Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165800 | XP_039684256.1 | 98.776 | 245 | 3 | 0 | 1 | 245 | 1 | 245 | 1.86e-177 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165800 | sp|Q39244|RU1A_ARATH | 73.577 | 246 | 56 | 4 | 2 | 245 | 12 | 250 | 1.33e-123 | 354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165800 | B7FJ52 | 98.367 | 245 | 4 | 0 | 1 | 245 | 1 | 245 | 3.62e-177 | 496 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0114600 | Msa1165800 | 0.806112 | 9.636858e-50 | -8.615850e-47 |
| Msa0433060 | Msa1165800 | 0.806358 | 8.549519e-50 | -8.615850e-47 |
| Msa1165800 | Msa1366590 | 0.805469 | 1.314848e-49 | -8.615850e-47 |
| Msa0524680 | Msa1165800 | 0.804149 | 2.480792e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165800 | MtrunA17_Chr4g0044291 | 97.959 | 245 | 4 | 1 | 1 | 245 | 1 | 244 | 2.02e-178 | 489 |
| Msa1165800 | MtrunA17_Chr7g0269401 | 99.371 | 159 | 1 | 0 | 87 | 245 | 3 | 161 | 2.36e-114 | 324 |
| Msa1165800 | MtrunA17_Chr5g0432171 | 60.338 | 237 | 83 | 4 | 11 | 245 | 7 | 234 | 1.88e-88 | 261 |
| Msa1165800 | MtrunA17_Chr1g0176901 | 58.065 | 186 | 68 | 3 | 61 | 245 | 2 | 178 | 2.02e-61 | 191 |
| Msa1165800 | MtrunA17_Chr7g0269411 | 94.505 | 91 | 5 | 0 | 1 | 91 | 1 | 91 | 3.98e-59 | 182 |
| Msa1165800 | MtrunA17_Chr4g0044321 | 88.298 | 94 | 11 | 0 | 1 | 94 | 1 | 94 | 5.35e-51 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165800 | AT2G47580.1 | 73.577 | 246 | 56 | 4 | 2 | 245 | 12 | 250 | 1.35e-124 | 354 |
| Msa1165800 | AT2G30260.1 | 58.475 | 236 | 87 | 3 | 11 | 245 | 7 | 232 | 4.88e-98 | 286 |
| Msa1165800 | AT1G06960.1 | 57.203 | 236 | 87 | 3 | 11 | 245 | 7 | 229 | 1.16e-89 | 265 |
| Msa1165800 | AT1G06960.3 | 56.522 | 207 | 76 | 3 | 40 | 245 | 7 | 200 | 4.06e-75 | 226 |
| Msa1165800 | AT2G30260.2 | 59.504 | 121 | 49 | 0 | 11 | 131 | 7 | 127 | 2.95e-50 | 162 |
| Msa1165800 | AT1G06960.4 | 53.125 | 160 | 61 | 3 | 87 | 245 | 4 | 150 | 1.63e-47 | 154 |
| Msa1165800 | AT1G06960.2 | 58.120 | 117 | 40 | 1 | 11 | 118 | 7 | 123 | 1.58e-44 | 147 |
| Msa1165800 | AT1G06960.5 | 65.979 | 97 | 33 | 0 | 11 | 107 | 7 | 103 | 7.90e-44 | 145 |
| Msa1165800 | AT1G06960.6 | 57.471 | 87 | 28 | 1 | 40 | 117 | 7 | 93 | 3.26e-30 | 110 |
Find 79 sgRNAs with CRISPR-Local
Find 384 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATAGTTTATCTTCTTAA+TGG | 0.142279 | 7_4:-57790687 | Msa1165800:three_prime_UTR |
| TATCATGGTAAATTACTATT+TGG | 0.200677 | 7_4:-57790563 | Msa1165800:three_prime_UTR |
| GGAATTGCCTTTGTGGAATA+TGG | 0.226538 | 7_4:-57790881 | Msa1165800:CDS |
| CACCGCCCGGATAAGGTATC+TGG | 0.248229 | 7_4:+57791053 | None:intergenic |
| TGAATAAAGAGAATATTATT+TGG | 0.260734 | 7_4:+57790998 | None:intergenic |
| AGCTTCTCCGGCTGGCTCAT+AGG | 0.273692 | 7_4:-57795696 | Msa1165800:five_prime_UTR |
| AGATAAACTATTGCATTAGA+TGG | 0.290629 | 7_4:+57790696 | None:intergenic |
| CTTCTGCTTCTAATGCTCTT+AGG | 0.307963 | 7_4:-57795328 | Msa1165800:CDS |
| GCCTTTCTTGCAACATTAGT+TGG | 0.336989 | 7_4:+57790752 | None:intergenic |
| TACCATGGGCTTATCATAGA+AGG | 0.348156 | 7_4:+57795289 | None:intergenic |
| CAGCTAAATTAGCGTCGTTT+TGG | 0.367566 | 7_4:+57791408 | None:intergenic |
| TCCAACTAATGTTGCAAGAA+AGG | 0.373108 | 7_4:-57790753 | Msa1165800:three_prime_UTR |
| CCTGCTTATGCTGGTGGTTA+CGG | 0.390910 | 7_4:-57791371 | Msa1165800:CDS |
| CACCAGCATAAGCAGGATTT+AGG | 0.401811 | 7_4:+57791378 | None:intergenic |
| TATTCCACAAAGGCAATTCC+TGG | 0.402314 | 7_4:+57790884 | None:intergenic |
| GTTATCCCAGATACCTTATC+CGG | 0.404748 | 7_4:-57791059 | Msa1165800:CDS |
| ATGCTGTTTCTTCAATATCC+TGG | 0.406930 | 7_4:-57790938 | Msa1165800:CDS |
| TTTCAAGACTCTGAAACATA+AGG | 0.428186 | 7_4:-57795381 | Msa1165800:CDS |
| GACTTTGCACCGCCCGGATA+AGG | 0.431492 | 7_4:+57791046 | None:intergenic |
| CTGTTTACCCGCAGCAGCCT+TGG | 0.433204 | 7_4:-57790664 | Msa1165800:three_prime_UTR |
| TTTGCATAAGTTATCAACAT+AGG | 0.436644 | 7_4:+57790794 | None:intergenic |
| TTTGGTGGTGCAGGAGCCTC+AGG | 0.448624 | 7_4:+57791016 | None:intergenic |
| GACGCTAATTTAGCTGGAAC+TGG | 0.449548 | 7_4:-57791401 | Msa1165800:CDS |
| CGGCAAAGGGTTAGCTTCTC+CGG | 0.456908 | 7_4:-57795708 | Msa1165800:five_prime_UTR |
| GCAATCCACAGTGGCTATGC+AGG | 0.457768 | 7_4:-57790849 | Msa1165800:CDS |
| AGAATATTATTTGGTGGTGC+AGG | 0.462021 | 7_4:+57791007 | None:intergenic |
| GCTTCTCCGGCTGGCTCATA+GGG | 0.470630 | 7_4:-57795695 | Msa1165800:five_prime_UTR |
| TCTTCAATATCCTGGATTCA+AGG | 0.474103 | 7_4:-57790930 | Msa1165800:CDS |
| GTTGAGGTTGTTGATGTAGA+TGG | 0.478062 | 7_4:+57795565 | None:intergenic |
| TTGCATAAGTTATCAACATA+GGG | 0.478071 | 7_4:+57790795 | None:intergenic |
| ATCATGGGAGTGGTCTCGTT+GGG | 0.478382 | 7_4:+57790968 | None:intergenic |
| CAAAACGACGCTAATTTAGC+TGG | 0.481431 | 7_4:-57791407 | Msa1165800:CDS |
| TAAGCCAGGAATTGCCTTTG+TGG | 0.487844 | 7_4:-57790888 | Msa1165800:CDS |
| TGGATTCAAGGAAGTTAGAA+TGG | 0.488429 | 7_4:-57790918 | Msa1165800:CDS |
| GAAACATAAGGGTCAAGCTT+GGG | 0.490093 | 7_4:-57795369 | Msa1165800:CDS |
| AAAGGGTTAGCTTCTCCGGC+TGG | 0.494890 | 7_4:-57795704 | Msa1165800:five_prime_UTR |
| TTCAAGACTCTGAAACATAA+GGG | 0.501324 | 7_4:-57795380 | Msa1165800:CDS |
| ATTCTAACTTCCTTGAATCC+AGG | 0.502372 | 7_4:+57790920 | None:intergenic |
| GGCCTAAATCCTGCTTATGC+TGG | 0.504297 | 7_4:-57791380 | Msa1165800:CDS |
| AGAGTGAGGTTCTTCACGAC+GGG | 0.507364 | 7_4:+57795661 | None:intergenic |
| TGCAGAGAATACAGTATGCC+AGG | 0.509126 | 7_4:-57791983 | Msa1165800:intron |
| AGAATGGTTGAAGCTAAGCC+AGG | 0.509824 | 7_4:-57790902 | Msa1165800:CDS |
| AGCAAGGACTTTGCACCGCC+CGG | 0.516963 | 7_4:+57791040 | None:intergenic |
