Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366590 | XP_039684256.1 | 98.776 | 245 | 3 | 0 | 1 | 245 | 1 | 245 | 1.86e-177 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366590 | sp|Q39244|RU1A_ARATH | 73.577 | 246 | 56 | 4 | 2 | 245 | 12 | 250 | 1.33e-123 | 354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366590 | B7FJ52 | 98.367 | 245 | 4 | 0 | 1 | 245 | 1 | 245 | 3.62e-177 | 496 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1082010 | Msa1366590 | 0.879980 | 7.997371e-70 | -8.615850e-47 |
| Msa1165800 | Msa1366590 | 0.805469 | 1.314848e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366590 | MtrunA17_Chr4g0044291 | 97.959 | 245 | 4 | 1 | 1 | 245 | 1 | 244 | 2.02e-178 | 489 |
| Msa1366590 | MtrunA17_Chr7g0269401 | 99.371 | 159 | 1 | 0 | 87 | 245 | 3 | 161 | 2.36e-114 | 324 |
| Msa1366590 | MtrunA17_Chr5g0432171 | 60.338 | 237 | 83 | 4 | 11 | 245 | 7 | 234 | 1.88e-88 | 261 |
| Msa1366590 | MtrunA17_Chr1g0176901 | 58.065 | 186 | 68 | 3 | 61 | 245 | 2 | 178 | 2.02e-61 | 191 |
| Msa1366590 | MtrunA17_Chr7g0269411 | 94.505 | 91 | 5 | 0 | 1 | 91 | 1 | 91 | 3.98e-59 | 182 |
| Msa1366590 | MtrunA17_Chr4g0044321 | 88.298 | 94 | 11 | 0 | 1 | 94 | 1 | 94 | 5.35e-51 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366590 | AT2G47580.1 | 73.577 | 246 | 56 | 4 | 2 | 245 | 12 | 250 | 1.35e-124 | 354 |
| Msa1366590 | AT2G30260.1 | 58.475 | 236 | 87 | 3 | 11 | 245 | 7 | 232 | 4.88e-98 | 286 |
| Msa1366590 | AT1G06960.1 | 57.203 | 236 | 87 | 3 | 11 | 245 | 7 | 229 | 1.16e-89 | 265 |
| Msa1366590 | AT1G06960.3 | 56.522 | 207 | 76 | 3 | 40 | 245 | 7 | 200 | 4.06e-75 | 226 |
| Msa1366590 | AT2G30260.2 | 59.504 | 121 | 49 | 0 | 11 | 131 | 7 | 127 | 2.95e-50 | 162 |
| Msa1366590 | AT1G06960.4 | 53.125 | 160 | 61 | 3 | 87 | 245 | 4 | 150 | 1.63e-47 | 154 |
| Msa1366590 | AT1G06960.2 | 58.120 | 117 | 40 | 1 | 11 | 118 | 7 | 123 | 1.58e-44 | 147 |
| Msa1366590 | AT1G06960.5 | 65.979 | 97 | 33 | 0 | 11 | 107 | 7 | 103 | 7.90e-44 | 145 |
| Msa1366590 | AT1G06960.6 | 57.471 | 87 | 28 | 1 | 40 | 117 | 7 | 93 | 3.26e-30 | 110 |
Find 78 sgRNAs with CRISPR-Local
Find 385 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATAGTTTATCTTCTTAA+TGG | 0.142279 | tig0018459:+140009 | Msa1366590:three_prime_UTR |
| GGAATTGCCTTTGTGGAATA+TGG | 0.226538 | tig0018459:+139815 | Msa1366590:CDS |
| CACCGCCCGGATAAGGTATC+TGG | 0.248229 | tig0018459:-139643 | None:intergenic |
| TGAATAAAGAGAATATTATT+TGG | 0.260734 | tig0018459:-139698 | None:intergenic |
| AGCTTCTCCGGCTGGCTCAT+AGG | 0.273692 | tig0018459:+134997 | Msa1366590:five_prime_UTR |
| CTTCTGCTTCTAATGCTCTT+AGG | 0.307963 | tig0018459:+135367 | Msa1366590:CDS |
| GCCTTTCTTGCAACATTAGT+TGG | 0.336989 | tig0018459:-139944 | None:intergenic |
| AGATAAACTATTGCAATAGA+TGG | 0.342534 | tig0018459:-140000 | None:intergenic |
| TACCATGGGCTTATCATAGA+AGG | 0.348156 | tig0018459:-135406 | None:intergenic |
| CAGCTAAATTAGCGTCGTTT+TGG | 0.367566 | tig0018459:-139288 | None:intergenic |
| TCCAACTAATGTTGCAAGAA+AGG | 0.373108 | tig0018459:+139943 | Msa1366590:three_prime_UTR |
| CCTGCTTATGCTGGTGGTTA+CGG | 0.390910 | tig0018459:+139325 | Msa1366590:CDS |
| CACCAGCATAAGCAGGATTT+AGG | 0.401811 | tig0018459:-139318 | None:intergenic |
| TATTCCACAAAGGCAATTCC+TGG | 0.402314 | tig0018459:-139812 | None:intergenic |
| GTTATCCCAGATACCTTATC+CGG | 0.404748 | tig0018459:+139637 | Msa1366590:intron |
| ATGCTGTTTCTTCAATATCC+TGG | 0.406930 | tig0018459:+139758 | Msa1366590:CDS |
| TTTCAAGACTCTGAAACATA+AGG | 0.428186 | tig0018459:+135314 | Msa1366590:CDS |
| GACTTTGCACCGCCCGGATA+AGG | 0.431492 | tig0018459:-139650 | None:intergenic |
| CTGTTTACCCGCAGCAGCCT+TGG | 0.433204 | tig0018459:+140032 | Msa1366590:three_prime_UTR |
| TTTGCATAAGTTATCAACAT+AGG | 0.436644 | tig0018459:-139902 | None:intergenic |
| TTTGGTGGTGCAGGAGCCTC+AGG | 0.448624 | tig0018459:-139680 | None:intergenic |
| GACGCTAATTTAGCTGGAAC+TGG | 0.449548 | tig0018459:+139295 | Msa1366590:CDS |
| CGGCAAAGGGTTAGCTTCTC+CGG | 0.456908 | tig0018459:+134985 | Msa1366590:five_prime_UTR |
| GCAATCCACAGTGGCTATGC+AGG | 0.457768 | tig0018459:+139847 | Msa1366590:CDS |
| AGAATATTATTTGGTGGTGC+AGG | 0.462021 | tig0018459:-139689 | None:intergenic |
| GCTTCTCCGGCTGGCTCATA+GGG | 0.470630 | tig0018459:+134998 | Msa1366590:five_prime_UTR |
| TCTTCAATATCCTGGATTCA+AGG | 0.474103 | tig0018459:+139766 | Msa1366590:CDS |
| GTTGAGGTTGTTGATGTAGA+TGG | 0.478062 | tig0018459:-135128 | None:intergenic |
| TTGCATAAGTTATCAACATA+GGG | 0.478071 | tig0018459:-139901 | None:intergenic |
| ATCATGGGAGTGGTCTCGTT+GGG | 0.478382 | tig0018459:-139728 | None:intergenic |
| CAAAACGACGCTAATTTAGC+TGG | 0.481431 | tig0018459:+139289 | Msa1366590:CDS |
| TAAGCCAGGAATTGCCTTTG+TGG | 0.487844 | tig0018459:+139808 | Msa1366590:CDS |
| TGGATTCAAGGAAGTTAGAA+TGG | 0.488429 | tig0018459:+139778 | Msa1366590:CDS |
| GAAACATAAGGGTCAAGCTT+GGG | 0.490093 | tig0018459:+135326 | Msa1366590:CDS |
| AAAGGGTTAGCTTCTCCGGC+TGG | 0.494890 | tig0018459:+134989 | Msa1366590:five_prime_UTR |
| TTCAAGACTCTGAAACATAA+GGG | 0.501324 | tig0018459:+135315 | Msa1366590:CDS |
| ATTCTAACTTCCTTGAATCC+AGG | 0.502372 | tig0018459:-139776 | None:intergenic |
| GGCCTAAATCCTGCTTATGC+TGG | 0.504297 | tig0018459:+139316 | Msa1366590:CDS |
| AGAGTGAGGTTCTTCACGAC+GGG | 0.507364 | tig0018459:-135032 | None:intergenic |
| TGCAGAGAATACAGTATGCC+AGG | 0.509126 | tig0018459:+138710 | Msa1366590:intron |
| AGAATGGTTGAAGCTAAGCC+AGG | 0.509824 | tig0018459:+139794 | Msa1366590:CDS |
| AGCAAGGACTTTGCACCGCC+CGG | 0.516963 | tig0018459:-139656 | None:intergenic |
| ACCATGGGCTTATCATAGAA+GGG | 0.521161 | tig0018459:-135405 | None:intergenic |
