAAGCAAAATTTATTA+CGG | + | tig0018169:12037-12056 | None:intergenic | 15.0% |
| !!! | AGTAATTTGTATTCTTATTA+AGG | - | tig0018169:12531-12550 | Msa1364600:intron | 15.0% |
| !!! | TAATGGTTTTTAATCACTAT+TGG | - | tig0018169:9560-9579 | Msa1364600:CDS | 20.0% |
| !! | ATTTATATGCAATATGTTTC+TGG | - | tig0018169:9733-9752 | Msa1364600:intron | 20.0% |
| !! | ATAGATTCTGATAATATCTT+AGG | - | tig0018169:9961-9980 | Msa1364600:intron | 20.0% |
| !! | AAATATGAGTATATAATTGG+GGG | + | tig0018169:10041-10060 | None:intergenic | 20.0% |
| !! | CCTAAATATGAGTATATAAT+TGG | + | tig0018169:10044-10063 | None:intergenic | 20.0% |
| !! | CCAATTATATACTCATATTT+AGG | - | tig0018169:10041-10060 | Msa1364600:intron | 20.0% |
| !! | ATTAATTAGAAAATGCATGA+TGG | - | tig0018169:10132-10151 | Msa1364600:intron | 20.0% |
| !!! | ACTTGATTTTCTCAATTTAA+AGG | - | tig0018169:10201-10220 | Msa1364600:intron | 20.0% |
| !! | AATAAAATTAAGTGAAAGAG+AGG | - | tig0018169:10485-10504 | Msa1364600:CDS | 20.0% |
| !! | TAAAATAGTTTCTTTCAATG+GGG | - | tig0018169:10527-10546 | Msa1364600:CDS | 20.0% |
| !! | TATAAAAGCTCAAAAATAGA+AGG | + | tig0018169:10830-10849 | None:intergenic | 20.0% |
| !! | CAATATATCATAACTATACT+CGG | + | tig0018169:11628-11647 | None:intergenic | 20.0% |
| !!! | CTAACAAAACAACTTTATTT+TGG | + | tig0018169:11917-11936 | None:intergenic | 20.0% |
| !!! | TTTTATTGATTTAATGGCAA+TGG | - | tig0018169:12114-12133 | Msa1364600:intron | 20.0% |
| !! | GATAGTATATATGTTGAAAA+AGG | - | tig0018169:12621-12640 | Msa1364600:five_prime_UTR | 20.0% |
| !!! | TTTTTGGTCTTTCATATAGT+TGG | + | tig0018169:9404-9423 | None:intergenic | 25.0% |
| ! | TTTAATCACTATTGGTCAAA+AGG | - | tig0018169:9568-9587 | Msa1364600:CDS | 25.0% |
| ! | TAACATAGAATTCACTTTAG+AGG | - | tig0018169:10085-10104 | Msa1364600:intron | 25.0% |
| ! | AACATAGAATTCACTTTAGA+GGG | - | tig0018169:10086-10105 | Msa1364600:intron | 25.0% |
| !!! | AATTGTTTTGTGTCTCTATA+GGG | + | tig0018169:10291-10310 | None:intergenic | 25.0% |
| !!! | TAATTGTTTTGTGTCTCTAT+AGG | + | tig0018169:10292-10311 | None:intergenic | 25.0% |
| ! | TATAGAGACACAAAACAATT+AGG | - | tig0018169:10291-10310 | Msa1364600:CDS | 25.0% |
| ! | ATAGAGACACAAAACAATTA+GGG | - | tig0018169:10292-10311 | Msa1364600:CDS | 25.0% |
| !!! | AATTGCGTTTTGATTTTACT+GGG | + | tig0018169:10397-10416 | None:intergenic | 25.0% |
| ! | AAAATAGTTTCTTTCAATGG+GGG | - | tig0018169:10528-10547 | Msa1364600:CDS | 25.0% |
| !! | AAGACTTGTTTGATTTACAT+TGG | - | tig0018169:10742-10761 | Msa1364600:CDS | 25.0% |
