Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365660 | PNX99987.1 | 92.262 | 168 | 13 | 0 | 48 | 215 | 27 | 194 | 4.84e-106 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365660 | A0A2K3NAC0 | 92.262 | 168 | 13 | 0 | 48 | 215 | 27 | 194 | 2.31e-106 | 313 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106370 | Msa1365660 | -0.803543 | 3.315726e-49 | -8.615850e-47 |
| Msa0605170 | Msa1365660 | 0.822802 | 1.949483e-53 | -8.615850e-47 |
| Msa0879010 | Msa1365660 | 0.974791 | 8.790336e-139 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365660 | MtrunA17_Chr6g0461701 | 95.238 | 168 | 8 | 0 | 48 | 215 | 145 | 312 | 7.78e-106 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365660 | AT5G17570.1 | 65.663 | 166 | 52 | 1 | 48 | 213 | 144 | 304 | 1.20e-69 | 216 |
| Msa1365660 | AT5G17570.2 | 65.663 | 166 | 52 | 1 | 48 | 213 | 144 | 304 | 1.31e-69 | 215 |
| Msa1365660 | AT3G03500.2 | 51.807 | 166 | 40 | 2 | 48 | 213 | 110 | 235 | 7.72e-46 | 152 |
| Msa1365660 | AT3G03500.1 | 51.807 | 166 | 40 | 2 | 48 | 213 | 144 | 269 | 1.18e-45 | 152 |
| Msa1365660 | AT3G03500.3 | 64.151 | 53 | 19 | 0 | 48 | 100 | 144 | 196 | 5.07e-16 | 73.9 |
Find 34 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAATTCTTATTGTTATTA+TGG | 0.169330 | tig0018369:-253062 | Msa1365660:CDS |
| CGTAGATTCTCTTTCTCTAA+TGG | 0.276541 | tig0018369:-253026 | Msa1365660:CDS |
| TCTCTTGACAATGTGCTTCA+TGG | 0.320207 | tig0018369:-252584 | Msa1365660:CDS |
| CTATTTAGGTCTCTTCTGAT+AGG | 0.353528 | tig0018369:-252685 | Msa1365660:intron |
| TATGTCACTAAAAGCTAATA+AGG | 0.393389 | tig0018369:-252816 | Msa1365660:CDS |
| AGAATAAGCGAACTGCATTC+TGG | 0.394096 | tig0018369:+251558 | None:intergenic |
| GTTATCCTTCATTCTTACCT+AGG | 0.423711 | tig0018369:-252902 | Msa1365660:CDS |
| TTCGACTTTGGTAGTGCATC+AGG | 0.424489 | tig0018369:+252641 | None:intergenic |
| CTCTTCTGATAGGATGTTGT+TGG | 0.443450 | tig0018369:-252675 | Msa1365660:CDS |
| GTTCGCTTATTCTCCTATGA+AGG | 0.470681 | tig0018369:-251548 | Msa1365660:CDS |
| AGAGAATCTATGTTCGACTT+TGG | 0.477960 | tig0018369:+252629 | None:intergenic |
| TTCTAAATGTTCCAGGTCTG+TGG | 0.496419 | tig0018369:-252942 | Msa1365660:CDS |
| TATGCTAGAGATTACAAAAG+AGG | 0.500520 | tig0018369:-251600 | Msa1365660:CDS |
| TTACCTAGGTTCAGCTGAGA+TGG | 0.504944 | tig0018369:-252888 | Msa1365660:CDS |
| GGATGGTTGAGTGTATCTTT+CGG | 0.517161 | tig0018369:+252482 | None:intergenic |
| GTAACATCGAAGCATCAGTT+AGG | 0.519550 | tig0018369:+252504 | None:intergenic |
| GAAAGATACACTCAACCATC+CGG | 0.523721 | tig0018369:-252480 | Msa1365660:CDS |
| AGGATAACACCAGCAGGAAA+AGG | 0.528313 | tig0018369:+252917 | None:intergenic |
| TCGAAGCATCAGTTAGGACT+TGG | 0.529353 | tig0018369:+252510 | None:intergenic |
| CGTTATGAATGTTAGCCGGA+TGG | 0.532725 | tig0018369:+252465 | None:intergenic |
| AGGACTTGGGACGAATTAGC+GGG | 0.533334 | tig0018369:+252524 | None:intergenic |
| GGCGAAGAAAATGCTGAAGA+TGG | 0.551302 | tig0018369:-252795 | Msa1365660:intron |
| GAATGAAGGATAACACCAGC+AGG | 0.557862 | tig0018369:+252911 | None:intergenic |
| TAGGACTTGGGACGAATTAG+CGG | 0.558442 | tig0018369:+252523 | None:intergenic |
| CTTTCTCTAATGGAATGCAA+TGG | 0.561664 | tig0018369:-253016 | Msa1365660:CDS |