| ACCATGGGCTTATCATAGAA+GGG | 0.521161 | 7_4:+57795290 | None:intergenic |
| ACTAATGTTGCAAGAAAGGC+AGG | 0.522718 | 7_4:-57790749 | Msa1165800:three_prime_UTR |
| AAACAGCATTTGAAGCATCA+TGG | 0.523248 | 7_4:+57790952 | None:intergenic |
| AACAGCATTTGAAGCATCAT+GGG | 0.537484 | 7_4:+57790953 | None:intergenic |
| TGAAACATAAGGGTCAAGCT+TGG | 0.538887 | 7_4:-57795370 | Msa1165800:CDS |
| CATCATGGGAGTGGTCTCGT+TGG | 0.539108 | 7_4:+57790967 | None:intergenic |
| ACAAGAACCAAGGCTGCTGC+GGG | 0.544665 | 7_4:+57790657 | None:intergenic |
| GTGGCTATGCAGGCGCTGCA+AGG | 0.546739 | 7_4:-57790839 | Msa1165800:CDS |
| CGAAGATGAAAGAGAGAGTG+AGG | 0.551277 | 7_4:+57795647 | None:intergenic |
| TACAAGAACCAAGGCTGCTG+CGG | 0.558036 | 7_4:+57790656 | None:intergenic |
| ATAAAGAGAATATTATTTGG+TGG | 0.560203 | 7_4:+57791001 | None:intergenic |
| CTAAATCCTGCTTATGCTGG+TGG | 0.563875 | 7_4:-57791377 | Msa1165800:CDS |
| CCGTAACCACCAGCATAAGC+AGG | 0.564623 | 7_4:+57791371 | None:intergenic |
| TGCAGGAGCCTCAGGTAGCA+AGG | 0.570195 | 7_4:+57791024 | None:intergenic |
| CATTTGAAGCATCATGGGAG+TGG | 0.573182 | 7_4:+57790958 | None:intergenic |
| TATGACATCAGATTTAGTCC+TGG | 0.590587 | 7_4:+57791965 | None:intergenic |
| CCCCTTCTATGATAAGCCCA+TGG | 0.593341 | 7_4:-57795291 | Msa1165800:intron |
| TCGAAATCTCAACACAAACA+TGG | 0.593765 | 7_4:-57795627 | Msa1165800:exon |
| TCAATTTGGGAAGATACTTG+AGG | 0.598924 | 7_4:-57795411 | Msa1165800:CDS |
| CGAAAGAGGCACGATGACAA+AGG | 0.607215 | 7_4:-57791906 | Msa1165800:intron |
| ACCGCCCGGATAAGGTATCT+GGG | 0.612135 | 7_4:+57791054 | None:intergenic |
| TGCAAAGTCCTTGCTACCTG+AGG | 0.615525 | 7_4:-57791032 | Msa1165800:CDS |
| AATGCTCTTAGGCAAATGCA+AGG | 0.618597 | 7_4:-57795317 | Msa1165800:CDS |
| GGTAAACCCTATGAGCCAGC+CGG | 0.619652 | 7_4:+57795689 | None:intergenic |
| TGGTGGTTACGGTGCTACTC+CGG | 0.627577 | 7_4:-57791360 | Msa1165800:CDS |
| GAGAGTGAGGTTCTTCACGA+CGG | 0.628296 | 7_4:+57795660 | None:intergenic |
| CAGCGCCTGCATAGCCACTG+TGG | 0.631864 | 7_4:+57790844 | None:intergenic |
| CCATGGGCTTATCATAGAAG+GGG | 0.644197 | 7_4:+57795291 | None:intergenic |
| TTATCCCAGATACCTTATCC+GGG | 0.647182 | 7_4:-57791058 | Msa1165800:CDS |
| CTCATCTCCATATTCCACAA+AGG | 0.648390 | 7_4:+57790874 | None:intergenic |
| CTACAATCATACAAGAACCA+AGG | 0.654648 | 7_4:+57790647 | None:intergenic |
| GATGTCATAGCAAAAGCAGA+CGG | 0.699134 | 7_4:-57791951 | Msa1165800:CDS |
| GAGTGAGGTTCTTCACGACG+GGG | 0.717694 | 7_4:+57795662 | None:intergenic |
| AGTGAGGTTCTTCACGACGG+GGG | 0.717916 | 7_4:+57795663 | None:intergenic |
| TCCCAGATACCTTATCCGGG+CGG | 0.741643 | 7_4:-57791055 | Msa1165800:CDS |
| AGATGAGATGCAATCCACAG+TGG | 0.772288 | 7_4:-57790858 | Msa1165800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAATAAATAAATTA+CGG | - | chr7_4:57792432-57792451 | Msa1165800:intron | 0.0% |
| !!! | TTATATCATAAAACATATTT+TGG | + | chr7_4:57791456-57791475 | None:intergenic | 10.0% |
| !!! | TCTCTATTTTTTTTTTTTTA+AGG | - | chr7_4:57794272-57794291 | Msa1165800:intron | 10.0% |
| !! | CTAATGAAAAATTGATATTA+TGG | + | chr7_4:57790632-57790651 | None:intergenic | 15.0% |
| !!! | TTTTTTCAGTTAGAATTTTT+TGG | - | chr7_4:57790933-57790952 | Msa1165800:CDS | 15.0% |
| !!! | TTTTTCAGTTAGAATTTTTT+GGG | - | chr7_4:57790934-57790953 | Msa1165800:CDS | 15.0% |
| !! | ATTAAGTTACATAAATTTCA+AGG | + | chr7_4:57791768-57791787 | None:intergenic | 15.0% |
| !! | TTAAATTACATTTATAGTGA+AGG | + | chr7_4:57792369-57792388 | None:intergenic | 15.0% |
| !! | TTCACTATAAATGTAATTTA+AGG | - | chr7_4:57792368-57792387 | Msa1165800:intron | 15.0% |
| !! | TCACTATAAATGTAATTTAA+GGG | - | chr7_4:57792369-57792388 | Msa1165800:intron | 15.0% |
| !!! | TGATTTAACAAAACATTTTA+TGG | + | chr7_4:57792461-57792480 | None:intergenic | 15.0% |
| !! | TACTAAAAAAGGAATATATT+GGG | + | chr7_4:57792984-57793003 | None:intergenic | 15.0% |
| !! | ATATGTATATCTACTAAAAA+AGG | + | chr7_4:57792995-57793014 | None:intergenic | 15.0% |
| !! | AAATAAAATTATGTGATGTA+TGG | - | chr7_4:57793272-57793291 | Msa1165800:intron | 15.0% |
| !! | AAAAAACCTAAGAAATATAT+TGG | + | chr7_4:57794412-57794431 | None:intergenic | 15.0% |
| !! | GCATAAAAAATATCATTTAT+TGG | + | chr7_4:57794544-57794563 | None:intergenic | 15.0% |
| !! | TGAATAAAGAGAATATTATT+TGG | + | chr7_4:57795143-57795162 | None:intergenic | 15.0% |
| !! | TTCTTATAAAAATCTGTATT+TGG | - | chr7_4:57795534-57795553 | Msa1165800:intron | 15.0% |
| !!! | ATTGTTATCTTTTTTTATCA+TGG | - | chr7_4:57795560-57795579 | Msa1165800:CDS | 15.0% |
| !! | AACGAAAAAATAAAAATCGA+CGG | - | chr7_4:57790593-57790612 | Msa1165800:three_prime_UTR | 20.0% |
| !!! | GTTTCTCTTATAATTTTTCT+AGG | + | chr7_4:57791400-57791419 | None:intergenic | 20.0% |
| !! | GTAAGAAGAAGAATATATTT+AGG | + | chr7_4:57791945-57791964 | None:intergenic | 20.0% |
| !!! | AAATAGGAAGATATTTTTCT+TGG | - | chr7_4:57792128-57792147 | Msa1165800:intron | 20.0% |
| !!! | TATTTTTCTTGGAATGATAA+TGG | - | chr7_4:57792139-57792158 | Msa1165800:intron | 20.0% |
| !! | AGAAAAAAAGTCATGATAAA+TGG | + | chr7_4:57792511-57792530 | None:intergenic | 20.0% |
| !!! | ATACTCTTATTTGATGTTAA+GGG | + | chr7_4:57792587-57792606 | None:intergenic | 20.0% |
| !! | AATATATCTTGATGTACATT+TGG | - | chr7_4:57792628-57792647 | Msa1165800:intron | 20.0% |
| !! | ATATATCTTGATGTACATTT+GGG | - | chr7_4:57792629-57792648 | Msa1165800:intron | 20.0% |
| !! | ATTCAACAAAATTATAGTGA+AGG | + | chr7_4:57792859-57792878 | None:intergenic | 20.0% |
| !! | ACTAAAAAAGGAATATATTG+GGG | + | chr7_4:57792983-57793002 | None:intergenic | 20.0% |
| !! | CTACTAAAAAAGGAATATAT+TGG | + | chr7_4:57792985-57793004 | None:intergenic | 20.0% |
| !! | ACAAATCAAGCAATTATTAT+CGG | + | chr7_4:57793393-57793412 | None:intergenic | 20.0% |
