AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1367280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367280 MtrunA17_Chr4g0074811 97.030 303 9 0 52 354 237 539 0.0 608
Msa1367280 MtrunA17_Chr4g0074811 85.455 55 6 2 1 55 1 53 7.21e-23 99.8
Msa1367280 MtrunA17_Chr5g0444171 80.528 303 59 0 52 354 238 540 0.0 523
Msa1367280 MtrunA17_Chr3g0098951 79.032 310 57 2 52 354 230 538 1.71e-178 506
Msa1367280 MtrunA17_Chr4g0074791 77.228 303 58 2 52 354 242 533 4.50e-170 484
Msa1367280 MtrunA17_Chr1g0157131 75.593 295 72 0 52 346 220 514 6.20e-168 478
Msa1367280 MtrunA17_Chr8g0387671 73.064 297 80 0 52 348 212 508 4.57e-163 466
Msa1367280 MtrunA17_Chr5g0397101 72.391 297 81 1 52 348 213 508 3.99e-160 458
Msa1367280 MtrunA17_Chr0c02g0489761 70.486 288 85 0 61 348 233 520 4.54e-151 436
Msa1367280 MtrunA17_Chr5g0441691 71.181 288 83 0 61 348 223 510 2.07e-150 434
Msa1367280 MtrunA17_Chr1g0170281 61.794 301 113 2 52 351 264 563 1.81e-135 398
Msa1367280 MtrunA17_Chr5g0448721 62.373 295 110 1 52 346 242 535 6.03e-133 390
Msa1367280 MtrunA17_Chr1g0176751 61.333 300 115 1 52 351 270 568 8.10e-132 389
Msa1367280 MtrunA17_Chr8g0385341 64.808 287 100 1 60 346 184 469 1.46e-131 385
Msa1367280 MtrunA17_Chr1g0200601 62.369 287 107 1 60 346 184 469 1.63e-131 385
Msa1367280 MtrunA17_Chr3g0131181 62.369 287 107 1 60 346 183 468 4.81e-130 382
Msa1367280 MtrunA17_Chr1g0176421 56.308 325 109 2 52 344 307 630 3.84e-128 381
Msa1367280 MtrunA17_Chr4g0059951 58.784 296 121 1 52 346 219 514 3.34e-125 370
Msa1367280 MtrunA17_Chr7g0267751 56.610 295 127 1 52 346 281 574 4.58e-121 362
Msa1367280 MtrunA17_Chr7g0242561 53.716 296 136 1 52 346 202 497 7.21e-115 343
Msa1367280 MtrunA17_Chr1g0173541 51.389 288 139 1 60 346 206 493 5.08e-108 326
Msa1367280 MtrunA17_Chr4g0033371 49.831 295 148 0 52 346 218 512 1.56e-106 322
Msa1367280 MtrunA17_Chr7g0257751 49.662 296 148 1 52 346 204 499 2.35e-105 319
Msa1367280 MtrunA17_Chr5g0405421 43.878 294 153 3 60 346 255 543 4.40e-84 265
Msa1367280 MtrunA17_Chr5g0444191 75.200 125 28 1 58 182 60 181 2.57e-64 203
Msa1367280 MtrunA17_Chr8g0374701 33.910 289 182 4 60 343 286 570 2.61e-56 192
Msa1367280 MtrunA17_Chr4g0045261 33.564 289 183 4 60 343 295 579 6.36e-56 192
Msa1367280 MtrunA17_Chr5g0402551 33.216 283 180 4 66 343 298 576 1.83e-53 185
Msa1367280 MtrunA17_Chr7g0256001 33.910 289 183 3 60 343 299 584 1.58e-52 183
Msa1367280 MtrunA17_Chr7g0267771 47.475 198 95 2 52 249 234 422 2.12e-52 180
Msa1367280 MtrunA17_Chr7g0276111 32.248 307 191 7 52 348 294 593 4.91e-49 173
Msa1367280 MtrunA17_Chr3g0127571 36.863 255 153 4 60 309 296 547 1.17e-48 172
Msa1367280 MtrunA17_Chr8g0355131 30.164 305 182 7 67 344 208 508 3.89e-37 140
Msa1367280 MtrunA17_Chr1g0203881 55.238 105 47 0 60 164 195 299 3.85e-34 131
Msa1367280 MtrunA17_Chr5g0441771 57.692 104 24 1 130 233 18 101 6.93e-31 113
Msa1367280 MtrunA17_Chr1g0190131 45.946 111 59 1 61 170 160 270 4.89e-30 115
Msa1367280 MtrunA17_Chr5g0441781 68.421 76 24 0 273 348 1 76 5.71e-30 110
Msa1367280 MtrunA17_Chr5g0440931 40.136 147 84 3 200 343 1 146 3.53e-27 104
Msa1367280 MtrunA17_Chr3g0093271 39.456 147 85 3 200 343 52 197 8.72e-27 105
Msa1367280 MtrunA17_Chr6g0460211 39.456 147 85 3 200 343 1 146 1.01e-26 103
Msa1367280 MtrunA17_Chr7g0254731 38.776 147 86 3 200 343 1 146 1.80e-26 102
Msa1367280 MtrunA17_Chr1g0166281 37.584 149 89 3 200 345 1 148 5.12e-26 101
Msa1367280 MtrunA17_Chr3g0132591 45.192 104 57 0 61 164 257 360 3.09e-24 103
Msa1367280 MtrunA17_Chr1g0188171 36.242 149 91 3 200 345 1 148 1.33e-23 95.1
Msa1367280 MtrunA17_Chr7g0274941 40.351 114 66 1 61 172 169 282 1.51e-23 99.0
Msa1367280 MtrunA17_Chr1g0185001 33.562 146 94 2 200 343 1 145 6.09e-21 87.8
Msa1367280 MtrunA17_Chr4g0062221 36.364 143 83 3 207 343 7 147 2.09e-19 84.3
Msa1367280 MtrunA17_Chr4g0033601 35.461 141 83 4 212 346 6 144 2.75e-19 83.6
Msa1367280 MtrunA17_Chr4g0001331 38.760 129 67 4 41 167 159 277 2.31e-18 85.9
Msa1367280 MtrunA17_Chr4g0069301 37.705 122 64 5 48 167 173 284 2.36e-18 85.9
Msa1367280 MtrunA17_Chr5g0434951 37.226 137 77 4 212 343 5 137 5.88e-18 79.7
Msa1367280 MtrunA17_Chr8g0351491 36.190 105 64 2 65 168 169 271 6.13e-18 82.8
Msa1367280 MtrunA17_Chr8g0391691 36.111 144 82 4 212 349 37 176 1.05e-17 80.1
Msa1367280 MtrunA17_Chr7g0245231 34.483 145 91 3 204 345 23 166 1.98e-17 79.0
Msa1367280 MtrunA17_Chr3g0125381 36.190 105 64 2 65 168 108 210 2.41e-17 79.7
Msa1367280 MtrunA17_Chr3g0140631 37.037 108 65 2 65 171 190 295 2.73e-17 81.3
Msa1367280 MtrunA17_Chr1g0205421 37.607 117 61 4 53 167 163 269 2.03e-16 80.1
Msa1367280 MtrunA17_Chr1g0169581 34.752 141 78 4 212 343 5 140 2.24e-16 75.1
Msa1367280 MtrunA17_Chr1g0150321 41.176 102 54 4 68 167 173 270 4.14e-16 79.0
Msa1367280 MtrunA17_Chr8g0368681 32.414 145 90 3 205 343 6 148 4.57e-16 75.1
Msa1367280 MtrunA17_Chr2g0304111 37.069 116 62 5 59 167 170 281 5.16e-16 79.0
Msa1367280 MtrunA17_Chr4g0064231 34.194 155 82 3 212 346 65 219 5.29e-16 76.3