| TCTAAATGTTCCAGGTCTGT+GGG | 0.580026 | tig0018369:-252941 | Msa1365660:CDS |
| CTGAACCTAGGTAAGAATGA+AGG | 0.581265 | tig0018369:+252897 | None:intergenic |
| AGGAAAAGGTCCCACAGACC+TGG | 0.582898 | tig0018369:+252931 | None:intergenic |
| GGGAGAAGAATCAGAAGTTG+AGG | 0.586811 | tig0018369:+252544 | None:intergenic |
| GCACCAAGCTTTGAAAACTC+AGG | 0.593705 | tig0018369:+252863 | None:intergenic |
| CTTACGTTATGAATGTTAGC+CGG | 0.594181 | tig0018369:+252461 | None:intergenic |
| GAACCATCTCAGCTGAACCT+AGG | 0.613905 | tig0018369:+252885 | None:intergenic |
| CGAAGCATCAGTTAGGACTT+GGG | 0.625448 | tig0018369:+252511 | None:intergenic |
| TGACATAAGAAATCCAGAGA+AGG | 0.627443 | tig0018369:+252832 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATTAAAAAAAACATAT+GGG | + | tig0018369:251420-251439 | None:intergenic | 10.0% |
| !! | TAAGAATTAAAAAAAACATA+TGG | + | tig0018369:251421-251440 | None:intergenic | 10.0% |
| !!! | TTTAATTCTTATTGTTATTA+TGG | - | tig0018369:251430-251449 | Msa1365660:three_prime_UTR | 10.0% |
| !! | GTAAAAGTAAATTTAAAAAA+TGG | + | tig0018369:252706-252725 | None:intergenic | 10.0% |
| !! | AAGAATTAAAAAAAACATAT+GGG | + | tig0018369:251420-251439 | None:intergenic | 10.0% |
| !! | TAAGAATTAAAAAAAACATA+TGG | + | tig0018369:251421-251440 | None:intergenic | 10.0% |
| !!! | TTTAATTCTTATTGTTATTA+TGG | - | tig0018369:251430-251449 | Msa1365660:three_prime_UTR | 10.0% |
| !! | GTAAAAGTAAATTTAAAAAA+TGG | + | tig0018369:252706-252725 | None:intergenic | 10.0% |
| !! | TCTTATATTCTATTCTATTT+AGG | - | tig0018369:251793-251812 | Msa1365660:intron | 15.0% |
| !!! | GAAAATGCAATTTTTTTTTT+TGG | + | tig0018369:252316-252335 | None:intergenic | 15.0% |
| !! | TAAATTTAAAAAATGGGAAA+CGG | + | tig0018369:252699-252718 | None:intergenic | 15.0% |
| !! | TTCAAAAATAAACAAATTAC+AGG | - | tig0018369:252978-252997 | Msa1365660:CDS | 15.0% |
| !! | TCTTATATTCTATTCTATTT+AGG | - | tig0018369:251793-251812 | Msa1365660:intron | 15.0% |
| !!! | GAAAATGCAATTTTTTTTTT+TGG | + | tig0018369:252316-252335 | None:intergenic | 15.0% |
| !! | TAAATTTAAAAAATGGGAAA+CGG | + | tig0018369:252699-252718 | None:intergenic | 15.0% |
| !! | TTCAAAAATAAACAAATTAC+AGG | - | tig0018369:252978-252997 | Msa1365660:CDS | 15.0% |
| !!! | GGAACATTTAGAATTTTTTA+AGG | + | tig0018369:251543-251562 | None:intergenic | 20.0% |
| !! | TAAAAAATTCTAAATGTTCC+AGG | - | tig0018369:251543-251562 | Msa1365660:CDS | 20.0% |
| !!! | AAGAGATGATTATTTTGAAA+GGG | + | tig0018369:252089-252108 | None:intergenic | 20.0% |
| !!! | TAAGAGATGATTATTTTGAA+AGG | + | tig0018369:252090-252109 | None:intergenic | 20.0% |
| !!! | AATGCAATTTTTTTTTTTGG+TGG | + | tig0018369:252313-252332 | None:intergenic | 20.0% |
| !!! | CATCTTAAATTGCAATTTTA+GGG | - | tig0018369:252544-252563 | Msa1365660:CDS | 20.0% |
| !!! | GGAACATTTAGAATTTTTTA+AGG | + | tig0018369:251543-251562 | None:intergenic | 20.0% |
| !! | TAAAAAATTCTAAATGTTCC+AGG | - | tig0018369:251543-251562 | Msa1365660:CDS | 20.0% |
| !!! | AAGAGATGATTATTTTGAAA+GGG | + | tig0018369:252089-252108 | None:intergenic | 20.0% |
| !!! | TAAGAGATGATTATTTTGAA+AGG | + | tig0018369:252090-252109 | None:intergenic | 20.0% |