| !! | AGACTTGTTTGATTTACATT+GGG | - | tig0018169:10743-10762 | Msa1364600:CDS | 25.0% |
| ! | AAAGTTTAGAGAAACAATAC+AGG | + | tig0018169:10868-10887 | None:intergenic | 25.0% |
| !! | TGTATTGTTTCTCTAAACTT+TGG | - | tig0018169:10867-10886 | Msa1364600:CDS | 25.0% |
| !! | CTATACTGCTATAGTATTTT+GGG | - | tig0018169:10913-10932 | Msa1364600:CDS | 25.0% |
| ! | AAAATCAATGTACTCAAAGA+CGG | + | tig0018169:10952-10971 | None:intergenic | 25.0% |
| !! | CTTTATTTGATTCTAGCAAA+TGG | - | tig0018169:11060-11079 | Msa1364600:intron | 25.0% |
| !!! | TGGTTCAAAGTTTAATTTGA+TGG | - | tig0018169:11080-11099 | Msa1364600:intron | 25.0% |
| !! | TCTCAAACCAAATTTTCTTA+TGG | - | tig0018169:11423-11442 | Msa1364600:intron | 25.0% |
| ! | ACAAAGACCATAAGAAAATT+TGG | + | tig0018169:11433-11452 | None:intergenic | 25.0% |
| ! | AATAATGCTACTATGAGTTT+GGG | - | tig0018169:11558-11577 | Msa1364600:intron | 25.0% |
| ! | CGAGTATAGTTATGATATAT+TGG | - | tig0018169:11626-11645 | Msa1364600:intron | 25.0% |
| ! | ACGAAAAAAAAGCAAAGAAA+AGG | + | tig0018169:11811-11830 | None:intergenic | 25.0% |
| !! | GCATTTTATCTCAAATTCAT+CGG | - | tig0018169:11880-11899 | Msa1364600:intron | 25.0% |
| ! | AAATTTATTACGGTACAACA+GGG | + | tig0018169:12027-12046 | None:intergenic | 25.0% |
| ! | AAAATTTATTACGGTACAAC+AGG | + | tig0018169:12028-12047 | None:intergenic | 25.0% |
| !! | GACTTTTCCATTTCTTATTA+AGG | - | tig0018169:12558-12577 | Msa1364600:intron | 25.0% |
| ! | GTCAAATCCTTAATAAGAAA+TGG | + | tig0018169:12568-12587 | None:intergenic | 25.0% |
| TCTATCCAAAAAAATCCGTT+GGG | + | tig0018169:9946-9965 | None:intergenic | 30.0% | |
| ATCTATCCAAAAAAATCCGT+TGG | + | tig0018169:9947-9966 | None:intergenic | 30.0% | |
| !! | CAGTTTTGTAAAGTTGAGTT+AGG | + | tig0018169:9999-10018 | None:intergenic | 30.0% |
| !! | CTTTACAAAACTGACTTGTA+AGG | - | tig0018169:10006-10025 | Msa1364600:intron | 30.0% |
| !! | AAATGCATGATGGATATTGA+AGG | - | tig0018169:10142-10161 | Msa1364600:intron | 30.0% |
| AAGGTACATCATTACAATCA+AGG | - | tig0018169:10161-10180 | Msa1364600:intron | 30.0% | |
| AGGTACATCATTACAATCAA+GGG | - | tig0018169:10162-10181 | Msa1364600:intron | 30.0% | |
| TAGTAGGAAACAGAAAAGAA+TGG | - | tig0018169:10252-10271 | Msa1364600:intron | 30.0% | |
| ATAGATGCATAACAAATGAC+AGG | - | tig0018169:10325-10344 | Msa1364600:CDS | 30.0% | |
| TAGATGCATAACAAATGACA+GGG | - | tig0018169:10326-10345 | Msa1364600:CDS | 30.0% | |
| !!! | ATTGCGTTTTGATTTTACTG+GGG | + | tig0018169:10396-10415 | None:intergenic | 30.0% |
