Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011570 | XP_024627046.1 | 85.813 | 289 | 30 | 2 | 1 | 288 | 1 | 279 | 2.84e-173 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011570 | sp|Q84K34|SIL10_ARATH | 35.484 | 248 | 146 | 3 | 4 | 247 | 103 | 340 | 2.89e-43 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011570 | G7KWT8 | 85.813 | 289 | 30 | 2 | 1 | 288 | 1 | 279 | 1.36e-173 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1011570 | Msa1011580 | 0.854384 | 1.275573e-61 | -8.615850e-47 |
| Msa1011570 | Msa1142690 | 0.853493 | 2.304324e-61 | -8.615850e-47 |
| Msa1011570 | Msa1364600 | 0.838557 | 2.678801e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011570 | MtrunA17_Chr7g0223111 | 85.813 | 289 | 30 | 2 | 1 | 288 | 27 | 305 | 2.92e-177 | 502 |
| Msa1011570 | MtrunA17_Chr5g0428191 | 76.325 | 283 | 57 | 1 | 1 | 283 | 1 | 273 | 4.41e-153 | 439 |
| Msa1011570 | MtrunA17_Chr5g0433661 | 71.731 | 283 | 67 | 2 | 3 | 282 | 37 | 309 | 6.18e-138 | 402 |
| Msa1011570 | MtrunA17_Chr1g0169371 | 75.391 | 256 | 52 | 2 | 28 | 283 | 3 | 247 | 8.05e-131 | 382 |
| Msa1011570 | MtrunA17_Chr7g0259431 | 72.093 | 258 | 62 | 1 | 25 | 282 | 7 | 254 | 9.32e-126 | 369 |
| Msa1011570 | MtrunA17_Chr5g0433731 | 71.642 | 268 | 61 | 4 | 26 | 289 | 8 | 264 | 9.29e-125 | 365 |
| Msa1011570 | MtrunA17_Chr5g0433631 | 67.719 | 285 | 79 | 2 | 4 | 285 | 26 | 300 | 1.20e-124 | 368 |
| Msa1011570 | MtrunA17_Chr5g0424971 | 64.261 | 291 | 86 | 4 | 4 | 288 | 11 | 289 | 9.32e-124 | 365 |
| Msa1011570 | MtrunA17_Chr5g0433531 | 67.247 | 287 | 80 | 3 | 1 | 283 | 1 | 277 | 9.85e-123 | 362 |
| Msa1011570 | MtrunA17_Chr5g0433721 | 77.021 | 235 | 44 | 1 | 49 | 283 | 2 | 226 | 5.22e-122 | 358 |
| Msa1011570 | MtrunA17_Chr5g0433411 | 64.789 | 284 | 86 | 3 | 4 | 283 | 26 | 299 | 2.29e-119 | 355 |
| Msa1011570 | MtrunA17_Chr2g0298951 | 59.000 | 300 | 100 | 3 | 27 | 313 | 9 | 298 | 6.41e-113 | 337 |
| Msa1011570 | MtrunA17_Chr5g0433521 | 66.794 | 262 | 74 | 2 | 27 | 285 | 23 | 274 | 1.17e-112 | 337 |
| Msa1011570 | MtrunA17_Chr5g0433541 | 70.168 | 238 | 61 | 1 | 1 | 238 | 1 | 228 | 1.20e-108 | 323 |
| Msa1011570 | MtrunA17_Chr5g0433551 | 70.168 | 238 | 61 | 1 | 1 | 238 | 1 | 228 | 1.20e-108 | 323 |
| Msa1011570 | MtrunA17_Chr2g0298941 | 63.514 | 222 | 66 | 3 | 70 | 286 | 1 | 212 | 2.71e-88 | 271 |
| Msa1011570 | MtrunA17_Chr5g0433881 | 60.630 | 254 | 64 | 7 | 53 | 285 | 17 | 255 | 2.16e-85 | 266 |
| Msa1011570 | MtrunA17_Chr1g0169381 | 74.096 | 166 | 32 | 2 | 1 | 166 | 1 | 155 | 3.05e-81 | 250 |
| Msa1011570 | MtrunA17_Chr4g0028681 | 72.667 | 150 | 30 | 2 | 68 | 216 | 1 | 140 | 5.57e-64 | 204 |
| Msa1011570 | MtrunA17_Chr4g0051351 | 45.415 | 229 | 114 | 3 | 6 | 234 | 92 | 309 | 2.83e-61 | 204 |
| Msa1011570 | MtrunA17_Chr3g0083571 | 26.432 | 227 | 147 | 7 | 5 | 220 | 45 | 262 | 3.55e-19 | 88.2 |
| Msa1011570 | MtrunA17_Chr8g0352701 | 27.727 | 220 | 141 | 6 | 10 | 220 | 52 | 262 | 7.82e-19 | 87.4 |
| Msa1011570 | MtrunA17_Chr8g0346801 | 25.368 | 272 | 176 | 6 | 3 | 267 | 36 | 287 | 8.39e-19 | 87.4 |
| Msa1011570 | MtrunA17_Chr7g0275701 | 36.000 | 125 | 78 | 1 | 3 | 125 | 53 | 177 | 1.10e-17 | 84.3 |
| Msa1011570 | MtrunA17_Chr3g0126851 | 36.752 | 117 | 72 | 1 | 10 | 124 | 59 | 175 | 1.57e-17 | 84.0 |
| Msa1011570 | MtrunA17_Chr7g0253271 | 25.221 | 226 | 144 | 4 | 27 | 248 | 3 | 207 | 1.30e-16 | 79.0 |
| Msa1011570 | MtrunA17_Chr1g0147041 | 35.897 | 117 | 73 | 1 | 10 | 124 | 67 | 183 | 1.89e-16 | 80.5 |
| Msa1011570 | MtrunA17_Chr1g0175721 | 26.484 | 219 | 143 | 6 | 11 | 220 | 58 | 267 | 3.37e-16 | 79.7 |
| Msa1011570 | MtrunA17_Chr7g0258941 | 26.027 | 219 | 144 | 6 | 11 | 220 | 59 | 268 | 2.28e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011570 | AT5G37930.1 | 35.484 | 248 | 146 | 3 | 4 | 247 | 103 | 340 | 2.94e-44 | 160 |
| Msa1011570 | AT5G37870.1 | 31.890 | 254 | 158 | 6 | 6 | 253 | 37 | 281 | 2.66e-36 | 136 |
| Msa1011570 | AT1G66620.1 | 33.068 | 251 | 149 | 5 | 5 | 247 | 35 | 274 | 6.67e-36 | 136 |
| Msa1011570 | AT5G37890.1 | 33.047 | 233 | 134 | 4 | 10 | 234 | 47 | 265 | 1.88e-35 | 134 |
| Msa1011570 | AT1G66660.2 | 32.283 | 254 | 158 | 6 | 2 | 248 | 94 | 340 | 2.61e-35 | 135 |
| Msa1011570 | AT1G66630.1 | 31.061 | 264 | 154 | 6 | 5 | 247 | 40 | 296 | 1.13e-33 | 130 |
| Msa1011570 | AT1G66650.1 | 31.873 | 251 | 158 | 6 | 4 | 247 | 76 | 320 | 1.25e-33 | 130 |
| Msa1011570 | AT5G37910.1 | 29.412 | 255 | 166 | 4 | 4 | 256 | 28 | 270 | 3.36e-30 | 119 |
| Msa1011570 | AT5G62800.1 | 31.034 | 261 | 165 | 7 | 11 | 264 | 40 | 292 | 1.23e-28 | 117 |
| Msa1011570 | AT5G62800.2 | 35.567 | 194 | 113 | 5 | 11 | 200 | 40 | 225 | 9.30e-28 | 113 |
| Msa1011570 | AT1G66660.1 | 28.638 | 213 | 136 | 8 | 43 | 248 | 13 | 216 | 4.84e-18 | 83.6 |
| Msa1011570 | AT3G61790.1 | 35.484 | 124 | 78 | 1 | 3 | 124 | 52 | 175 | 6.56e-18 | 85.5 |
| Msa1011570 | AT3G58040.1 | 25.322 | 233 | 159 | 6 | 10 | 234 | 56 | 281 | 6.47e-17 | 82.0 |
| Msa1011570 | AT3G58040.3 | 25.322 | 233 | 159 | 6 | 10 | 234 | 56 | 281 | 6.47e-17 | 82.0 |
| Msa1011570 | AT4G27880.1 | 33.588 | 131 | 80 | 2 | 10 | 133 | 60 | 190 | 1.61e-16 | 81.3 |
| Msa1011570 | AT2G41980.1 | 25.098 | 255 | 166 | 8 | 10 | 248 | 53 | 298 | 7.32e-16 | 79.0 |
| Msa1011570 | AT3G58040.2 | 36.082 | 97 | 62 | 0 | 10 | 106 | 56 | 152 | 2.06e-15 | 75.9 |
| Msa1011570 | AT1G66610.2 | 48.611 | 72 | 37 | 0 | 5 | 76 | 152 | 223 | 2.51e-14 | 73.2 |
| Msa1011570 | AT1G66610.2 | 44.928 | 69 | 38 | 0 | 5 | 73 | 47 | 115 | 5.02e-12 | 66.2 |