| !! | AGATTTGAAAAATATCAAAC+AGG | + | chr7_4:57793499-57793518 | None:intergenic | 20.0% |
| !!! | AAACAAATCTATTTTAGCAT+GGG | + | chr7_4:57793563-57793582 | None:intergenic | 20.0% |
| !!! | ATAGATTAGAGATTTGTTAT+GGG | + | chr7_4:57793764-57793783 | None:intergenic | 20.0% |
| !!! | AATAGATTAGAGATTTGTTA+TGG | + | chr7_4:57793765-57793784 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGTTGATGTTGT+CGG | - | chr7_4:57794430-57794449 | Msa1165800:intron | 20.0% |
| !! | TAATACATTAACAATGAAGA+AGG | - | chr7_4:57794511-57794530 | Msa1165800:intron | 20.0% |
| !!! | TTGTAGTTTATTTTAGACAA+TGG | - | chr7_4:57794819-57794838 | Msa1165800:intron | 20.0% |
| !!! | TCATAATTTTAACCGTTTTA+TGG | - | chr7_4:57794897-57794916 | Msa1165800:intron | 20.0% |
| !! | ATAAAGAGAATATTATTTGG+TGG | + | chr7_4:57795140-57795159 | None:intergenic | 20.0% |
| !! | TATCATGGTAAATTACTATT+TGG | - | chr7_4:57795575-57795594 | Msa1165800:CDS | 20.0% |
| !!! | CAGATTTATTTTACATTTTC+TGG | - | chr7_4:57795615-57795634 | Msa1165800:exon | 20.0% |
| !!! | CGATTTTTATTTTTTCGTTG+AGG | + | chr7_4:57790592-57790611 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTCTCAAATCCAA+TGG | + | chr7_4:57791089-57791108 | None:intergenic | 25.0% |
| ! | TTGGATTTGAGAAAACAAAA+AGG | - | chr7_4:57791089-57791108 | Msa1165800:intron | 25.0% |
| ! | GAAAACAAAAAGGAATGTTT+CGG | - | chr7_4:57791099-57791118 | Msa1165800:intron | 25.0% |
| !! | ATTGTGTTCTATGCTATTTA+TGG | - | chr7_4:57791277-57791296 | Msa1165800:intron | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | - | chr7_4:57791429-57791448 | Msa1165800:CDS | 25.0% |
| !!! | AACTAAGTGTTTTGTTTTTG+AGG | - | chr7_4:57791742-57791761 | Msa1165800:intron | 25.0% |
| ! | ATTCAACAAAATTATAGCGA+AGG | + | chr7_4:57791816-57791835 | None:intergenic | 25.0% |
| ! | AGAAGAAGAATATATTTAGG+TGG | + | chr7_4:57791942-57791961 | None:intergenic | 25.0% |
| ! | AACAAAGAGAATTTATTCCA+CGG | + | chr7_4:57792070-57792089 | None:intergenic | 25.0% |
| !! | TATTTTGTTCATTGAGTGTA+GGG | + | chr7_4:57792113-57792132 | None:intergenic | 25.0% |
| ! | TTGATCAAAATTGAACTTGA+TGG | + | chr7_4:57792265-57792284 | None:intergenic | 25.0% |
| !! | ATGTAATTTAAGGGTATGTT+AGG | - | chr7_4:57792378-57792397 | Msa1165800:intron | 25.0% |
| !! | CATACTCTTATTTGATGTTA+AGG | + | chr7_4:57792588-57792607 | None:intergenic | 25.0% |
| ! | CTTAACATCAAATAAGAGTA+TGG | - | chr7_4:57792586-57792605 | Msa1165800:intron | 25.0% |
| !! | AAATAAGAGTATGGTTTAGA+GGG | - | chr7_4:57792595-57792614 | Msa1165800:intron | 25.0% |
| ! | AAGATTGACCATTAATACAT+AGG | - | chr7_4:57792922-57792941 | Msa1165800:intron | 25.0% |
| !! | AAAAAATTGTTGTGTTGTTG+TGG | - | chr7_4:57793048-57793067 | Msa1165800:intron | 25.0% |
| ! | CAATTAAAATAAAGCTCCAA+CGG | + | chr7_4:57793417-57793436 | None:intergenic | 25.0% |
| !!! | ATTTTAATTGGTCATATGCA+TGG | - | chr7_4:57793427-57793446 | Msa1165800:intron | 25.0% |
| ! | ACGAAAAATAACACATATCA+CGG | + | chr7_4:57793466-57793485 | None:intergenic | 25.0% |
| !!! | AACAAATCTATTTTAGCATG+GGG | + | chr7_4:57793562-57793581 | None:intergenic | 25.0% |
| !!! | CAAACAAATCTATTTTAGCA+TGG | + | chr7_4:57793564-57793583 | None:intergenic | 25.0% |
| !! | CATGCTAAAATAGATTTGTT+TGG | - | chr7_4:57793562-57793581 | Msa1165800:intron | 25.0% |
| !!! | TAGATTAGAGATTTGTTATG+GGG | + | chr7_4:57793763-57793782 | None:intergenic | 25.0% |
| ! | TTATTAATTGGTATCACAAC+TGG | + | chr7_4:57793861-57793880 | None:intergenic | 25.0% |
| ! | GTGCTTAGATACTTATTAAT+TGG | + | chr7_4:57793873-57793892 | None:intergenic | 25.0% |
| ! | TTGTCTATATCACAATATGA+GGG | + | chr7_4:57794021-57794040 | None:intergenic | 25.0% |
| !!! | AACTTTTTGTTTTGTCTGTT+TGG | - | chr7_4:57794044-57794063 | Msa1165800:intron | 25.0% |
| ! | ATTTCCATAAAACTATTCTC+AGG | - | chr7_4:57794103-57794122 | Msa1165800:intron | 25.0% |
| ! | TGTTAAGTTTAAGCTCATAT+TGG | - | chr7_4:57794304-57794323 | Msa1165800:intron | 25.0% |
| ! | AAAAGGCCAATATATTTCTT+AGG | - | chr7_4:57794403-57794422 | Msa1165800:intron | 25.0% |
| !!! | TTTTTTTTGTTGATGTTGTC+GGG | - | chr7_4:57794431-57794450 | Msa1165800:intron | 25.0% |
| !! | GCAACTCTTTTAATGAATAT+CGG | - | chr7_4:57794627-57794646 | Msa1165800:intron | 25.0% |
| !!! | TATCCAATTACATTTTTCAG+CGG | - | chr7_4:57794691-57794710 | Msa1165800:intron | 25.0% |
| ! | TTAGACAATGGTCATATTAT+AGG | - | chr7_4:57794831-57794850 | Msa1165800:intron | 25.0% |
| ! | CGAGAAAAAATACCATAAAA+CGG | + | chr7_4:57794912-57794931 | None:intergenic | 25.0% |
| ! | TTGCATAAGTTATCAACATA+GGG | + | chr7_4:57795346-57795365 | None:intergenic | 25.0% |
| ! | TTTGCATAAGTTATCAACAT+AGG | + | chr7_4:57795347-57795366 | None:intergenic | 25.0% |
| ! | AGATAAACTATTGCATTAGA+TGG | + | chr7_4:57795445-57795464 | None:intergenic | 25.0% |
| ! | GCAATAGTTTATCTTCTTAA+TGG | - | chr7_4:57795451-57795470 | Msa1165800:intron | 25.0% |
| ! | AAAAAAGAGATCATGTATCT+GGG | + | chr7_4:57795684-57795703 | None:intergenic | 25.0% |
| !! | TTTCAAGACTCTGAAACATA+AGG | - | chr7_4:57790757-57790776 | Msa1165800:three_prime_UTR | 30.0% |
| !! | TTCAAGACTCTGAAACATAA+GGG | - | chr7_4:57790758-57790777 | Msa1165800:three_prime_UTR | 30.0% |
| AACAATCTTCAACATGACAT+AGG | - | chr7_4:57791018-57791037 | Msa1165800:CDS | 30.0% | |
| ! | TTCTCTAGCTGAATTTTGTT+TGG | - | chr7_4:57791042-57791061 | Msa1165800:CDS | 30.0% |
| TAGAATAGTTAACATGCCAT+TGG | - | chr7_4:57791070-57791089 | Msa1165800:intron | 30.0% | |
| CTCCTCTATAGATATTATGT+TGG | - | chr7_4:57791159-57791178 | Msa1165800:intron | 30.0% | |
| GACCAACATAATATCTATAG+AGG | + | chr7_4:57791164-57791183 | None:intergenic | 30.0% | |