Msa1367280 MtrunA17_Chr8g0353621 35.644 101 62 2 65 164 163 261 6.26e-16 77.0
Msa1367280 MtrunA17_Chr8g0366401 31.333 150 94 3 204 346 10 157 6.52e-16 74.7
Msa1367280 MtrunA17_Chr7g0256171 34.286 140 86 3 212 346 6 144 9.00e-16 73.9
Msa1367280 MtrunA17_Chr8g0346071 41.121 107 57 4 63 167 171 273 1.20e-15 77.8
Msa1367280 MtrunA17_Chr6g0450921 35.417 144 84 5 212 349 30 170 1.29e-15 73.9
Msa1367280 MtrunA17_Chr8g0392951 33.803 142 87 4 212 349 25 163 1.61e-15 73.6
Msa1367280 MtrunA17_Chr6g0482731 34.559 136 83 3 212 343 27 160 1.63e-15 73.6
Msa1367280 MtrunA17_Chr3g0111371 34.028 144 82 5 204 343 1 135 1.99e-15 72.4
Msa1367280 MtrunA17_Chr4g0063881 42.157 102 53 4 68 167 170 267 3.16e-15 76.6
Msa1367280 MtrunA17_Chr2g0329371 31.915 141 90 2 212 346 65 205 4.21e-15 73.6
Msa1367280 MtrunA17_Chr4g0044961 28.409 176 120 3 177 349 23 195 5.01e-15 72.8
Msa1367280 MtrunA17_Chr7g0244561 32.374 139 81 6 60 192 170 301 5.87e-15 75.5
Msa1367280 MtrunA17_Chr1g0161211 35.294 136 82 3 212 343 47 180 7.19e-15 72.4
Msa1367280 MtrunA17_Chr6g0453681 38.318 107 60 2 61 165 170 272 1.02e-14 75.1
Msa1367280 MtrunA17_Chr6g0468751 28.365 208 112 6 61 255 170 353 1.02e-14 75.1
Msa1367280 MtrunA17_Chr7g0245911 33.333 147 85 4 212 346 48 193 1.15e-14 72.0
Msa1367280 MtrunA17_Chr8g0346081 39.815 108 59 4 62 167 170 273 1.87e-14 74.3
Msa1367280 MtrunA17_Chr4g0008561 32.500 120 78 3 58 175 169 287 2.32e-14 74.3
Msa1367280 MtrunA17_Chr5g0398751 32.653 147 93 4 200 343 1 144 2.49e-14 69.7
Msa1367280 MtrunA17_Chr2g0333821 35.659 129 71 5 41 167 153 271 2.54e-14 73.9
Msa1367280 MtrunA17_Chr4g0013131 39.091 110 58 5 68 175 172 274 2.83e-14 73.6
Msa1367280 MtrunA17_Chr3g0100541 30.464 151 90 2 197 346 38 174 3.14e-14 70.1
Msa1367280 MtrunA17_Chr3g0132671 36.697 109 63 2 61 167 200 304 3.33e-14 73.6
Msa1367280 MtrunA17_Chr3g0125311 33.784 148 80 4 212 343 14 159 4.45e-14 69.3
Msa1367280 MtrunA17_Chr2g0284011 33.945 109 66 3 68 174 172 276 5.19e-14 72.8
Msa1367280 MtrunA17_Chr2g0302431 37.255 102 58 4 68 167 181 278 5.45e-14 72.8
Msa1367280 MtrunA17_Chr6g0453671 38.318 107 60 2 61 165 170 272 5.52e-14 72.4
Msa1367280 MtrunA17_Chr5g0441011 38.614 101 56 4 68 166 174 270 6.05e-14 72.8
Msa1367280 MtrunA17_Chr5g0432491 37.864 103 58 4 67 167 183 281 6.85e-14 72.4
Msa1367280 MtrunA17_Chr6g0478601 37.273 110 56 4 65 166 298 402 1.24e-13 72.0
Msa1367280 MtrunA17_Chr5g0399911 35.577 104 63 3 65 164 172 275 1.42e-13 70.9
Msa1367280 MtrunA17_Chr7g0274101 32.653 147 95 3 200 343 1 146 1.90e-13 67.4
Msa1367280 MtrunA17_Chr7g0244521 37.273 110 60 4 68 175 172 274 2.28e-13 70.9
Msa1367280 MtrunA17_Chr3g0131061 33.654 104 65 3 65 164 157 260 4.63e-13 69.3
Msa1367280 MtrunA17_Chr8g0380661 35.185 108 56 5 65 163 154 256 5.91e-13 68.9
Msa1367280 MtrunA17_Chr4g0057651 33.071 127 80 2 220 343 15 139 6.33e-13 65.5
Msa1367280 MtrunA17_Chr8g0338741 29.814 161 95 5 6 165 201 344 8.99e-13 68.9
Msa1367280 MtrunA17_Chr3g0131501 29.655 145 95 3 196 339 19 157 1.13e-12 68.9
Msa1367280 MtrunA17_Chr8g0369111 26.087 184 111 3 178 339 28 208 1.41e-12 66.6
Msa1367280 MtrunA17_Chr1g0160151 32.877 146 76 5 212 343 23 160 1.42e-12 65.1
Msa1367280 MtrunA17_Chr8g0381821 35.577 104 63 3 65 164 157 260 1.54e-12 67.8
Msa1367280 MtrunA17_Chr8g0385571 28.302 159 106 4 196 353 41 192 1.55e-12 68.6
Msa1367280 MtrunA17_Chr4g0057661 33.071 127 80 2 220 343 15 139 1.61e-12 64.3
Msa1367280 MtrunA17_Chr5g0428981 36.792 106 62 3 65 166 949 1053 1.65e-12 68.9
Msa1367280 MtrunA17_Chr1g0170551 34.286 105 64 3 63 166 159 259 1.65e-12 68.9
Msa1367280 MtrunA17_Chr8g0385281 33.654 104 65 3 65 164 158 261 2.47e-12 67.4
Msa1367280 MtrunA17_Chr8g0373691 28.105 153 104 3 195 343 37 187 2.49e-12 65.1
Msa1367280 MtrunA17_Chr2g0277501 33.654 104 65 3 65 164 157 260 2.63e-12 67.0
Msa1367280 MtrunA17_Chr7g0256701 31.206 141 86 4 212 343 74 212 2.65e-12 65.5
Msa1367280 MtrunA17_Chr7g0245371 28.378 148 92 2 212 345 25 172 2.67e-12 64.7
Msa1367280 MtrunA17_Chr4g0018201 36.792 106 62 3 65 166 945 1049 2.85e-12 68.2
Msa1367280 MtrunA17_Chr2g0284031 31.776 107 67 4 63 167 186 288 3.17e-12 67.4
Msa1367280 MtrunA17_Chr4g0057641 31.061 132 86 2 215 343 10 139 3.99e-12 63.2
Msa1367280 MtrunA17_Chr4g0055451 35.238 105 62 4 65 164 158 261 5.89e-12 65.9
Msa1367280 MtrunA17_Chr5g0402361 29.412 136 95 1 212 346 49 184 6.18e-12 66.2
Msa1367280 MtrunA17_Chr8g0351681 29.139 151 97 3 207 347 45 195 7.59e-12 63.9
Msa1367280 MtrunA17_Chr7g0225921 30.827 133 86 3 215 343 10 140 8.17e-12 62.4
Msa1367280 MtrunA17_Chr2g0299781 32.374 139 81 5 39 166 286 422 1.03e-11 65.9
Msa1367280 MtrunA17_Chr3g0100511 27.517 149 93 2 197 344 38 172 1.37e-11 62.8
Msa1367280 MtrunA17_Chr1g0153321 40.385 104 53 5 68 165 309 409 1.44e-11 65.5
Msa1367280 MtrunA17_Chr3g0123791 34.615 104 64 3 65 164 158 261 2.04e-11 64.3
Msa1367280 MtrunA17_Chr7g0227331 32.692 104 63 3 67 165 472 573 2.65e-11 64.7
Msa1367280 MtrunA17_Chr1g0167311 36.275 102 59 4 68 165 316 415 5.45e-11 63.9