| Msa1011570 | AT1G66610.1 | 44.928 | 69 | 38 | 0 | 5 | 73 | 47 | 115 | 2.78e-12 | 68.9 |
| Msa1011570 | AT1G66610.1 | 27.439 | 164 | 102 | 5 | 76 | 234 | 183 | 334 | 2.51e-11 | 65.9 |
| Msa1011570 | AT5G37900.1 | 26.000 | 250 | 139 | 7 | 5 | 248 | 26 | 235 | 3.39e-12 | 67.0 |
Find 120 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTGGTCCTAACTCTTC+TGG | 0.129441 | 7_1:-16061725 | Msa1011570:CDS |
| TTTGAGAATCCCCATGTTTA+TGG | 0.139160 | 7_1:+16061918 | None:intergenic |
| CCATGTTACTGTCCCCTTTC+AGG | 0.141370 | 7_1:-16061986 | Msa1011570:CDS |
| TCTAAGTATTCCTGTCTTTC+AGG | 0.178018 | 7_1:-16063669 | Msa1011570:intron |
| AGTAATTTGTATTCTTATTA+AGG | 0.178934 | 7_1:-16060792 | Msa1011570:CDS |
| CAATAATGCTACTATGAGTT+TGG | 0.241803 | 7_1:-16061768 | Msa1011570:CDS |
| TTAGAAACTAAGCAACTAAA+AGG | 0.250761 | 7_1:+16059559 | None:intergenic |
| AAAAGCAGCAAAAGAGGTTC+TGG | 0.297468 | 7_1:+16059624 | None:intergenic |
| GATAGTATATATGTTGAAAA+AGG | 0.305633 | 7_1:-16060702 | Msa1011570:CDS |
| TGTATTATTTCTCCACTCAT+AGG | 0.323218 | 7_1:+16060848 | None:intergenic |
| CACGGGCCGTGCCAAGCTTC+TGG | 0.328646 | 7_1:+16059675 | None:intergenic |
| TGGAGTTCATGGTGACATTC+TGG | 0.338071 | 7_1:-16060452 | Msa1011570:CDS |
| AAATGAGTTACACTGGAAAT+AGG | 0.344851 | 7_1:-16062036 | Msa1011570:CDS |
| CTGCTCTTGGATTTAGTAAT+CGG | 0.345058 | 7_1:+16060929 | None:intergenic |
| TGACACTTGTTCCTAAGTTT+AGG | 0.348740 | 7_1:+16062163 | None:intergenic |
| AGAAGAAACTTTGAGAAAAC+AGG | 0.368086 | 7_1:-16060541 | Msa1011570:CDS |
| GTCAAATCCTTAATAAGAAA+TGG | 0.375266 | 7_1:+16060758 | None:intergenic |
| TGAGTATAGTTATGATATAT+TGG | 0.388650 | 7_1:-16061699 | Msa1011570:CDS |
| ATTGTCTCCTTGAAGTCTAA+TGG | 0.388929 | 7_1:-16061839 | Msa1011570:CDS |
| CGAATGCAAAACATGGTTGC+AGG | 0.390717 | 7_1:-16062063 | Msa1011570:CDS |
| GGTGGATGATTGCCTGCTCT+TGG | 0.401055 | 7_1:+16060916 | None:intergenic |
| GCATTGGTCCTAACTCTTCT+GGG | 0.401380 | 7_1:-16061724 | Msa1011570:CDS |
| TAAAACAGTAAAGCTGCAAC+AGG | 0.406325 | 7_1:+16059583 | None:intergenic |
| GTGGCACGTTTGCTTAAACT+TGG | 0.413585 | 7_1:+16060508 | None:intergenic |
| AAACGTGCCACGTTGGTAAC+TGG | 0.413631 | 7_1:-16060496 | Msa1011570:CDS |
| CCCCATGTTTATGGATGAAA+TGG | 0.416553 | 7_1:+16061927 | None:intergenic |
| GGGCGATTGTCTTCATGATA+AGG | 0.417684 | 7_1:+16060869 | None:intergenic |
| AATAATGCTACTATGAGTTT+GGG | 0.418649 | 7_1:-16061767 | Msa1011570:CDS |
| AAAGCTGCAACAGGGTAACT+TGG | 0.424488 | 7_1:+16059592 | None:intergenic |
| GGCGATTGTCTTCATGATAA+GGG | 0.428503 | 7_1:+16060870 | None:intergenic |
| TCGTATAGTTGGTGGACGTT+TGG | 0.433934 | 7_1:+16063934 | None:intergenic |
| GCAGTCAATATTTGCTGCAT+TGG | 0.437797 | 7_1:-16061740 | Msa1011570:CDS |
| AAAACGCAACGTGCCACAAT+TGG | 0.438594 | 7_1:-16060410 | Msa1011570:CDS |
| TGGCACGTTTGCTTAAACTT+GGG | 0.440453 | 7_1:+16060509 | None:intergenic |
| GCAAAAGAGGTTCTGGGGAC+GGG | 0.450202 | 7_1:+16059631 | None:intergenic |
| AACAAAGTCACAACCTGAAA+GGG | 0.450677 | 7_1:+16061973 | None:intergenic |
| GGTTCCACCATTAGACTTCA+AGG | 0.451128 | 7_1:+16061832 | None:intergenic |
| CCGTGCCAAGCTTCTGGTAA+GGG | 0.456771 | 7_1:+16059681 | None:intergenic |
| GCCAACGGCGGCAGATGATA+AGG | 0.458844 | 7_1:+16060895 | None:intergenic |
| GCCGTGCCAAGCTTCTGGTA+AGG | 0.461061 | 7_1:+16059680 | None:intergenic |
| AGAGGTTCAGAAGAACGAAA+TGG | 0.462744 | 7_1:+16061581 | None:intergenic |
| GGCCGTGCCACATGTTGGCA+CGG | 0.463693 | 7_1:+16059657 | None:intergenic |
| GTTGTAATTCAGTGTGATAA+TGG | 0.467413 | 7_1:-16062211 | Msa1011570:intron |
| GTATTATTTCTCCACTCATA+GGG | 0.469230 | 7_1:+16060849 | None:intergenic |
| TGAAAGACAGGAATACTTAG+AGG | 0.482175 | 7_1:+16063671 | None:intergenic |
| TGTCTGAACTCTTAACCCTC+AGG | 0.482923 | 7_1:+16061137 | None:intergenic |
| ATATATGGTGGAAGGTGCCT+TGG | 0.485663 | 7_1:-16059774 | Msa1011570:CDS |
| GTGACATTCTGGAACTTTCG+TGG | 0.487562 | 7_1:-16060441 | Msa1011570:CDS |
| TACTCAGACCCAGAAGAGTT+AGG | 0.488901 | 7_1:+16061716 | None:intergenic |
| TTGGTCTTTCGTATAGTTGG+TGG | 0.492622 | 7_1:+16063926 | None:intergenic |
| TTGAAACGATGTGGAGTTCA+TGG | 0.497836 | 7_1:-16060463 | Msa1011570:CDS |
| ACCTTATCATCTGCCGCCGT+TGG | 0.498696 | 7_1:-16060896 | Msa1011570:CDS |
| AAAGCAGCAAAAGAGGTTCT+GGG | 0.499229 | 7_1:+16059625 | None:intergenic |
| AGAGGTTCTGGGGACGGGCA+CGG | 0.499696 | 7_1:+16059636 | None:intergenic |
| GTTCCTAAGTTTAGGACAGC+AGG | 0.503985 | 7_1:+16062171 | None:intergenic |
| CTACCTGCTGTCCTAAACTT+AGG | 0.504618 | 7_1:-16062174 | Msa1011570:CDS |
| CTGAGAAGTAGTAGAATCCT+TGG | 0.504857 | 7_1:+16063884 | None:intergenic |
| CAAATGCATACCTGAAAGAC+AGG | 0.508688 | 7_1:+16063659 | None:intergenic |
| AGGAATAAATATATGGTGGA+AGG | 0.517321 | 7_1:-16059782 | Msa1011570:CDS |
| AGCGCAAGAATACGAAGATA+CGG | 0.521334 | 7_1:-16059721 | Msa1011570:CDS |
| GCCACGTTGGTAACTGGTCG+TGG | 0.525802 | 7_1:-16060490 | Msa1011570:CDS |
| ATCTCCCCTTACCAGAAGCT+TGG | 0.526073 | 7_1:-16059686 | Msa1011570:CDS |
| AGCAAAAGAGGTTCTGGGGA+CGG | 0.533857 | 7_1:+16059630 | None:intergenic |
| GTCTGAACTCTTAACCCTCA+GGG | 0.537566 | 7_1:+16061138 | None:intergenic |
| TAGAAACTAAGCAACTAAAA+GGG | 0.539326 | 7_1:+16059560 | None:intergenic |
| CAACAAAGTCACAACCTGAA+AGG | 0.540955 | 7_1:+16061972 | None:intergenic |
| ATGCAAATTTCAAGCTTGAG+AGG | 0.550587 | 7_1:+16061563 | None:intergenic |
| GCACGGCCCGTGCCAACATG+TGG | 0.553838 | 7_1:-16059664 | Msa1011570:CDS |
| CTGTTAGTCAAAAGGTGCAA+TGG | 0.555162 | 7_1:-16063747 | Msa1011570:intron |