| TTGCTAAATGAAAATGCAGA+AGG | - | chr7_4:57791184-57791203 | Msa1165800:intron | 30.0% | |
| ! | GAATAGGGAGATATTTTTCT+TGG | - | chr7_4:57791595-57791614 | Msa1165800:intron | 30.0% |
| ! | TATTTTTCTTGGAAGGATAG+TGG | - | chr7_4:57791606-57791625 | Msa1165800:intron | 30.0% |
| TATTCTTCTTCTTACTGTGA+AGG | - | chr7_4:57791950-57791969 | Msa1165800:CDS | 30.0% | |
| ! | ATTTTGTTCATTGAGTGTAG+GGG | + | chr7_4:57792112-57792131 | None:intergenic | 30.0% |
| ! | CTATTTTGTTCATTGAGTGT+AGG | + | chr7_4:57792114-57792133 | None:intergenic | 30.0% |
| CTACACTCAATGAACAAAAT+AGG | - | chr7_4:57792112-57792131 | Msa1165800:intron | 30.0% | |
| AAATAGTAAAACTGATGCCA+AGG | - | chr7_4:57792194-57792213 | Msa1165800:intron | 30.0% | |
| TAAATATGACAAGTCGTACT+CGG | + | chr7_4:57792225-57792244 | None:intergenic | 30.0% | |
| ! | AATTTAAGGGTATGTTAGGA+TGG | - | chr7_4:57792382-57792401 | Msa1165800:intron | 30.0% |
| ! | CAAATAAGAGTATGGTTTAG+AGG | - | chr7_4:57792594-57792613 | Msa1165800:intron | 30.0% |
| !! | TTAGCCTTTTTGTCTTTGAT+TGG | - | chr7_4:57792878-57792897 | Msa1165800:intron | 30.0% |
| ! | TAGCCTTTTTGTCTTTGATT+GGG | - | chr7_4:57792879-57792898 | Msa1165800:intron | 30.0% |
| TTACCCAATCAAAGACAAAA+AGG | + | chr7_4:57792885-57792904 | None:intergenic | 30.0% | |
| TGTATTAATGGTCAATCTTG+TGG | + | chr7_4:57792921-57792940 | None:intergenic | 30.0% | |
| ATTGACCATTAATACATAGG+CGG | - | chr7_4:57792925-57792944 | Msa1165800:intron | 30.0% | |
| AATCTTTGAATCACGACTTT+GGG | + | chr7_4:57793125-57793144 | None:intergenic | 30.0% | |
| AAATCTTTGAATCACGACTT+TGG | + | chr7_4:57793126-57793145 | None:intergenic | 30.0% | |
| TGTTGTGAACAACTACTAAT+AGG | - | chr7_4:57793184-57793203 | Msa1165800:intron | 30.0% | |
| TGATGTATGGTCTATCTTAA+TGG | - | chr7_4:57793285-57793304 | Msa1165800:intron | 30.0% | |
| !!! | CGTTGGAGCTTTATTTTAAT+TGG | - | chr7_4:57793415-57793434 | Msa1165800:intron | 30.0% |
| CGAAAAATAACACATATCAC+GGG | + | chr7_4:57793465-57793484 | None:intergenic | 30.0% | |
| !!! | ATATGTGTTATTTTTCGTGC+TGG | - | chr7_4:57793468-57793487 | Msa1165800:intron | 30.0% |
| AGAGAAAAAATTCATGTTGC+TGG | + | chr7_4:57793522-57793541 | None:intergenic | 30.0% | |
| !!! | ACAAATCTATTTTAGCATGG+GGG | + | chr7_4:57793561-57793580 | None:intergenic | 30.0% |
| AGACAAGTATCTAAGTACTT+AGG | - | chr7_4:57793644-57793663 | Msa1165800:intron | 30.0% | |
| GACAAGTATCTAAGTACTTA+GGG | - | chr7_4:57793645-57793664 | Msa1165800:intron | 30.0% | |
| ATCAAGTAGTATGGAATGTT+TGG | + | chr7_4:57793726-57793745 | None:intergenic | 30.0% | |
| AGGGATTATGATAGAGATTT+GGG | + | chr7_4:57794002-57794021 | None:intergenic | 30.0% | |
| GTTGTCTATATCACAATATG+AGG | + | chr7_4:57794022-57794041 | None:intergenic | 30.0% | |
| ! | ACGTTTTCTCTTCAAAATGA+GGG | - | chr7_4:57794349-57794368 | Msa1165800:intron | 30.0% |
| !!! | TTTTTTTGTTGATGTTGTCG+GGG | - | chr7_4:57794432-57794451 | Msa1165800:intron | 30.0% |
| !! | ATCCAATTACATTTTTCAGC+GGG | - | chr7_4:57794692-57794711 | Msa1165800:intron | 30.0% |
| !!! | TATGGTATTTTTTCTCGAAC+TGG | - | chr7_4:57794915-57794934 | Msa1165800:intron | 30.0% |
| ! | GTATGTTTTCTGATAAAAGC+TGG | - | chr7_4:57794937-57794956 | Msa1165800:intron | 30.0% |
| TTCTATAATACACAGAAGCA+CGG | - | chr7_4:57795011-57795030 | Msa1165800:intron | 30.0% | |
| !! | TTATCAACATAGGGTTTTGT+GGG | + | chr7_4:57795337-57795356 | None:intergenic | 30.0% |
| ! | TGTCATGCATTTTTCTTGTT+TGG | - | chr7_4:57795648-57795667 | Msa1165800:five_prime_UTR | 30.0% |
| !! | GTCATGCATTTTTCTTGTTT+GGG | - | chr7_4:57795649-57795668 | Msa1165800:five_prime_UTR | 30.0% |
| !! | TCATGCATTTTTCTTGTTTG+GGG | - | chr7_4:57795650-57795669 | Msa1165800:five_prime_UTR | 30.0% |
| AAAAAGAGATCATGTATCTG+GGG | + | chr7_4:57795683-57795702 | None:intergenic | 30.0% | |
| CAAAAAAGAGATCATGTATC+TGG | + | chr7_4:57795685-57795704 | None:intergenic | 30.0% | |
| TCGAAATCTCAACACAAACA+TGG | - | chr7_4:57790511-57790530 | Msa1165800:three_prime_UTR | 35.0% | |
| !! | TGTAGATGGTCATGTTTTGA+GGG | + | chr7_4:57790562-57790581 | None:intergenic | 35.0% |
| ! | ATGTAGATGGTCATGTTTTG+AGG | + | chr7_4:57790563-57790582 | None:intergenic | 35.0% |
| !! | ACGCTGTTTTCAGTCAATTT+GGG | - | chr7_4:57790714-57790733 | Msa1165800:three_prime_UTR | 35.0% |
| TCAATTTGGGAAGATACTTG+AGG | - | chr7_4:57790727-57790746 | Msa1165800:three_prime_UTR | 35.0% | |
| AGAGCATATGATAGTACCAT+GGG | + | chr7_4:57790866-57790885 | None:intergenic | 35.0% | |
| ! | AAGAGCATATGATAGTACCA+TGG | + | chr7_4:57790867-57790886 | None:intergenic | 35.0% |
| GCTATTTATCAGATCACTAG+AGG | - | chr7_4:57791364-57791383 | Msa1165800:CDS | 35.0% | |
| ATTTATCAGATCACTAGAGG+TGG | - | chr7_4:57791367-57791386 | Msa1165800:CDS | 35.0% | |
| AAACTTTATCCCACTAGATG+GGG | + | chr7_4:57791510-57791529 | None:intergenic | 35.0% | |
| CAAACTTTATCCCACTAGAT+GGG | + | chr7_4:57791511-57791530 | None:intergenic | 35.0% | |
| TATTCTGTTCAATGAGGGAA+GGG | + | chr7_4:57791580-57791599 | None:intergenic | 35.0% | |
| TTCCCTCATTGAACAGAATA+GGG | - | chr7_4:57791580-57791599 | Msa1165800:intron | 35.0% | |
| ! | AGGGAGATATTTTTCTTGGA+AGG | - | chr7_4:57791599-57791618 | Msa1165800:intron | 35.0% |
| ! | GTGGATTTTAGACATAGTGT+AGG | - | chr7_4:57791625-57791644 | Msa1165800:intron | 35.0% |
| AAATAGCAAAACTGATGCCA+AGG | - | chr7_4:57791656-57791675 | Msa1165800:intron | 35.0% | |
| AGCTAAGTTAACTATATCCG+TGG | - | chr7_4:57792050-57792069 | Msa1165800:intron | 35.0% | |
| CATATTTATCCCCAATGTCA+AGG | - | chr7_4:57792237-57792256 | Msa1165800:intron | 35.0% | |
| ACTAAATACAGACTTGTACG+TGG | - | chr7_4:57792299-57792318 | Msa1165800:intron | 35.0% | |