| !!! | AATGCAATTTTTTTTTTTGG+TGG | + | tig0018369:252313-252332 | None:intergenic | 20.0% |
| !!! | CATCTTAAATTGCAATTTTA+GGG | - | tig0018369:252544-252563 | Msa1365660:CDS | 20.0% |
| ! | TATGTCACTAAAAGCTAATA+AGG | - | tig0018369:251676-251695 | Msa1365660:intron | 25.0% |
| ! | TCTTGATATAGTTTCATGTA+TGG | - | tig0018369:252393-252412 | Msa1365660:intron | 25.0% |
| !! | AGCATTACATTTTCATACTT+CGG | + | tig0018369:252500-252519 | None:intergenic | 25.0% |
| ! | CCTAAAATTGCAATTTAAGA+TGG | + | tig0018369:252546-252565 | None:intergenic | 25.0% |
| !! | CCATCTTAAATTGCAATTTT+AGG | - | tig0018369:252543-252562 | Msa1365660:CDS | 25.0% |
| ! | TCCATGTCATTATATTCATT+CGG | + | tig0018369:252771-252790 | None:intergenic | 25.0% |
| !!! | CAGAATGATGTTTTAAAGAT+CGG | + | tig0018369:252817-252836 | None:intergenic | 25.0% |
| !! | CTTGATTTCATTTTACATAC+AGG | - | tig0018369:252850-252869 | Msa1365660:CDS | 25.0% |
| !!! | AAGTAATTTTGATCCTTCAT+AGG | + | tig0018369:252960-252979 | None:intergenic | 25.0% |
| ! | TATGTCACTAAAAGCTAATA+AGG | - | tig0018369:251676-251695 | Msa1365660:intron | 25.0% |
| ! | TCTTGATATAGTTTCATGTA+TGG | - | tig0018369:252393-252412 | Msa1365660:intron | 25.0% |
| !! | AGCATTACATTTTCATACTT+CGG | + | tig0018369:252500-252519 | None:intergenic | 25.0% |
| ! | CCTAAAATTGCAATTTAAGA+TGG | + | tig0018369:252546-252565 | None:intergenic | 25.0% |
| !! | CCATCTTAAATTGCAATTTT+AGG | - | tig0018369:252543-252562 | Msa1365660:CDS | 25.0% |
| ! | TCCATGTCATTATATTCATT+CGG | + | tig0018369:252771-252790 | None:intergenic | 25.0% |
| !!! | CAGAATGATGTTTTAAAGAT+CGG | + | tig0018369:252817-252836 | None:intergenic | 25.0% |
| !! | CTTGATTTCATTTTACATAC+AGG | - | tig0018369:252850-252869 | Msa1365660:CDS | 25.0% |
| !!! | AAGTAATTTTGATCCTTCAT+AGG | + | tig0018369:252960-252979 | None:intergenic | 25.0% |
| ! | GATTCTCTTTTCTTTGTTGA+AGG | - | tig0018369:251878-251897 | Msa1365660:intron | 30.0% |
| AAAGGGAAAAGTGACAATAA+AGG | + | tig0018369:252072-252091 | None:intergenic | 30.0% | |
| CATCTCTTATATCATCAACT+TGG | - | tig0018369:252101-252120 | Msa1365660:intron | 30.0% | |
| ! | GGGAAAAAAAAATGGTTTTC+TGG | - | tig0018369:252181-252200 | Msa1365660:intron | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | tig0018369:252265-252284 | Msa1365660:intron | 30.0% | |
| !!! | GCAATTTTTTTTTTTGGTGG+CGG | + | tig0018369:252310-252329 | None:intergenic | 30.0% |
| !!! | TAGGTTTTGAAAGCTTCAAA+GGG | + | tig0018369:252340-252359 | None:intergenic | 30.0% |
| GATATAGTTTCATGTATGGA+AGG | - | tig0018369:252397-252416 | Msa1365660:intron | 30.0% | |
| ! | TTTGAAACAAATTCACCAGT+AGG | - | tig0018369:252423-252442 | Msa1365660:intron | 30.0% |
| ATGAGAACAACTTTCCTTAT+GGG | + | tig0018369:252457-252476 | None:intergenic | 30.0% | |
| ! | GCATTACATTTTCATACTTC+GGG | + | tig0018369:252499-252518 | None:intergenic | 30.0% |
| !! | AATTGCAATTTTAGGGATGA+AGG | - | tig0018369:252551-252570 | Msa1365660:CDS | 30.0% |
| CCATGTCATTATATTCATTC+GGG | + | tig0018369:252770-252789 | None:intergenic | 30.0% | |
| TATGCTAGAGATTACAAAAG+AGG | - | tig0018369:252892-252911 | Msa1365660:CDS | 30.0% | |
| ! | GATTCTCTTTTCTTTGTTGA+AGG | - | tig0018369:251878-251897 | Msa1365660:intron | 30.0% |