Msa1367280 MtrunA17_Chr5g0402331 29.197 137 95 2 212 346 49 185 5.57e-11 61.2
Msa1367280 MtrunA17_Chr5g0426521 33.945 109 58 4 65 164 157 260 6.75e-11 62.8
Msa1367280 MtrunA17_Chr7g0234641 38.235 102 53 3 67 165 241 335 7.88e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367280 AT4G04720.2 81.250 304 55 2 52 354 226 528 0.0 518
Msa1367280 AT4G04720.1 81.250 304 55 2 52 354 226 528 0.0 518
Msa1367280 AT4G21940.1 79.344 305 60 2 52 354 248 551 0.0 514
Msa1367280 AT3G20410.2 79.264 299 62 0 52 350 237 535 0.0 513
Msa1367280 AT3G20410.1 79.264 299 62 0 52 350 237 535 0.0 513
Msa1367280 AT4G21940.2 79.344 305 60 2 52 354 248 551 0.0 513
Msa1367280 AT1G50700.1 78.878 303 64 0 52 354 219 521 0.0 511
Msa1367280 AT1G50700.2 72.644 329 64 1 52 354 219 547 5.95e-175 497
Msa1367280 AT1G61950.1 75.850 294 70 1 61 353 254 547 1.64e-165 474
Msa1367280 AT1G76040.1 72.727 297 80 1 56 352 24 319 2.06e-164 462
Msa1367280 AT1G76040.4 72.727 297 80 1 56 352 24 319 2.06e-164 462
Msa1367280 AT1G76040.2 73.973 292 75 1 61 352 267 557 2.71e-160 461
Msa1367280 AT4G04740.4 74.825 286 71 1 61 346 224 508 4.63e-160 459
Msa1367280 AT4G04740.6 74.825 286 71 1 61 346 224 508 4.63e-160 459
Msa1367280 AT4G04740.5 74.825 286 71 1 61 346 224 508 4.63e-160 459
Msa1367280 AT4G04740.3 74.825 286 71 1 61 346 224 508 4.63e-160 459
Msa1367280 AT4G04740.1 74.825 286 71 1 61 346 224 508 4.63e-160 459
Msa1367280 AT4G04740.7 74.825 286 71 1 61 346 224 508 4.63e-160 459
Msa1367280 AT4G23650.1 70.100 301 90 0 52 352 224 524 7.55e-159 456
Msa1367280 AT5G19360.1 70.307 293 87 0 60 352 222 514 4.41e-152 438
Msa1367280 AT5G12180.1 69.966 293 88 0 60 352 227 519 5.46e-151 436
Msa1367280 AT4G04740.2 74.815 270 67 1 61 330 224 492 1.41e-149 432
Msa1367280 AT4G04710.2 71.769 294 74 3 61 353 195 480 4.46e-149 429
Msa1367280 AT4G04710.3 71.769 294 74 3 61 353 181 466 4.49e-149 429
Msa1367280 AT4G04710.1 68.387 310 88 3 52 353 186 493 2.32e-148 428
Msa1367280 AT4G21940.3 83.966 237 37 1 61 297 257 492 1.63e-147 426
Msa1367280 AT1G50700.3 80.894 246 47 0 52 297 219 464 1.73e-147 425
Msa1367280 AT4G04710.4 67.949 312 88 4 52 353 186 495 2.92e-146 423
Msa1367280 AT4G04695.1 66.221 299 100 1 52 350 178 475 6.99e-141 409
Msa1367280 AT5G04870.1 62.583 302 112 1 52 353 296 596 6.60e-136 400
Msa1367280 AT4G04700.1 63.607 305 108 2 52 354 178 481 9.83e-136 395
Msa1367280 AT2G17290.1 62.373 295 110 1 52 346 231 524 1.37e-135 397
Msa1367280 AT2G17290.2 62.373 295 110 1 52 346 231 524 1.37e-135 397
Msa1367280 AT3G10660.2 62.252 302 113 1 52 353 332 632 1.75e-134 398
Msa1367280 AT3G10660.1 62.252 302 113 1 52 353 332 632 1.75e-134 398
Msa1367280 AT1G76040.3 75.314 239 58 1 61 299 267 504 1.15e-131 386
Msa1367280 AT4G38230.1 59.122 296 120 1 52 347 26 320 2.71e-131 379
Msa1367280 AT2G38910.1 60.751 293 114 1 52 344 280 571 1.73e-130 385
Msa1367280 AT4G35310.2 60.339 295 116 1 52 346 243 536 6.14e-130 383
Msa1367280 AT4G35310.1 60.339 295 116 1 52 346 243 536 6.14e-130 383
Msa1367280 AT4G38230.4 59.122 296 120 1 52 347 170 464 1.17e-129 380
Msa1367280 AT4G38230.3 59.122 296 120 1 52 347 170 464 1.17e-129 380
Msa1367280 AT1G35670.1 62.021 287 108 1 60 346 180 465 3.51e-129 379
Msa1367280 AT4G38230.2 59.122 296 120 1 52 347 200 494 3.98e-129 380
Msa1367280 AT4G09570.1 61.324 287 110 1 60 346 179 464 1.65e-127 375
Msa1367280 AT5G23580.1 58.362 293 121 1 52 344 168 459 1.05e-123 365
Msa1367280 AT3G51850.1 54.054 296 135 1 52 346 200 495 1.88e-116 348
Msa1367280 AT1G74740.1 53.378 296 137 1 52 346 205 500 6.46e-114 342
Msa1367280 AT1G18890.1 53.041 296 138 1 52 346 209 504 1.86e-111 335
Msa1367280 AT5G12480.2 51.515 297 142 1 52 346 111 407 6.59e-111 330
Msa1367280 AT5G12480.1 51.515 297 142 1 52 346 205 501 1.14e-109 330
Msa1367280 AT5G19450.2 51.178 297 143 2 52 346 203 499 8.92e-108 325
Msa1367280 AT5G19450.1 51.178 297 143 2 52 346 203 499 8.92e-108 325
Msa1367280 AT3G51850.2 53.047 279 130 1 52 329 200 478 1.27e-106 322
Msa1367280 AT3G57530.1 49.831 295 148 0 52 346 209 503 2.33e-105 320
Msa1367280 AT2G31500.1 49.164 299 148 1 52 346 212 510 3.64e-103 315
Msa1367280 AT2G41860.1 49.662 296 148 1 52 346 200 495 4.87e-103 313
Msa1367280 AT2G41860.2 49.662 296 148 1 52 346 200 495 8.73e-103 313
Msa1367280 AT2G17890.1 43.098 297 157 3 57 346 261 552 2.68e-83 264
Msa1367280 AT2G35890.2 51.724 232 111 1 52 282 278 509 1.22e-82 260
Msa1367280 AT2G35890.1 51.724 232 111 1 52 282 278 509 1.22e-82 260
Msa1367280 AT3G51850.3 53.456 217 101 0 52 268 200 416 4.55e-82 256
Msa1367280 AT5G66210.1 42.517 294 157 4 60 346 218 506 7.44e-81 256
Msa1367280 AT5G66210.2 42.517 294 157 4 60 346 218 506 7.44e-81 256
Msa1367280 AT4G36070.1 41.497 294 160 3 60 346 227 515 1.97e-79 253
Msa1367280 AT4G36070.2 41.497 294 160 3 60 346 227 515 5.43e-79 252
Msa1367280 AT5G66210.3 45.098 255 133 3 60 307 218 472 1.95e-75 241
Msa1367280 AT5G66210.5 45.238 252 131 3 60 304 218 469 3.84e-75 240
Msa1367280 AT3G57530.2 51.208 207 101 0 52 258 209 415 1.73e-73 234
