AlfalfaGEDB | Msa0605170

M. sativa cultivar zhongmu-4 / Msa0605170

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0016020 GO:0016021 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605170	KEH30380.1	88.966	290	29	1	1	290	34	320	5.38e-174	493

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605170	sp\|Q9XII1\|PDV2_ARATH	43.925	321	132	9	2	290	3	307	9.65e-69	218

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013050	Msa0605170	-0.873755	1.150206e-67	-8.615850e-47
Msa0014410	Msa0605170	0.808384	3.179660e-50	-8.615850e-47
Msa0020630	Msa0605170	0.829881	4.015194e-55	-8.615850e-47
Msa0027540	Msa0605170	0.806963	6.372255e-50	-8.615850e-47
Msa0030380	Msa0605170	0.823224	1.553857e-53	-8.615850e-47
Msa0034560	Msa0605170	-0.801486	8.803761e-49	-8.615850e-47
Msa0038350	Msa0605170	-0.820302	7.369959e-53	-8.615850e-47
Msa0044710	Msa0605170	0.874893	4.728889e-68	-8.615850e-47
Msa0046660	Msa0605170	-0.841887	3.618752e-58	-8.615850e-47
Msa0050720	Msa0605170	0.814385	1.582708e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605170	MtrunA17_Chr4g0034331	88.966	290	29	1	1	290	34	320	4.95e-178	493
Msa0605170	MtrunA17_Chr2g0305561	95.455	154	7	0	137	290	1	154	1.68e-106	306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605170	AT2G16070.2	43.925	321	132	9	2	290	3	307	9.80e-70	218
Msa0605170	AT2G16070.3	47.805	205	90	6	90	290	33	224	3.05e-50	166
Msa0605170	AT2G16070.1	47.805	205	90	6	90	290	33	224	3.05e-50	166

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Find 82 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACAATGGAAGAGGA+AGG	0.601648	4_2:-50918778	Msa0605170:exon
AAAATTAAAACATAAAATAA+GGG	0.363954	4_2:+50916139	None:intergenic
AAACCAACTTCTTCTCCTAA+TGG	0.424275	4_2:-50918694	Msa0605170:CDS
AAAGCAGTGCTCACAGTTGT+TGG	0.459690	4_2:-50916464	Msa0605170:CDS
AAATTAAAACATAAAATAAG+GGG	0.580436	4_2:+50916140	None:intergenic
AAGACGAGGATGCTACTGAT+AGG	0.511739	4_2:-50918654	Msa0605170:CDS
AATAAGCTCAAGGAGTATAA+AGG	0.395809	4_2:-50916779	Msa0605170:CDS
AATTAAAACATAAAATAAGG+GGG	0.653421	4_2:+50916141	None:intergenic
ACAAGACAATGCAAATATCA+TGG	0.493274	4_2:+50918894	None:intergenic
ACAATGGAAGAGGAAGGAAT+AGG	0.454566	4_2:-50918772	Msa0605170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGACAATGCAAATATCA+TGG	+	chr4_2:50915909-50915928	None:intergenic	30.0%
TATTTGCATTGTCTTGTACT+TGG	-	chr4_2:50915912-50915931	Msa0605170:three_prime_UTR	30.0%
AGATTTGACCCATTATTATG+AGG	-	chr4_2:50916280-50916299	Msa0605170:CDS	30.0%
AAATCCAGCCTCATAATAAT+GGG	+	chr4_2:50916291-50916310	None:intergenic	30.0%
TAAATCCAGCCTCATAATAA+TGG	+	chr4_2:50916292-50916311	None:intergenic	30.0%
GTTAAGTGTTTCATACAAAG+AGG	+	chr4_2:50916352-50916371	None:intergenic	30.0%
TTCAACCTAAACCTAAATGT+TGG	-	chr4_2:50916478-50916497	Msa0605170:CDS	30.0%
CTTAATTGCTACCAACATTT+AGG	+	chr4_2:50916492-50916511	None:intergenic	30.0%
CTTGTCCGAATTAAATAATG+CGG	-	chr4_2:50916521-50916540	Msa0605170:CDS	30.0%
ACTCACCGCATTATTTAATT+CGG	+	chr4_2:50916529-50916548	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	50915890	50918932	50915890	ID=Msa0605170;Name=Msa0605170
chr4_2	mRNA	50915890	50918932	50915890	ID=Msa0605170-mRNA-1;Parent=Msa0605170;Name=Msa0605170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=141\|0\|0.66\|0.66\|1\|1\|3\|318\|290
chr4_2	exon	50915890	50916877	50915890	ID=Msa0605170-mRNA-1:exon:12078;Parent=Msa0605170-mRNA-1
chr4_2	exon	50917007	50917014	50917007	ID=Msa0605170-mRNA-1:exon:12077;Parent=Msa0605170-mRNA-1
chr4_2	exon	50918597	50918932	50918597	ID=Msa0605170-mRNA-1:exon:12076;Parent=Msa0605170-mRNA-1
chr4_2	five_prime_UTR	50918792	50918932	50918792	ID=Msa0605170-mRNA-1:five_prime_utr;Parent=Msa0605170-mRNA-1
chr4_2	CDS	50918597	50918791	50918597	ID=Msa0605170-mRNA-1:cds;Parent=Msa0605170-mRNA-1
chr4_2	CDS	50917007	50917014	50917007	ID=Msa0605170-mRNA-1:cds;Parent=Msa0605170-mRNA-1
chr4_2	CDS	50916208	50916877	50916208	ID=Msa0605170-mRNA-1:cds;Parent=Msa0605170-mRNA-1
chr4_2	three_prime_UTR	50915890	50916207	50915890	ID=Msa0605170-mRNA-1:three_prime_utr;Parent=Msa0605170-mRNA-1