| !!! | GAATTGCGTTTTGATTTTAC+TGG | + | tig0018169:10398-10417 | None:intergenic | 30.0% |
| !!! | ATGTGTTTTTTAAGCCTTAG+AGG | - | tig0018169:10717-10736 | Msa1364600:CDS | 30.0% |
| TTCTCTAAACTTTGGTATTG+TGG | - | tig0018169:10875-10894 | Msa1364600:CDS | 30.0% | |
| AAATACTATAGCAGTATAGC+AGG | + | tig0018169:10912-10931 | None:intergenic | 30.0% | |
| ! | GCTATACTGCTATAGTATTT+TGG | - | tig0018169:10912-10931 | Msa1364600:CDS | 30.0% |
| GTTGTAATTCAGTGTGATAA+TGG | - | tig0018169:11114-11133 | Msa1364600:intron | 30.0% | |
| AAATGAGTTACACTGGAAAT+AGG | - | tig0018169:11289-11308 | Msa1364600:intron | 30.0% | |
| ! | ATTTTCCTCTTGAAGAACAA+TGG | + | tig0018169:11517-11536 | None:intergenic | 30.0% |
| CAATAATGCTACTATGAGTT+TGG | - | tig0018169:11557-11576 | Msa1364600:intron | 30.0% | |
| AAAAGCAAAGAAAAGGAGAT+AGG | + | tig0018169:11804-11823 | None:intergenic | 30.0% | |
| ! | GATCAATGTGTTGTTAATTG+CGG | - | tig0018169:12074-12093 | Msa1364600:intron | 30.0% |
| AAAAATCATCTCCTTCACAT+TGG | + | tig0018169:12218-12237 | None:intergenic | 30.0% | |
| ! | GTATTATTTCTCCACTCATA+GGG | + | tig0018169:12477-12496 | None:intergenic | 30.0% |
| ! | TGTATTATTTCTCCACTCAT+AGG | + | tig0018169:12478-12497 | None:intergenic | 30.0% |
| ! | ACTTTGAGAATTGAACAAGA+AGG | - | tig0018169:12586-12605 | Msa1364600:intron | 30.0% |
| TTGAAAAAGGATAGTGATGA+TGG | - | tig0018169:12634-12653 | Msa1364600:five_prime_UTR | 30.0% | |
| ! | TTGGTCTTTCATATAGTTGG+TGG | + | tig0018169:9401-9420 | None:intergenic | 35.0% |
| !!! | TGGCTTGATGTGTTGATTTT+TGG | + | tig0018169:9420-9439 | None:intergenic | 35.0% |
| ! | TTAGAGTTTGAAATCGTCAG+AGG | + | tig0018169:9604-9623 | None:intergenic | 35.0% |
| TGAAAGACAGGAATACTTAG+AGG | + | tig0018169:9655-9674 | None:intergenic | 35.0% | |
| TCTAAGTATTCCTGTCTTTC+AGG | - | tig0018169:9654-9673 | Msa1364600:CDS | 35.0% | |
| !!! | TTTAAGGCCCATAGTTTTAG+AGG | - | tig0018169:10568-10587 | Msa1364600:CDS | 35.0% |
| !! | AACCGAACCTCTAAAACTAT+GGG | + | tig0018169:10578-10597 | None:intergenic | 35.0% |
| !!! | ATAGTTTTAGAGGTTCGGTT+CGG | - | tig0018169:10578-10597 | Msa1364600:CDS | 35.0% |
| CTACTAGACATCATTTGTCA+GGG | + | tig0018169:10633-10652 | None:intergenic | 35.0% | |
| ACTACTAGACATCATTTGTC+AGG | + | tig0018169:10634-10653 | None:intergenic | 35.0% | |
| TGACACTTGTTCCTAAGTTT+AGG | + | tig0018169:11165-11184 | None:intergenic | 35.0% | |
| AACAAAGTCACAACCTGAAA+GGG | + | tig0018169:11355-11374 | None:intergenic | 35.0% | |
| ATGTTTATGGCTGAAATGGT+TGG | + | tig0018169:11397-11416 | None:intergenic | 35.0% | |