| GCGCAAGAATACGAAGATAC+GGG | 0.559144 | 7_1:-16059720 | Msa1011570:CDS |
| TGCCTTGGAGCAAAAGAAAG+AGG | 0.569274 | 7_1:-16059759 | Msa1011570:CDS |
| TTGGATTTAGTAATCGGTGA+TGG | 0.570506 | 7_1:+16060935 | None:intergenic |
| ACCATTTCATCCATAAACAT+GGG | 0.570682 | 7_1:-16061928 | Msa1011570:CDS |
| CGTGCCAAGCTTCTGGTAAG+GGG | 0.571333 | 7_1:+16059682 | None:intergenic |
| GCCCGTGCCAACATGTGGCA+CGG | 0.574074 | 7_1:-16059659 | Msa1011570:CDS |
| GGCACGGCCGTGCCACATGT+TGG | 0.579171 | 7_1:+16059652 | None:intergenic |
| AACCATTTCATCCATAAACA+TGG | 0.580108 | 7_1:-16061929 | Msa1011570:CDS |
| GCCGTGCCACATGTTGGCAC+GGG | 0.580157 | 7_1:+16059658 | None:intergenic |
| CGATTACTAAATCCAAGAGC+AGG | 0.580228 | 7_1:-16060928 | Msa1011570:CDS |
| GCAAGTTCATCAACCAATTG+TGG | 0.581236 | 7_1:+16060397 | None:intergenic |
| AAGCTGCAACAGGGTAACTT+GGG | 0.587165 | 7_1:+16059593 | None:intergenic |
| TGGAGCAAAAGAAAGAGGAC+TGG | 0.595662 | 7_1:-16059754 | Msa1011570:CDS |
| TGGAACCATTGTTCTTCAAG+AGG | 0.598400 | 7_1:-16061816 | Msa1011570:CDS |
| GAAGACAATCGCCCTATGAG+TGG | 0.598862 | 7_1:-16060860 | Msa1011570:CDS |
| CCTGAAAGGGGACAGTAACA+TGG | 0.599066 | 7_1:+16061986 | None:intergenic |
| ACTTTGAGAATTGAACAAGA+AGG | 0.601256 | 7_1:-16060737 | Msa1011570:CDS |
| ATGTTTATGGATGAAATGGT+TGG | 0.604696 | 7_1:+16061931 | None:intergenic |
| TTAGAGTTTGAAATCGTCAG+AGG | 0.607477 | 7_1:+16063722 | None:intergenic |
| AGACTTCAAGGAGACAATGA+AGG | 0.608582 | 7_1:+16061844 | None:intergenic |
| TCTACATAATCACCCCGACT+AGG | 0.616280 | 7_1:-16061171 | Msa1011570:CDS |
| GAGTTGCTAAAGTAAACTGT+TGG | 0.616702 | 7_1:+16061627 | None:intergenic |
| TGATGATGGCATATTGATGA+TGG | 0.617033 | 7_1:-16060675 | Msa1011570:intron |
| CCCTTACCAGAAGCTTGGCA+CGG | 0.617899 | 7_1:-16059681 | Msa1011570:CDS |
| GTTCTTCAAGAGGAAAATGA+CGG | 0.617899 | 7_1:-16061806 | Msa1011570:CDS |
| GTCTCCTTGAAGTCTAATGG+TGG | 0.621511 | 7_1:-16061836 | Msa1011570:CDS |
| GAATGCAAAACATGGTTGCA+GGG | 0.629567 | 7_1:-16062062 | Msa1011570:CDS |
| AGTAATCGGTGATGGTGCGG+TGG | 0.630096 | 7_1:+16060943 | None:intergenic |
| CCATTTCATCCATAAACATG+GGG | 0.635157 | 7_1:-16061927 | Msa1011570:CDS |
| ATCAACACATCAAGCCACCA+AGG | 0.636355 | 7_1:-16063901 | Msa1011570:five_prime_UTR |
| AGGGAGAAAATGAGTTACAC+TGG | 0.636460 | 7_1:-16062043 | Msa1011570:CDS |
| CCATGTCCGAATGCAAAACA+TGG | 0.639006 | 7_1:-16062070 | Msa1011570:CDS |
| ACAAAGTCACAACCTGAAAG+GGG | 0.645303 | 7_1:+16061974 | None:intergenic |
| ATGATAAGGGTTGCCAACGG+CGG | 0.650531 | 7_1:+16060883 | None:intergenic |
| TTCATGATAAGGGTTGCCAA+CGG | 0.655727 | 7_1:+16060880 | None:intergenic |
| CTGGAACTTTCGTGGCACGA+AGG | 0.657120 | 7_1:-16060433 | Msa1011570:CDS |
| CGCAAGAATACGAAGATACG+GGG | 0.662121 | 7_1:-16059719 | Msa1011570:CDS |
| CTGAACTCTTAACCCTCAGG+GGG | 0.662405 | 7_1:+16061140 | None:intergenic |
| AACGGCGGCAGATGATAAGG+TGG | 0.663201 | 7_1:+16060898 | None:intergenic |
| AAGCAGCAAAAGAGGTTCTG+GGG | 0.664675 | 7_1:+16059626 | None:intergenic |
| AGAAGTAGTAGAATCCTTGG+TGG | 0.664694 | 7_1:+16063887 | None:intergenic |
| TTTAAGCAAACGTGCCACGT+TGG | 0.665672 | 7_1:-16060503 | Msa1011570:CDS |
| GGGGATCATCTTCCTAGTCG+GGG | 0.667464 | 7_1:+16061159 | None:intergenic |
| AGACACAGTAGCCAATGTGA+AGG | 0.670298 | 7_1:-16061119 | Msa1011570:CDS |
| TTTAGTAATCGGTGATGGTG+CGG | 0.670627 | 7_1:+16060940 | None:intergenic |
| TCTGAACTCTTAACCCTCAG+GGG | 0.679402 | 7_1:+16061139 | None:intergenic |
| CGTGGCACGTTGAAACGATG+TGG | 0.684338 | 7_1:-16060472 | Msa1011570:CDS |
| AAGAACGAAATGGAATCACA+AGG | 0.699518 | 7_1:+16061591 | None:intergenic |
| AAAACAGTAAAGCTGCAACA+GGG | 0.707997 | 7_1:+16059584 | None:intergenic |
| GGAGATAGGCGGTACCATGG+GGG | 0.718009 | 7_1:+16061538 | None:intergenic |
| GCCACGACCAGTTACCAACG+TGG | 0.760252 | 7_1:+16060489 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAGTATTATAATTTTTTTTA+AGG | - | chr7_1:16060741-16060760 | Msa1011570:CDS | 10.0% |
| !! | TCAAAAAAAAAAATTTCTTA+TGG | - | chr7_1:16061643-16061662 | Msa1011570:CDS | 10.0% |
| !!! | ATATTCTTTTATTGATTTAA+TGG | - | chr7_1:16062300-16062319 | Msa1011570:intron | 10.0% |
| !! | ATATTTATAGAAAGAAATTA+GGG | + | chr7_1:16063219-16063238 | None:intergenic | 10.0% |
| !! | AAATAAAACTAAACTAAATA+AGG | + | chr7_1:16063638-16063657 | None:intergenic | 10.0% |
| !!! | ATTGTGTTTTATTTTATTTT+AGG | - | chr7_1:16063713-16063732 | Msa1011570:CDS | 10.0% |
| !!! | TTATTTTAGGAATAAATATA+TGG | - | chr7_1:16063726-16063745 | Msa1011570:CDS | 10.0% |
| !! | TTGATTATATAAAGTTGTAA+TGG | - | chr7_1:16059734-16059753 | Msa1011570:CDS | 15.0% |
| !! | TAAATATGAGTATATAATTG+GGG | + | chr7_1:16060234-16060253 | None:intergenic | 15.0% |
| !! | CTAAATATGAGTATATAATT+GGG | + | chr7_1:16060235-16060254 | None:intergenic | 15.0% |
| !!! | AGAAACTATTTTATTTTGTT+AGG | + | chr7_1:16060709-16060728 | None:intergenic | 15.0% |
| !! | AATAAAATAGTTTCTTTCAA+TGG | - | chr7_1:16060714-16060733 | Msa1011570:CDS | 15.0% |
| !! | ATAAAATAGTTTCTTTCAAT+GGG | - | chr7_1:16060715-16060734 | Msa1011570:CDS | 15.0% |
| !! | AAAAAAAAAAAGCAAAGAAA+AGG | + | chr7_1:16062001-16062020 | None:intergenic | 15.0% |
| !! | GAAAATAATAAGACTTTAAT+TGG | + | chr7_1:16062028-16062047 | None:intergenic | 15.0% |
| !!! | AGTAATTTGTATTCTTATTA+AGG | - | chr7_1:16062723-16062742 | Msa1011570:intron | 15.0% |
| !!! | TTAGTTTTTTACTCATATTT+AGG | - | chr7_1:16062873-16062892 | Msa1011570:intron | 15.0% |
| !! | GATATTTATAGAAAGAAATT+AGG | + | chr7_1:16063220-16063239 | None:intergenic | 15.0% |
| !! | ATTTATATGCAATATGTTTC+TGG | - | chr7_1:16059925-16059944 | Msa1011570:intron | 20.0% |