Msa1367280 AT5G66210.6 46.701 197 104 1 60 255 218 414 2.65e-61 202
Msa1367280 AT5G66210.4 46.701 197 104 1 60 255 218 414 2.65e-61 202
Msa1367280 AT3G50530.1 32.872 289 185 4 60 343 306 590 2.10e-56 194
Msa1367280 AT3G50530.2 33.216 283 180 4 66 343 343 621 5.85e-56 193
Msa1367280 AT3G19100.1 33.564 289 183 4 60 343 302 586 8.56e-54 187
Msa1367280 AT1G49580.1 32.526 289 187 3 60 343 308 593 1.20e-53 186
Msa1367280 AT2G41140.1 32.180 289 187 4 60 343 281 565 1.89e-49 174
Msa1367280 AT3G56760.1 31.834 289 188 4 60 343 282 566 1.20e-48 172
Msa1367280 AT3G49370.1 34.420 276 168 6 66 336 306 573 5.99e-45 162
Msa1367280 AT2G46700.2 32.362 309 193 6 40 343 104 401 3.43e-44 157
Msa1367280 AT2G46700.3 32.362 309 193 6 40 343 104 401 3.43e-44 157
Msa1367280 AT2G46700.1 32.362 309 193 6 40 343 285 582 2.43e-43 158
Msa1367280 AT5G24430.1 34.940 249 154 4 66 309 307 552 4.18e-43 157
Msa1367280 AT1G12580.1 48.718 117 60 0 60 176 198 314 6.98e-34 131
Msa1367280 AT1G08650.1 40.800 125 73 1 52 175 160 284 2.59e-29 114
Msa1367280 AT1G12680.1 49.038 104 53 0 61 164 252 355 1.35e-27 113
Msa1367280 AT1G66410.1 40.136 147 84 3 200 343 1 146 3.68e-27 105
Msa1367280 AT5G37780.1 40.136 147 84 3 200 343 1 146 3.68e-27 105
Msa1367280 AT5G21274.1 39.456 147 85 3 200 343 1 146 8.73e-27 103
Msa1367280 AT3G56800.1 39.456 147 85 3 200 343 1 146 1.09e-26 103
Msa1367280 AT2G41110.1 39.456 147 85 3 200 343 1 146 1.09e-26 103
Msa1367280 AT2G27030.1 39.456 147 85 3 200 343 1 146 1.09e-26 103
Msa1367280 AT3G43810.1 39.456 147 85 3 200 343 1 146 1.39e-26 103
Msa1367280 AT2G27030.3 39.456 147 85 3 200 343 1 146 1.91e-26 104
Msa1367280 AT3G43810.2 39.456 147 85 3 200 343 1 146 4.02e-26 104
Msa1367280 AT3G04530.1 45.045 111 60 1 59 168 163 273 9.69e-26 104
Msa1367280 AT2G41110.2 36.025 161 87 4 200 345 1 160 9.72e-24 96.3
Msa1367280 AT5G37780.2 36.420 162 84 4 200 343 1 161 2.41e-23 95.5
Msa1367280 AT1G08650.2 39.655 116 67 2 52 166 160 273 3.52e-23 97.8
Msa1367280 AT3G59440.1 37.681 138 83 1 212 346 52 189 1.42e-22 94.4
Msa1367280 AT1G66410.2 37.580 157 84 4 200 343 1 156 1.98e-22 92.8
Msa1367280 AT5G37780.3 34.682 173 83 4 200 343 1 172 3.11e-22 92.8
Msa1367280 AT3G22930.1 36.364 143 87 3 204 343 28 169 5.93e-22 92.0
Msa1367280 AT5G37780.4 40.984 122 68 3 225 343 13 133 1.08e-21 90.1
Msa1367280 AT4G14640.1 36.806 144 85 4 204 343 6 147 1.70e-20 87.4
Msa1367280 AT1G05990.1 36.429 140 84 2 212 346 6 145 1.78e-20 87.0
Msa1367280 AT2G43290.1 35.417 144 84 2 212 346 66 209 1.88e-20 89.0
Msa1367280 AT2G41100.7 31.953 169 96 3 198 347 53 221 4.09e-20 89.7
Msa1367280 AT2G41100.7 33.083 133 70 5 239 352 5 137 1.13e-12 68.2
Msa1367280 AT2G41100.6 31.953 169 96 3 198 347 53 221 4.09e-20 89.7
Msa1367280 AT2G41100.6 33.083 133 70 5 239 352 5 137 1.13e-12 68.2
Msa1367280 AT2G41100.3 31.953 169 96 3 198 347 53 221 4.09e-20 89.7
Msa1367280 AT2G41100.3 33.083 133 70 5 239 352 5 137 1.13e-12 68.2
Msa1367280 AT2G41100.4 31.953 169 96 3 198 347 88 256 6.90e-20 89.4
Msa1367280 AT2G41100.4 32.558 172 97 5 200 352 1 172 4.30e-19 87.4
Msa1367280 AT2G41100.1 31.953 169 96 3 198 347 88 256 6.90e-20 89.4
Msa1367280 AT2G41100.1 32.558 172 97 5 200 352 1 172 4.30e-19 87.4
Msa1367280 AT3G50360.1 35.417 144 89 3 204 344 20 162 8.23e-19 83.2
Msa1367280 AT1G66410.4 40.741 108 60 3 239 343 4 110 1.17e-18 80.9
Msa1367280 AT1G66410.3 40.741 108 60 3 239 343 4 110 1.17e-18 80.9
Msa1367280 AT1G32250.1 31.847 157 95 3 200 346 5 159 1.78e-18 82.0
Msa1367280 AT3G43810.4 40.741 108 60 3 239 343 4 110 1.91e-18 80.5
Msa1367280 AT3G43810.3 40.741 108 60 3 239 343 4 110 1.91e-18 80.5
Msa1367280 AT2G45490.1 38.614 101 59 2 65 164 175 273 4.46e-18 84.0
Msa1367280 AT1G18530.1 34.028 144 87 3 206 343 2 143 8.52e-18 80.1
Msa1367280 AT2G41090.1 34.247 146 91 3 200 343 1 143 8.93e-18 80.9
Msa1367280 AT4G14640.2 38.211 123 70 4 225 343 9 129 9.07e-18 79.3
Msa1367280 AT4G03290.1 33.099 142 88 2 212 346 6 147 1.60e-17 79.3
Msa1367280 AT3G25600.1 33.333 150 92 3 200 343 1 148 1.81e-17 79.3
Msa1367280 AT1G30270.3 37.815 119 63 5 59 170 81 195 2.51e-17 82.8
Msa1367280 AT1G30270.1 37.815 119 63 5 59 170 178 292 3.43e-17 82.8
Msa1367280 AT1G30270.2 37.815 119 63 5 59 170 178 292 4.28e-17 82.8
Msa1367280 AT2G25090.1 42.574 101 52 4 68 166 184 280 6.66e-17 82.0
Msa1367280 AT2G25880.4 37.037 108 65 2 65 171 191 296 1.33e-16 79.7
Msa1367280 AT2G25880.2 37.037 108 65 2 65 171 146 251 1.47e-16 79.0
Msa1367280 AT2G25880.1 37.037 108 65 2 65 171 178 283 1.60e-16 79.3
Msa1367280 AT5G25110.1 39.130 115 59 4 59 166 189 299 1.62e-16 80.9
Msa1367280 AT5G10930.1 35.652 115 63 4 59 166 159 269 2.06e-16 80.5
Msa1367280 AT1G66400.1 32.903 155 89 5 200 343 1 151 2.09e-16 76.3
Msa1367280 AT4G32830.1 37.963 108 64 2 65 171 184 289 2.45e-16 79.0
Msa1367280 AT4G12860.1 34.532 139 87 2 212 346 6 144 2.66e-16 75.9
Msa1367280 AT2G25880.3 37.037 108 65 2 65 171 239 344 3.53e-16 79.0
Msa1367280 AT4G37010.1 32.877 146 90 4 204 344 20 162 5.52e-16 75.1