Gene Sequence

>Msa0605170

ATGGAAGAGGAAGGAATAGGGTTAGTGTTAGCGAGAGCCACAGAACTTAGGTTGAAGATCAACAACTGCATCCAAAAACCAACTTCTTCTCCTAATGGTCTCCTCGAAGACGATGAAGACGAGGATGCTACTGATAGGCTTCTCAATATTTGCGATGCACTCGAAGCTTTGGAGACTCAGCTTTCTTCTCTGCAGTACATTATGTTCTACAACAACAGCAGCGATACGAAAGAGAAATTGCCTTGGCTGAGATTGAAAACAGTCGTCAAAGTGCTAATTAATAAGCTCAAGGAGTATAAAGGAAAAGATTTGGAAGTGATACATGAAGCTTCCACTTTTGCCAGTGAAACAGTGGAGCCAACCAATGATCTACTACTTCCTCCTTATCCAACCCGCCCTCCATATTCCATGTCTCTTGACAAGCAATATCTGTCACAGATCCCTTCTGTCAATAAGTCCGGTCGCAATGGATTAATCACACTTGATAATGTGATTGAGGCTAAAAAGAATCCAAATGAAAAAGAGCAAAATCATGTTGAAGACGGGGCTAAAAATTCAAGAAAAGGTTTACGATTTTTTATAACTTCTGCAGCAAAAGCAGTGCTCACAGTTGTTGGTGTGGTATCAATATTGAGTATGTCAGGATTTGGTCCTAATTTGCAGAAGGTTCGTTGGAATGTACAACGCAGGCATCACAGACTAGAAAATGAGAATGGGAGATCTACCACTGAAAATAAGGGTGATGGACAGTGTCCACCTGGTAGAGTTTTGGTGCTGGAAAATGGGGAGGCTCGATGTCTCGTGAAAGAGAGGGTTGAAATTCCATTTTCAGCTGTTGCTGCAACACCTGATATAAACTATGGATGTGGTTAA

Protein sequence

>Msa0605170

MEEEGIGLVLARATELRLKINNCIQKPTSSPNGLLEDDEDEDATDRLLNICDALEALETQLSSLQYIMFYNNSSDTKEKLPWLRLKTVVKVLINKLKEYKGKDLEVIHEASTFASETVEPTNDLLLPPYPTRPPYSMSLDKQYLSQIPSVNKSGRNGLITLDNVIEAKKNPNEKEQNHVEDGAKNSRKGLRFFITSAAKAVLTVVGVVSILSMSGFGPNLQKVRWNVQRRHHRLENENGRSTTENKGDGQCPPGRVLVLENGEARCLVKERVEIPFSAVAATPDINYGCG*