| !! | ATAGATTCTGATAATATCTT+AGG | - | chr7_1:16060153-16060172 | Msa1011570:intron | 20.0% |
| !! | AAATATGAGTATATAATTGG+GGG | + | chr7_1:16060233-16060252 | None:intergenic | 20.0% |
| !! | CCTAAATATGAGTATATAAT+TGG | + | chr7_1:16060236-16060255 | None:intergenic | 20.0% |
| !! | CCAATTATATACTCATATTT+AGG | - | chr7_1:16060233-16060252 | Msa1011570:intron | 20.0% |
| !! | ATTAATTAGAAAATGCATGA+TGG | - | chr7_1:16060321-16060340 | Msa1011570:intron | 20.0% |
| !!! | ACTTGATTTTCTCAATTTAA+AGG | - | chr7_1:16060390-16060409 | Msa1011570:intron | 20.0% |
| !! | AATAAAATTAAGTGAAAGAG+AGG | - | chr7_1:16060674-16060693 | Msa1011570:intron | 20.0% |
| !! | TAAAATAGTTTCTTTCAATG+GGG | - | chr7_1:16060716-16060735 | Msa1011570:CDS | 20.0% |
| !! | TATAAAAGCTCAAAAATAGA+AGG | + | chr7_1:16061020-16061039 | None:intergenic | 20.0% |
| !!! | TCTATTTTTGAGCTTTTATA+TGG | - | chr7_1:16061020-16061039 | Msa1011570:intron | 20.0% |
| !!! | CTATTTTTGAGCTTTTATAT+GGG | - | chr7_1:16061021-16061040 | Msa1011570:intron | 20.0% |
| !! | AAAATCAATGTACTCAAAAA+CGG | + | chr7_1:16061142-16061161 | None:intergenic | 20.0% |
| !!! | TCTCAAATCAAATTTTCTTA+TGG | - | chr7_1:16061613-16061632 | Msa1011570:CDS | 20.0% |
| !! | TGAGTATAGTTATGATATAT+TGG | - | chr7_1:16061816-16061835 | Msa1011570:CDS | 20.0% |
| !!! | CTAACAAAACAACTTTATTT+TGG | + | chr7_1:16062110-16062129 | None:intergenic | 20.0% |
| !! | AAATTTATTACAGTACAACA+GGG | + | chr7_1:16062219-16062238 | None:intergenic | 20.0% |
| !! | AAAATTTATTACAGTACAAC+AGG | + | chr7_1:16062220-16062239 | None:intergenic | 20.0% |
| !!! | TTTTATTGATTTAATGGCAA+TGG | - | chr7_1:16062306-16062325 | Msa1011570:intron | 20.0% |
| !! | GATAGTATATATGTTGAAAA+AGG | - | chr7_1:16062813-16062832 | Msa1011570:intron | 20.0% |
| !! | ATATTACAATAGTTTCATCA+TGG | + | chr7_1:16063428-16063447 | None:intergenic | 20.0% |
| !!! | TTTTAGGAATAAATATATGG+TGG | - | chr7_1:16063729-16063748 | Msa1011570:CDS | 20.0% |
| ! | TTTAATCACTGTTAGTCAAA+AGG | - | chr7_1:16059760-16059779 | Msa1011570:CDS | 25.0% |
| ! | TAATAGGAAACAGAAAAGAA+TGG | - | chr7_1:16060441-16060460 | Msa1011570:CDS | 25.0% |
| !!! | AATTGTTTTGTGTCTCTATA+GGG | + | chr7_1:16060480-16060499 | None:intergenic | 25.0% |
| !!! | TAATTGTTTTGTGTCTCTAT+AGG | + | chr7_1:16060481-16060500 | None:intergenic | 25.0% |
| ! | TATAGAGACACAAAACAATT+AGG | - | chr7_1:16060480-16060499 | Msa1011570:CDS | 25.0% |
| ! | ATAGAGACACAAAACAATTA+GGG | - | chr7_1:16060481-16060500 | Msa1011570:CDS | 25.0% |
| !!! | CTCGGTTCTATTTTTAAAAT+AGG | - | chr7_1:16060559-16060578 | Msa1011570:CDS | 25.0% |
| !!! | ATTGCGTTTTGATTTTACTA+GGG | + | chr7_1:16060585-16060604 | None:intergenic | 25.0% |
| !!! | AATTGCGTTTTGATTTTACT+AGG | + | chr7_1:16060586-16060605 | None:intergenic | 25.0% |
| ! | AAAATAGTTTCTTTCAATGG+GGG | - | chr7_1:16060717-16060736 | Msa1011570:CDS | 25.0% |
| ! | AAAGTTTAGAGAAACAATAC+AGG | + | chr7_1:16061058-16061077 | None:intergenic | 25.0% |
| !! | TGTATTGTTTCTCTAAACTT+TGG | - | chr7_1:16061057-16061076 | Msa1011570:intron | 25.0% |
| !! | CTATACTGCTATAGTATTTT+GGG | - | chr7_1:16061103-16061122 | Msa1011570:CDS | 25.0% |
| !! | CTTTATTTGATTCTAGCAAA+TGG | - | chr7_1:16061250-16061269 | Msa1011570:intron | 25.0% |
| !!! | TGGTTCAAAGTTTAATTTGA+TGG | - | chr7_1:16061270-16061289 | Msa1011570:intron | 25.0% |
| ! | AATAATGCTACTATGAGTTT+GGG | - | chr7_1:16061748-16061767 | Msa1011570:CDS | 25.0% |
| !! | GCATTTTATCTCAAATTCAT+CGG | - | chr7_1:16062073-16062092 | Msa1011570:CDS | 25.0% |
| !! | GACTTTTCCATTTCTTATTA+AGG | - | chr7_1:16062750-16062769 | Msa1011570:intron | 25.0% |
| ! | GTCAAATCCTTAATAAGAAA+TGG | + | chr7_1:16062760-16062779 | None:intergenic | 25.0% |
| ! | ACATACATAAATCTAACCAA+CGG | + | chr7_1:16063343-16063362 | None:intergenic | 25.0% |
| !! | TTTTTGGTCTTTCGTATAGT+TGG | + | chr7_1:16059595-16059614 | None:intergenic | 30.0% |
| TCTATCCAAAAAAATCCGTT+GGG | + | chr7_1:16060138-16060157 | None:intergenic | 30.0% | |
| ATCTATCCAAAAAAATCCGT+TGG | + | chr7_1:16060139-16060158 | None:intergenic | 30.0% | |
| !! | CAGTTTTGTAAAGTTGAGTT+AGG | + | chr7_1:16060191-16060210 | None:intergenic | 30.0% |
| !! | CTTTACAAAACTGACTTGTA+AGG | - | chr7_1:16060198-16060217 | Msa1011570:intron | 30.0% |
| TAACGTAGAATTCACTTTAG+AGG | - | chr7_1:16060277-16060296 | Msa1011570:intron | 30.0% | |
| AACGTAGAATTCACTTTAGA+GGG | - | chr7_1:16060278-16060297 | Msa1011570:intron | 30.0% | |
| !! | AAATGCATGATGGATATTGA+AGG | - | chr7_1:16060331-16060350 | Msa1011570:intron | 30.0% |
| ATAGATGCATAACAAATGAC+AGG | - | chr7_1:16060514-16060533 | Msa1011570:CDS | 30.0% | |
| TAGATGCATAACAAATGACA+GGG | - | chr7_1:16060515-16060534 | Msa1011570:CDS | 30.0% | |
| ! | AAGACTTGTTCGATTTACAT+TGG | - | chr7_1:16060932-16060951 | Msa1011570:CDS | 30.0% |
| ! | AGACTTGTTCGATTTACATT+GGG | - | chr7_1:16060933-16060952 | Msa1011570:CDS | 30.0% |
| TTCTCTAAACTTTGGTATTG+TGG | - | chr7_1:16061065-16061084 | Msa1011570:intron | 30.0% | |
| AAATACTATAGCAGTATAGC+AGG | + | chr7_1:16061102-16061121 | None:intergenic | 30.0% | |
| ! | GCTATACTGCTATAGTATTT+TGG | - | chr7_1:16061102-16061121 | Msa1011570:CDS | 30.0% |
| GTTGTAATTCAGTGTGATAA+TGG | - | chr7_1:16061304-16061323 | Msa1011570:intron | 30.0% | |
| AAATGAGTTACACTGGAAAT+AGG | - | chr7_1:16061479-16061498 | Msa1011570:intron | 30.0% | |
| ATGTTTATGGATGAAATGGT+TGG | + | chr7_1:16061587-16061606 | None:intergenic | 30.0% | |
| AACCATTTCATCCATAAACA+TGG | - | chr7_1:16061586-16061605 | Msa1011570:CDS | 30.0% | |