| AACCATTTCAGCCATAAACA+TGG | - | tig0018169:11396-11415 | Msa1364600:intron | 35.0% | |
| ACCATTTCAGCCATAAACAT+GGG | - | tig0018169:11397-11416 | Msa1364600:intron | 35.0% | |
| ATTGTCTCCTTGAAGTCTAA+TGG | - | tig0018169:11486-11505 | Msa1364600:intron | 35.0% | |
| GTTCTTCAAGAGGAAAATGA+CGG | - | tig0018169:11519-11538 | Msa1364600:intron | 35.0% | |
| GAGTTGCTAAAGTAAACTGT+TGG | + | tig0018169:11701-11720 | None:intergenic | 35.0% | |
| AAGAACGAAATGGAATCACA+AGG | + | tig0018169:11737-11756 | None:intergenic | 35.0% | |
| TTGGATGTTGTAATTGGCAA+GGG | + | tig0018169:12311-12330 | None:intergenic | 35.0% | |
| CTTCTCTTGGATGTTGTAAT+TGG | + | tig0018169:12317-12336 | None:intergenic | 35.0% | |
| TTGGATTTAGTAATCGGTGA+TGG | + | tig0018169:12391-12410 | None:intergenic | 35.0% | |
| CTGCTCTTGGATTTAGTAAT+CGG | + | tig0018169:12397-12416 | None:intergenic | 35.0% | |
| !! | TGATGATGGCATATTGATGA+CGG | - | tig0018169:12648-12667 | Msa1364600:five_prime_UTR | 35.0% |
| !! | TCATATAGTTGGTGGACGTT+TGG | + | tig0018169:9393-9412 | None:intergenic | 40.0% |
| AGAAGTTGTAGAATCCTTGG+TGG | + | tig0018169:9440-9459 | None:intergenic | 40.0% | |
| CTGAGAAGTTGTAGAATCCT+TGG | + | tig0018169:9443-9462 | None:intergenic | 40.0% | |
| ! | CTATTGGTCAAAAGGTGCAA+TGG | - | tig0018169:9576-9595 | Msa1364600:CDS | 40.0% |
| CAAATGCATACCTGAAAGAC+AGG | + | tig0018169:9667-9686 | None:intergenic | 40.0% | |
| ! | GTAATCCGATTGGCTAATAG+TGG | - | tig0018169:9902-9921 | Msa1364600:CDS | 40.0% |
| GATCACCACTATTAGCCAAT+CGG | + | tig0018169:9910-9929 | None:intergenic | 40.0% | |
| ATTGGCTAATAGTGGTGATC+TGG | - | tig0018169:9910-9929 | Msa1364600:intron | 40.0% | |
| !! | CAAAACTGACTTGTAAGGTG+AGG | - | tig0018169:10011-10030 | Msa1364600:intron | 40.0% |
| ! | TTTTCCCTCCTCATCTTATG+CGG | - | tig0018169:10227-10246 | Msa1364600:intron | 40.0% |
| AGCCTCCTATTTCATAGGAA+CGG | + | tig0018169:10352-10371 | None:intergenic | 40.0% | |
| TTCCTATGAAATAGGAGGCT+CGG | - | tig0018169:10352-10371 | Msa1364600:CDS | 40.0% | |
| !! | GAACCGAACCTCTAAAACTA+TGG | + | tig0018169:10579-10598 | None:intergenic | 40.0% |
| CAAACAAGTCTTTGCCTCTA+AGG | + | tig0018169:10734-10753 | None:intergenic | 40.0% | |
| CAGTATAGCAGGTAGCAATA+TGG | + | tig0018169:10901-10920 | None:intergenic | 40.0% | |
| ! | CTGCAACCATGTTTTGCATT+CGG | + | tig0018169:11264-11283 | None:intergenic | 40.0% |
| GAATGCAAAACATGGTTGCA+GGG | - | tig0018169:11263-11282 | Msa1364600:intron | 40.0% | |
| AGGGAGAAAATGAGTTACAC+TGG | - | tig0018169:11282-11301 | Msa1364600:intron | 40.0% | |