Msa1367280 AT4G37010.2 32.877 146 90 4 204 344 24 166 6.21e-16 75.1
Msa1367280 AT5G39440.1 40.000 105 58 2 61 164 170 270 6.28e-16 79.3
Msa1367280 AT2G15680.1 31.034 145 94 3 204 345 43 184 7.07e-16 75.5
Msa1367280 AT1G45160.2 36.585 123 63 5 51 165 841 956 1.44e-15 78.6
Msa1367280 AT4G30960.1 35.897 117 68 5 68 181 184 296 1.45e-15 77.8
Msa1367280 AT3G01090.3 39.252 107 59 2 61 165 170 272 1.80e-15 77.8
Msa1367280 AT3G01090.1 39.252 107 59 2 61 165 170 272 1.80e-15 77.8
Msa1367280 AT1G45160.1 36.585 123 63 5 51 165 841 956 2.00e-15 78.2
Msa1367280 AT3G01090.2 39.252 107 59 2 61 165 193 295 2.01e-15 77.8
Msa1367280 AT1G24620.1 34.266 143 88 3 208 346 34 174 2.11e-15 73.9
Msa1367280 AT3G07490.1 34.286 140 86 3 212 346 6 144 2.22e-15 73.2
Msa1367280 AT5G62310.1 38.889 108 53 4 67 166 943 1045 2.96e-15 77.8
Msa1367280 AT5G37770.1 32.168 143 87 4 212 346 18 158 3.05e-15 73.2
Msa1367280 AT5G37770.2 32.168 143 87 4 212 346 18 158 3.05e-15 73.2
Msa1367280 AT2G30360.1 32.143 140 84 5 60 192 175 310 5.12e-15 76.3
Msa1367280 AT3G51920.1 31.507 146 98 2 200 343 1 146 9.73e-15 71.2
Msa1367280 AT3G29160.3 39.252 107 59 2 61 165 171 273 2.15e-14 73.9
Msa1367280 AT3G29160.1 39.252 107 59 2 61 165 171 273 2.98e-14 74.3
Msa1367280 AT3G29160.2 39.252 107 59 2 61 165 171 273 2.98e-14 74.3
Msa1367280 AT4G26470.1 25.604 207 129 4 153 339 5 206 3.31e-14 71.6
Msa1367280 AT1G01140.3 37.255 102 58 4 68 167 180 277 3.67e-14 73.6
Msa1367280 AT4G26470.3 25.561 223 139 5 139 339 52 269 3.78e-14 72.4
Msa1367280 AT1G01140.1 37.255 102 58 4 68 167 180 277 3.87e-14 73.6
Msa1367280 AT2G26980.1 39.604 101 55 4 68 166 175 271 4.25e-14 73.2
Msa1367280 AT1G01140.2 35.294 102 62 3 68 167 180 279 5.35e-14 73.2
Msa1367280 AT5G58380.1 35.965 114 67 4 68 179 172 281 6.82e-14 73.2
Msa1367280 AT4G40010.1 39.252 107 61 4 65 167 157 263 7.60e-14 72.4
Msa1367280 AT2G36180.1 28.369 141 92 3 212 345 1 139 7.95e-14 68.6
Msa1367280 AT1G73630.1 31.387 137 86 4 212 345 21 152 9.53e-14 68.9
Msa1367280 AT1G18210.2 32.331 133 86 3 212 343 24 153 1.19e-13 68.9
Msa1367280 AT1G18210.1 32.331 133 86 3 212 343 24 153 1.19e-13 68.9
Msa1367280 AT3G22930.2 34.314 102 66 1 204 304 28 129 1.29e-13 67.8
Msa1367280 AT5G01810.1 34.314 102 61 3 68 167 172 269 1.34e-13 72.0
Msa1367280 AT5G01810.2 34.314 102 61 3 68 167 172 269 1.34e-13 72.0
Msa1367280 AT5G01810.3 34.314 102 61 3 68 167 172 269 1.34e-13 71.6
Msa1367280 AT5G57630.3 28.283 198 122 6 61 255 74 254 1.39e-13 71.2
Msa1367280 AT5G42380.1 31.206 141 90 3 209 344 47 185 1.50e-13 68.9
Msa1367280 AT4G18700.1 35.514 107 63 4 63 167 181 283 1.55e-13 72.0
Msa1367280 AT1G48490.4 37.273 110 56 4 65 166 1010 1114 1.81e-13 72.4
Msa1367280 AT1G48490.3 37.273 110 56 4 65 166 1009 1113 2.01e-13 72.0
Msa1367280 AT1G48490.2 37.273 110 56 4 65 166 1009 1113 2.01e-13 72.0
Msa1367280 AT1G48490.1 37.273 110 56 4 65 166 1009 1113 2.01e-13 72.0
Msa1367280 AT5G35410.2 37.736 106 60 4 62 165 164 265 2.24e-13 70.9
Msa1367280 AT5G21326.1 38.614 101 56 4 68 166 174 270 2.48e-13 71.2
Msa1367280 AT3G61960.1 34.188 117 75 2 58 172 160 276 2.70e-13 71.2
Msa1367280 AT3G17510.2 26.222 225 124 6 68 263 101 312 2.72e-13 70.9
Msa1367280 AT3G17510.1 26.222 225 124 6 68 263 181 392 2.80e-13 70.9
Msa1367280 AT3G61960.2 34.188 117 75 2 58 172 160 276 3.02e-13 71.2
Msa1367280 AT5G35410.1 37.736 106 60 4 62 165 164 265 3.94e-13 70.5
Msa1367280 AT3G17850.1 37.273 110 56 4 65 166 1069 1173 4.00e-13 71.2
Msa1367280 AT5G57630.2 28.788 198 121 7 61 255 162 342 4.31e-13 70.5
Msa1367280 AT5G57630.1 28.788 198 121 7 61 255 162 342 4.72e-13 70.1
Msa1367280 AT5G45810.1 35.514 107 63 5 63 167 183 285 6.02e-13 70.1
Msa1367280 AT2G41100.2 32.031 128 68 3 239 347 4 131 6.89e-13 67.4
Msa1367280 AT3G10190.1 30.827 133 85 3 216 343 75 205 7.84e-13 67.4
Msa1367280 AT1G48260.2 31.361 169 85 5 68 210 87 250 9.17e-13 68.9
Msa1367280 AT1G48260.4 31.361 169 85 5 68 210 87 250 9.17e-13 68.9
Msa1367280 AT1G48260.3 31.361 169 85 5 68 210 87 250 9.17e-13 68.9
Msa1367280 AT1G48260.5 31.361 169 85 5 68 210 87 250 9.17e-13 68.9
Msa1367280 AT5G45820.1 33.028 109 67 4 68 174 172 276 1.12e-12 69.3
Msa1367280 AT5G07070.1 38.235 102 57 4 68 167 172 269 1.23e-12 68.9
Msa1367280 AT5G08590.2 34.951 103 63 3 65 163 81 183 1.26e-12 67.8
Msa1367280 AT5G07320.1 28.966 145 96 3 196 339 23 161 1.43e-12 68.9
Msa1367280 AT2G34180.1 35.514 107 63 4 63 167 212 314 1.54e-12 68.9
Msa1367280 AT5G08590.1 34.951 103 63 3 65 163 157 259 1.66e-12 68.2
Msa1367280 AT4G20780.1 27.215 158 89 3 212 345 30 185 3.07e-12 65.1
Msa1367280 AT3G03000.1 31.081 148 93 4 204 345 13 157 3.16e-12 64.7
Msa1367280 AT1G76640.1 31.034 145 92 3 206 344 17 159 3.27e-12 64.3
Msa1367280 AT5G17470.1 28.148 135 89 3 215 343 6 138 5.70e-12 63.5
Msa1367280 AT1G10940.2 33.654 104 65 3 65 164 165 268 7.29e-12 66.2
Msa1367280 AT1G10940.1 33.654 104 65 3 65 164 157 260 8.08e-12 66.2
Msa1367280 AT4G14640.3 34.951 103 64 2 204 304 6 107 1.17e-11 61.6