| TTGACTGTGTCTGATGTTTA+GGG | - | chr7_4:57792342-57792361 | Msa1165800:intron | 35.0% | |
| TTGATGTTAAGGGTCTGTTT+AGG | + | chr7_4:57792577-57792596 | None:intergenic | 35.0% | |
| ! | TATGTTTGGGAATTGGGTTT+TGG | + | chr7_4:57792796-57792815 | None:intergenic | 35.0% |
| TAATCTCATGGCCATTCTTA+CGG | + | chr7_4:57792832-57792851 | None:intergenic | 35.0% | |
| AAGATCCGCCTATGTATTAA+TGG | + | chr7_4:57792933-57792952 | None:intergenic | 35.0% | |
| GAATCAATTCCTGAAACTCT+GGG | + | chr7_4:57793092-57793111 | None:intergenic | 35.0% | |
| AGAATCAATTCCTGAAACTC+TGG | + | chr7_4:57793093-57793112 | None:intergenic | 35.0% | |
| ATCTTTGAATCACGACTTTG+GGG | + | chr7_4:57793124-57793143 | None:intergenic | 35.0% | |
| GTATGGTCTATCTTAATGGA+TGG | - | chr7_4:57793289-57793308 | Msa1165800:intron | 35.0% | |
| !!! | TATTTTAGCATGGGGGAAAA+TGG | + | chr7_4:57793554-57793573 | None:intergenic | 35.0% |
| !! | TGTTTGGTGGTGTAATTAAG+TGG | + | chr7_4:57793710-57793729 | None:intergenic | 35.0% |
| AAGTAGTATGGAATGTTTGG+TGG | + | chr7_4:57793723-57793742 | None:intergenic | 35.0% | |
| ACATTCCATACTACTTGATG+TGG | - | chr7_4:57793727-57793746 | Msa1165800:intron | 35.0% | |
| CATTCCATACTACTTGATGT+GGG | - | chr7_4:57793728-57793747 | Msa1165800:intron | 35.0% | |
| ATAGAGATTTGGGCATTATG+GGG | + | chr7_4:57793992-57794011 | None:intergenic | 35.0% | |
| GATAGAGATTTGGGCATTAT+GGG | + | chr7_4:57793993-57794012 | None:intergenic | 35.0% | |
| TGATAGAGATTTGGGCATTA+TGG | + | chr7_4:57793994-57794013 | None:intergenic | 35.0% | |
| GAGGGATTATGATAGAGATT+TGG | + | chr7_4:57794003-57794022 | None:intergenic | 35.0% | |
| !! | CTTGCCTGAGAATAGTTTTA+TGG | + | chr7_4:57794110-57794129 | None:intergenic | 35.0% |
| TATGACATCAGATTTAGTCC+TGG | + | chr7_4:57794176-57794195 | None:intergenic | 35.0% | |
| ! | CACGTTTTCTCTTCAAAATG+AGG | - | chr7_4:57794348-57794367 | Msa1165800:intron | 35.0% |
| !!! | TTTTTTGTTGATGTTGTCGG+GGG | - | chr7_4:57794433-57794452 | Msa1165800:intron | 35.0% |
| ! | TTGACTTTTAGTGTCCAGTA+CGG | - | chr7_4:57794602-57794621 | Msa1165800:intron | 35.0% |
| !! | ATTTTTCAGCGGGCAAAAAA+AGG | - | chr7_4:57794702-57794721 | Msa1165800:intron | 35.0% |
| !! | AGAATATTATTTGGTGGTGC+AGG | + | chr7_4:57795134-57795153 | None:intergenic | 35.0% |
| ! | AACAGCATTTGAAGCATCAT+GGG | + | chr7_4:57795188-57795207 | None:intergenic | 35.0% |
| ! | AAACAGCATTTGAAGCATCA+TGG | + | chr7_4:57795189-57795208 | None:intergenic | 35.0% |
| !! | ATGCTGTTTCTTCAATATCC+TGG | - | chr7_4:57795200-57795219 | Msa1165800:intron | 35.0% |
| TCTTCAATATCCTGGATTCA+AGG | - | chr7_4:57795208-57795227 | Msa1165800:intron | 35.0% | |
| ATTCTAACTTCCTTGAATCC+AGG | + | chr7_4:57795221-57795240 | None:intergenic | 35.0% | |
| TGGATTCAAGGAAGTTAGAA+TGG | - | chr7_4:57795220-57795239 | Msa1165800:intron | 35.0% | |
| !! | TATCAACATAGGGTTTTGTG+GGG | + | chr7_4:57795336-57795355 | None:intergenic | 35.0% |
| ! | GTTATCAACATAGGGTTTTG+TGG | + | chr7_4:57795338-57795357 | None:intergenic | 35.0% |
| TCCAACTAATGTTGCAAGAA+AGG | - | chr7_4:57795385-57795404 | Msa1165800:CDS | 35.0% | |
| CTACAATCATACAAGAACCA+AGG | + | chr7_4:57795494-57795513 | None:intergenic | 35.0% | |
| !! | CATGCATTTTTCTTGTTTGG+GGG | - | chr7_4:57795651-57795670 | Msa1165800:five_prime_UTR | 35.0% |
| !!! | TAGATGGTCATGTTTTGAGG+GGG | + | chr7_4:57790560-57790579 | None:intergenic | 40.0% |
| !! | GTAGATGGTCATGTTTTGAG+GGG | + | chr7_4:57790561-57790580 | None:intergenic | 40.0% |
| GTTGAGGTTGTTGATGTAGA+TGG | + | chr7_4:57790576-57790595 | None:intergenic | 40.0% | |
| !! | CACGCTGTTTTCAGTCAATT+TGG | - | chr7_4:57790713-57790732 | Msa1165800:three_prime_UTR | 40.0% |
| TGAAACATAAGGGTCAAGCT+TGG | - | chr7_4:57790768-57790787 | Msa1165800:exon | 40.0% | |
| GAAACATAAGGGTCAAGCTT+GGG | - | chr7_4:57790769-57790788 | Msa1165800:exon | 40.0% | |
| ! | TCAAGCTTGGGTGATTTTTG+AGG | - | chr7_4:57790781-57790800 | Msa1165800:exon | 40.0% |
| CTTCTGCTTCTAATGCTCTT+AGG | - | chr7_4:57790810-57790829 | Msa1165800:CDS | 40.0% | |
| AATGCTCTTAGGCAAATGCA+AGG | - | chr7_4:57790821-57790840 | Msa1165800:CDS | 40.0% | |
| ACCATGGGCTTATCATAGAA+GGG | + | chr7_4:57790851-57790870 | None:intergenic | 40.0% | |
| TACCATGGGCTTATCATAGA+AGG | + | chr7_4:57790852-57790871 | None:intergenic | 40.0% | |
| TCTTGTGATGATTGACACTG+TGG | - | chr7_4:57791243-57791262 | Msa1165800:intron | 40.0% | |
| CCAAACTTTATCCCACTAGA+TGG | + | chr7_4:57791512-57791531 | None:intergenic | 40.0% | |
| CCATCTAGTGGGATAAAGTT+TGG | - | chr7_4:57791509-57791528 | Msa1165800:intron | 40.0% | |
| ATTCTGTTCAATGAGGGAAG+GGG | + | chr7_4:57791579-57791598 | None:intergenic | 40.0% | |
| CTATTCTGTTCAATGAGGGA+AGG | + | chr7_4:57791581-57791600 | None:intergenic | 40.0% | |
| CTTCCCTCATTGAACAGAAT+AGG | - | chr7_4:57791579-57791598 | Msa1165800:intron | 40.0% | |
| CTCCCTATTCTGTTCAATGA+GGG | + | chr7_4:57791585-57791604 | None:intergenic | 40.0% | |
| TCTCCCTATTCTGTTCAATG+AGG | + | chr7_4:57791586-57791605 | None:intergenic | 40.0% | |
| TAGACATAGTGTAGGACACT+AGG | - | chr7_4:57791633-57791652 | Msa1165800:intron | 40.0% | |
| TTTATCCCCAAGTGTTCAAG+TGG | - | chr7_4:57791703-57791722 | Msa1165800:intron | 40.0% | |
| AAACGACCACTTGAACACTT+GGG | + | chr7_4:57791712-57791731 | None:intergenic | 40.0% | |
| AAAACGACCACTTGAACACT+TGG | + | chr7_4:57791713-57791732 | None:intergenic | 40.0% | |
| AAGATCAGCCTATGGATCAA+TGG | + | chr7_4:57791897-57791916 | None:intergenic | 40.0% | |
| !!! | AACACGAAAGTCACTTTTGC+CGG | + | chr7_4:57792028-57792047 | None:intergenic | 40.0% |
| ! | TTGATGGATCCTTGACATTG+GGG | + | chr7_4:57792249-57792268 | None:intergenic | 40.0% |
| ! | CTTGATGGATCCTTGACATT+GGG | + | chr7_4:57792250-57792269 | None:intergenic | 40.0% |