| ACTAATGTTGCAAGAAAGGC+AGG | 0.522718 | tig0018459:+139947 | Msa1366590:three_prime_UTR |
| AAACAGCATTTGAAGCATCA+TGG | 0.523248 | tig0018459:-139744 | None:intergenic |
| AACAGCATTTGAAGCATCAT+GGG | 0.537484 | tig0018459:-139743 | None:intergenic |
| TGAAACATAAGGGTCAAGCT+TGG | 0.538887 | tig0018459:+135325 | Msa1366590:CDS |
| CATCATGGGAGTGGTCTCGT+TGG | 0.539108 | tig0018459:-139729 | None:intergenic |
| ACAAGAACCAAGGCTGCTGC+GGG | 0.544665 | tig0018459:-140039 | None:intergenic |
| GTGGCTATGCAGGCGCTGCA+AGG | 0.546739 | tig0018459:+139857 | Msa1366590:CDS |
| CGAAGATGAAAGAGAGAGTG+AGG | 0.551277 | tig0018459:-135046 | None:intergenic |
| TACAAGAACCAAGGCTGCTG+CGG | 0.558036 | tig0018459:-140040 | None:intergenic |
| ATAAAGAGAATATTATTTGG+TGG | 0.560203 | tig0018459:-139695 | None:intergenic |
| CTAAATCCTGCTTATGCTGG+TGG | 0.563875 | tig0018459:+139319 | Msa1366590:CDS |
| CCGTAACCACCAGCATAAGC+AGG | 0.564623 | tig0018459:-139325 | None:intergenic |
| TGCAGGAGCCTCAGGTAGCA+AGG | 0.570195 | tig0018459:-139672 | None:intergenic |
| CATTTGAAGCATCATGGGAG+TGG | 0.573182 | tig0018459:-139738 | None:intergenic |
| TATGACATCAGATTTAGTCC+TGG | 0.590587 | tig0018459:-138728 | None:intergenic |
| CCCCTTCTATGATAAGCCCA+TGG | 0.593341 | tig0018459:+135404 | Msa1366590:CDS |
| TCGAAATCTCAACACAAACA+TGG | 0.593765 | tig0018459:+135066 | Msa1366590:exon |
| TCAATTTGGGAAGATACTTG+AGG | 0.598924 | tig0018459:+135284 | Msa1366590:CDS |
| CGAAAGAGGCACGATGACAA+AGG | 0.607215 | tig0018459:+138787 | Msa1366590:CDS |
| ACCGCCCGGATAAGGTATCT+GGG | 0.612135 | tig0018459:-139642 | None:intergenic |
| TGCAAAGTCCTTGCTACCTG+AGG | 0.615525 | tig0018459:+139664 | Msa1366590:CDS |
| AATGCTCTTAGGCAAATGCA+AGG | 0.618597 | tig0018459:+135378 | Msa1366590:CDS |
| GGTAAACCCTATGAGCCAGC+CGG | 0.619652 | tig0018459:-135004 | None:intergenic |
| TGGTGGTTACGGTGCTACTC+CGG | 0.627577 | tig0018459:+139336 | Msa1366590:CDS |
| GAGAGTGAGGTTCTTCACGA+CGG | 0.628296 | tig0018459:-135033 | None:intergenic |
| CAGCGCCTGCATAGCCACTG+TGG | 0.631864 | tig0018459:-139852 | None:intergenic |
| CCATGGGCTTATCATAGAAG+GGG | 0.644197 | tig0018459:-135404 | None:intergenic |
| TTATCCCAGATACCTTATCC+GGG | 0.647182 | tig0018459:+139638 | Msa1366590:CDS |
| CTCATCTCCATATTCCACAA+AGG | 0.648390 | tig0018459:-139822 | None:intergenic |
| CTACAATCATACAAGAACCA+AGG | 0.654648 | tig0018459:-140049 | None:intergenic |
| GATGTCATAGCAAAAGCAGA+CGG | 0.699134 | tig0018459:+138742 | Msa1366590:CDS |
| GAGTGAGGTTCTTCACGACG+GGG | 0.717694 | tig0018459:-135031 | None:intergenic |
| AGTGAGGTTCTTCACGACGG+GGG | 0.717916 | tig0018459:-135030 | None:intergenic |
| TCCCAGATACCTTATCCGGG+CGG | 0.741643 | tig0018459:+139641 | Msa1366590:CDS |
| AGATGAGATGCAATCCACAG+TGG | 0.772288 | tig0018459:+139838 | Msa1366590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAATAAATAAATTA+CGG | + | tig0018459:136987-137006 | Msa1366590:intron | 0.0% |
| !! | CTAATGAAAAATTGATATTA+TGG | - | tig0018459:135187-135206 | None:intergenic | 15.0% |
| !!! | TTTTTTCAGTTAGAATTTTT+TGG | + | tig0018459:135490-135509 | Msa1366590:intron | 15.0% |
| !!! | TTTTTCAGTTAGAATTTTTT+GGG | + | tig0018459:135491-135510 | Msa1366590:intron | 15.0% |
| !!! | TTCTATCATAAAACATATTT+TGG | - | tig0018459:136013-136032 | None:intergenic | 15.0% |
| !! | ATTAAGTTACATAAATTTCA+AGG | - | tig0018459:136322-136341 | None:intergenic | 15.0% |
| !! | TTAAATTACATTTATAGTGA+AGG | - | tig0018459:136924-136943 | None:intergenic | 15.0% |
| !! | TTCACTATAAATGTAATTTA+AGG | + | tig0018459:136923-136942 | Msa1366590:intron | 15.0% |
| !! | TCACTATAAATGTAATTTAA+GGG | + | tig0018459:136924-136943 | Msa1366590:intron | 15.0% |
| !!! | TGATTTAACAAAACATTTTA+TGG | - | tig0018459:137016-137035 | None:intergenic | 15.0% |
| !! | TACTAAAAAAGGAATATATT+GGG | - | tig0018459:137539-137558 | None:intergenic | 15.0% |
| !! | ATATGTATATCTACTAAAAA+AGG | - | tig0018459:137550-137569 | None:intergenic | 15.0% |
| !! | AAATAAAATTATGTGATGTA+TGG | + | tig0018459:137827-137846 | Msa1366590:intron | 15.0% |
| !! | AAAAAACCTAAGAAATATAT+TGG | - | tig0018459:138967-138986 | None:intergenic | 15.0% |
| !! | GCATAAAAAATATCATTTAT+TGG | - | tig0018459:139102-139121 | None:intergenic | 15.0% |
| !! | TGAATAAAGAGAATATTATT+TGG | - | tig0018459:139701-139720 | None:intergenic | 15.0% |
| !! | TTCTTATAAAAATCTGTATT+TGG | + | tig0018459:140092-140111 | Msa1366590:three_prime_UTR | 15.0% |
| !!! | ATTGTTATCTTTTTTTATCA+TGG | + | tig0018459:140118-140137 | Msa1366590:three_prime_UTR | 15.0% |
| !!! | TTAACTAAGTGTTTTGTTTT+TGG | + | tig0018459:136294-136313 | Msa1366590:intron | 20.0% |
| !!! | TAACTAAGTGTTTTGTTTTT+GGG | + | tig0018459:136295-136314 | Msa1366590:intron | 20.0% |
| !! | GTAAGAAGAAGAATATATTT+AGG | - | tig0018459:136500-136519 | None:intergenic | 20.0% |
| !!! | AAATAGGAAGATATTTTTCT+TGG | + | tig0018459:136683-136702 | Msa1366590:intron | 20.0% |
| !!! | TATTTTTCTTGGAATGATAA+TGG | + | tig0018459:136694-136713 | Msa1366590:intron | 20.0% |
| !! | AGAAAAAAAGTCATGATAAA+TGG | - | tig0018459:137066-137085 | None:intergenic | 20.0% |
| !!! | ATACTCTTATTTGATGTTAA+GGG | - | tig0018459:137142-137161 | None:intergenic | 20.0% |
| !! | AATATATCTTGATGTACATT+TGG | + | tig0018459:137183-137202 | Msa1366590:intron | 20.0% |
| !! | ATATATCTTGATGTACATTT+GGG | + | tig0018459:137184-137203 | Msa1366590:intron | 20.0% |
| !! | ATTCAACAAAATTATAGTGA+AGG | - | tig0018459:137414-137433 | None:intergenic | 20.0% |
| !! | ACTAAAAAAGGAATATATTG+GGG | - | tig0018459:137538-137557 | None:intergenic | 20.0% |
| !! | CTACTAAAAAAGGAATATAT+TGG | - | tig0018459:137540-137559 | None:intergenic | 20.0% |