| ACAAAGTCACAACCTGAAAG+GGG | + | tig0018169:11354-11373 | None:intergenic | 40.0% | |
| CAACAAAGTCACAACCTGAA+AGG | + | tig0018169:11356-11375 | None:intergenic | 40.0% | |
| CCATTTCAGCCATAAACATG+GGG | - | tig0018169:11398-11417 | Msa1364600:intron | 40.0% | |
| CATTTCAGCCATAAACATGG+GGG | - | tig0018169:11399-11418 | Msa1364600:intron | 40.0% | |
| TTTGAGAACCCCCATGTTTA+TGG | + | tig0018169:11410-11429 | None:intergenic | 40.0% | |
| AGACTTCAAGGAGACAATGA+AGG | + | tig0018169:11484-11503 | None:intergenic | 40.0% | |
| TGGAACCATTGTTCTTCAAG+AGG | - | tig0018169:11509-11528 | Msa1364600:intron | 40.0% | |
| ! | GCAGTCAATATTTGCTGCAT+TGG | - | tig0018169:11585-11604 | Msa1364600:intron | 40.0% |
| AGAGGTTCAGAAGAACGAAA+TGG | + | tig0018169:11747-11766 | None:intergenic | 40.0% | |
| !! | ATGCAAATTTCTAGCTGGAG+AGG | + | tig0018169:11765-11784 | None:intergenic | 40.0% |
| !! | GGGTTATGCAAATTTCTAGC+TGG | + | tig0018169:11770-11789 | None:intergenic | 40.0% |
| AGAAATTTGCATAACCCCCA+TGG | - | tig0018169:11773-11792 | Msa1364600:intron | 40.0% | |
| AGCAAAGAAAAGGAGATAGG+CGG | + | tig0018169:11801-11820 | None:intergenic | 40.0% | |
| ! | TTTTGACAAGACACAGTACC+AGG | - | tig0018169:12234-12253 | Msa1364600:intron | 40.0% |
| ATGCAACGTCTGATCTTTGA+TGG | - | tig0018169:12262-12281 | Msa1364600:intron | 40.0% | |
| CTTGGATGTTGTAATTGGCA+AGG | + | tig0018169:12312-12331 | None:intergenic | 40.0% | |
| ! | TTTAGTAATCGGTGATGGTG+CGG | + | tig0018169:12386-12405 | None:intergenic | 40.0% |
| CGATTACTAAATCCAAGAGC+AGG | - | tig0018169:12395-12414 | Msa1364600:CDS | 40.0% | |
| TTCATGATAAGGGTTGCCAA+CGG | + | tig0018169:12446-12465 | None:intergenic | 40.0% | |
| GGCGATTGTCTTCATGATAA+GGG | + | tig0018169:12456-12475 | None:intergenic | 40.0% | |
| ATCAACACATCAAGCCACCA+AGG | - | tig0018169:9423-9442 | Msa1364600:CDS | 45.0% | |
| CATCTTGAGCGTAATCCGAT+TGG | - | tig0018169:9892-9911 | Msa1364600:CDS | 45.0% | |
| AATAGTGGTGATCTGGTAGC+AGG | - | tig0018169:9917-9936 | Msa1364600:intron | 45.0% | |
| TAAGCCGCATAAGATGAGGA+GGG | + | tig0018169:10234-10253 | None:intergenic | 45.0% | |
| CTACTAAGCCGCATAAGATG+AGG | + | tig0018169:10238-10257 | None:intergenic | 45.0% | |
| CTCATCTTATGCGGCTTAGT+AGG | - | tig0018169:10236-10255 | Msa1364600:intron | 45.0% | |
| GTGTCTCTATAGGGACATCT+TGG | + | tig0018169:10282-10301 | None:intergenic | 45.0% | |
| AACCGAGCCTCCTATTTCAT+AGG | + | tig0018169:10357-10376 | None:intergenic | 45.0% | |
| !!! | GGCCCATAGTTTTAGAGGTT+CGG | - | tig0018169:10573-10592 | Msa1364600:CDS | 45.0% |