| ACCATTTCATCCATAAACAT+GGG | - | chr7_1:16061587-16061606 | Msa1011570:CDS | 30.0% | |
| ! | ATTTTCCTCTTGAAGAACAA+TGG | + | chr7_1:16061707-16061726 | None:intergenic | 30.0% |
| CAATAATGCTACTATGAGTT+TGG | - | chr7_1:16061747-16061766 | Msa1011570:CDS | 30.0% | |
| AAAAGCAAAGAAAAGGAGAT+AGG | + | chr7_1:16061994-16062013 | None:intergenic | 30.0% | |
| ! | GATCAATGTGTTGTTAATTG+CGG | - | chr7_1:16062266-16062285 | Msa1011570:intron | 30.0% |
| AAAAATCATCTCCTTCACAT+TGG | + | chr7_1:16062410-16062429 | None:intergenic | 30.0% | |
| ! | GTATTATTTCTCCACTCATA+GGG | + | chr7_1:16062669-16062688 | None:intergenic | 30.0% |
| ! | TGTATTATTTCTCCACTCAT+AGG | + | chr7_1:16062670-16062689 | None:intergenic | 30.0% |
| ! | ACTTTGAGAATTGAACAAGA+AGG | - | chr7_1:16062778-16062797 | Msa1011570:intron | 30.0% |
| TTGAAAAAGGATAGTGATGA+TGG | - | chr7_1:16062826-16062845 | Msa1011570:intron | 30.0% | |
| ! | AGAAGAAACTTTGAGAAAAC+AGG | - | chr7_1:16062974-16062993 | Msa1011570:intron | 30.0% |
| GAGTAGCTAAATCTTTAGTT+TGG | - | chr7_1:16063397-16063416 | Msa1011570:intron | 30.0% | |
| CAATCACATGAATTGATCTT+AGG | - | chr7_1:16063565-16063584 | Msa1011570:intron | 30.0% | |
| ! | AGGAATAAATATATGGTGGA+AGG | - | chr7_1:16063733-16063752 | Msa1011570:exon | 30.0% |
| !!! | TGGCTTGATGTGTTGATTTT+TGG | + | chr7_1:16059611-16059630 | None:intergenic | 35.0% |
| ! | TTAGAGTTTGAAATCGTCAG+AGG | + | chr7_1:16059796-16059815 | None:intergenic | 35.0% |
| TGAAAGACAGGAATACTTAG+AGG | + | chr7_1:16059847-16059866 | None:intergenic | 35.0% | |
| TCTAAGTATTCCTGTCTTTC+AGG | - | chr7_1:16059846-16059865 | Msa1011570:intron | 35.0% | |
| !! | TTAAGGCCCATAGTTTTTAG+AGG | - | chr7_1:16060758-16060777 | Msa1011570:CDS | 35.0% |
| ! | ACCGAACCTCTAAAAACTAT+GGG | + | chr7_1:16060767-16060786 | None:intergenic | 35.0% |
| ! | AACCGAACCTCTAAAAACTA+TGG | + | chr7_1:16060768-16060787 | None:intergenic | 35.0% |
| !! | TAGTTTTTAGAGGTTCGGTT+CGG | - | chr7_1:16060768-16060787 | Msa1011570:CDS | 35.0% |
| CTACTAGACATCATTTGTCA+GGG | + | chr7_1:16060823-16060842 | None:intergenic | 35.0% | |
| ACTACTAGACATCATTTGTC+AGG | + | chr7_1:16060824-16060843 | None:intergenic | 35.0% | |
| TGACACTTGTTCCTAAGTTT+AGG | + | chr7_1:16061355-16061374 | None:intergenic | 35.0% | |
| AACAAAGTCACAACCTGAAA+GGG | + | chr7_1:16061545-16061564 | None:intergenic | 35.0% | |
| CCATTTCATCCATAAACATG+GGG | - | chr7_1:16061588-16061607 | Msa1011570:CDS | 35.0% | |
| TTTGAGAATCCCCATGTTTA+TGG | + | chr7_1:16061600-16061619 | None:intergenic | 35.0% | |
| ATTGTCTCCTTGAAGTCTAA+TGG | - | chr7_1:16061676-16061695 | Msa1011570:CDS | 35.0% | |
| GTTCTTCAAGAGGAAAATGA+CGG | - | chr7_1:16061709-16061728 | Msa1011570:CDS | 35.0% | |
| GAGTTGCTAAAGTAAACTGT+TGG | + | chr7_1:16061891-16061910 | None:intergenic | 35.0% | |
| AAGAACGAAATGGAATCACA+AGG | + | chr7_1:16061927-16061946 | None:intergenic | 35.0% | |
| ATGCAAATTTCAAGCTTGAG+AGG | + | chr7_1:16061955-16061974 | None:intergenic | 35.0% | |
| TTGGATGTTGTAATTGGCAA+GGG | + | chr7_1:16062503-16062522 | None:intergenic | 35.0% | |
| CTTCTCTTGGATGTTGTAAT+TGG | + | chr7_1:16062509-16062528 | None:intergenic | 35.0% | |
| TTGGATTTAGTAATCGGTGA+TGG | + | chr7_1:16062583-16062602 | None:intergenic | 35.0% | |
| CTGCTCTTGGATTTAGTAAT+CGG | + | chr7_1:16062589-16062608 | None:intergenic | 35.0% | |
| !! | TGATGATGGCATATTGATGA+TGG | - | chr7_1:16062840-16062859 | Msa1011570:intron | 35.0% |
| AGTCAACTGCAATGAATTCA+TGG | - | chr7_1:16062917-16062936 | Msa1011570:intron | 35.0% | |
| TGGTGAAATCAAACCAAAAC+AGG | - | chr7_1:16062937-16062956 | Msa1011570:intron | 35.0% | |
| !!! | CTCTTTTGCTGCTTTTTCTT+CGG | - | chr7_1:16063898-16063917 | Msa1011570:five_prime_UTR | 35.0% |
| !!! | TCTTTTGCTGCTTTTTCTTC+GGG | - | chr7_1:16063899-16063918 | Msa1011570:five_prime_UTR | 35.0% |
| AAAACAGTAAAGCTGCAACA+GGG | + | chr7_1:16063934-16063953 | None:intergenic | 35.0% | |
| TAAAACAGTAAAGCTGCAAC+AGG | + | chr7_1:16063935-16063954 | None:intergenic | 35.0% | |
| ! | TTGGTCTTTCGTATAGTTGG+TGG | + | chr7_1:16059592-16059611 | None:intergenic | 40.0% |
| AGAAGTAGTAGAATCCTTGG+TGG | + | chr7_1:16059631-16059650 | None:intergenic | 40.0% | |
| CTGAGAAGTAGTAGAATCCT+TGG | + | chr7_1:16059634-16059653 | None:intergenic | 40.0% | |
| ! | CTGTTAGTCAAAAGGTGCAA+TGG | - | chr7_1:16059768-16059787 | Msa1011570:CDS | 40.0% |
| CAAATGCATACCTGAAAGAC+AGG | + | chr7_1:16059859-16059878 | None:intergenic | 40.0% | |
| ! | GTAATCCGATTGGCTAATAG+TGG | - | chr7_1:16060094-16060113 | Msa1011570:intron | 40.0% |
| GATCACCACTATTAGCCAAT+CGG | + | chr7_1:16060102-16060121 | None:intergenic | 40.0% | |
| ATTGGCTAATAGTGGTGATC+TGG | - | chr7_1:16060102-16060121 | Msa1011570:intron | 40.0% | |
| !! | CAAAACTGACTTGTAAGGTG+AGG | - | chr7_1:16060203-16060222 | Msa1011570:intron | 40.0% |
| ! | TTTTCCCTCCTCATCTTATG+CGG | - | chr7_1:16060416-16060435 | Msa1011570:CDS | 40.0% |
| CTATTAAGCCGCATAAGATG+AGG | + | chr7_1:16060427-16060446 | None:intergenic | 40.0% | |
| CTCATCTTATGCGGCTTAAT+AGG | - | chr7_1:16060425-16060444 | Msa1011570:CDS | 40.0% | |
| AGCCTCCTATTTCATAGGAA+CGG | + | chr7_1:16060541-16060560 | None:intergenic | 40.0% | |
| TTCCTATGAAATAGGAGGCT+CGG | - | chr7_1:16060541-16060560 | Msa1011570:CDS | 40.0% | |
| !! | GCCCATAGTTTTTAGAGGTT+CGG | - | chr7_1:16060763-16060782 | Msa1011570:CDS | 40.0% |
| CGAACAAGTCTTTGCTTCTA+AGG | + | chr7_1:16060924-16060943 | None:intergenic | 40.0% | |