| !! | ACAAATCAAGCAATTATTAT+CGG | - | tig0018459:137948-137967 | None:intergenic | 20.0% |
| !! | AGATTTGAAAAATATCAAAC+AGG | - | tig0018459:138054-138073 | None:intergenic | 20.0% |
| !!! | AAACAAATCTATTTTAGCAT+GGG | - | tig0018459:138118-138137 | None:intergenic | 20.0% |
| !!! | ATAGATTAGAGATTTGTTAT+GGG | - | tig0018459:138319-138338 | None:intergenic | 20.0% |
| !!! | AATAGATTAGAGATTTGTTA+TGG | - | tig0018459:138320-138339 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGTTGATGTTGT+TGG | + | tig0018459:138988-139007 | Msa1366590:intron | 20.0% |
| !!! | TTTTTTTTGTTGATGTTGTT+GGG | + | tig0018459:138989-139008 | Msa1366590:intron | 20.0% |
| !! | TAATACATTAACAATGAAGA+AGG | + | tig0018459:139069-139088 | Msa1366590:intron | 20.0% |
| !!! | TTGTAGTTTATTTTAGACAA+TGG | + | tig0018459:139377-139396 | Msa1366590:intron | 20.0% |
| !!! | TCATAATTTTAACCGTTTTA+TGG | + | tig0018459:139455-139474 | Msa1366590:intron | 20.0% |
| !! | ATAAAGAGAATATTATTTGG+TGG | - | tig0018459:139698-139717 | None:intergenic | 20.0% |
| !!! | CAGATTTATTTTACATTTTC+TGG | + | tig0018459:140173-140192 | Msa1366590:three_prime_UTR | 20.0% |
| ! | AACGAAAAAATCAAAATCGA+CGG | + | tig0018459:135148-135167 | Msa1366590:CDS | 25.0% |
| !!! | TTTTGTTTTCTCAAATCCAA+TGG | - | tig0018459:135646-135665 | None:intergenic | 25.0% |
| ! | TTGGATTTGAGAAAACAAAA+AGG | + | tig0018459:135646-135665 | Msa1366590:intron | 25.0% |
| ! | GAAAACAAAAAGGAATGTTT+CGG | + | tig0018459:135656-135675 | Msa1366590:intron | 25.0% |
| !! | ATTGTGTTCTATGCTATTTA+TGG | + | tig0018459:135834-135853 | Msa1366590:intron | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | + | tig0018459:135986-136005 | Msa1366590:intron | 25.0% |
| !!! | AACTAAGTGTTTTGTTTTTG+GGG | + | tig0018459:136296-136315 | Msa1366590:intron | 25.0% |
| ! | ATTCAACAAAATTATAGCGA+AGG | - | tig0018459:136370-136389 | None:intergenic | 25.0% |
| ! | AGAAGAAGAATATATTTAGG+TGG | - | tig0018459:136497-136516 | None:intergenic | 25.0% |
| ! | AACAAAGAGAATTTATTCCA+CGG | - | tig0018459:136625-136644 | None:intergenic | 25.0% |
| !! | TATTTTGTTCATTGAGTGTA+GGG | - | tig0018459:136668-136687 | None:intergenic | 25.0% |
| ! | TTGATCAAAATTGAACTTGA+TGG | - | tig0018459:136820-136839 | None:intergenic | 25.0% |
| !! | ATGTAATTTAAGGGTATGTT+AGG | + | tig0018459:136933-136952 | Msa1366590:intron | 25.0% |
| !! | CATACTCTTATTTGATGTTA+AGG | - | tig0018459:137143-137162 | None:intergenic | 25.0% |
| ! | CTTAACATCAAATAAGAGTA+TGG | + | tig0018459:137141-137160 | Msa1366590:intron | 25.0% |
| !! | AAATAAGAGTATGGTTTAGA+GGG | + | tig0018459:137150-137169 | Msa1366590:intron | 25.0% |
| ! | AAGATTGACCATTAATACAT+AGG | + | tig0018459:137477-137496 | Msa1366590:intron | 25.0% |
| !! | AAAAAATTGTTGTGTTGTTG+TGG | + | tig0018459:137603-137622 | Msa1366590:intron | 25.0% |
| ! | CAATTAAAATAAAGCTCCAA+CGG | - | tig0018459:137972-137991 | None:intergenic | 25.0% |
| !!! | ATTTTAATTGGTCATATGCA+TGG | + | tig0018459:137982-138001 | Msa1366590:intron | 25.0% |
| ! | ACGAAAAATAACACATATCA+CGG | - | tig0018459:138021-138040 | None:intergenic | 25.0% |
| !!! | AACAAATCTATTTTAGCATG+GGG | - | tig0018459:138117-138136 | None:intergenic | 25.0% |
| !!! | CAAACAAATCTATTTTAGCA+TGG | - | tig0018459:138119-138138 | None:intergenic | 25.0% |
| !! | CATGCTAAAATAGATTTGTT+TGG | + | tig0018459:138117-138136 | Msa1366590:intron | 25.0% |
| !!! | TAGATTAGAGATTTGTTATG+GGG | - | tig0018459:138318-138337 | None:intergenic | 25.0% |
| ! | TTATTAATTGGTATCACAAC+TGG | - | tig0018459:138416-138435 | None:intergenic | 25.0% |
| ! | GTGCTTAGATACTTATTAAT+TGG | - | tig0018459:138428-138447 | None:intergenic | 25.0% |
| ! | TTGTCTATATCACAATATGA+GGG | - | tig0018459:138576-138595 | None:intergenic | 25.0% |
| !!! | AACTTTTTGTTTTGTCTGTT+TGG | + | tig0018459:138599-138618 | Msa1366590:intron | 25.0% |
| ! | ATTTCCATAAAACTATTCTC+AGG | + | tig0018459:138658-138677 | Msa1366590:intron | 25.0% |
| ! | TGTTAAGTTTAAGCTCATAT+TGG | + | tig0018459:138859-138878 | Msa1366590:intron | 25.0% |
| ! | AAAAGGCCAATATATTTCTT+AGG | + | tig0018459:138958-138977 | Msa1366590:intron | 25.0% |
| !!! | TTTTTTTGTTGATGTTGTTG+GGG | + | tig0018459:138990-139009 | Msa1366590:intron | 25.0% |
| !! | GCAACTCTTTTAATGAATAT+CGG | + | tig0018459:139185-139204 | Msa1366590:intron | 25.0% |
| !!! | TATCCAATTACATTTTTCAG+CGG | + | tig0018459:139249-139268 | Msa1366590:intron | 25.0% |
| ! | TTAGACAATGGTCATATTAT+AGG | + | tig0018459:139389-139408 | Msa1366590:intron | 25.0% |
| ! | CGAGAAAAAATACCATAAAA+CGG | - | tig0018459:139470-139489 | None:intergenic | 25.0% |
| ! | TTGCATAAGTTATCAACATA+GGG | - | tig0018459:139904-139923 | None:intergenic | 25.0% |
| ! | TTTGCATAAGTTATCAACAT+AGG | - | tig0018459:139905-139924 | None:intergenic | 25.0% |
| ! | AGATAAACTATTGCAATAGA+TGG | - | tig0018459:140003-140022 | None:intergenic | 25.0% |
| ! | GCAATAGTTTATCTTCTTAA+TGG | + | tig0018459:140009-140028 | Msa1366590:three_prime_UTR | 25.0% |
| ! | AAAAAAGAGATCATGTATCT+GGG | - | tig0018459:140242-140261 | None:intergenic | 25.0% |
| !!! | CGATTTTGATTTTTTCGTTG+AGG | - | tig0018459:135147-135166 | None:intergenic | 30.0% |
| !! | TTTCAAGACTCTGAAACATA+AGG | + | tig0018459:135314-135333 | Msa1366590:CDS | 30.0% |
| !! | TTCAAGACTCTGAAACATAA+GGG | + | tig0018459:135315-135334 | Msa1366590:CDS | 30.0% |
| AACAATCTTCAACATGACAT+AGG | + | tig0018459:135575-135594 | Msa1366590:intron | 30.0% | |
| ! | TTCTCTAGCTGAATTTTGTT+TGG | + | tig0018459:135599-135618 | Msa1366590:intron | 30.0% |
| CTCCTCTATAGATATTATGT+TGG | + | tig0018459:135716-135735 | Msa1366590:intron | 30.0% | |
| GACCAACATAATATCTATAG+AGG | - | tig0018459:135721-135740 | None:intergenic | 30.0% | |