| TAGACATCATTTGTCAGGGC+CGG | + | tig0018169:10629-10648 | None:intergenic | 45.0% | |
| CTACCTGCTGTCCTAAACTT+AGG | - | tig0018169:11151-11170 | Msa1364600:intron | 45.0% | |
| ! | GTTCCTAAGTTTAGGACAGC+AGG | + | tig0018169:11157-11176 | None:intergenic | 45.0% |
| ! | CCATGTTTTGCATTCGGACA+TGG | + | tig0018169:11258-11277 | None:intergenic | 45.0% |
| CCATGTCCGAATGCAAAACA+TGG | - | tig0018169:11255-11274 | Msa1364600:intron | 45.0% | |
| CGAATGCAAAACATGGTTGC+AGG | - | tig0018169:11262-11281 | Msa1364600:intron | 45.0% | |
| CCCCATGTTTATGGCTGAAA+TGG | + | tig0018169:11401-11420 | None:intergenic | 45.0% | |
| GTCTCCTTGAAGTCTAATGG+TGG | - | tig0018169:11489-11508 | Msa1364600:intron | 45.0% | |
| GGTTCCACCATTAGACTTCA+AGG | + | tig0018169:11496-11515 | None:intergenic | 45.0% | |
| ! | TGCATTGGTCCTAACTCTTC+TGG | - | tig0018169:11600-11619 | Msa1364600:intron | 45.0% |
| ! | GCATTGGTCCTAACTCTTCT+GGG | - | tig0018169:11601-11620 | Msa1364600:intron | 45.0% |
| TCTACATAATCACCCCGACT+AGG | - | tig0018169:12152-12171 | Msa1364600:intron | 45.0% | |
| TCTGAACTCTTAACCCTCAG+GGG | + | tig0018169:12187-12206 | None:intergenic | 45.0% | |
| GTCTGAACTCTTAACCCTCA+GGG | + | tig0018169:12188-12207 | None:intergenic | 45.0% | |
| TGTCTGAACTCTTAACCCTC+AGG | + | tig0018169:12189-12208 | None:intergenic | 45.0% | |
| AGACACAGTAGCCAATGTGA+AGG | - | tig0018169:12204-12223 | Msa1364600:intron | 45.0% | |
| TGTTGTAATTGGCAAGGGTC+AGG | + | tig0018169:12306-12325 | None:intergenic | 45.0% | |
| GGGCGATTGTCTTCATGATA+AGG | + | tig0018169:12457-12476 | None:intergenic | 45.0% | |
| GTTGTGCGCGAAGTGTATAG+CGG | + | tig0018169:9822-9841 | None:intergenic | 50.0% | |
| GCGCACAACGTGAAACACAA+GGG | - | tig0018169:9833-9852 | Msa1364600:CDS | 50.0% | |
| CGGATTACGCTCAAGATGTC+CGG | + | tig0018169:9890-9909 | None:intergenic | 50.0% | |
| !!! | GGTGGCCCAACGGATTTTTT+TGG | - | tig0018169:9938-9957 | Msa1364600:intron | 50.0% |
| CTAAGCCGCATAAGATGAGG+AGG | + | tig0018169:10235-10254 | None:intergenic | 50.0% | |
| CAGGGCCGTTCCTATGAAAT+AGG | - | tig0018169:10344-10363 | Msa1364600:CDS | 50.0% | |
| GGCCGTTCCTATGAAATAGG+AGG | - | tig0018169:10347-10366 | Msa1364600:CDS | 50.0% | |
| CCTGAAAGGGGACAGTAACA+TGG | + | tig0018169:11342-11361 | None:intergenic | 50.0% | |
| CCATGTTACTGTCCCCTTTC+AGG | - | tig0018169:11339-11358 | Msa1364600:intron | 50.0% | |
| TACTCGGACCCAGAAGAGTT+AGG | + | tig0018169:11612-11631 | None:intergenic | 50.0% | |
| AAGGAGATAGGCGGTACCAT+GGG | + | tig0018169:11792-11811 | None:intergenic | 50.0% | |