| AAAGGGAAAAGTGACAATAA+AGG | + | tig0018369:252072-252091 | None:intergenic | 30.0% | |
| CATCTCTTATATCATCAACT+TGG | - | tig0018369:252101-252120 | Msa1365660:intron | 30.0% | |
| ! | GGGAAAAAAAAATGGTTTTC+TGG | - | tig0018369:252181-252200 | Msa1365660:intron | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | tig0018369:252265-252284 | Msa1365660:intron | 30.0% | |
| !!! | GCAATTTTTTTTTTTGGTGG+CGG | + | tig0018369:252310-252329 | None:intergenic | 30.0% |
| !!! | TAGGTTTTGAAAGCTTCAAA+GGG | + | tig0018369:252340-252359 | None:intergenic | 30.0% |
| GATATAGTTTCATGTATGGA+AGG | - | tig0018369:252397-252416 | Msa1365660:intron | 30.0% | |
| ! | TTTGAAACAAATTCACCAGT+AGG | - | tig0018369:252423-252442 | Msa1365660:intron | 30.0% |
| ATGAGAACAACTTTCCTTAT+GGG | + | tig0018369:252457-252476 | None:intergenic | 30.0% | |
| ! | GCATTACATTTTCATACTTC+GGG | + | tig0018369:252499-252518 | None:intergenic | 30.0% |
| !! | AATTGCAATTTTAGGGATGA+AGG | - | tig0018369:252551-252570 | Msa1365660:CDS | 30.0% |
| CCATGTCATTATATTCATTC+GGG | + | tig0018369:252770-252789 | None:intergenic | 30.0% | |
| TATGCTAGAGATTACAAAAG+AGG | - | tig0018369:252892-252911 | Msa1365660:CDS | 30.0% | |
| CGTAGATTCTCTTTCTCTAA+TGG | - | tig0018369:251466-251485 | Msa1365660:three_prime_UTR | 35.0% | |
| CTTTCTCTAATGGAATGCAA+TGG | - | tig0018369:251476-251495 | Msa1365660:three_prime_UTR | 35.0% | |
| GTTATCCTTCATTCTTACCT+AGG | - | tig0018369:251590-251609 | Msa1365660:CDS | 35.0% | |
| TGACATAAGAAATCCAGAGA+AGG | + | tig0018369:251663-251682 | None:intergenic | 35.0% | |
| CTATTTAGGTCTCTTCTGAT+AGG | - | tig0018369:251807-251826 | Msa1365660:intron | 35.0% | |
| AGAGAATCTATGTTCGACTT+TGG | + | tig0018369:251866-251885 | None:intergenic | 35.0% | |
| CTTACGTTATGAATGTTAGC+CGG | + | tig0018369:252034-252053 | None:intergenic | 35.0% | |
| GCTAACATTCATAACGTAAG+TGG | - | tig0018369:252034-252053 | Msa1365660:intron | 35.0% | |
| TGCATAAAATATGCAAGGTC+TGG | - | tig0018369:252270-252289 | Msa1365660:intron | 35.0% | |
| GCATAAAATATGCAAGGTCT+GGG | - | tig0018369:252271-252290 | Msa1365660:intron | 35.0% | |
| CATAAAATATGCAAGGTCTG+GGG | - | tig0018369:252272-252291 | Msa1365660:intron | 35.0% | |
| !!! | CTAGGTTTTGAAAGCTTCAA+AGG | + | tig0018369:252341-252360 | None:intergenic | 35.0% |
| TGAGAACAACTTTCCTTATG+GGG | + | tig0018369:252456-252475 | None:intergenic | 35.0% | |
| CATGAGAACAACTTTCCTTA+TGG | + | tig0018369:252458-252477 | None:intergenic | 35.0% | |
| AATGCTATCTTCAATGCATG+AGG | - | tig0018369:252514-252533 | Msa1365660:CDS | 35.0% | |
| ATGCTATCTTCAATGCATGA+GGG | - | tig0018369:252515-252534 | Msa1365660:CDS | 35.0% | |
| CCCGAATGAATATAATGACA+TGG | - | tig0018369:252767-252786 | Msa1365660:intron | 35.0% | |
| CGTAGATTCTCTTTCTCTAA+TGG | - | tig0018369:251466-251485 | Msa1365660:three_prime_UTR | 35.0% | |
| CTTTCTCTAATGGAATGCAA+TGG | - | tig0018369:251476-251495 | Msa1365660:three_prime_UTR | 35.0% | |
| GTTATCCTTCATTCTTACCT+AGG | - | tig0018369:251590-251609 | Msa1365660:CDS | 35.0% | |
| TGACATAAGAAATCCAGAGA+AGG | + | tig0018369:251663-251682 | None:intergenic | 35.0% | |
| CTATTTAGGTCTCTTCTGAT+AGG | - | tig0018369:251807-251826 | Msa1365660:intron | 35.0% | |