| TTGCTAAATGAAAATGCAGA+AGG | + | tig0018459:135741-135760 | Msa1366590:intron | 30.0% | |
| ! | GAATAGGGAGATATTTTTCT+TGG | + | tig0018459:136149-136168 | Msa1366590:intron | 30.0% |
| ! | TATTTTTCTTGGAAGGATAG+TGG | + | tig0018459:136160-136179 | Msa1366590:intron | 30.0% |
| TATTCTTCTTCTTACTGTGA+AGG | + | tig0018459:136505-136524 | Msa1366590:intron | 30.0% | |
| ! | ATTTTGTTCATTGAGTGTAG+GGG | - | tig0018459:136667-136686 | None:intergenic | 30.0% |
| ! | CTATTTTGTTCATTGAGTGT+AGG | - | tig0018459:136669-136688 | None:intergenic | 30.0% |
| CTACACTCAATGAACAAAAT+AGG | + | tig0018459:136667-136686 | Msa1366590:intron | 30.0% | |
| TAAATATGACAAGTCGTACT+CGG | - | tig0018459:136780-136799 | None:intergenic | 30.0% | |
| ! | AATTTAAGGGTATGTTAGGA+TGG | + | tig0018459:136937-136956 | Msa1366590:intron | 30.0% |
| ! | CAAATAAGAGTATGGTTTAG+AGG | + | tig0018459:137149-137168 | Msa1366590:intron | 30.0% |
| !! | TTAGCCTTTTTGTCTTTGAT+TGG | + | tig0018459:137433-137452 | Msa1366590:intron | 30.0% |
| ! | TAGCCTTTTTGTCTTTGATT+GGG | + | tig0018459:137434-137453 | Msa1366590:intron | 30.0% |
| TTACCCAATCAAAGACAAAA+AGG | - | tig0018459:137440-137459 | None:intergenic | 30.0% | |
| TGTATTAATGGTCAATCTTG+TGG | - | tig0018459:137476-137495 | None:intergenic | 30.0% | |
| ATTGACCATTAATACATAGG+CGG | + | tig0018459:137480-137499 | Msa1366590:intron | 30.0% | |
| AATCTTTGAATCACGACTTT+GGG | - | tig0018459:137680-137699 | None:intergenic | 30.0% | |
| AAATCTTTGAATCACGACTT+TGG | - | tig0018459:137681-137700 | None:intergenic | 30.0% | |
| TGTTGTGAACAACTACTAAT+AGG | + | tig0018459:137739-137758 | Msa1366590:intron | 30.0% | |
| TGATGTATGGTCTATCTTAA+TGG | + | tig0018459:137840-137859 | Msa1366590:intron | 30.0% | |
| !!! | CGTTGGAGCTTTATTTTAAT+TGG | + | tig0018459:137970-137989 | Msa1366590:intron | 30.0% |
| CGAAAAATAACACATATCAC+GGG | - | tig0018459:138020-138039 | None:intergenic | 30.0% | |
| !!! | ATATGTGTTATTTTTCGTGC+TGG | + | tig0018459:138023-138042 | Msa1366590:intron | 30.0% |
| AGAGAAAAAATTCATGTTGC+TGG | - | tig0018459:138077-138096 | None:intergenic | 30.0% | |
| !!! | ACAAATCTATTTTAGCATGG+GGG | - | tig0018459:138116-138135 | None:intergenic | 30.0% |
| AGACAAGTATCTAAGTACTT+AGG | + | tig0018459:138199-138218 | Msa1366590:intron | 30.0% | |
| GACAAGTATCTAAGTACTTA+GGG | + | tig0018459:138200-138219 | Msa1366590:intron | 30.0% | |
| ATCAAGTAGTATGGAATGTT+TGG | - | tig0018459:138281-138300 | None:intergenic | 30.0% | |
| AGGGATTATGATAGAGATTT+GGG | - | tig0018459:138557-138576 | None:intergenic | 30.0% | |
| GTTGTCTATATCACAATATG+AGG | - | tig0018459:138577-138596 | None:intergenic | 30.0% | |
| ! | ACGTTTTCTCTTCAAAATGA+GGG | + | tig0018459:138904-138923 | Msa1366590:intron | 30.0% |
| !!! | TTTTTTGTTGATGTTGTTGG+GGG | + | tig0018459:138991-139010 | Msa1366590:intron | 30.0% |
| !! | ATCCAATTACATTTTTCAGC+GGG | + | tig0018459:139250-139269 | Msa1366590:intron | 30.0% |
| !!! | TATGGTATTTTTTCTCGAAC+TGG | + | tig0018459:139473-139492 | Msa1366590:intron | 30.0% |
| ! | GTATGTTTTCTGATAAAAGC+TGG | + | tig0018459:139495-139514 | Msa1366590:intron | 30.0% |
| TTCTATAATACACAGAAGCA+CGG | + | tig0018459:139569-139588 | Msa1366590:intron | 30.0% | |
| !! | TTATCAACATAGGGTTTTGT+GGG | - | tig0018459:139895-139914 | None:intergenic | 30.0% |
| ! | TGTCATGCATTTTTCTTGTT+TGG | + | tig0018459:140206-140225 | Msa1366590:three_prime_UTR | 30.0% |
| !! | GTCATGCATTTTTCTTGTTT+GGG | + | tig0018459:140207-140226 | Msa1366590:three_prime_UTR | 30.0% |
| !! | TCATGCATTTTTCTTGTTTG+GGG | + | tig0018459:140208-140227 | Msa1366590:three_prime_UTR | 30.0% |
| AAAAAGAGATCATGTATCTG+GGG | - | tig0018459:140241-140260 | None:intergenic | 30.0% | |
| CAAAAAAGAGATCATGTATC+TGG | - | tig0018459:140243-140262 | None:intergenic | 30.0% | |
| TCGAAATCTCAACACAAACA+TGG | + | tig0018459:135066-135085 | Msa1366590:exon | 35.0% | |
| !! | TGTAGATGGTCATGTTTTGA+GGG | - | tig0018459:135117-135136 | None:intergenic | 35.0% |
| ! | ATGTAGATGGTCATGTTTTG+AGG | - | tig0018459:135118-135137 | None:intergenic | 35.0% |
| !! | ACGCTGTTTTCAGTCAATTT+GGG | + | tig0018459:135271-135290 | Msa1366590:CDS | 35.0% |
| TCAATTTGGGAAGATACTTG+AGG | + | tig0018459:135284-135303 | Msa1366590:CDS | 35.0% | |
| AGAGCATATGATAGTACCAT+GGG | - | tig0018459:135423-135442 | None:intergenic | 35.0% | |
| ! | AAGAGCATATGATAGTACCA+TGG | - | tig0018459:135424-135443 | None:intergenic | 35.0% |
| TAGAATAGTGAACATGCCAT+TGG | + | tig0018459:135627-135646 | Msa1366590:intron | 35.0% | |
| GCTATTTATCAGATCACTAG+AGG | + | tig0018459:135921-135940 | Msa1366590:intron | 35.0% | |
| ATTTATCAGATCACTAGAGG+TGG | + | tig0018459:135924-135943 | Msa1366590:intron | 35.0% | |
| AAACTTTATCCCACTAGATG+GGG | - | tig0018459:136067-136086 | None:intergenic | 35.0% | |
| CAAACTTTATCCCACTAGAT+GGG | - | tig0018459:136068-136087 | None:intergenic | 35.0% | |
| TATTCTGTTCAATGAGGGAA+GGG | - | tig0018459:136134-136153 | None:intergenic | 35.0% | |
| TTCCCTCATTGAACAGAATA+GGG | + | tig0018459:136134-136153 | Msa1366590:intron | 35.0% | |
| ! | AGGGAGATATTTTTCTTGGA+AGG | + | tig0018459:136153-136172 | Msa1366590:intron | 35.0% |
| ! | GTGGATTTTAGACATAGTGT+AGG | + | tig0018459:136179-136198 | Msa1366590:intron | 35.0% |
| AAATAGCAAAACTGATGCCA+AGG | + | tig0018459:136210-136229 | Msa1366590:intron | 35.0% | |
| !!! | AACATGAAAGTCACTTTTGC+CGG | - | tig0018459:136583-136602 | None:intergenic | 35.0% |
| AGCTAAGTTAACTATATCCG+TGG | + | tig0018459:136605-136624 | Msa1366590:intron | 35.0% | |
| AGATAGTAAAACTGATGCCA+AGG | + | tig0018459:136749-136768 | Msa1366590:intron | 35.0% | |
| CATATTTATCCCCAATGTCA+AGG | + | tig0018459:136792-136811 | Msa1366590:intron | 35.0% | |