| AAAGGAGATAGGCGGTACCA+TGG | + | tig0018169:11793-11812 | None:intergenic | 50.0% | |
| AGGGGGATCATCTTCCTAGT+CGG | + | tig0018169:12169-12188 | None:intergenic | 50.0% | |
| TAGGAAGATGATCCCCCTGA+GGG | - | tig0018169:12171-12190 | Msa1364600:intron | 50.0% | |
| CTGAACTCTTAACCCTCAGG+GGG | + | tig0018169:12186-12205 | None:intergenic | 50.0% | |
| TCATCTAGTCCCCAATGAGG+CGG | + | tig0018169:12360-12379 | None:intergenic | 50.0% | |
| TGGTCATCTAGTCCCCAATG+AGG | + | tig0018169:12363-12382 | None:intergenic | 50.0% | |
| ATGATAAGGGTTGCCAACGG+CGG | + | tig0018169:12443-12462 | None:intergenic | 50.0% | |
| GAAGACAATCGCCCTATGAG+TGG | - | tig0018169:12463-12482 | Msa1364600:intron | 50.0% | |
| CGCGCACAACGTGAAACACA+AGG | - | tig0018169:9832-9851 | Msa1364600:CDS | 55.0% | |
| AGATGTCCGGTTCTCGACGT+GGG | + | tig0018169:9877-9896 | None:intergenic | 55.0% | |
| AAGATGTCCGGTTCTCGACG+TGG | + | tig0018169:9878-9897 | None:intergenic | 55.0% | |
| AGTGGTGATCTGGTAGCAGG+TGG | - | tig0018169:9920-9939 | Msa1364600:intron | 55.0% | |
| ATTTGTCAGGGCCGGACCTT+GGG | + | tig0018169:10621-10640 | None:intergenic | 55.0% | |
| AGGAGATAGGCGGTACCATG+GGG | + | tig0018169:11791-11810 | None:intergenic | 55.0% | |
| GGGGATCATCTTCCTAGTCG+GGG | + | tig0018169:12167-12186 | None:intergenic | 55.0% | |
| GGGGGATCATCTTCCTAGTC+GGG | + | tig0018169:12168-12187 | None:intergenic | 55.0% | |
| CTAGGAAGATGATCCCCCTG+AGG | - | tig0018169:12170-12189 | Msa1364600:intron | 55.0% | |
| TCAGACGTTGCATGTGCACC+TGG | + | tig0018169:12255-12274 | None:intergenic | 55.0% | |
| ! | GGTGGAGGGTTGACTTCTCT+TGG | + | tig0018169:12330-12349 | None:intergenic | 55.0% |
| ! | AGTAATCGGTGATGGTGCGG+TGG | + | tig0018169:12383-12402 | None:intergenic | 55.0% |
| GGTGGATGATTGCCTGCTCT+TGG | + | tig0018169:12410-12429 | None:intergenic | 55.0% | |
| AACGGCGGCAGATGATAAGG+TGG | + | tig0018169:12428-12447 | None:intergenic | 55.0% | |
| ACCTTATCATCTGCCGCCGT+TGG | - | tig0018169:12427-12446 | Msa1364600:CDS | 55.0% | |
| CACAACCCCACGTCGAGAAC+CGG | - | tig0018169:9868-9887 | Msa1364600:CDS | 60.0% | |
| GATGTCCGGTTCTCGACGTG+GGG | + | tig0018169:9876-9895 | None:intergenic | 60.0% | |
| TCTGGTAGCAGGTGGCCCAA+CGG | - | tig0018169:9928-9947 | Msa1364600:intron | 60.0% | |
| TTCCTGCACTCCCCAAGGTC+CGG | - | tig0018169:10607-10626 | Msa1364600:CDS | 60.0% | |
| TTTGTCAGGGCCGGACCTTG+GGG | + | tig0018169:10620-10639 | None:intergenic | 60.0% | |
| CATTTGTCAGGGCCGGACCT+TGG | + | tig0018169:10622-10641 | None:intergenic | 60.0% | |