| CAGTATAGCAGGTAGCAATA+TGG | + | chr7_1:16061091-16061110 | None:intergenic | 40.0% | |
| ! | CTGCAACCATGTTTTGCATT+CGG | + | chr7_1:16061454-16061473 | None:intergenic | 40.0% |
| GAATGCAAAACATGGTTGCA+GGG | - | chr7_1:16061453-16061472 | Msa1011570:intron | 40.0% | |
| AGGGAGAAAATGAGTTACAC+TGG | - | chr7_1:16061472-16061491 | Msa1011570:intron | 40.0% | |
| ACAAAGTCACAACCTGAAAG+GGG | + | chr7_1:16061544-16061563 | None:intergenic | 40.0% | |
| CAACAAAGTCACAACCTGAA+AGG | + | chr7_1:16061546-16061565 | None:intergenic | 40.0% | |
| CCCCATGTTTATGGATGAAA+TGG | + | chr7_1:16061591-16061610 | None:intergenic | 40.0% | |
| AGACTTCAAGGAGACAATGA+AGG | + | chr7_1:16061674-16061693 | None:intergenic | 40.0% | |
| TGGAACCATTGTTCTTCAAG+AGG | - | chr7_1:16061699-16061718 | Msa1011570:CDS | 40.0% | |
| ! | GCAGTCAATATTTGCTGCAT+TGG | - | chr7_1:16061775-16061794 | Msa1011570:CDS | 40.0% |
| AGAGGTTCAGAAGAACGAAA+TGG | + | chr7_1:16061937-16061956 | None:intergenic | 40.0% | |
| TGAAATTTGCATAACCCCCA+TGG | - | chr7_1:16061963-16061982 | Msa1011570:CDS | 40.0% | |
| AGCAAAGAAAAGGAGATAGG+CGG | + | chr7_1:16061991-16062010 | None:intergenic | 40.0% | |
| ! | TTTTGACAAGACACAGTACC+AGG | - | chr7_1:16062426-16062445 | Msa1011570:intron | 40.0% |
| ATGCAACGTCTGATCTTTGA+TGG | - | chr7_1:16062454-16062473 | Msa1011570:intron | 40.0% | |
| CTTGGATGTTGTAATTGGCA+AGG | + | chr7_1:16062504-16062523 | None:intergenic | 40.0% | |
| ! | TTTAGTAATCGGTGATGGTG+CGG | + | chr7_1:16062578-16062597 | None:intergenic | 40.0% |
| CGATTACTAAATCCAAGAGC+AGG | - | chr7_1:16062587-16062606 | Msa1011570:intron | 40.0% | |
| TTCATGATAAGGGTTGCCAA+CGG | + | chr7_1:16062638-16062657 | None:intergenic | 40.0% | |
| GGCGATTGTCTTCATGATAA+GGG | + | chr7_1:16062648-16062667 | None:intergenic | 40.0% | |
| ! | TTGAGCTCTTGTTCCTGTTT+TGG | + | chr7_1:16062953-16062972 | None:intergenic | 40.0% |
| TGGCACGTTTGCTTAAACTT+GGG | + | chr7_1:16063009-16063028 | None:intergenic | 40.0% | |
| TTGAAACGATGTGGAGTTCA+TGG | - | chr7_1:16063052-16063071 | Msa1011570:intron | 40.0% | |
| GCAAGTTCATCAACCAATTG+TGG | + | chr7_1:16063121-16063140 | None:intergenic | 40.0% | |
| ATGCCTTCATTAATCTGACG+TGG | + | chr7_1:16063146-16063165 | None:intergenic | 40.0% | |
| !! | TCAGATTAATGAAGGCATCG+TGG | - | chr7_1:16063148-16063167 | Msa1011570:intron | 40.0% |
| TAAATATCCAGCTGCTAGCA+CGG | - | chr7_1:16063232-16063251 | Msa1011570:intron | 40.0% | |
| !! | TATTGCGATTTTGAGCACTG+AGG | - | chr7_1:16063272-16063291 | Msa1011570:intron | 40.0% |
| !! | GAGTGTTGGTATGAGATTCA+GGG | + | chr7_1:16063321-16063340 | None:intergenic | 40.0% |
| AAATCTAACCAACGGAGTGT+TGG | + | chr7_1:16063335-16063354 | None:intergenic | 40.0% | |
| CATGTGATTGCAAGAAGCTA+GGG | + | chr7_1:16063555-16063574 | None:intergenic | 40.0% | |
| TCATGTGATTGCAAGAAGCT+AGG | + | chr7_1:16063556-16063575 | None:intergenic | 40.0% | |
| AGCGCAAGAATACGAAGATA+CGG | - | chr7_1:16063794-16063813 | Msa1011570:intron | 40.0% | |
| AAAGCAGCAAAAGAGGTTCT+GGG | + | chr7_1:16063893-16063912 | None:intergenic | 40.0% | |
| AAAAGCAGCAAAAGAGGTTC+TGG | + | chr7_1:16063894-16063913 | None:intergenic | 40.0% | |
| CGAAGAAAAAGCAGCAAAAG+AGG | + | chr7_1:16063900-16063919 | None:intergenic | 40.0% | |
| !! | TCGTATAGTTGGTGGACGTT+TGG | + | chr7_1:16059584-16059603 | None:intergenic | 45.0% |
| ATCAACACATCAAGCCACCA+AGG | - | chr7_1:16059614-16059633 | Msa1011570:CDS | 45.0% | |
| CATCTTGAGCGTAATCCGAT+TGG | - | chr7_1:16060084-16060103 | Msa1011570:intron | 45.0% | |
| AATAGTGGTGATCTGGTAGC+AGG | - | chr7_1:16060109-16060128 | Msa1011570:intron | 45.0% | |
| TAAGCCGCATAAGATGAGGA+GGG | + | chr7_1:16060423-16060442 | None:intergenic | 45.0% | |
| TTAAGCCGCATAAGATGAGG+AGG | + | chr7_1:16060424-16060443 | None:intergenic | 45.0% | |
| GTGTCTCTATAGGGACATCT+TGG | + | chr7_1:16060471-16060490 | None:intergenic | 45.0% | |
| AACCGAGCCTCCTATTTCAT+AGG | + | chr7_1:16060546-16060565 | None:intergenic | 45.0% | |
| TAGACATCATTTGTCAGGGC+CGG | + | chr7_1:16060819-16060838 | None:intergenic | 45.0% | |
| CTACCTGCTGTCCTAAACTT+AGG | - | chr7_1:16061341-16061360 | Msa1011570:intron | 45.0% | |
| ! | GTTCCTAAGTTTAGGACAGC+AGG | + | chr7_1:16061347-16061366 | None:intergenic | 45.0% |
| ! | CCATGTTTTGCATTCGGACA+TGG | + | chr7_1:16061448-16061467 | None:intergenic | 45.0% |
| CCATGTCCGAATGCAAAACA+TGG | - | chr7_1:16061445-16061464 | Msa1011570:intron | 45.0% | |
| CGAATGCAAAACATGGTTGC+AGG | - | chr7_1:16061452-16061471 | Msa1011570:intron | 45.0% | |
| GTCTCCTTGAAGTCTAATGG+TGG | - | chr7_1:16061679-16061698 | Msa1011570:CDS | 45.0% | |
| GGTTCCACCATTAGACTTCA+AGG | + | chr7_1:16061686-16061705 | None:intergenic | 45.0% | |
| ! | TGCATTGGTCCTAACTCTTC+TGG | - | chr7_1:16061790-16061809 | Msa1011570:CDS | 45.0% |
| ! | GCATTGGTCCTAACTCTTCT+GGG | - | chr7_1:16061791-16061810 | Msa1011570:CDS | 45.0% |
| TACTCAGACCCAGAAGAGTT+AGG | + | chr7_1:16061802-16061821 | None:intergenic | 45.0% | |
| TCTACATAATCACCCCGACT+AGG | - | chr7_1:16062344-16062363 | Msa1011570:intron | 45.0% | |
| TCTGAACTCTTAACCCTCAG+GGG | + | chr7_1:16062379-16062398 | None:intergenic | 45.0% | |
| GTCTGAACTCTTAACCCTCA+GGG | + | chr7_1:16062380-16062399 | None:intergenic | 45.0% | |
| TGTCTGAACTCTTAACCCTC+AGG | + | chr7_1:16062381-16062400 | None:intergenic | 45.0% | |
| AGACACAGTAGCCAATGTGA+AGG | - | chr7_1:16062396-16062415 | Msa1011570:intron | 45.0% | |
| TGTTGTAATTGGCAAGGGTC+AGG | + | chr7_1:16062498-16062517 | None:intergenic | 45.0% | |
| GGGCGATTGTCTTCATGATA+AGG | + | chr7_1:16062649-16062668 | None:intergenic | 45.0% | |