| AGAGAATCTATGTTCGACTT+TGG | + | tig0018369:251866-251885 | None:intergenic | 35.0% | |
| CTTACGTTATGAATGTTAGC+CGG | + | tig0018369:252034-252053 | None:intergenic | 35.0% | |
| GCTAACATTCATAACGTAAG+TGG | - | tig0018369:252034-252053 | Msa1365660:intron | 35.0% | |
| TGCATAAAATATGCAAGGTC+TGG | - | tig0018369:252270-252289 | Msa1365660:intron | 35.0% | |
| GCATAAAATATGCAAGGTCT+GGG | - | tig0018369:252271-252290 | Msa1365660:intron | 35.0% | |
| CATAAAATATGCAAGGTCTG+GGG | - | tig0018369:252272-252291 | Msa1365660:intron | 35.0% | |
| !!! | CTAGGTTTTGAAAGCTTCAA+AGG | + | tig0018369:252341-252360 | None:intergenic | 35.0% |
| TGAGAACAACTTTCCTTATG+GGG | + | tig0018369:252456-252475 | None:intergenic | 35.0% | |
| CATGAGAACAACTTTCCTTA+TGG | + | tig0018369:252458-252477 | None:intergenic | 35.0% | |
| AATGCTATCTTCAATGCATG+AGG | - | tig0018369:252514-252533 | Msa1365660:CDS | 35.0% | |
| ATGCTATCTTCAATGCATGA+GGG | - | tig0018369:252515-252534 | Msa1365660:CDS | 35.0% | |
| CCCGAATGAATATAATGACA+TGG | - | tig0018369:252767-252786 | Msa1365660:intron | 35.0% | |
| TTCTAAATGTTCCAGGTCTG+TGG | - | tig0018369:251550-251569 | Msa1365660:CDS | 40.0% | |
| TCTAAATGTTCCAGGTCTGT+GGG | - | tig0018369:251551-251570 | Msa1365660:CDS | 40.0% | |
| CTGAACCTAGGTAAGAATGA+AGG | + | tig0018369:251598-251617 | None:intergenic | 40.0% | |
| ! | GTTCCTGAGTTTTCAAAGCT+TGG | - | tig0018369:251626-251645 | Msa1365660:intron | 40.0% |
| !! | GGTGCTTATTTTTCCTTCTC+TGG | - | tig0018369:251647-251666 | Msa1365660:intron | 40.0% |
| CTCTTCTGATAGGATGTTGT+TGG | - | tig0018369:251817-251836 | Msa1365660:intron | 40.0% | |
| TCTCTTGACAATGTGCTTCA+TGG | - | tig0018369:251908-251927 | Msa1365660:intron | 40.0% | |
| ! | GTAACATCGAAGCATCAGTT+AGG | + | tig0018369:251991-252010 | None:intergenic | 40.0% |
| GGATGGTTGAGTGTATCTTT+CGG | + | tig0018369:252013-252032 | None:intergenic | 40.0% | |
| GAAAGATACACTCAACCATC+CGG | - | tig0018369:252012-252031 | Msa1365660:intron | 40.0% | |
| ! | TTAGTTTGAGCTTGCTCTCT+GGG | - | tig0018369:252160-252179 | Msa1365660:intron | 40.0% |
| ! | GCTCTCTGGGGAAAAAAAAA+TGG | - | tig0018369:252173-252192 | Msa1365660:intron | 40.0% |
| !!! | TTTTTTTTTTTGGTGGCGGC+CGG | + | tig0018369:252306-252325 | None:intergenic | 40.0% |
| TTATGGGGAAAGAAACCTAC+TGG | + | tig0018369:252441-252460 | None:intergenic | 40.0% | |
| AGTAGGTTTCTTTCCCCATA+AGG | - | tig0018369:252440-252459 | Msa1365660:intron | 40.0% | |
| !! | GCAATTTTAGGGATGAAGGA+TGG | - | tig0018369:252555-252574 | Msa1365660:CDS | 40.0% |
| TAATGACATGGAAGTCTCAC+TGG | - | tig0018369:252779-252798 | Msa1365660:intron | 40.0% | |
| !! | AAGTCTCACTGGTTTGGTAT+CGG | - | tig0018369:252790-252809 | Msa1365660:intron | 40.0% |
| AGAATAAGCGAACTGCATTC+TGG | + | tig0018369:252937-252956 | None:intergenic | 40.0% | |
| GTTCGCTTATTCTCCTATGA+AGG | - | tig0018369:252944-252963 | Msa1365660:CDS | 40.0% | |
| TTCTAAATGTTCCAGGTCTG+TGG | - | tig0018369:251550-251569 | Msa1365660:CDS | 40.0% | |
| TCTAAATGTTCCAGGTCTGT+GGG | - | tig0018369:251551-251570 | Msa1365660:CDS | 40.0% | |
| CTGAACCTAGGTAAGAATGA+AGG | + | tig0018369:251598-251617 | None:intergenic | 40.0% | |