| ! | ACTTGATGGATCCTTGACAT+TGG | + | chr7_4:57792251-57792270 | None:intergenic | 40.0% |
| GTTGACTGTGTCTGATGTTT+AGG | - | chr7_4:57792341-57792360 | Msa1165800:intron | 40.0% | |
| TGACTGTGTCTGATGTTTAG+GGG | - | chr7_4:57792343-57792362 | Msa1165800:intron | 40.0% | |
| ! | TTAAGGGTATGTTAGGATGG+AGG | - | chr7_4:57792385-57792404 | Msa1165800:intron | 40.0% |
| ! | TAAGGGTATGTTAGGATGGA+GGG | - | chr7_4:57792386-57792405 | Msa1165800:intron | 40.0% |
| TATGTTAGGATGGAGGGTTT+AGG | - | chr7_4:57792392-57792411 | Msa1165800:intron | 40.0% | |
| TGTTAAGGGTCTGTTTAGGA+GGG | + | chr7_4:57792573-57792592 | None:intergenic | 40.0% | |
| ATGTTAAGGGTCTGTTTAGG+AGG | + | chr7_4:57792574-57792593 | None:intergenic | 40.0% | |
| !!! | AATTGGGTTTTGGAGGGAAA+GGG | + | chr7_4:57792786-57792805 | None:intergenic | 40.0% |
| !!! | TTTGGGAATTGGGTTTTGGA+GGG | + | chr7_4:57792792-57792811 | None:intergenic | 40.0% |
| GTAGGCTATGTTTGGGAATT+GGG | + | chr7_4:57792802-57792821 | None:intergenic | 40.0% | |
| CAATTCCCAAACATAGCCTA+CGG | - | chr7_4:57792801-57792820 | Msa1165800:intron | 40.0% | |
| AATTCCCAAACATAGCCTAC+GGG | - | chr7_4:57792802-57792821 | Msa1165800:intron | 40.0% | |
| AATCTCATGGCCATTCTTAC+GGG | + | chr7_4:57792831-57792850 | None:intergenic | 40.0% | |
| AGTGAAGGAAGCTAATCTCA+TGG | + | chr7_4:57792844-57792863 | None:intergenic | 40.0% | |
| CAATCTTGTGGCTATGCTTA+TGG | + | chr7_4:57792909-57792928 | None:intergenic | 40.0% | |
| !! | CTAGCTTTGTCACAAGTTTG+TGG | - | chr7_4:57793217-57793236 | Msa1165800:intron | 40.0% |
| ! | GTCTATCTTAATGGATGGTG+TGG | - | chr7_4:57793294-57793313 | Msa1165800:intron | 40.0% |
| ! | TCTTAATGGATGGTGTGGTA+TGG | - | chr7_4:57793299-57793318 | Msa1165800:intron | 40.0% |
| !! | AATTGCTTGATTTGTGCCGT+TGG | - | chr7_4:57793398-57793417 | Msa1165800:intron | 40.0% |
| TTCCCTTAGCTAGCAATCAA+GGG | - | chr7_4:57793672-57793691 | Msa1165800:intron | 40.0% | |
| GGTGGTGTAATTAAGTGGTT+TGG | + | chr7_4:57793705-57793724 | None:intergenic | 40.0% | |
| AAGTCCCACATCAAGTAGTA+TGG | + | chr7_4:57793735-57793754 | None:intergenic | 40.0% | |
| ATACTACTTGATGTGGGACT+TGG | - | chr7_4:57793734-57793753 | Msa1165800:intron | 40.0% | |
| TACTACTTGATGTGGGACTT+GGG | - | chr7_4:57793735-57793754 | Msa1165800:intron | 40.0% | |
| TCTATCAAAGGGGAAGAACA+AGG | - | chr7_4:57793918-57793937 | Msa1165800:intron | 40.0% | |
| ATTGAGTAGTATGGGATGCT+CGG | + | chr7_4:57793960-57793979 | None:intergenic | 40.0% | |
| CATCCCATACTACTCAATGT+GGG | - | chr7_4:57793962-57793981 | Msa1165800:intron | 40.0% | |
| ! | TTTTGTCTGTTTGGACCCAT+CGG | - | chr7_4:57794053-57794072 | Msa1165800:intron | 40.0% |
| CAAACTATTGCACATCCGAT+GGG | + | chr7_4:57794071-57794090 | None:intergenic | 40.0% | |
| ACAAACTATTGCACATCCGA+TGG | + | chr7_4:57794072-57794091 | None:intergenic | 40.0% | |
| GATGTCATAGCAAAAGCAGA+CGG | - | chr7_4:57794187-57794206 | Msa1165800:intron | 40.0% | |
| GAGCTTAAACTTAACAGTGC+AGG | + | chr7_4:57794300-57794319 | None:intergenic | 40.0% | |
| TGCCCAATAATGGCAACAAA+AGG | - | chr7_4:57794386-57794405 | Msa1165800:intron | 40.0% | |
| ! | GGCCTTTTGTTGCCATTATT+GGG | + | chr7_4:57794391-57794410 | None:intergenic | 40.0% |
| ! | TGGCCTTTTGTTGCCATTAT+TGG | + | chr7_4:57794392-57794411 | None:intergenic | 40.0% |
| !! | TTGTTTGGTTTGGTTGCCAA+AGG | - | chr7_4:57794459-57794478 | Msa1165800:intron | 40.0% |
| !! | TGTTTGGTTTGGTTGCCAAA+GGG | - | chr7_4:57794460-57794479 | Msa1165800:intron | 40.0% |
| AGTCTGTTCTTTGCTGATGA+AGG | + | chr7_4:57794570-57794589 | None:intergenic | 40.0% | |
| TAAAAGAGTTGCATCCGTAC+TGG | + | chr7_4:57794619-57794638 | None:intergenic | 40.0% | |
| TGCCCGCTGAAAAATGTAAT+TGG | + | chr7_4:57794697-57794716 | None:intergenic | 40.0% | |
| ! | CAGCTAAATTAGCGTCGTTT+TGG | + | chr7_4:57794733-57794752 | None:intergenic | 40.0% |
| CAAAACGACGCTAATTTAGC+TGG | - | chr7_4:57794731-57794750 | Msa1165800:intron | 40.0% | |
| GTTATCCCAGATACCTTATC+CGG | - | chr7_4:57795079-57795098 | Msa1165800:intron | 40.0% | |
| TTATCCCAGATACCTTATCC+GGG | - | chr7_4:57795080-57795099 | Msa1165800:intron | 40.0% | |
| TATTCCACAAAGGCAATTCC+TGG | + | chr7_4:57795257-57795276 | None:intergenic | 40.0% | |
| GGAATTGCCTTTGTGGAATA+TGG | - | chr7_4:57795257-57795276 | Msa1165800:intron | 40.0% | |
| CTCATCTCCATATTCCACAA+AGG | + | chr7_4:57795267-57795286 | None:intergenic | 40.0% | |
| GCCTTTCTTGCAACATTAGT+TGG | + | chr7_4:57795389-57795408 | None:intergenic | 40.0% | |
| ACTAATGTTGCAAGAAAGGC+AGG | - | chr7_4:57795389-57795408 | Msa1165800:CDS | 40.0% | |
| CGAAGATGAAAGAGAGAGTG+AGG | + | chr7_4:57790494-57790513 | None:intergenic | 45.0% | |
| CCATGGGCTTATCATAGAAG+GGG | + | chr7_4:57790850-57790869 | None:intergenic | 45.0% | |
| ATCTATAGAGGAGACACGAC+TGG | + | chr7_4:57791152-57791171 | None:intergenic | 45.0% | |
| TATCAGATCACTAGAGGTGG+AGG | - | chr7_4:57791370-57791389 | Msa1165800:CDS | 45.0% | |
| TTTATCCCACTAGATGGGGT+TGG | + | chr7_4:57791506-57791525 | None:intergenic | 45.0% | |
| ACTAGAACTGAGTCAGTCCT+TGG | + | chr7_4:57791676-57791695 | None:intergenic | 45.0% | |
| ! | AAGGACTGACTCAGTTCTAG+TGG | - | chr7_4:57791675-57791694 | Msa1165800:intron | 45.0% |
| AACGACCACTTGAACACTTG+GGG | + | chr7_4:57791711-57791730 | None:intergenic | 45.0% | |
| AGCGAAGGAAGCTAATCTCT+TGG | + | chr7_4:57791801-57791820 | None:intergenic | 45.0% | |
| GAGACTGACCATTGATCCAT+AGG | - | chr7_4:57791886-57791905 | Msa1165800:intron | 45.0% | |
| GTCATGATATCTCCGTCCAT+CGG | + | chr7_4:57791920-57791939 | None:intergenic | 45.0% | |
| TGCTCTTGTCTTGTGATGAC+CGG | - | chr7_4:57792006-57792025 | Msa1165800:intron | 45.0% | |