| ACTAAATACAGACTTGTACG+TGG | + | tig0018459:136854-136873 | Msa1366590:intron | 35.0% | |
| TTGACTGTGTCTGATGTTTA+GGG | + | tig0018459:136897-136916 | Msa1366590:intron | 35.0% | |
| TTGATGTTAAGGGTCTGTTT+AGG | - | tig0018459:137132-137151 | None:intergenic | 35.0% | |
| ! | TATGTTTGGGAATTGGGTTT+TGG | - | tig0018459:137351-137370 | None:intergenic | 35.0% |
| TAATCTCATGGCCATTCTTA+CGG | - | tig0018459:137387-137406 | None:intergenic | 35.0% | |
| AAGATCCGCCTATGTATTAA+TGG | - | tig0018459:137488-137507 | None:intergenic | 35.0% | |
| GAATCAATTCCTGAAACTCT+GGG | - | tig0018459:137647-137666 | None:intergenic | 35.0% | |
| AGAATCAATTCCTGAAACTC+TGG | - | tig0018459:137648-137667 | None:intergenic | 35.0% | |
| ATCTTTGAATCACGACTTTG+GGG | - | tig0018459:137679-137698 | None:intergenic | 35.0% | |
| GTATGGTCTATCTTAATGGA+TGG | + | tig0018459:137844-137863 | Msa1366590:intron | 35.0% | |
| !!! | TATTTTAGCATGGGGGAAAA+TGG | - | tig0018459:138109-138128 | None:intergenic | 35.0% |
| !! | TGTTTGGTGGTGTAATTAAG+TGG | - | tig0018459:138265-138284 | None:intergenic | 35.0% |
| AAGTAGTATGGAATGTTTGG+TGG | - | tig0018459:138278-138297 | None:intergenic | 35.0% | |
| ACATTCCATACTACTTGATG+TGG | + | tig0018459:138282-138301 | Msa1366590:intron | 35.0% | |
| CATTCCATACTACTTGATGT+GGG | + | tig0018459:138283-138302 | Msa1366590:intron | 35.0% | |
| ATAGAGATTTGGGCATTATG+GGG | - | tig0018459:138547-138566 | None:intergenic | 35.0% | |
| GATAGAGATTTGGGCATTAT+GGG | - | tig0018459:138548-138567 | None:intergenic | 35.0% | |
| TGATAGAGATTTGGGCATTA+TGG | - | tig0018459:138549-138568 | None:intergenic | 35.0% | |
| GAGGGATTATGATAGAGATT+TGG | - | tig0018459:138558-138577 | None:intergenic | 35.0% | |
| !! | CTTGCCTGAGAATAGTTTTA+TGG | - | tig0018459:138665-138684 | None:intergenic | 35.0% |
| TATGACATCAGATTTAGTCC+TGG | - | tig0018459:138731-138750 | None:intergenic | 35.0% | |
| ! | CACGTTTTCTCTTCAAAATG+AGG | + | tig0018459:138903-138922 | Msa1366590:intron | 35.0% |
| ! | TTGACTTTTAGTGTCCAGTA+CGG | + | tig0018459:139160-139179 | Msa1366590:intron | 35.0% |
| !! | ATTTTTCAGCGGGCAAAAAA+AGG | + | tig0018459:139260-139279 | Msa1366590:intron | 35.0% |
| !! | AGAATATTATTTGGTGGTGC+AGG | - | tig0018459:139692-139711 | None:intergenic | 35.0% |
| ! | AACAGCATTTGAAGCATCAT+GGG | - | tig0018459:139746-139765 | None:intergenic | 35.0% |
| ! | AAACAGCATTTGAAGCATCA+TGG | - | tig0018459:139747-139766 | None:intergenic | 35.0% |
| !! | ATGCTGTTTCTTCAATATCC+TGG | + | tig0018459:139758-139777 | Msa1366590:CDS | 35.0% |
| TCTTCAATATCCTGGATTCA+AGG | + | tig0018459:139766-139785 | Msa1366590:CDS | 35.0% | |
| ATTCTAACTTCCTTGAATCC+AGG | - | tig0018459:139779-139798 | None:intergenic | 35.0% | |
| TGGATTCAAGGAAGTTAGAA+TGG | + | tig0018459:139778-139797 | Msa1366590:CDS | 35.0% | |
| !! | TATCAACATAGGGTTTTGTG+GGG | - | tig0018459:139894-139913 | None:intergenic | 35.0% |
| ! | GTTATCAACATAGGGTTTTG+TGG | - | tig0018459:139896-139915 | None:intergenic | 35.0% |
| TCCAACTAATGTTGCAAGAA+AGG | + | tig0018459:139943-139962 | Msa1366590:three_prime_UTR | 35.0% | |
| CTACAATCATACAAGAACCA+AGG | - | tig0018459:140052-140071 | None:intergenic | 35.0% | |
| !! | CATGCATTTTTCTTGTTTGG+GGG | + | tig0018459:140209-140228 | Msa1366590:three_prime_UTR | 35.0% |
| !!! | TAGATGGTCATGTTTTGAGG+GGG | - | tig0018459:135115-135134 | None:intergenic | 40.0% |
| !! | GTAGATGGTCATGTTTTGAG+GGG | - | tig0018459:135116-135135 | None:intergenic | 40.0% |
| GTTGAGGTTGTTGATGTAGA+TGG | - | tig0018459:135131-135150 | None:intergenic | 40.0% | |
| !! | CACGCTGTTTTCAGTCAATT+TGG | + | tig0018459:135270-135289 | Msa1366590:CDS | 40.0% |
| TGAAACATAAGGGTCAAGCT+TGG | + | tig0018459:135325-135344 | Msa1366590:CDS | 40.0% | |
| GAAACATAAGGGTCAAGCTT+GGG | + | tig0018459:135326-135345 | Msa1366590:CDS | 40.0% | |
| ! | TCAAGCTTGGGTGATTTTTG+AGG | + | tig0018459:135338-135357 | Msa1366590:CDS | 40.0% |
| CTTCTGCTTCTAATGCTCTT+AGG | + | tig0018459:135367-135386 | Msa1366590:CDS | 40.0% | |
| AATGCTCTTAGGCAAATGCA+AGG | + | tig0018459:135378-135397 | Msa1366590:CDS | 40.0% | |
| ACCATGGGCTTATCATAGAA+GGG | - | tig0018459:135408-135427 | None:intergenic | 40.0% | |
| TACCATGGGCTTATCATAGA+AGG | - | tig0018459:135409-135428 | None:intergenic | 40.0% | |
| TCTTGTGATGATTGACACTG+TGG | + | tig0018459:135800-135819 | Msa1366590:intron | 40.0% | |
| CCAAACTTTATCCCACTAGA+TGG | - | tig0018459:136069-136088 | None:intergenic | 40.0% | |
| CCATCTAGTGGGATAAAGTT+TGG | + | tig0018459:136066-136085 | Msa1366590:intron | 40.0% | |
| ATTCTGTTCAATGAGGGAAG+GGG | - | tig0018459:136133-136152 | None:intergenic | 40.0% | |
| CTATTCTGTTCAATGAGGGA+AGG | - | tig0018459:136135-136154 | None:intergenic | 40.0% | |
| CTTCCCTCATTGAACAGAAT+AGG | + | tig0018459:136133-136152 | Msa1366590:intron | 40.0% | |
| CTCCCTATTCTGTTCAATGA+GGG | - | tig0018459:136139-136158 | None:intergenic | 40.0% | |
| TCTCCCTATTCTGTTCAATG+AGG | - | tig0018459:136140-136159 | None:intergenic | 40.0% | |
| TAGACATAGTGTAGGACACT+AGG | + | tig0018459:136187-136206 | Msa1366590:intron | 40.0% | |
| TTTATCCCCAAGTGTTCAAG+TGG | + | tig0018459:136257-136276 | Msa1366590:intron | 40.0% | |
| AAACGACCACTTGAACACTT+GGG | - | tig0018459:136266-136285 | None:intergenic | 40.0% | |
| AAAACGACCACTTGAACACT+TGG | - | tig0018459:136267-136286 | None:intergenic | 40.0% | |
| AAGATCAGCCTATGGATCAA+TGG | - | tig0018459:136452-136471 | None:intergenic | 40.0% | |
| ! | TTGATGGATCCTTGACATTG+GGG | - | tig0018459:136804-136823 | None:intergenic | 40.0% |
| ! | CTTGATGGATCCTTGACATT+GGG | - | tig0018459:136805-136824 | None:intergenic | 40.0% |