| ! | GTTCCTGAGTTTTCAAAGCT+TGG | - | tig0018369:251626-251645 | Msa1365660:intron | 40.0% |
| !! | GGTGCTTATTTTTCCTTCTC+TGG | - | tig0018369:251647-251666 | Msa1365660:intron | 40.0% |
| CTCTTCTGATAGGATGTTGT+TGG | - | tig0018369:251817-251836 | Msa1365660:intron | 40.0% | |
| TCTCTTGACAATGTGCTTCA+TGG | - | tig0018369:251908-251927 | Msa1365660:intron | 40.0% | |
| ! | GTAACATCGAAGCATCAGTT+AGG | + | tig0018369:251991-252010 | None:intergenic | 40.0% |
| GGATGGTTGAGTGTATCTTT+CGG | + | tig0018369:252013-252032 | None:intergenic | 40.0% | |
| GAAAGATACACTCAACCATC+CGG | - | tig0018369:252012-252031 | Msa1365660:intron | 40.0% | |
| ! | TTAGTTTGAGCTTGCTCTCT+GGG | - | tig0018369:252160-252179 | Msa1365660:intron | 40.0% |
| ! | GCTCTCTGGGGAAAAAAAAA+TGG | - | tig0018369:252173-252192 | Msa1365660:intron | 40.0% |
| !!! | TTTTTTTTTTTGGTGGCGGC+CGG | + | tig0018369:252306-252325 | None:intergenic | 40.0% |
| TTATGGGGAAAGAAACCTAC+TGG | + | tig0018369:252441-252460 | None:intergenic | 40.0% | |
| AGTAGGTTTCTTTCCCCATA+AGG | - | tig0018369:252440-252459 | Msa1365660:intron | 40.0% | |
| !! | GCAATTTTAGGGATGAAGGA+TGG | - | tig0018369:252555-252574 | Msa1365660:CDS | 40.0% |
| TAATGACATGGAAGTCTCAC+TGG | - | tig0018369:252779-252798 | Msa1365660:intron | 40.0% | |
| !! | AAGTCTCACTGGTTTGGTAT+CGG | - | tig0018369:252790-252809 | Msa1365660:intron | 40.0% |
| AGAATAAGCGAACTGCATTC+TGG | + | tig0018369:252937-252956 | None:intergenic | 40.0% | |
| GTTCGCTTATTCTCCTATGA+AGG | - | tig0018369:252944-252963 | Msa1365660:CDS | 40.0% | |
| AGGATAACACCAGCAGGAAA+AGG | + | tig0018369:251578-251597 | None:intergenic | 45.0% | |
| GAATGAAGGATAACACCAGC+AGG | + | tig0018369:251584-251603 | None:intergenic | 45.0% | |
| TTACCTAGGTTCAGCTGAGA+TGG | - | tig0018369:251604-251623 | Msa1365660:CDS | 45.0% | |
| !! | GCACCAAGCTTTGAAAACTC+AGG | + | tig0018369:251632-251651 | None:intergenic | 45.0% |
| GGCGAAGAAAATGCTGAAGA+TGG | - | tig0018369:251697-251716 | Msa1365660:intron | 45.0% | |
| !! | TTCGACTTTGGTAGTGCATC+AGG | + | tig0018369:251854-251873 | None:intergenic | 45.0% |
| GGGAGAAGAATCAGAAGTTG+AGG | + | tig0018369:251951-251970 | None:intergenic | 45.0% | |
| TAGGACTTGGGACGAATTAG+CGG | + | tig0018369:251972-251991 | None:intergenic | 45.0% | |
| ! | CGAAGCATCAGTTAGGACTT+GGG | + | tig0018369:251984-252003 | None:intergenic | 45.0% |
| ! | TCGAAGCATCAGTTAGGACT+TGG | + | tig0018369:251985-252004 | None:intergenic | 45.0% |
| CGTTATGAATGTTAGCCGGA+TGG | + | tig0018369:252030-252049 | None:intergenic | 45.0% | |
| CAGAGAGCAAGCTCAAACTA+AGG | + | tig0018369:252161-252180 | None:intergenic | 45.0% | |
| ! | CTTAGTTTGAGCTTGCTCTC+TGG | - | tig0018369:252159-252178 | Msa1365660:intron | 45.0% |
| ! | TAGTTTGAGCTTGCTCTCTG+GGG | - | tig0018369:252161-252180 | Msa1365660:intron | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | tig0018369:252243-252262 | Msa1365660:intron | 45.0% |
| !!! | TTTTTTTTTTGGTGGCGGCC+GGG | + | tig0018369:252305-252324 | None:intergenic | 45.0% |
| ACTAGAAGCAGCTGAGAACT+AGG | + | tig0018369:252359-252378 | None:intergenic | 45.0% | |
| AAACCAACCAGCAAACTAGC+CGG | + | tig0018369:252648-252667 | None:intergenic | 45.0% | |