| TTGAGTGTAGGGGAAGGATT+TGG | + | chr7_4:57792102-57792121 | None:intergenic | 45.0% | |
| TGTTCATTGAGTGTAGGGGA+AGG | + | chr7_4:57792108-57792127 | None:intergenic | 45.0% | |
| GTAAAACTGATGCCAAGGAC+TGG | - | chr7_4:57792199-57792218 | Msa1165800:intron | 45.0% | |
| TTAGGATGGAGGGTTTAGGA+GGG | - | chr7_4:57792396-57792415 | Msa1165800:intron | 45.0% | |
| !! | CTGTTTAGGAGGGCTTTAGA+GGG | + | chr7_4:57792563-57792582 | None:intergenic | 45.0% |
| ! | TCTGTTTAGGAGGGCTTTAG+AGG | + | chr7_4:57792564-57792583 | None:intergenic | 45.0% |
| !!! | GAATTGGGTTTTGGAGGGAA+AGG | + | chr7_4:57792787-57792806 | None:intergenic | 45.0% |
| !! | GTTTGGGAATTGGGTTTTGG+AGG | + | chr7_4:57792793-57792812 | None:intergenic | 45.0% |
| CGTAGGCTATGTTTGGGAAT+TGG | + | chr7_4:57792803-57792822 | None:intergenic | 45.0% | |
| GATACCCGTAGGCTATGTTT+GGG | + | chr7_4:57792809-57792828 | None:intergenic | 45.0% | |
| TACATAGGCGGATCTTCTCA+TGG | - | chr7_4:57792937-57792956 | Msa1165800:intron | 45.0% | |
| ! | GTTTTGCAACCCAGAGTTTC+AGG | - | chr7_4:57793080-57793099 | Msa1165800:intron | 45.0% |
| ! | TTTGAATCACGACTTTGGGG+AGG | + | chr7_4:57793121-57793140 | None:intergenic | 45.0% |
| CTTGATTGCTAGCTAAGGGA+AGG | + | chr7_4:57793673-57793692 | None:intergenic | 45.0% | |
| CTTCCCTTAGCTAGCAATCA+AGG | - | chr7_4:57793671-57793690 | Msa1165800:intron | 45.0% | |
| TCCCTTAGCTAGCAATCAAG+GGG | - | chr7_4:57793673-57793692 | Msa1165800:intron | 45.0% | |
| TTGTAAAGAGCTACCGACAG+AGG | + | chr7_4:57793827-57793846 | None:intergenic | 45.0% | |
| TTGGTATCACAACTGGTCGT+CGG | + | chr7_4:57793854-57793873 | None:intergenic | 45.0% | |
| GCATCCCATACTACTCAATG+TGG | - | chr7_4:57793961-57793980 | Msa1165800:intron | 45.0% | |
| GGTCCCACATTGAGTAGTAT+GGG | + | chr7_4:57793968-57793987 | None:intergenic | 45.0% | |
| TGGTCCCACATTGAGTAGTA+TGG | + | chr7_4:57793969-57793988 | None:intergenic | 45.0% | |
| TGCAGAGAATACAGTATGCC+AGG | - | chr7_4:57794155-57794174 | Msa1165800:intron | 45.0% | |
| ! | CAGACGGTACTTTTGTTCCT+CGG | - | chr7_4:57794203-57794222 | Msa1165800:intron | 45.0% |
| ! | AGACGGTACTTTTGTTCCTC+GGG | - | chr7_4:57794204-57794223 | Msa1165800:intron | 45.0% |
| TTCCTCGGGAAAAACGAAAG+AGG | - | chr7_4:57794218-57794237 | Msa1165800:intron | 45.0% | |
| TATTGGGCACTCAGTGAGTT+GGG | + | chr7_4:57794375-57794394 | None:intergenic | 45.0% | |
| TTATTGGGCACTCAGTGAGT+TGG | + | chr7_4:57794376-57794395 | None:intergenic | 45.0% | |
| ACTCACTGAGTGCCCAATAA+TGG | - | chr7_4:57794376-57794395 | Msa1165800:intron | 45.0% | |
| ! | TGTTGTCGGGGGTTTTTGTT+TGG | - | chr7_4:57794444-57794463 | Msa1165800:intron | 45.0% |
| !! | TCGGGGGTTTTTGTTTGGTT+TGG | - | chr7_4:57794449-57794468 | Msa1165800:intron | 45.0% |
| ! | TTTGGTTGCCAAAGGGCTTT+TGG | - | chr7_4:57794467-57794486 | Msa1165800:intron | 45.0% |
| ! | TTGGTTGCCAAAGGGCTTTT+GGG | - | chr7_4:57794468-57794487 | Msa1165800:intron | 45.0% |
| TTCAGCGGGCAAAAAAAGGA+AGG | - | chr7_4:57794706-57794725 | Msa1165800:intron | 45.0% | |
| GACGCTAATTTAGCTGGAAC+TGG | - | chr7_4:57794737-57794756 | Msa1165800:intron | 45.0% | |
| CACCAGCATAAGCAGGATTT+AGG | + | chr7_4:57794763-57794782 | None:intergenic | 45.0% | |
| CTAAATCCTGCTTATGCTGG+TGG | - | chr7_4:57794761-57794780 | Msa1165800:intron | 45.0% | |
| ACAGCAGAGAAACTTACAGC+CGG | + | chr7_4:57794800-57794819 | None:intergenic | 45.0% | |
| ! | CATTTGAAGCATCATGGGAG+TGG | + | chr7_4:57795183-57795202 | None:intergenic | 45.0% |
| AGAATGGTTGAAGCTAAGCC+AGG | - | chr7_4:57795236-57795255 | Msa1165800:intron | 45.0% | |
| TAAGCCAGGAATTGCCTTTG+TGG | - | chr7_4:57795250-57795269 | Msa1165800:intron | 45.0% | |
| AGATGAGATGCAATCCACAG+TGG | - | chr7_4:57795280-57795299 | Msa1165800:intron | 45.0% | |
| AGAGTGAGGTTCTTCACGAC+GGG | + | chr7_4:57790480-57790499 | None:intergenic | 50.0% | |
| GAGAGTGAGGTTCTTCACGA+CGG | + | chr7_4:57790481-57790500 | None:intergenic | 50.0% | |
| TTTGAGGGGGTTCGGGATTA+GGG | + | chr7_4:57790547-57790566 | None:intergenic | 50.0% | |
| !! | TTTTGAGGGGGTTCGGGATT+AGG | + | chr7_4:57790548-57790567 | None:intergenic | 50.0% |
| !!! | GTCATGTTTTGAGGGGGTTC+GGG | + | chr7_4:57790554-57790573 | None:intergenic | 50.0% |
| !!! | GGTCATGTTTTGAGGGGGTT+CGG | + | chr7_4:57790555-57790574 | None:intergenic | 50.0% |
| CCCCTTCTATGATAAGCCCA+TGG | - | chr7_4:57790847-57790866 | Msa1165800:CDS | 50.0% | |
| !! | ACTAGATGGGGTTGGCTACA+TGG | + | chr7_4:57791498-57791517 | None:intergenic | 50.0% |
| ATGTAGCCAACCCCATCTAG+TGG | - | chr7_4:57791497-57791516 | Msa1165800:intron | 50.0% | |
| TGTAGCCAACCCCATCTAGT+GGG | - | chr7_4:57791498-57791517 | Msa1165800:intron | 50.0% | |
| TGTTCAATGAGGGAAGGGGA+GGG | + | chr7_4:57791575-57791594 | None:intergenic | 50.0% | |
| TCCATAGGCTGATCTTCCGA+TGG | - | chr7_4:57791901-57791920 | Msa1165800:intron | 50.0% | |
| TCCATCGGAAGATCAGCCTA+TGG | + | chr7_4:57791905-57791924 | None:intergenic | 50.0% | |
| TAGGCTGATCTTCCGATGGA+CGG | - | chr7_4:57791905-57791924 | Msa1165800:intron | 50.0% | |
| GTTAGGATGGAGGGTTTAGG+AGG | - | chr7_4:57792395-57792414 | Msa1165800:intron | 50.0% | |
| TAGGATGGAGGGTTTAGGAG+GGG | - | chr7_4:57792397-57792416 | Msa1165800:intron | 50.0% | |
| GGATACCCGTAGGCTATGTT+TGG | + | chr7_4:57792810-57792829 | None:intergenic | 50.0% | |
| CATTCTTACGGGATACCCGT+AGG | + | chr7_4:57792820-57792839 | None:intergenic | 50.0% | |
| CTACGGGTATCCCGTAAGAA+TGG | - | chr7_4:57792818-57792837 | Msa1165800:intron | 50.0% | |
| CCCCCTTGATTGCTAGCTAA+GGG | + | chr7_4:57793677-57793696 | None:intergenic | 50.0% | |
| CCCTTAGCTAGCAATCAAGG+GGG | - | chr7_4:57793674-57793693 | Msa1165800:intron | 50.0% | |