| ! | ACTTGATGGATCCTTGACAT+TGG | - | tig0018459:136806-136825 | None:intergenic | 40.0% |
| GTTGACTGTGTCTGATGTTT+AGG | + | tig0018459:136896-136915 | Msa1366590:intron | 40.0% | |
| TGACTGTGTCTGATGTTTAG+GGG | + | tig0018459:136898-136917 | Msa1366590:intron | 40.0% | |
| ! | TTAAGGGTATGTTAGGATGG+AGG | + | tig0018459:136940-136959 | Msa1366590:intron | 40.0% |
| ! | TAAGGGTATGTTAGGATGGA+GGG | + | tig0018459:136941-136960 | Msa1366590:intron | 40.0% |
| TATGTTAGGATGGAGGGTTT+AGG | + | tig0018459:136947-136966 | Msa1366590:intron | 40.0% | |
| TGTTAAGGGTCTGTTTAGGA+GGG | - | tig0018459:137128-137147 | None:intergenic | 40.0% | |
| ATGTTAAGGGTCTGTTTAGG+AGG | - | tig0018459:137129-137148 | None:intergenic | 40.0% | |
| !!! | AATTGGGTTTTGGAGGGAAA+GGG | - | tig0018459:137341-137360 | None:intergenic | 40.0% |
| !!! | TTTGGGAATTGGGTTTTGGA+GGG | - | tig0018459:137347-137366 | None:intergenic | 40.0% |
| GTAGGCTATGTTTGGGAATT+GGG | - | tig0018459:137357-137376 | None:intergenic | 40.0% | |
| CAATTCCCAAACATAGCCTA+CGG | + | tig0018459:137356-137375 | Msa1366590:intron | 40.0% | |
| AATTCCCAAACATAGCCTAC+GGG | + | tig0018459:137357-137376 | Msa1366590:intron | 40.0% | |
| AATCTCATGGCCATTCTTAC+GGG | - | tig0018459:137386-137405 | None:intergenic | 40.0% | |
| AGTGAAGGAAGCTAATCTCA+TGG | - | tig0018459:137399-137418 | None:intergenic | 40.0% | |
| CAATCTTGTGGCTATGCTTA+TGG | - | tig0018459:137464-137483 | None:intergenic | 40.0% | |
| !! | CTAGCTTTGTCACAAGTTTG+TGG | + | tig0018459:137772-137791 | Msa1366590:intron | 40.0% |
| ! | GTCTATCTTAATGGATGGTG+TGG | + | tig0018459:137849-137868 | Msa1366590:intron | 40.0% |
| ! | TCTTAATGGATGGTGTGGTA+TGG | + | tig0018459:137854-137873 | Msa1366590:intron | 40.0% |
| !! | AATTGCTTGATTTGTGCCGT+TGG | + | tig0018459:137953-137972 | Msa1366590:intron | 40.0% |
| TTCCCTTAGCTAGCAATCAA+GGG | + | tig0018459:138227-138246 | Msa1366590:intron | 40.0% | |
| GGTGGTGTAATTAAGTGGTT+TGG | - | tig0018459:138260-138279 | None:intergenic | 40.0% | |
| AAGTCCCACATCAAGTAGTA+TGG | - | tig0018459:138290-138309 | None:intergenic | 40.0% | |
| ATACTACTTGATGTGGGACT+TGG | + | tig0018459:138289-138308 | Msa1366590:intron | 40.0% | |
| TACTACTTGATGTGGGACTT+GGG | + | tig0018459:138290-138309 | Msa1366590:intron | 40.0% | |
| TCTATCAAAGGGGAAGAACA+AGG | + | tig0018459:138473-138492 | Msa1366590:intron | 40.0% | |
| ATTGAGTAGTATGGGATGCT+CGG | - | tig0018459:138515-138534 | None:intergenic | 40.0% | |
| CATCCCATACTACTCAATGT+GGG | + | tig0018459:138517-138536 | Msa1366590:intron | 40.0% | |
| ! | TTTTGTCTGTTTGGACCCAT+CGG | + | tig0018459:138608-138627 | Msa1366590:intron | 40.0% |
| CAAACTATTGCACATCCGAT+GGG | - | tig0018459:138626-138645 | None:intergenic | 40.0% | |
| ACAAACTATTGCACATCCGA+TGG | - | tig0018459:138627-138646 | None:intergenic | 40.0% | |
| GATGTCATAGCAAAAGCAGA+CGG | + | tig0018459:138742-138761 | Msa1366590:CDS | 40.0% | |
| GAGCTTAAACTTAACAGTGC+AGG | - | tig0018459:138855-138874 | None:intergenic | 40.0% | |
| TGCCCAATAATGGCAACAAA+AGG | + | tig0018459:138941-138960 | Msa1366590:intron | 40.0% | |
| ! | GGCCTTTTGTTGCCATTATT+GGG | - | tig0018459:138946-138965 | None:intergenic | 40.0% |
| ! | TGGCCTTTTGTTGCCATTAT+TGG | - | tig0018459:138947-138966 | None:intergenic | 40.0% |
| ! | TGTTGTTGGGGGTTTTTGTT+TGG | + | tig0018459:139002-139021 | Msa1366590:intron | 40.0% |
| !! | TTGGGGGTTTTTGTTTGGTT+TGG | + | tig0018459:139007-139026 | Msa1366590:intron | 40.0% |
| !! | TTGTTTGGTTTGGTTGCCAA+AGG | + | tig0018459:139017-139036 | Msa1366590:intron | 40.0% |
| !! | TGTTTGGTTTGGTTGCCAAA+GGG | + | tig0018459:139018-139037 | Msa1366590:intron | 40.0% |
| AGTCTGTTCTTTGCTGATGA+AGG | - | tig0018459:139128-139147 | None:intergenic | 40.0% | |
| TAAAAGAGTTGCATCCGTAC+TGG | - | tig0018459:139177-139196 | None:intergenic | 40.0% | |
| TGCCCGCTGAAAAATGTAAT+TGG | - | tig0018459:139255-139274 | None:intergenic | 40.0% | |
| ! | CAGCTAAATTAGCGTCGTTT+TGG | - | tig0018459:139291-139310 | None:intergenic | 40.0% |
| CAAAACGACGCTAATTTAGC+TGG | + | tig0018459:139289-139308 | Msa1366590:CDS | 40.0% | |
| GTTATCCCAGATACCTTATC+CGG | + | tig0018459:139637-139656 | Msa1366590:intron | 40.0% | |
| TTATCCCAGATACCTTATCC+GGG | + | tig0018459:139638-139657 | Msa1366590:CDS | 40.0% | |
| TATTCCACAAAGGCAATTCC+TGG | - | tig0018459:139815-139834 | None:intergenic | 40.0% | |
| GGAATTGCCTTTGTGGAATA+TGG | + | tig0018459:139815-139834 | Msa1366590:CDS | 40.0% | |
| CTCATCTCCATATTCCACAA+AGG | - | tig0018459:139825-139844 | None:intergenic | 40.0% | |
| GCCTTTCTTGCAACATTAGT+TGG | - | tig0018459:139947-139966 | None:intergenic | 40.0% | |
| ACTAATGTTGCAAGAAAGGC+AGG | + | tig0018459:139947-139966 | Msa1366590:three_prime_UTR | 40.0% | |
| CGAAGATGAAAGAGAGAGTG+AGG | - | tig0018459:135049-135068 | None:intergenic | 45.0% | |
| CCATGGGCTTATCATAGAAG+GGG | - | tig0018459:135407-135426 | None:intergenic | 45.0% | |
| ATCTATAGAGGAGACACGAC+TGG | - | tig0018459:135709-135728 | None:intergenic | 45.0% | |
| TATCAGATCACTAGAGGTGG+AGG | + | tig0018459:135927-135946 | Msa1366590:intron | 45.0% | |
| TTTATCCCACTAGATGGGGT+TGG | - | tig0018459:136063-136082 | None:intergenic | 45.0% | |
| ACTAGAACTGAGTCAGTCCT+TGG | - | tig0018459:136230-136249 | None:intergenic | 45.0% | |
| ! | AAGGACTGACTCAGTTCTAG+TGG | + | tig0018459:136229-136248 | Msa1366590:intron | 45.0% |
| AACGACCACTTGAACACTTG+GGG | - | tig0018459:136265-136284 | None:intergenic | 45.0% | |
| AGCGAAGGAAGCTAATCTCT+TGG | - | tig0018459:136355-136374 | None:intergenic | 45.0% | |
| TGGATCAATGGTCAGTCTCA+TGG | - | tig0018459:136440-136459 | None:intergenic | 45.0% | |
| GAGACTGACCATTGATCCAT+AGG | + | tig0018459:136441-136460 | Msa1366590:intron | 45.0% | |