| TTAGCCAGACTGCAATACGA+CGG | + | tig0018369:252676-252695 | None:intergenic | 45.0% | |
| ! | ACATGGAAGTCTCACTGGTT+TGG | - | tig0018369:252784-252803 | Msa1365660:intron | 45.0% |
| AGGATAACACCAGCAGGAAA+AGG | + | tig0018369:251578-251597 | None:intergenic | 45.0% | |
| GAATGAAGGATAACACCAGC+AGG | + | tig0018369:251584-251603 | None:intergenic | 45.0% | |
| TTACCTAGGTTCAGCTGAGA+TGG | - | tig0018369:251604-251623 | Msa1365660:CDS | 45.0% | |
| !! | GCACCAAGCTTTGAAAACTC+AGG | + | tig0018369:251632-251651 | None:intergenic | 45.0% |
| GGCGAAGAAAATGCTGAAGA+TGG | - | tig0018369:251697-251716 | Msa1365660:intron | 45.0% | |
| !! | TTCGACTTTGGTAGTGCATC+AGG | + | tig0018369:251854-251873 | None:intergenic | 45.0% |
| GGGAGAAGAATCAGAAGTTG+AGG | + | tig0018369:251951-251970 | None:intergenic | 45.0% | |
| TAGGACTTGGGACGAATTAG+CGG | + | tig0018369:251972-251991 | None:intergenic | 45.0% | |
| ! | CGAAGCATCAGTTAGGACTT+GGG | + | tig0018369:251984-252003 | None:intergenic | 45.0% |
| ! | TCGAAGCATCAGTTAGGACT+TGG | + | tig0018369:251985-252004 | None:intergenic | 45.0% |
| CGTTATGAATGTTAGCCGGA+TGG | + | tig0018369:252030-252049 | None:intergenic | 45.0% | |
| CAGAGAGCAAGCTCAAACTA+AGG | + | tig0018369:252161-252180 | None:intergenic | 45.0% | |
| ! | CTTAGTTTGAGCTTGCTCTC+TGG | - | tig0018369:252159-252178 | Msa1365660:intron | 45.0% |
| ! | TAGTTTGAGCTTGCTCTCTG+GGG | - | tig0018369:252161-252180 | Msa1365660:intron | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | tig0018369:252243-252262 | Msa1365660:intron | 45.0% |
| !!! | TTTTTTTTTTGGTGGCGGCC+GGG | + | tig0018369:252305-252324 | None:intergenic | 45.0% |
| ACTAGAAGCAGCTGAGAACT+AGG | + | tig0018369:252359-252378 | None:intergenic | 45.0% | |
| AAACCAACCAGCAAACTAGC+CGG | + | tig0018369:252648-252667 | None:intergenic | 45.0% | |
| TTAGCCAGACTGCAATACGA+CGG | + | tig0018369:252676-252695 | None:intergenic | 45.0% | |
| ! | ACATGGAAGTCTCACTGGTT+TGG | - | tig0018369:252784-252803 | Msa1365660:intron | 45.0% |
| !! | TAAAAGTAAATTTAAAAAAT+GGG | + | tig0018369:252705-252724 | None:intergenic | 5.0% |
| !! | TAAAAGTAAATTTAAAAAAT+GGG | + | tig0018369:252705-252724 | None:intergenic | 5.0% |
| GAACCATCTCAGCTGAACCT+AGG | + | tig0018369:251610-251629 | None:intergenic | 50.0% | |
| AGGACTTGGGACGAATTAGC+GGG | + | tig0018369:251971-251990 | None:intergenic | 50.0% | |
| CAACTGAGCTAAGCTCACGA+GGG | + | tig0018369:252240-252259 | None:intergenic | 50.0% | |
| !!! | TTTTTTTTTGGTGGCGGCCG+GGG | + | tig0018369:252304-252323 | None:intergenic | 50.0% |
| ! | CAACGAGTTGAACCGAGAAC+CGG | - | tig0018369:252626-252645 | Msa1365660:CDS | 50.0% |
| TAGCCAGACTGCAATACGAC+GGG | + | tig0018369:252675-252694 | None:intergenic | 50.0% | |
| GAACCATCTCAGCTGAACCT+AGG | + | tig0018369:251610-251629 | None:intergenic | 50.0% | |
| AGGACTTGGGACGAATTAGC+GGG | + | tig0018369:251971-251990 | None:intergenic | 50.0% | |
| CAACTGAGCTAAGCTCACGA+GGG | + | tig0018369:252240-252259 | None:intergenic | 50.0% | |
| !!! | TTTTTTTTTGGTGGCGGCCG+GGG | + | tig0018369:252304-252323 | None:intergenic | 50.0% |
| ! | CAACGAGTTGAACCGAGAAC+CGG | - | tig0018369:252626-252645 | Msa1365660:CDS | 50.0% |