| TCCCCCTTGATTGCTAGCTA+AGG | + | chr7_4:57793678-57793697 | None:intergenic | 50.0% | |
| GAGATTTGGGCATTATGGGG+TGG | + | chr7_4:57793989-57794008 | None:intergenic | 50.0% | |
| !! | TGCCTCTTTCGTTTTTCCCG+AGG | + | chr7_4:57794223-57794242 | None:intergenic | 50.0% |
| ! | CGAAAGAGGCACGATGACAA+AGG | - | chr7_4:57794232-57794251 | Msa1165800:intron | 50.0% |
| ! | TGGTTGCCAAAGGGCTTTTG+GGG | - | chr7_4:57794469-57794488 | Msa1165800:intron | 50.0% |
| TCATGACCCCAAAAGCCCTT+TGG | + | chr7_4:57794478-57794497 | None:intergenic | 50.0% | |
| GGCCTAAATCCTGCTTATGC+TGG | - | chr7_4:57794758-57794777 | Msa1165800:intron | 50.0% | |
| CCTGCTTATGCTGGTGGTTA+CGG | - | chr7_4:57794767-57794786 | Msa1165800:intron | 50.0% | |
| TGCAAAGTCCTTGCTACCTG+AGG | - | chr7_4:57795106-57795125 | Msa1165800:intron | 50.0% | |
| ATCATGGGAGTGGTCTCGTT+GGG | + | chr7_4:57795173-57795192 | None:intergenic | 50.0% | |
| TACAAGAACCAAGGCTGCTG+CGG | + | chr7_4:57795485-57795504 | None:intergenic | 50.0% | |
| !! | CGGCAAAGGGTTAGCTTCTC+CGG | - | chr7_4:57790430-57790449 | Msa1165800:three_prime_UTR | 55.0% |
| !! | AAAGGGTTAGCTTCTCCGGC+TGG | - | chr7_4:57790434-57790453 | Msa1165800:three_prime_UTR | 55.0% |
| GGTAAACCCTATGAGCCAGC+CGG | + | chr7_4:57790452-57790471 | None:intergenic | 55.0% | |
| AGTGAGGTTCTTCACGACGG+GGG | + | chr7_4:57790478-57790497 | None:intergenic | 55.0% | |
| GAGTGAGGTTCTTCACGACG+GGG | + | chr7_4:57790479-57790498 | None:intergenic | 55.0% | |
| CTGTTCAATGAGGGAAGGGG+AGG | + | chr7_4:57791576-57791595 | None:intergenic | 55.0% | |
| !!! | GGTTTTGGAGGGAAAGGGAG+GGG | + | chr7_4:57792781-57792800 | None:intergenic | 55.0% |
| !!! | GGGTTTTGGAGGGAAAGGGA+GGG | + | chr7_4:57792782-57792801 | None:intergenic | 55.0% |
| !!! | TGGGTTTTGGAGGGAAAGGG+AGG | + | chr7_4:57792783-57792802 | None:intergenic | 55.0% |
| GGCGGATCTTCTCATGGACA+CGG | - | chr7_4:57792943-57792962 | Msa1165800:intron | 55.0% | |
| TTTCCGCTCTGCTCCTCTGT+CGG | - | chr7_4:57793811-57793830 | Msa1165800:intron | 55.0% | |
| GAGTAGTATGGGATGCTCGG+TGG | + | chr7_4:57793957-57793976 | None:intergenic | 55.0% | |
| CCGTAACCACCAGCATAAGC+AGG | + | chr7_4:57794770-57794789 | None:intergenic | 55.0% | |
| !! | TGGTGGTTACGGTGCTACTC+CGG | - | chr7_4:57794778-57794797 | Msa1165800:intron | 55.0% |
| TCCCAGATACCTTATCCGGG+CGG | - | chr7_4:57795083-57795102 | Msa1165800:intron | 55.0% | |
| ! | ACCGCCCGGATAAGGTATCT+GGG | + | chr7_4:57795087-57795106 | None:intergenic | 55.0% |
| CATCATGGGAGTGGTCTCGT+TGG | + | chr7_4:57795174-57795193 | None:intergenic | 55.0% | |
| GCAATCCACAGTGGCTATGC+AGG | - | chr7_4:57795289-57795308 | Msa1165800:intron | 55.0% | |
| ACAAGAACCAAGGCTGCTGC+GGG | + | chr7_4:57795484-57795503 | None:intergenic | 55.0% | |
| ! | AGCTTCTCCGGCTGGCTCAT+AGG | - | chr7_4:57790442-57790461 | Msa1165800:three_prime_UTR | 60.0% |
| ! | GCTTCTCCGGCTGGCTCATA+GGG | - | chr7_4:57790443-57790462 | Msa1165800:three_prime_UTR | 60.0% |
| GGTTCTTCACGACGGGGGTA+AGG | + | chr7_4:57790473-57790492 | None:intergenic | 60.0% | |
| AGTCGTACTCGGCCAGTCCT+TGG | + | chr7_4:57792214-57792233 | None:intergenic | 60.0% | |
| GACAGAGGAGCAGAGCGGAA+AGG | + | chr7_4:57793812-57793831 | None:intergenic | 60.0% | |
| CTACCGACAGAGGAGCAGAG+CGG | + | chr7_4:57793817-57793836 | None:intergenic | 60.0% | |
| ! | CACCGCCCGGATAAGGTATC+TGG | + | chr7_4:57795088-57795107 | None:intergenic | 60.0% |
| GACTTTGCACCGCCCGGATA+AGG | + | chr7_4:57795095-57795114 | None:intergenic | 60.0% | |
| AGCAAGGACTTTGCACCGCC+CGG | + | chr7_4:57795101-57795120 | None:intergenic | 60.0% | |
| TGCAGGAGCCTCAGGTAGCA+AGG | + | chr7_4:57795117-57795136 | None:intergenic | 60.0% | |
| !! | TTTGGTGGTGCAGGAGCCTC+AGG | + | chr7_4:57795125-57795144 | None:intergenic | 60.0% |
| CTGTTTACCCGCAGCAGCCT+TGG | - | chr7_4:57795474-57795493 | Msa1165800:intron | 60.0% | |
| CAGCGCCTGCATAGCCACTG+TGG | + | chr7_4:57795297-57795316 | None:intergenic | 65.0% | |
| ! | GTGGCTATGCAGGCGCTGCA+AGG | - | chr7_4:57795299-57795318 | Msa1165800:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 57790418 | 57795742 | 57790418 | ID=Msa1165800;Name=Msa1165800 |
| chr7_4 | mRNA | 57790418 | 57795742 | 57790418 | ID=Msa1165800-mRNA-1;Parent=Msa1165800;Name=Msa1165800-mRNA-1;_AED=0.09;_eAED=0.09;_QI=112|1|1|1|0.75|1|5|369|245 |
| chr7_4 | exon | 57790418 | 57791080 | 57790418 | ID=Msa1165800-mRNA-1:exon:17565;Parent=Msa1165800-mRNA-1 |
| chr7_4 | exon | 57791358 | 57791449 | 57791358 | ID=Msa1165800-mRNA-1:exon:17564;Parent=Msa1165800-mRNA-1 |
| chr7_4 | exon | 57791907 | 57792000 | 57791907 | ID=Msa1165800-mRNA-1:exon:17563;Parent=Msa1165800-mRNA-1 |
| chr7_4 | exon | 57795292 | 57795464 | 57795292 | ID=Msa1165800-mRNA-1:exon:17562;Parent=Msa1165800-mRNA-1 |
| chr7_4 | exon | 57795546 | 57795742 | 57795546 | ID=Msa1165800-mRNA-1:exon:17561;Parent=Msa1165800-mRNA-1 |
| chr7_4 | five_prime_UTR | 57795631 | 57795742 | 57795631 | ID=Msa1165800-mRNA-1:five_prime_utr;Parent=Msa1165800-mRNA-1 |
| chr7_4 | CDS | 57795546 | 57795630 | 57795546 | ID=Msa1165800-mRNA-1:cds;Parent=Msa1165800-mRNA-1 |
| chr7_4 | CDS | 57795292 | 57795464 | 57795292 | ID=Msa1165800-mRNA-1:cds;Parent=Msa1165800-mRNA-1 |
| chr7_4 | CDS | 57791907 | 57792000 | 57791907 | ID=Msa1165800-mRNA-1:cds;Parent=Msa1165800-mRNA-1 |
| chr7_4 | CDS | 57791358 | 57791449 | 57791358 | ID=Msa1165800-mRNA-1:cds;Parent=Msa1165800-mRNA-1 |
| chr7_4 | CDS | 57790787 | 57791080 | 57790787 | ID=Msa1165800-mRNA-1:cds;Parent=Msa1165800-mRNA-1 |
| chr7_4 | three_prime_UTR | 57790418 | 57790786 | 57790418 | ID=Msa1165800-mRNA-1:three_prime_utr;Parent=Msa1165800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