Msa1367280 AT5G09890.2 36.283 113 65 4 68 176 305 414 1.54e-11 65.9
Msa1367280 AT5G09890.1 36.283 113 65 4 68 176 305 414 1.58e-11 65.9
Msa1367280 AT5G63650.1 33.981 103 64 3 65 163 157 259 1.95e-11 65.1
Msa1367280 AT1G12310.1 28.472 144 99 3 202 343 4 145 1.95e-11 62.0
Msa1367280 AT1G59580.2 34.028 144 64 5 61 174 187 329 2.01e-11 65.1
Msa1367280 AT1G59580.1 34.028 144 64 5 61 174 187 329 2.01e-11 65.1
Msa1367280 AT4G26470.2 25.140 179 110 3 153 312 5 178 2.42e-11 63.2
Msa1367280 AT1G76650.1 29.577 142 95 2 206 344 38 177 2.86e-11 62.0
Msa1367280 AT1G76650.3 29.577 142 95 2 206 344 38 177 2.86e-11 62.0
Msa1367280 AT4G33950.2 33.654 104 65 3 65 164 174 277 3.29e-11 64.3
Msa1367280 AT1G60940.1 31.731 104 67 2 65 164 157 260 3.33e-11 64.3
Msa1367280 AT1G60940.2 31.731 104 67 2 65 164 157 260 3.33e-11 64.3
Msa1367280 AT4G33950.1 33.654 104 65 3 65 164 174 277 4.47e-11 63.9
Msa1367280 AT3G27580.2 31.731 104 64 3 67 165 416 517 5.32e-11 64.3
Msa1367280 AT3G27580.1 31.731 104 64 3 67 165 416 517 5.32e-11 64.3
Msa1367280 AT1G03920.1 35.644 101 60 3 68 164 336 435 8.18e-11 63.5
Msa1367280 AT1G03920.3 35.644 101 60 3 68 164 336 435 8.18e-11 63.5
Msa1367280 AT1G62820.1 27.778 144 100 3 202 343 4 145 8.65e-11 60.1

Find 117 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACCTTGCTACGAAAAT+TGG 0.123518 tig0018511:-231185 None:intergenic
TTTGTAAGTTTCACCTTATT+TGG 0.139591 tig0018511:+231522 Msa1367280:three_prime_UTR
AATAGATTATCAATACATTA+TGG 0.221338 tig0018511:-231433 None:intergenic
ATACGTCTTGTTTCCAAATA+AGG 0.230554 tig0018511:-231535 None:intergenic
GTAGAAGTGATTCTCTTCTT+TGG 0.233824 tig0018511:-228828 None:intergenic
GGGAATATTTAATGCTATAT+TGG 0.238862 tig0018511:+228719 Msa1367280:CDS
AAGAAGTGTCTTGCATATTC+TGG 0.250425 tig0018511:-231126 None:intergenic
AAAGAAAGGCTCTTGTTAAT+AGG 0.251209 tig0018511:-231502 None:intergenic
GACTAGATCTTTGGCACTTT+CGG 0.279414 tig0018511:-228784 None:intergenic
TATCTAGAATGAAACAATTC+AGG 0.281671 tig0018511:+229258 Msa1367280:CDS
CATCTTCCGGACTAGATCTT+TGG 0.322108 tig0018511:-228793 None:intergenic
TTACTTCCTCATACGGGTTA+AGG 0.329243 tig0018511:-231390 None:intergenic
TTATCAGAAGAAGAGATTAA+AGG 0.339374 tig0018511:+229814 Msa1367280:CDS
GTGATTCTCTTCTTTGGATC+TGG 0.341020 tig0018511:-228822 None:intergenic
CAGTGTTATGCTCTTATTTG+TGG 0.351178 tig0018511:+231332 Msa1367280:three_prime_UTR
ATCGAGAGACTTAACGTTGT+TGG 0.351564 tig0018511:+231087 Msa1367280:three_prime_UTR
CAGGCTGATGTTGATGGAAA+TGG 0.357534 tig0018511:+230064 Msa1367280:intron
GTTCAAGAAACTTGCATTGA+AGG 0.357996 tig0018511:+229292 Msa1367280:CDS
GATCTGGTGTCAGCATCTTC+CGG 0.364087 tig0018511:-228806 None:intergenic
GTTTCTCAGGCTGATGTTGA+TGG 0.365465 tig0018511:+230058 Msa1367280:intron
AGGAAAAGTTTACCGTGATA+TGG 0.368012 tig0018511:+228460 Msa1367280:intron
ATATTGTATATTCTGCTTAG+TGG 0.368948 tig0018511:+228563 Msa1367280:CDS
GGAAAAGGAAGAAAAGAAAA+GGG 0.370659 tig0018511:-231481 None:intergenic
TGCACTATCAATCGGTTTAT+CGG 0.370947 tig0018511:-229231 None:intergenic
TATTGTCCTTATCAAAATAC+TGG 0.372678 tig0018511:-230168 None:intergenic
ATATGCAAGACACTTCTTCA+TGG 0.378069 tig0018511:+231131 Msa1367280:three_prime_UTR
GCATATTACTAGAGAAGAAT+TGG 0.378804 tig0018511:+230785 Msa1367280:CDS
AAGACAGGCTTGGCTCGAAT+TGG 0.380610 tig0018511:+229901 Msa1367280:CDS
ATTCAGTGGATTTAAAATAA+TGG 0.380620 tig0018511:-231026 None:intergenic
TTGGCACTTTCGGATATTGA+TGG 0.388440 tig0018511:-228774 None:intergenic
AGGAATTACATGTTGCTTCC+TGG 0.391233 tig0018511:+228380 Msa1367280:CDS
GAGGTACTTCGTCGTAATTA+TGG 0.392346 tig0018511:+228509 Msa1367280:CDS
CAAGGCAATGTTTGCAAACA+TGG 0.398987 tig0018511:+229840 Msa1367280:CDS
ATAGATTATCAATACATTAT+GGG 0.400306 tig0018511:-231432 None:intergenic
AGGAAAAGGAAGAAAAGAAA+AGG 0.400576 tig0018511:-231482 None:intergenic
ACAACCTTGCTACGAAAATT+GGG 0.403439 tig0018511:-231184 None:intergenic
GGGTGATGAAGCAACGATAA+AGG 0.405663 tig0018511:+230833 Msa1367280:CDS
TTTCTTTGCAGAAACTGAAA+AGG 0.406051 tig0018511:+228698 Msa1367280:intron
TTGATCTTACCAGCCCAAAA+AGG 0.410879 tig0018511:-228593 None:intergenic
GGCTGAAGTGAAACAGCTTA+TGG 0.411627 tig0018511:+229939 Msa1367280:CDS
ATGGATTGGTGAATACTTTG+AGG 0.416185 tig0018511:+231150 Msa1367280:three_prime_UTR
GGCTGAGATTATGTATCTTC+AGG 0.419557 tig0018511:+231558 Msa1367280:three_prime_UTR
TGACTATCTTGAATTCATAT+CGG 0.419719 tig0018511:+230093 Msa1367280:CDS
ACGGGCAGTAAACTCATCTT+TGG 0.421789 tig0018511:-227047 None:intergenic
ATGGAAAGGAAATAGACATT+TGG 0.433084 tig0018511:+228528 Msa1367280:CDS
CGTTAAGTCTCTCGATCAAT+TGG 0.437925 tig0018511:-231080 None:intergenic
GATTATTGTGGTAGTTTCAA+AGG 0.457359 tig0018511:+228360 Msa1367280:intron
AGAAGTGTCTTGCATATTCT+GGG 0.459931 tig0018511:-231125 None:intergenic
TCTACACCGGCGGGACGAGA+AGG 0.465989 tig0018511:-227109 None:intergenic
AGGCTCTTGTTAATAGGAAA+AGG 0.469836 tig0018511:-231496 None:intergenic
CAAGACACTTCTTCATGGAT+TGG 0.470691 tig0018511:+231136 Msa1367280:three_prime_UTR
TATGCTCTTATTTGTGGTAG+AGG 0.471159 tig0018511:+231338 Msa1367280:three_prime_UTR