| GGAGATAGGCGGTACCATGG+GGG | + | tig0018169:11790-11809 | None:intergenic | 60.0% | |
| ACCTCGTCCTCCGCCTCATT+GGG | - | tig0018169:12347-12366 | Msa1364600:intron | 60.0% | |
| TCTAGTCCCCAATGAGGCGG+AGG | + | tig0018169:12357-12376 | None:intergenic | 60.0% | |
| GCCAACGGCGGCAGATGATA+AGG | + | tig0018169:12431-12450 | None:intergenic | 60.0% | |
| AGCGCTTCCTGCACTCCCCA+AGG | - | tig0018169:10602-10621 | Msa1364600:CDS | 65.0% | |
| CAATGAGGCGGAGGACGAGG+TGG | + | tig0018169:12348-12367 | None:intergenic | 65.0% | |
| CACCTCGTCCTCCGCCTCAT+TGG | - | tig0018169:12346-12365 | Msa1364600:intron | 65.0% | |
| CCTCGTCCTCCGCCTCATTG+GGG | - | tig0018169:12348-12367 | Msa1364600:intron | 65.0% | |
| GAGGCGGAGGACGAGGTGGA+GGG | + | tig0018169:12344-12363 | None:intergenic | 70.0% | |
| TGAGGCGGAGGACGAGGTGG+AGG | + | tig0018169:12345-12364 | None:intergenic | 70.0% | |
| CCCCAATGAGGCGGAGGACG+AGG | + | tig0018169:12351-12370 | None:intergenic | 70.0% | |
| ! | GGCCGGACCTTGGGGAGTGC+AGG | + | tig0018169:10612-10631 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018169 | gene | 9383 | 12684 | 9383 | ID=Msa1364600;Name=Msa1364600 |
| tig0018169 | mRNA | 9383 | 12684 | 9383 | ID=Msa1364600-mRNA-1;Parent=Msa1364600;Name=Msa1364600-mRNA-1;_AED=0.80;_eAED=0.80;_QI=84|0.25|0.4|0.4|0.75|0.6|5|0|389 |
| tig0018169 | exon | 9383 | 9691 | 9383 | ID=Msa1364600-mRNA-1:exon:14083;Parent=Msa1364600-mRNA-1 |
| tig0018169 | exon | 9812 | 9922 | 9812 | ID=Msa1364600-mRNA-1:exon:14082;Parent=Msa1364600-mRNA-1 |
| tig0018169 | exon | 10273 | 10941 | 10273 | ID=Msa1364600-mRNA-1:exon:14081;Parent=Msa1364600-mRNA-1 |
| tig0018169 | exon | 12392 | 12477 | 12392 | ID=Msa1364600-mRNA-1:exon:14080;Parent=Msa1364600-mRNA-1 |
| tig0018169 | exon | 12606 | 12684 | 12606 | ID=Msa1364600-mRNA-1:exon:14079;Parent=Msa1364600-mRNA-1 |
| tig0018169 | five_prime_UTR | 12606 | 12684 | 12606 | ID=Msa1364600-mRNA-1:five_prime_utr;Parent=Msa1364600-mRNA-1 |
| tig0018169 | five_prime_UTR | 12473 | 12477 | 12473 | ID=Msa1364600-mRNA-1:five_prime_utr;Parent=Msa1364600-mRNA-1 |
| tig0018169 | CDS | 12392 | 12472 | 12392 | ID=Msa1364600-mRNA-1:cds;Parent=Msa1364600-mRNA-1 |
| tig0018169 | CDS | 10273 | 10941 | 10273 | ID=Msa1364600-mRNA-1:cds;Parent=Msa1364600-mRNA-1 |
| tig0018169 | CDS | 9812 | 9922 | 9812 | ID=Msa1364600-mRNA-1:cds;Parent=Msa1364600-mRNA-1 |
| tig0018169 | CDS | 9383 | 9691 | 9383 | ID=Msa1364600-mRNA-1:cds;Parent=Msa1364600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