| GTGGCACGTTTGCTTAAACT+TGG | + | chr7_1:16063010-16063029 | None:intergenic | 45.0% | |
| TTTAAGCAAACGTGCCACGT+TGG | - | chr7_1:16063012-16063031 | Msa1011570:intron | 45.0% | |
| TGGAGTTCATGGTGACATTC+TGG | - | chr7_1:16063063-16063082 | Msa1011570:intron | 45.0% | |
| !! | GTGACATTCTGGAACTTTCG+TGG | - | chr7_1:16063074-16063093 | Msa1011570:intron | 45.0% |
| AAAACGCAACGTGCCACAAT+TGG | - | chr7_1:16063105-16063124 | Msa1011570:intron | 45.0% | |
| CTGCCACGTCAGATTAATGA+AGG | - | chr7_1:16063140-16063159 | Msa1011570:intron | 45.0% | |
| AAATATCCAGCTGCTAGCAC+GGG | - | chr7_1:16063233-16063252 | Msa1011570:intron | 45.0% | |
| !! | GGAGTGTTGGTATGAGATTC+AGG | + | chr7_1:16063322-16063341 | None:intergenic | 45.0% |
| ATCTCATACCAACACTCCGT+TGG | - | chr7_1:16063324-16063343 | Msa1011570:intron | 45.0% | |
| !! | ATATATGGTGGAAGGTGCCT+TGG | - | chr7_1:16063741-16063760 | Msa1011570:intron | 45.0% |
| TGCCTTGGAGCAAAAGAAAG+AGG | - | chr7_1:16063756-16063775 | Msa1011570:intron | 45.0% | |
| ! | GTCCTCTTTCTTTTGCTCCA+AGG | + | chr7_1:16063761-16063780 | None:intergenic | 45.0% |
| TGGAGCAAAAGAAAGAGGAC+TGG | - | chr7_1:16063761-16063780 | Msa1011570:intron | 45.0% | |
| GCGCAAGAATACGAAGATAC+GGG | - | chr7_1:16063795-16063814 | Msa1011570:intron | 45.0% | |
| CGCAAGAATACGAAGATACG+GGG | - | chr7_1:16063796-16063815 | Msa1011570:intron | 45.0% | |
| AAGCAGCAAAAGAGGTTCTG+GGG | + | chr7_1:16063892-16063911 | None:intergenic | 45.0% | |
| AAGCTGCAACAGGGTAACTT+GGG | + | chr7_1:16063925-16063944 | None:intergenic | 45.0% | |
| AAAGCTGCAACAGGGTAACT+TGG | + | chr7_1:16063926-16063945 | None:intergenic | 45.0% | |
| GTTGTGCGCGAAGTGTATAG+CGG | + | chr7_1:16060014-16060033 | None:intergenic | 50.0% | |
| CGGATTACGCTCAAGATGTC+CGG | + | chr7_1:16060082-16060101 | None:intergenic | 50.0% | |
| !!! | GGTGGCCCAACGGATTTTTT+TGG | - | chr7_1:16060130-16060149 | Msa1011570:intron | 50.0% |
| CAGGGCCGTTCCTATGAAAT+AGG | - | chr7_1:16060533-16060552 | Msa1011570:CDS | 50.0% | |
| GGCCGTTCCTATGAAATAGG+AGG | - | chr7_1:16060536-16060555 | Msa1011570:CDS | 50.0% | |
| CCTGAAAGGGGACAGTAACA+TGG | + | chr7_1:16061532-16061551 | None:intergenic | 50.0% | |
| CCATGTTACTGTCCCCTTTC+AGG | - | chr7_1:16061529-16061548 | Msa1011570:intron | 50.0% | |
| AAGGAGATAGGCGGTACCAT+GGG | + | chr7_1:16061982-16062001 | None:intergenic | 50.0% | |
| AAAGGAGATAGGCGGTACCA+TGG | + | chr7_1:16061983-16062002 | None:intergenic | 50.0% | |
| AGGGGGATCATCTTCCTAGT+CGG | + | chr7_1:16062361-16062380 | None:intergenic | 50.0% | |
| TAGGAAGATGATCCCCCTGA+GGG | - | chr7_1:16062363-16062382 | Msa1011570:intron | 50.0% | |
| CTGAACTCTTAACCCTCAGG+GGG | + | chr7_1:16062378-16062397 | None:intergenic | 50.0% | |
| TCATCTAGTCCCCAATGAGG+CGG | + | chr7_1:16062552-16062571 | None:intergenic | 50.0% | |
| TGGTCATCTAGTCCCCAATG+AGG | + | chr7_1:16062555-16062574 | None:intergenic | 50.0% | |
| ATGATAAGGGTTGCCAACGG+CGG | + | chr7_1:16062635-16062654 | None:intergenic | 50.0% | |
| GAAGACAATCGCCCTATGAG+TGG | - | chr7_1:16062655-16062674 | Msa1011570:intron | 50.0% | |
| !! | AAACGTGCCACGTTGGTAAC+TGG | - | chr7_1:16063019-16063038 | Msa1011570:intron | 50.0% |
| !!! | GCGATTTTGAGCACTGAGGA+CGG | - | chr7_1:16063276-16063295 | Msa1011570:intron | 50.0% |
| !!! | TTTTGAGCACTGAGGACGGT+AGG | - | chr7_1:16063280-16063299 | Msa1011570:intron | 50.0% |
| ! | GAGATTCAGGGCTTGTTCCT+TGG | + | chr7_1:16063309-16063328 | None:intergenic | 50.0% |
| ATCTCCCCTTACCAGAAGCT+TGG | - | chr7_1:16063829-16063848 | Msa1011570:intron | 50.0% | |
| !! | AGCAAAAGAGGTTCTGGGGA+CGG | + | chr7_1:16063888-16063907 | None:intergenic | 50.0% |
| CGCGCACAACGTGAAACACA+AGG | - | chr7_1:16060024-16060043 | Msa1011570:intron | 55.0% | |
| AGATGTCCGGTTCTCGACGT+GGG | + | chr7_1:16060069-16060088 | None:intergenic | 55.0% | |
| AAGATGTCCGGTTCTCGACG+TGG | + | chr7_1:16060070-16060089 | None:intergenic | 55.0% | |
| AGTGGTGATCTGGTAGCAGG+TGG | - | chr7_1:16060112-16060131 | Msa1011570:intron | 55.0% | |
| ATTTGTCAGGGCCGGACCTT+GGG | + | chr7_1:16060811-16060830 | None:intergenic | 55.0% | |
| AGGAGATAGGCGGTACCATG+GGG | + | chr7_1:16061981-16062000 | None:intergenic | 55.0% | |
| GGGGATCATCTTCCTAGTCG+GGG | + | chr7_1:16062359-16062378 | None:intergenic | 55.0% | |
| GGGGGATCATCTTCCTAGTC+GGG | + | chr7_1:16062360-16062379 | None:intergenic | 55.0% | |
| CTAGGAAGATGATCCCCCTG+AGG | - | chr7_1:16062362-16062381 | Msa1011570:intron | 55.0% | |
| TCAGACGTTGCATGTGCACC+TGG | + | chr7_1:16062447-16062466 | None:intergenic | 55.0% | |
| ! | GGTGGAGGGTTGACTTCTCT+TGG | + | chr7_1:16062522-16062541 | None:intergenic | 55.0% |
| ! | AGTAATCGGTGATGGTGCGG+TGG | + | chr7_1:16062575-16062594 | None:intergenic | 55.0% |
| GGTGGATGATTGCCTGCTCT+TGG | + | chr7_1:16062602-16062621 | None:intergenic | 55.0% | |
| AACGGCGGCAGATGATAAGG+TGG | + | chr7_1:16062620-16062639 | None:intergenic | 55.0% | |
| ACCTTATCATCTGCCGCCGT+TGG | - | chr7_1:16062619-16062638 | Msa1011570:intron | 55.0% | |
| CGTGGCACGTTGAAACGATG+TGG | - | chr7_1:16063043-16063062 | Msa1011570:intron | 55.0% | |
| CTGGAACTTTCGTGGCACGA+AGG | - | chr7_1:16063082-16063101 | Msa1011570:intron | 55.0% | |
| !! | ATGAAGGCATCGTGGCACGA+TGG | - | chr7_1:16063156-16063175 | Msa1011570:intron | 55.0% |
| CCATCATCGTGCCACGATAC+GGG | + | chr7_1:16063183-16063202 | None:intergenic | 55.0% | |
| CCCATCATCGTGCCACGATA+CGG | + | chr7_1:16063184-16063203 | None:intergenic | 55.0% | |