| GTCATGATATCTCCGTCCAT+CGG | - | tig0018459:136475-136494 | None:intergenic | 45.0% | |
| TGCTCTTGTCTTGTGATGAC+CGG | + | tig0018459:136561-136580 | Msa1366590:intron | 45.0% | |
| TTGAGTGTAGGGGAAGGATT+TGG | - | tig0018459:136657-136676 | None:intergenic | 45.0% | |
| TGTTCATTGAGTGTAGGGGA+AGG | - | tig0018459:136663-136682 | None:intergenic | 45.0% | |
| GTAAAACTGATGCCAAGGAC+TGG | + | tig0018459:136754-136773 | Msa1366590:intron | 45.0% | |
| TTAGGATGGAGGGTTTAGGA+GGG | + | tig0018459:136951-136970 | Msa1366590:intron | 45.0% | |
| !! | CTGTTTAGGAGGGCTTTAGA+GGG | - | tig0018459:137118-137137 | None:intergenic | 45.0% |
| ! | TCTGTTTAGGAGGGCTTTAG+AGG | - | tig0018459:137119-137138 | None:intergenic | 45.0% |
| !!! | GAATTGGGTTTTGGAGGGAA+AGG | - | tig0018459:137342-137361 | None:intergenic | 45.0% |
| !! | GTTTGGGAATTGGGTTTTGG+AGG | - | tig0018459:137348-137367 | None:intergenic | 45.0% |
| CGTAGGCTATGTTTGGGAAT+TGG | - | tig0018459:137358-137377 | None:intergenic | 45.0% | |
| GATACCCGTAGGCTATGTTT+GGG | - | tig0018459:137364-137383 | None:intergenic | 45.0% | |
| TACATAGGCGGATCTTCTCA+TGG | + | tig0018459:137492-137511 | Msa1366590:intron | 45.0% | |
| ! | GTTTTGCAACCCAGAGTTTC+AGG | + | tig0018459:137635-137654 | Msa1366590:intron | 45.0% |
| ! | TTTGAATCACGACTTTGGGG+AGG | - | tig0018459:137676-137695 | None:intergenic | 45.0% |
| CTTGATTGCTAGCTAAGGGA+AGG | - | tig0018459:138228-138247 | None:intergenic | 45.0% | |
| CTTCCCTTAGCTAGCAATCA+AGG | + | tig0018459:138226-138245 | Msa1366590:intron | 45.0% | |
| TCCCTTAGCTAGCAATCAAG+GGG | + | tig0018459:138228-138247 | Msa1366590:intron | 45.0% | |
| TTGTAAAGAGCTACCGACAG+AGG | - | tig0018459:138382-138401 | None:intergenic | 45.0% | |
| TTGGTATCACAACTGGTCGT+CGG | - | tig0018459:138409-138428 | None:intergenic | 45.0% | |
| GCATCCCATACTACTCAATG+TGG | + | tig0018459:138516-138535 | Msa1366590:intron | 45.0% | |
| GGTCCCACATTGAGTAGTAT+GGG | - | tig0018459:138523-138542 | None:intergenic | 45.0% | |
| TGGTCCCACATTGAGTAGTA+TGG | - | tig0018459:138524-138543 | None:intergenic | 45.0% | |
| TGCAGAGAATACAGTATGCC+AGG | + | tig0018459:138710-138729 | Msa1366590:intron | 45.0% | |
| ! | CAGACGGTACTTTTGTTCCT+CGG | + | tig0018459:138758-138777 | Msa1366590:CDS | 45.0% |
| ! | AGACGGTACTTTTGTTCCTC+GGG | + | tig0018459:138759-138778 | Msa1366590:CDS | 45.0% |
| TTCCTCGGGAAAAACGAAAG+AGG | + | tig0018459:138773-138792 | Msa1366590:CDS | 45.0% | |
| TATTGGGCACTCAGTGAGTT+GGG | - | tig0018459:138930-138949 | None:intergenic | 45.0% | |
| TTATTGGGCACTCAGTGAGT+TGG | - | tig0018459:138931-138950 | None:intergenic | 45.0% | |
| ACTCACTGAGTGCCCAATAA+TGG | + | tig0018459:138931-138950 | Msa1366590:intron | 45.0% | |
| ! | TTTGGTTGCCAAAGGGCTTT+TGG | + | tig0018459:139025-139044 | Msa1366590:intron | 45.0% |
| ! | TTGGTTGCCAAAGGGCTTTT+GGG | + | tig0018459:139026-139045 | Msa1366590:intron | 45.0% |
| TTCAGCGGGCAAAAAAAGGA+AGG | + | tig0018459:139264-139283 | Msa1366590:intron | 45.0% | |
| GACGCTAATTTAGCTGGAAC+TGG | + | tig0018459:139295-139314 | Msa1366590:CDS | 45.0% | |
| CACCAGCATAAGCAGGATTT+AGG | - | tig0018459:139321-139340 | None:intergenic | 45.0% | |
| CTAAATCCTGCTTATGCTGG+TGG | + | tig0018459:139319-139338 | Msa1366590:CDS | 45.0% | |
| ACAGCAGAGAAACTTACAGC+CGG | - | tig0018459:139358-139377 | None:intergenic | 45.0% | |
| ! | CATTTGAAGCATCATGGGAG+TGG | - | tig0018459:139741-139760 | None:intergenic | 45.0% |
| AGAATGGTTGAAGCTAAGCC+AGG | + | tig0018459:139794-139813 | Msa1366590:CDS | 45.0% | |
| TAAGCCAGGAATTGCCTTTG+TGG | + | tig0018459:139808-139827 | Msa1366590:CDS | 45.0% | |
| AGATGAGATGCAATCCACAG+TGG | + | tig0018459:139838-139857 | Msa1366590:CDS | 45.0% | |
| !!! | TCTATATTTTTTTTTTTTTA+AGG | + | tig0018459:138827-138846 | Msa1366590:intron | 5.0% |
| AGAGTGAGGTTCTTCACGAC+GGG | - | tig0018459:135035-135054 | None:intergenic | 50.0% | |
| GAGAGTGAGGTTCTTCACGA+CGG | - | tig0018459:135036-135055 | None:intergenic | 50.0% | |
| TTTGAGGGGGTTCGGGATTA+GGG | - | tig0018459:135102-135121 | None:intergenic | 50.0% | |
| !! | TTTTGAGGGGGTTCGGGATT+AGG | - | tig0018459:135103-135122 | None:intergenic | 50.0% |
| !!! | GTCATGTTTTGAGGGGGTTC+GGG | - | tig0018459:135109-135128 | None:intergenic | 50.0% |
| !!! | GGTCATGTTTTGAGGGGGTT+CGG | - | tig0018459:135110-135129 | None:intergenic | 50.0% |
| CCCCTTCTATGATAAGCCCA+TGG | + | tig0018459:135404-135423 | Msa1366590:CDS | 50.0% | |
| !! | ACTAGATGGGGTTGGCTACA+TGG | - | tig0018459:136055-136074 | None:intergenic | 50.0% |
| ATGTAGCCAACCCCATCTAG+TGG | + | tig0018459:136054-136073 | Msa1366590:intron | 50.0% | |
| TGTAGCCAACCCCATCTAGT+GGG | + | tig0018459:136055-136074 | Msa1366590:intron | 50.0% | |
| TGTTCAATGAGGGAAGGGGA+GGG | - | tig0018459:136129-136148 | None:intergenic | 50.0% | |
| TCCATAGGCTGATCTTCCGA+TGG | + | tig0018459:136456-136475 | Msa1366590:intron | 50.0% | |
| TCCATCGGAAGATCAGCCTA+TGG | - | tig0018459:136460-136479 | None:intergenic | 50.0% | |
| TAGGCTGATCTTCCGATGGA+CGG | + | tig0018459:136460-136479 | Msa1366590:intron | 50.0% | |
| GTTAGGATGGAGGGTTTAGG+AGG | + | tig0018459:136950-136969 | Msa1366590:intron | 50.0% | |
| TAGGATGGAGGGTTTAGGAG+GGG | + | tig0018459:136952-136971 | Msa1366590:intron | 50.0% | |
| GGATACCCGTAGGCTATGTT+TGG | - | tig0018459:137365-137384 | None:intergenic | 50.0% | |
| CATTCTTACGGGATACCCGT+AGG | - | tig0018459:137375-137394 | None:intergenic | 50.0% | |
| CTACGGGTATCCCGTAAGAA+TGG | + | tig0018459:137373-137392 | Msa1366590:intron | 50.0% | |
| CCCCCTTGATTGCTAGCTAA+GGG | - | tig0018459:138232-138251 | None:intergenic | 50.0% | |
| CCCTTAGCTAGCAATCAAGG+GGG | + | tig0018459:138229-138248 | Msa1366590:intron | 50.0% | |