| TAGCCAGACTGCAATACGAC+GGG | + | tig0018369:252675-252694 | None:intergenic | 50.0% | |
| AGGAAAAGGTCCCACAGACC+TGG | + | tig0018369:251564-251583 | None:intergenic | 55.0% | |
| ! | TCTGTGGGACCTTTTCCTGC+TGG | - | tig0018369:251566-251585 | Msa1365660:CDS | 55.0% |
| CCAACTGAGCTAAGCTCACG+AGG | + | tig0018369:252241-252260 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | tig0018369:252238-252257 | Msa1365660:intron | 55.0% | |
| ! | AAGGTCTGGGGTTCAAACCC+CGG | - | tig0018369:252284-252303 | Msa1365660:intron | 55.0% |
| ! | CCAGCAAACTAGCCGGTTCT+CGG | + | tig0018369:252641-252660 | None:intergenic | 55.0% |
| !! | GAACCGGCTAGTTTGCTGGT+TGG | - | tig0018369:252642-252661 | Msa1365660:CDS | 55.0% |
| AGCCAGACTGCAATACGACG+GGG | + | tig0018369:252674-252693 | None:intergenic | 55.0% | |
| AGGAAAAGGTCCCACAGACC+TGG | + | tig0018369:251564-251583 | None:intergenic | 55.0% | |
| ! | TCTGTGGGACCTTTTCCTGC+TGG | - | tig0018369:251566-251585 | Msa1365660:CDS | 55.0% |
| CCAACTGAGCTAAGCTCACG+AGG | + | tig0018369:252241-252260 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | tig0018369:252238-252257 | Msa1365660:intron | 55.0% | |
| ! | AAGGTCTGGGGTTCAAACCC+CGG | - | tig0018369:252284-252303 | Msa1365660:intron | 55.0% |
| ! | CCAGCAAACTAGCCGGTTCT+CGG | + | tig0018369:252641-252660 | None:intergenic | 55.0% |
| !! | GAACCGGCTAGTTTGCTGGT+TGG | - | tig0018369:252642-252661 | Msa1365660:CDS | 55.0% |
| AGCCAGACTGCAATACGACG+GGG | + | tig0018369:252674-252693 | None:intergenic | 55.0% | |
| !! | CCGAGAACCGGCTAGTTTGC+TGG | - | tig0018369:252638-252657 | Msa1365660:CDS | 60.0% |
| ACCCCCGTCGTATTGCAGTC+TGG | - | tig0018369:252669-252688 | Msa1365660:CDS | 60.0% | |
| GCCAGACTGCAATACGACGG+GGG | + | tig0018369:252673-252692 | None:intergenic | 60.0% | |
| !! | CCGAGAACCGGCTAGTTTGC+TGG | - | tig0018369:252638-252657 | Msa1365660:CDS | 60.0% |
| ACCCCCGTCGTATTGCAGTC+TGG | - | tig0018369:252669-252688 | Msa1365660:CDS | 60.0% | |
| GCCAGACTGCAATACGACGG+GGG | + | tig0018369:252673-252692 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018369 | gene | 251413 | 253101 | 251413 | ID=Msa1365660;Name=Msa1365660 |
| tig0018369 | mRNA | 251413 | 253101 | 251413 | ID=Msa1365660-mRNA-1;Parent=Msa1365660;Name=Msa1365660-mRNA-1;_AED=0.06;_eAED=0.06;_QI=9|1|1|1|1|1|3|113|215 |
| tig0018369 | exon | 251413 | 251642 | 251413 | ID=Msa1365660-mRNA-1:exon:14698;Parent=Msa1365660-mRNA-1 |
| tig0018369 | exon | 252466 | 252699 | 252466 | ID=Msa1365660-mRNA-1:exon:14697;Parent=Msa1365660-mRNA-1 |
| tig0018369 | exon | 252796 | 253101 | 252796 | ID=Msa1365660-mRNA-1:exon:14696;Parent=Msa1365660-mRNA-1 |
| tig0018369 | five_prime_UTR | 253093 | 253101 | 253093 | ID=Msa1365660-mRNA-1:five_prime_utr;Parent=Msa1365660-mRNA-1 |
| tig0018369 | CDS | 252796 | 253092 | 252796 | ID=Msa1365660-mRNA-1:cds;Parent=Msa1365660-mRNA-1 |
| tig0018369 | CDS | 252466 | 252699 | 252466 | ID=Msa1365660-mRNA-1:cds;Parent=Msa1365660-mRNA-1 |
| tig0018369 | CDS | 251526 | 251642 | 251526 | ID=Msa1365660-mRNA-1:cds;Parent=Msa1365660-mRNA-1 |
| tig0018369 | three_prime_UTR | 251413 | 251525 | 251413 | ID=Msa1365660-mRNA-1:three_prime_utr;Parent=Msa1365660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