| CCGTATCGTGGCACGATGAT+GGG | - | chr7_1:16063181-16063200 | Msa1011570:intron | 55.0% | |
| CGTGCCAAGCTTCTGGTAAG+GGG | + | chr7_1:16063836-16063855 | None:intergenic | 55.0% | |
| CCGTGCCAAGCTTCTGGTAA+GGG | + | chr7_1:16063837-16063856 | None:intergenic | 55.0% | |
| CCCTTACCAGAAGCTTGGCA+CGG | - | chr7_1:16063834-16063853 | Msa1011570:intron | 55.0% | |
| !! | GCAAAAGAGGTTCTGGGGAC+GGG | + | chr7_1:16063887-16063906 | None:intergenic | 55.0% |
| CACAACCCCACGTCGAGAAC+CGG | - | chr7_1:16060060-16060079 | Msa1011570:intron | 60.0% | |
| GATGTCCGGTTCTCGACGTG+GGG | + | chr7_1:16060068-16060087 | None:intergenic | 60.0% | |
| TCTGGTAGCAGGTGGCCCAA+CGG | - | chr7_1:16060120-16060139 | Msa1011570:intron | 60.0% | |
| TTCCTCCACTCCCCAAGGTC+CGG | - | chr7_1:16060797-16060816 | Msa1011570:CDS | 60.0% | |
| TTTGTCAGGGCCGGACCTTG+GGG | + | chr7_1:16060810-16060829 | None:intergenic | 60.0% | |
| CATTTGTCAGGGCCGGACCT+TGG | + | chr7_1:16060812-16060831 | None:intergenic | 60.0% | |
| GGAGATAGGCGGTACCATGG+GGG | + | chr7_1:16061980-16061999 | None:intergenic | 60.0% | |
| ACCTCGTCCTCCGCCTCATT+GGG | - | chr7_1:16062539-16062558 | Msa1011570:intron | 60.0% | |
| TCTAGTCCCCAATGAGGCGG+AGG | + | chr7_1:16062549-16062568 | None:intergenic | 60.0% | |
| GCCAACGGCGGCAGATGATA+AGG | + | chr7_1:16062623-16062642 | None:intergenic | 60.0% | |
| !! | GCCACGTTGGTAACTGGTCG+TGG | - | chr7_1:16063025-16063044 | Msa1011570:intron | 60.0% |
| GCCACGACCAGTTACCAACG+TGG | + | chr7_1:16063029-16063048 | None:intergenic | 60.0% | |
| CCCGTATCGTGGCACGATGA+TGG | - | chr7_1:16063180-16063199 | Msa1011570:intron | 60.0% | |
| TCCAGCTGCTAGCACGGGTT+AGG | - | chr7_1:16063238-16063257 | Msa1011570:intron | 60.0% | |
| ! | CCAGCTGCTAGCACGGGTTA+GGG | - | chr7_1:16063239-16063258 | Msa1011570:intron | 60.0% |
| CTGAGGACGGTAGGAGACCA+AGG | - | chr7_1:16063289-16063308 | Msa1011570:intron | 60.0% | |
| GCCGTGCCAAGCTTCTGGTA+AGG | + | chr7_1:16063838-16063857 | None:intergenic | 60.0% | |
| AGCGCTTCCTCCACTCCCCA+AGG | - | chr7_1:16060792-16060811 | Msa1011570:CDS | 65.0% | |
| CAATGAGGCGGAGGACGAGG+TGG | + | chr7_1:16062540-16062559 | None:intergenic | 65.0% | |
| CACCTCGTCCTCCGCCTCAT+TGG | - | chr7_1:16062538-16062557 | Msa1011570:intron | 65.0% | |
| CCTCGTCCTCCGCCTCATTG+GGG | - | chr7_1:16062540-16062559 | Msa1011570:intron | 65.0% | |
| GGCACGATGGTCCCGTATCG+TGG | - | chr7_1:16063169-16063188 | Msa1011570:intron | 65.0% | |
| CCCTAACCCGTGCTAGCAGC+TGG | + | chr7_1:16063242-16063261 | None:intergenic | 65.0% | |
| GCCCGTGCCAACATGTGGCA+CGG | - | chr7_1:16063856-16063875 | Msa1011570:intron | 65.0% | |
| GCCGTGCCACATGTTGGCAC+GGG | + | chr7_1:16063860-16063879 | None:intergenic | 65.0% | |
| GGCCGTGCCACATGTTGGCA+CGG | + | chr7_1:16063861-16063880 | None:intergenic | 65.0% | |
| !! | AGAGGTTCTGGGGACGGGCA+CGG | + | chr7_1:16063882-16063901 | None:intergenic | 65.0% |
| GAGGCGGAGGACGAGGTGGA+GGG | + | chr7_1:16062536-16062555 | None:intergenic | 70.0% | |
| TGAGGCGGAGGACGAGGTGG+AGG | + | chr7_1:16062537-16062556 | None:intergenic | 70.0% | |
| CCCCAATGAGGCGGAGGACG+AGG | + | chr7_1:16062543-16062562 | None:intergenic | 70.0% | |
| CACGGGCCGTGCCAAGCTTC+TGG | + | chr7_1:16063843-16063862 | None:intergenic | 70.0% | |
| GCACGGCCCGTGCCAACATG+TGG | - | chr7_1:16063851-16063870 | Msa1011570:intron | 70.0% | |
| GGCACGGCCGTGCCACATGT+TGG | + | chr7_1:16063866-16063885 | None:intergenic | 70.0% | |
| GGCCGGACCTTGGGGAGTGG+AGG | + | chr7_1:16060802-16060821 | None:intergenic | 75.0% | |
| CAGGGCCGGACCTTGGGGAG+TGG | + | chr7_1:16060805-16060824 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 16059574 | 16063963 | 16059574 | ID=Msa1011570;Name=Msa1011570 |
| chr7_1 | mRNA | 16059574 | 16063963 | 16059574 | ID=Msa1011570-mRNA-1;Parent=Msa1011570;Name=Msa1011570-mRNA-1;_AED=0.81;_eAED=0.81;_QI=84|0.16|0.28|0.28|0.83|0.71|7|0|523 |
| chr7_1 | exon | 16059574 | 16059802 | 16059574 | ID=Msa1011570-mRNA-1:exon:4136;Parent=Msa1011570-mRNA-1 |
| chr7_1 | exon | 16060391 | 16060578 | 16060391 | ID=Msa1011570-mRNA-1:exon:4135;Parent=Msa1011570-mRNA-1 |
| chr7_1 | exon | 16060676 | 16060969 | 16060676 | ID=Msa1011570-mRNA-1:exon:4134;Parent=Msa1011570-mRNA-1 |
| chr7_1 | exon | 16061090 | 16061200 | 16061090 | ID=Msa1011570-mRNA-1:exon:4133;Parent=Msa1011570-mRNA-1 |
| chr7_1 | exon | 16061553 | 16062221 | 16061553 | ID=Msa1011570-mRNA-1:exon:4132;Parent=Msa1011570-mRNA-1 |
| chr7_1 | exon | 16063670 | 16063755 | 16063670 | ID=Msa1011570-mRNA-1:exon:4131;Parent=Msa1011570-mRNA-1 |
| chr7_1 | exon | 16063885 | 16063963 | 16063885 | ID=Msa1011570-mRNA-1:exon:4130;Parent=Msa1011570-mRNA-1 |
| chr7_1 | five_prime_UTR | 16063885 | 16063963 | 16063885 | ID=Msa1011570-mRNA-1:five_prime_utr;Parent=Msa1011570-mRNA-1 |
| chr7_1 | five_prime_UTR | 16063751 | 16063755 | 16063751 | ID=Msa1011570-mRNA-1:five_prime_utr;Parent=Msa1011570-mRNA-1 |
| chr7_1 | CDS | 16063670 | 16063750 | 16063670 | ID=Msa1011570-mRNA-1:cds;Parent=Msa1011570-mRNA-1 |
| chr7_1 | CDS | 16061553 | 16062221 | 16061553 | ID=Msa1011570-mRNA-1:cds;Parent=Msa1011570-mRNA-1 |
| chr7_1 | CDS | 16061090 | 16061200 | 16061090 | ID=Msa1011570-mRNA-1:cds;Parent=Msa1011570-mRNA-1 |
| chr7_1 | CDS | 16060676 | 16060969 | 16060676 | ID=Msa1011570-mRNA-1:cds;Parent=Msa1011570-mRNA-1 |
| chr7_1 | CDS | 16060391 | 16060578 | 16060391 | ID=Msa1011570-mRNA-1:cds;Parent=Msa1011570-mRNA-1 |
| chr7_1 | CDS | 16059574 | 16059802 | 16059574 | ID=Msa1011570-mRNA-1:cds;Parent=Msa1011570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