| TCCCCCTTGATTGCTAGCTA+AGG | - | tig0018459:138233-138252 | None:intergenic | 50.0% | |
| GAGATTTGGGCATTATGGGG+TGG | - | tig0018459:138544-138563 | None:intergenic | 50.0% | |
| !! | TGCCTCTTTCGTTTTTCCCG+AGG | - | tig0018459:138778-138797 | None:intergenic | 50.0% |
| ! | CGAAAGAGGCACGATGACAA+AGG | + | tig0018459:138787-138806 | Msa1366590:CDS | 50.0% |
| ! | TGGTTGCCAAAGGGCTTTTG+GGG | + | tig0018459:139027-139046 | Msa1366590:intron | 50.0% |
| TCATGACCCCAAAAGCCCTT+TGG | - | tig0018459:139036-139055 | None:intergenic | 50.0% | |
| GGCCTAAATCCTGCTTATGC+TGG | + | tig0018459:139316-139335 | Msa1366590:CDS | 50.0% | |
| CCTGCTTATGCTGGTGGTTA+CGG | + | tig0018459:139325-139344 | Msa1366590:CDS | 50.0% | |
| TGCAAAGTCCTTGCTACCTG+AGG | + | tig0018459:139664-139683 | Msa1366590:CDS | 50.0% | |
| ATCATGGGAGTGGTCTCGTT+GGG | - | tig0018459:139731-139750 | None:intergenic | 50.0% | |
| TACAAGAACCAAGGCTGCTG+CGG | - | tig0018459:140043-140062 | None:intergenic | 50.0% | |
| !! | CGGCAAAGGGTTAGCTTCTC+CGG | + | tig0018459:134985-135004 | Msa1366590:five_prime_UTR | 55.0% |
| !! | AAAGGGTTAGCTTCTCCGGC+TGG | + | tig0018459:134989-135008 | Msa1366590:five_prime_UTR | 55.0% |
| GGTAAACCCTATGAGCCAGC+CGG | - | tig0018459:135007-135026 | None:intergenic | 55.0% | |
| AGTGAGGTTCTTCACGACGG+GGG | - | tig0018459:135033-135052 | None:intergenic | 55.0% | |
| GAGTGAGGTTCTTCACGACG+GGG | - | tig0018459:135034-135053 | None:intergenic | 55.0% | |
| CTGTTCAATGAGGGAAGGGG+AGG | - | tig0018459:136130-136149 | None:intergenic | 55.0% | |
| !!! | GGTTTTGGAGGGAAAGGGAG+GGG | - | tig0018459:137336-137355 | None:intergenic | 55.0% |
| !!! | GGGTTTTGGAGGGAAAGGGA+GGG | - | tig0018459:137337-137356 | None:intergenic | 55.0% |
| !!! | TGGGTTTTGGAGGGAAAGGG+AGG | - | tig0018459:137338-137357 | None:intergenic | 55.0% |
| GGCGGATCTTCTCATGGACA+CGG | + | tig0018459:137498-137517 | Msa1366590:intron | 55.0% | |
| TTTCCGCTCTGCTCCTCTGT+CGG | + | tig0018459:138366-138385 | Msa1366590:intron | 55.0% | |
| GAGTAGTATGGGATGCTCGG+TGG | - | tig0018459:138512-138531 | None:intergenic | 55.0% | |
| CCGTAACCACCAGCATAAGC+AGG | - | tig0018459:139328-139347 | None:intergenic | 55.0% | |
| !! | TGGTGGTTACGGTGCTACTC+CGG | + | tig0018459:139336-139355 | Msa1366590:CDS | 55.0% |
| TCCCAGATACCTTATCCGGG+CGG | + | tig0018459:139641-139660 | Msa1366590:CDS | 55.0% | |
| ! | ACCGCCCGGATAAGGTATCT+GGG | - | tig0018459:139645-139664 | None:intergenic | 55.0% |
| CATCATGGGAGTGGTCTCGT+TGG | - | tig0018459:139732-139751 | None:intergenic | 55.0% | |
| GCAATCCACAGTGGCTATGC+AGG | + | tig0018459:139847-139866 | Msa1366590:CDS | 55.0% | |
| ACAAGAACCAAGGCTGCTGC+GGG | - | tig0018459:140042-140061 | None:intergenic | 55.0% | |
| ! | AGCTTCTCCGGCTGGCTCAT+AGG | + | tig0018459:134997-135016 | Msa1366590:five_prime_UTR | 60.0% |
| ! | GCTTCTCCGGCTGGCTCATA+GGG | + | tig0018459:134998-135017 | Msa1366590:five_prime_UTR | 60.0% |
| GGTTCTTCACGACGGGGGTA+AGG | - | tig0018459:135028-135047 | None:intergenic | 60.0% | |
| AGTCGTACTCGGCCAGTCCT+TGG | - | tig0018459:136769-136788 | None:intergenic | 60.0% | |
| GACAGAGGAGCAGAGCGGAA+AGG | - | tig0018459:138367-138386 | None:intergenic | 60.0% | |
| CTACCGACAGAGGAGCAGAG+CGG | - | tig0018459:138372-138391 | None:intergenic | 60.0% | |
| ! | CACCGCCCGGATAAGGTATC+TGG | - | tig0018459:139646-139665 | None:intergenic | 60.0% |
| GACTTTGCACCGCCCGGATA+AGG | - | tig0018459:139653-139672 | None:intergenic | 60.0% | |
| AGCAAGGACTTTGCACCGCC+CGG | - | tig0018459:139659-139678 | None:intergenic | 60.0% | |
| TGCAGGAGCCTCAGGTAGCA+AGG | - | tig0018459:139675-139694 | None:intergenic | 60.0% | |
| !! | TTTGGTGGTGCAGGAGCCTC+AGG | - | tig0018459:139683-139702 | None:intergenic | 60.0% |
| CTGTTTACCCGCAGCAGCCT+TGG | + | tig0018459:140032-140051 | Msa1366590:three_prime_UTR | 60.0% | |
| CAGCGCCTGCATAGCCACTG+TGG | - | tig0018459:139855-139874 | None:intergenic | 65.0% | |
| ! | GTGGCTATGCAGGCGCTGCA+AGG | + | tig0018459:139857-139876 | Msa1366590:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018459 | gene | 134973 | 140300 | 134973 | ID=Msa1366590;Name=Msa1366590 |
| tig0018459 | mRNA | 134973 | 140300 | 134973 | ID=Msa1366590-mRNA-1;Parent=Msa1366590;Name=Msa1366590-mRNA-1;_AED=0.07;_eAED=0.07;_QI=112|1|1|1|0.75|1|5|369|245 |
| tig0018459 | exon | 134973 | 135169 | 134973 | ID=Msa1366590-mRNA-1:exon:15157;Parent=Msa1366590-mRNA-1 |
| tig0018459 | exon | 135253 | 135425 | 135253 | ID=Msa1366590-mRNA-1:exon:15158;Parent=Msa1366590-mRNA-1 |
| tig0018459 | exon | 138715 | 138808 | 138715 | ID=Msa1366590-mRNA-1:exon:15159;Parent=Msa1366590-mRNA-1 |
| tig0018459 | exon | 139269 | 139360 | 139269 | ID=Msa1366590-mRNA-1:exon:15160;Parent=Msa1366590-mRNA-1 |
| tig0018459 | exon | 139638 | 140300 | 139638 | ID=Msa1366590-mRNA-1:exon:15161;Parent=Msa1366590-mRNA-1 |
| tig0018459 | five_prime_UTR | 134973 | 135084 | 134973 | ID=Msa1366590-mRNA-1:five_prime_utr;Parent=Msa1366590-mRNA-1 |
| tig0018459 | CDS | 135085 | 135169 | 135085 | ID=Msa1366590-mRNA-1:cds;Parent=Msa1366590-mRNA-1 |
| tig0018459 | CDS | 135253 | 135425 | 135253 | ID=Msa1366590-mRNA-1:cds;Parent=Msa1366590-mRNA-1 |
| tig0018459 | CDS | 138715 | 138808 | 138715 | ID=Msa1366590-mRNA-1:cds;Parent=Msa1366590-mRNA-1 |
| tig0018459 | CDS | 139269 | 139360 | 139269 | ID=Msa1366590-mRNA-1:cds;Parent=Msa1366590-mRNA-1 |
| tig0018459 | CDS | 139638 | 139931 | 139638 | ID=Msa1366590-mRNA-1:cds;Parent=Msa1366590-mRNA-1 |
| tig0018459 | three_prime_UTR | 139932 | 140300 | 139932 | ID=Msa1366590-mRNA-1:three_prime_utr;Parent=Msa1366590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