CTCCACCTTCTCTCATCCAC+GGG 0.480309 tig0018511:-229202 None:intergenic
CTACACCGGCGGGACGAGAA+GGG 0.480585 tig0018511:-227108 None:intergenic
TGATTTCCTTAACCCGTATG+AGG 0.480616 tig0018511:+231384 Msa1367280:three_prime_UTR
AAGGTGAAACTTACAAAGAA+AGG 0.486239 tig0018511:-231516 None:intergenic
CTTTCGGATATTGATGGCCA+TGG 0.487626 tig0018511:-228768 None:intergenic
TTCTTTGCAGAAACTGAAAA+GGG 0.488753 tig0018511:+228699 Msa1367280:intron
TCTCCACCTTCTCTCATCCA+CGG 0.506735 tig0018511:-229203 None:intergenic
TTACATCAATGTTCCACCTC+AGG 0.510312 tig0018511:+227144 Msa1367280:CDS
TAATTACGACGAAGTACCTC+AGG 0.516147 tig0018511:-228506 None:intergenic
GATAGAACTGCACTATCAAT+CGG 0.519441 tig0018511:-229239 None:intergenic
GGATGGGAGAATAAATTATG+AGG 0.522634 tig0018511:+230962 Msa1367280:intron
ATCTAGAATGAAACAATTCA+GGG 0.522998 tig0018511:+229259 Msa1367280:CDS
GAAATAGACATTTGGAGTGC+AGG 0.527784 tig0018511:+228536 Msa1367280:CDS
AAATTCAGGCTCAAGACACT+TGG 0.528956 tig0018511:-231293 None:intergenic
AGAAGAGATTAAAGGTCTCA+AGG 0.531463 tig0018511:+229822 Msa1367280:CDS
ATATTTAATGCTATATTGGA+AGG 0.532580 tig0018511:+228723 Msa1367280:CDS
AAAGTGCCAAAGATCTAGTC+CGG 0.532656 tig0018511:+228787 Msa1367280:CDS
TACACCGGCGGGACGAGAAG+GGG 0.532694 tig0018511:-227107 None:intergenic
GAAAAGGAAGAAAAGAAAAG+GGG 0.533008 tig0018511:-231480 None:intergenic
ATCACTTCTACAGAAGTCCT+TGG 0.539145 tig0018511:+228840 Msa1367280:CDS
AGGCTGATGTTGATGGAAAT+GGG 0.539230 tig0018511:+230065 Msa1367280:intron
GAGAAGTGGAATGCCACACC+AGG 0.542008 tig0018511:+231001 Msa1367280:CDS
ACCCATTCCATGCTTTGTCA+TGG 0.542168 tig0018511:-230814 None:intergenic
TGAAGAACTGAAGACAGGCT+TGG 0.551989 tig0018511:+229891 Msa1367280:CDS
TTATTTGGAAACAAGACGTA+TGG 0.553900 tig0018511:+231537 Msa1367280:three_prime_UTR
GCATAGGCACAGACTTGAGC+GGG 0.554226 tig0018511:+230123 Msa1367280:CDS
TAAAATAATGGTCCCTGGTG+TGG 0.556346 tig0018511:-231014 None:intergenic
TGCCATGACAAAGCATGGAA+TGG 0.558094 tig0018511:+230812 Msa1367280:CDS
GCCATGACAAAGCATGGAAT+GGG 0.560994 tig0018511:+230813 Msa1367280:CDS
AGGTGATGATCTATGATGAC+GGG 0.562566 tig0018511:-227065 None:intergenic
GAGACTGCCATGACAAAGCA+TGG 0.567560 tig0018511:+230807 Msa1367280:CDS
TTCTGTGCAATGATGAGAAG+TGG 0.569079 tig0018511:+230987 Msa1367280:CDS
ACACCGGCGGGACGAGAAGG+GGG 0.572200 tig0018511:-227106 None:intergenic
GGATTTAAAATAATGGTCCC+TGG 0.579689 tig0018511:-231019 None:intergenic
TGCTTACTATGTTGCCCCTG+AGG 0.582552 tig0018511:+228490 Msa1367280:CDS
GGTAGAGGAAAGAATAATCA+CGG 0.583369 tig0018511:+231353 Msa1367280:three_prime_UTR
CACCCGTGGATGAGAGAAGG+TGG 0.586292 tig0018511:+229200 Msa1367280:CDS
AAAGGAAATCATTTCTGAGG+TGG 0.586336 tig0018511:+230851 Msa1367280:CDS
ACTTATGAAGAACTGAAGAC+AGG 0.591721 tig0018511:+229886 Msa1367280:CDS
GATAAAGGAAATCATTTCTG+AGG 0.597584 tig0018511:+230848 Msa1367280:CDS
AATTGGATCAAGACTGTCTG+AGG 0.601026 tig0018511:+229918 Msa1367280:CDS
ACTTCGTCGTAATTATGGAA+AGG 0.604529 tig0018511:+228514 Msa1367280:CDS
TAGATTATCAATACATTATG+GGG 0.607292 tig0018511:-231431 None:intergenic
CAGGTGATGATCTATGATGA+CGG 0.609122 tig0018511:-227066 None:intergenic
TCATATCGGCTACAATGCAT+AGG 0.609185 tig0018511:+230107 Msa1367280:CDS
TAATTACTATCTACACCGGC+GGG 0.612569 tig0018511:-227118 None:intergenic
AAAGTTTACCGTGATATGGT+AGG 0.622747 tig0018511:+228464 Msa1367280:CDS
GAACACCCGTGGATGAGAGA+AGG 0.623419 tig0018511:+229197 Msa1367280:intron
CACACAATAATGGGTTGTCA+CGG 0.625095 tig0018511:+227004 None:intergenic
ATGAAATCGACTCCATTCAG+TGG 0.631210 tig0018511:-231040 None:intergenic
AATGGGTTGTCACGGCAGCA+AGG 0.638772 tig0018511:+227012 None:intergenic
ATAATTACTATCTACACCGG+CGG 0.640233 tig0018511:-227119 None:intergenic
TCGACTTTGTTAGTGAACCA+TGG 0.641429 tig0018511:+228751 Msa1367280:CDS
GTAGAGGAAAGAATAATCAC+GGG 0.643516 tig0018511:+231354 Msa1367280:three_prime_UTR
GAAGACTGTTGAACCTGAGG+TGG 0.650345 tig0018511:-227157 None:intergenic
ACGATAATTACTATCTACAC+CGG 0.650389 tig0018511:-227122 None:intergenic
TGCATAGGCACAGACTTGAG+CGG 0.654593 tig0018511:+230122 Msa1367280:CDS
ACTATCAATCGGTTTATCGG+AGG 0.661244 tig0018511:-229228 None:intergenic
TTGTTTGGCAAGAACACCCG+TGG 0.663475 tig0018511:+229186 Msa1367280:intron
GAGGAAAGAATAATCACGGG+AGG 0.675004 tig0018511:+231357 Msa1367280:three_prime_UTR
AATTACGACGAAGTACCTCA+GGG 0.677091 tig0018511:-228505 None:intergenic
AAGCACTGCCTACCATATCA+CGG 0.680125 tig0018511:-228472 None:intergenic
AACATGGACACTGATAGTAG+TGG 0.718728 tig0018511:+229856 Msa1367280:CDS
AGAAGTGGAATGCCACACCA+GGG 0.724546 tig0018511:+231002 Msa1367280:CDS
ATTACGACGAAGTACCTCAG+GGG 0.803244 tig0018511:-228504 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTAAATAAATAAAAA+TGG - tig0018511:228947-228966 None:intergenic 0.0%
!!! TTTTTTTTTTTTTTATATAT+GGG - tig0018511:230225-230244 None:intergenic 0.0%
!!! TTTTTTTTTTTTTTTATATA+TGG - tig0018511:230226-230245 None:intergenic 0.0%
!!! TGTGATATATTTATAGTTTT+TGG + tig0018511:228630-228649 Msa1367280:intron 15.0%
!!! TTGAAAAATTAACACTTTTA+TGG + tig0018511:228665-228684 Msa1367280:intron 15.0%
!!! ATAAAGTGAAGTTTTTATTA+TGG - tig0018511:230622-230641 None:intergenic 15.0%
!! TGTTAAAATTGTAAGATTTA+TGG + tig0018511:230724-230743 Msa1367280:intron 15.0%
!! ATAGATTATCAATACATTAT+GGG - tig0018511:231435-231454 None:intergenic 15.0%
!! AATAGATTATCAATACATTA+TGG - tig0018511:231436-231455 None:intergenic 15.0%
!! AACTTCTTTATATCTTCATA+GGG - tig0018511:227277-227296 None:intergenic 20.0%
!! AAACTTCTTTATATCTTCAT+AGG - tig0018511:227278-227297 None:intergenic 20.0%
!! AAAAATAAGTAATCCCAAAT+TGG - tig0018511:227330-227349 None:intergenic 20.0%
!!! TTAGTTTGATTGATATCTAA+TGG + tig0018511:227944-227963 Msa1367280:intron 20.0%
!! AAATAGTAAATCAGATAAGT+TGG + tig0018511:228245-228264 Msa1367280:intron 20.0%
!!! AAAAATTAACACTTTTATGG+TGG + tig0018511:228668-228687 Msa1367280:intron 20.0%
!!! AAAATTAACACTTTTATGGT+GGG + tig0018511:228669-228688 Msa1367280:intron 20.0%
!! ATATTTAATGCTATATTGGA+AGG + tig0018511:228723-228742 Msa1367280:CDS 20.0%
!! TAGTATGTATTACAATACTT+GGG - tig0018511:229067-229086 None:intergenic 20.0%
!! ATAGTATGTATTACAATACT+TGG - tig0018511:229068-229087 None:intergenic 20.0%
!!! ACTATGATTAATGATTTGTT+TGG + tig0018511:229171-229190 Msa1367280:intron 20.0%
!!! ATATTGAACTCTAAAGTTTA+TGG + tig0018511:229627-229646 Msa1367280:intron 20.0%
!!! AGAGTTTTCTTGATTAATTT+AGG - tig0018511:230898-230917 None:intergenic 20.0%
!!! ATTCAGTGGATTTAAAATAA+TGG - tig0018511:231029-231048 None:intergenic 20.0%
!!! ATTATTTTAAATCCACTGAA+TGG + tig0018511:231028-231047 Msa1367280:exon 20.0%
!!! TCTTTATACATTTTAGTTTC+AGG + tig0018511:231258-231277 Msa1367280:three_prime_UTR 20.0%
!! AGCATTTAACATAAAAATTC+AGG - tig0018511:231310-231329 None:intergenic 20.0%
!! GAAGTAAAAACTCAAATATA+TGG + tig0018511:231406-231425 Msa1367280:three_prime_UTR 20.0%
!! TAGATTATCAATACATTATG+GGG - tig0018511:231434-231453 None:intergenic 20.0%
!! ATAAAGAAGTTTTACACTCT+AGG + tig0018511:227286-227305 Msa1367280:intron 25.0%
! CGTGTAAATCTATATTAAAG+AGG + tig0018511:227380-227399 Msa1367280:intron 25.0%
! CCTTTAAACTCAACAATATT+CGG - tig0018511:227478-227497 None:intergenic 25.0%
! CACATAATTTAAACATTAGC+AGG - tig0018511:227826-227845 None:intergenic 25.0%
! GGTTATTATATTTGCTTGTT+AGG + tig0018511:227882-227901 Msa1367280:intron 25.0%
! ACGAAAATACAATCTTTGTT+AGG - tig0018511:228213-228232 None:intergenic 25.0%
!! ACAAAGATTGTATTTTCGTT+TGG + tig0018511:228214-228233 Msa1367280:intron 25.0%
!! GTGTTACTGTAATTTATTTC+AGG + tig0018511:228440-228459 Msa1367280:intron 25.0%
! ATATTGTATATTCTGCTTAG+TGG + tig0018511:228563-228582 Msa1367280:CDS 25.0%
!! AAATTAACACTTTTATGGTG+GGG + tig0018511:228670-228689 Msa1367280:intron 25.0%
! GGGAATATTTAATGCTATAT+TGG + tig0018511:228719-228738 Msa1367280:CDS 25.0%
!! TAGTTCTTCTTTTAATCAAG+TGG + tig0018511:228916-228935 Msa1367280:intron 25.0%
!! CATTTGAAACAAAAAGTCAA+AGG - tig0018511:229008-229027 None:intergenic 25.0%
! ACAAATCATTAATCATAGTC+AGG - tig0018511:229170-229189 None:intergenic 25.0%
!! TATCTAGAATGAAACAATTC+AGG + tig0018511:229258-229277 Msa1367280:CDS 25.0%
!! ATCTAGAATGAAACAATTCA+GGG + tig0018511:229259-229278 Msa1367280:CDS 25.0%
! ACCAACACAAATGAATTTAT+TGG - tig0018511:229516-229535 None:intergenic 25.0%
!! GTTTCTTGTAAAGTTTTCTT+TGG + tig0018511:229534-229553 Msa1367280:intron 25.0%
! TTGACATAAAACAGAAAAAC+TGG + tig0018511:229603-229622 Msa1367280:intron 25.0%
! ATTCTATGAGTTTCATATTC+TGG + tig0018511:229725-229744 Msa1367280:intron 25.0%
!! GATATTTTTCTCCATTAACT+TGG + tig0018511:229761-229780 Msa1367280:intron 25.0%
! TTATCAGAAGAAGAGATTAA+AGG + tig0018511:229814-229833 Msa1367280:CDS 25.0%
! TGACTATCTTGAATTCATAT+CGG + tig0018511:230093-230112 Msa1367280:CDS 25.0%
! TATTGTCCTTATCAAAATAC+TGG - tig0018511:230171-230190 None:intergenic 25.0%
!!! TATTTTGATAAGGACAATAG+TGG + tig0018511:230172-230191 Msa1367280:CDS 25.0%
!!! ATTTTGATAAGGACAATAGT+GGG + tig0018511:230173-230192 Msa1367280:CDS 25.0%
! TTTAATCTCTAAGTCAATGT+TGG + tig0018511:230412-230431 Msa1367280:intron 25.0%
! GGGTTAGGAAAAAATAAATA+AGG - tig0018511:230528-230547 None:intergenic 25.0%
!! AAGTGAAGTTTTTATTATGG+TGG - tig0018511:230619-230638 None:intergenic 25.0%
! CTAATGATTCTTAAACAAAC+AGG + tig0018511:230941-230960 Msa1367280:intron 25.0%
! TTTGTAAGTTTCACCTTATT+TGG + tig0018511:231522-231541 Msa1367280:three_prime_UTR 25.0%
ACGATAATTACTATCTACAC+CGG - tig0018511:227125-227144 None:intergenic 30.0%
TTACACTCTAGGTAAAGAAT+TGG + tig0018511:227297-227316 Msa1367280:intron 30.0%
TACACTCTAGGTAAAGAATT+GGG + tig0018511:227298-227317 Msa1367280:intron 30.0%
! TTTTGTACTGAGAATTCAAC+CGG + tig0018511:227346-227365 Msa1367280:intron 30.0%
TTTACACGCGTAATTTAAAC+CGG - tig0018511:227368-227387 None:intergenic 30.0%
CCGAATATTGTTGAGTTTAA+AGG + tig0018511:227475-227494 Msa1367280:intron 30.0%
TTTGATAGGATTATTGCTCA+AGG + tig0018511:227559-227578 Msa1367280:intron 30.0%
!!! TGTGCACATTTGTCATTTTA+TGG + tig0018511:227633-227652 Msa1367280:intron 30.0%
!!! GTGCACATTTGTCATTTTAT+GGG + tig0018511:227634-227653 Msa1367280:intron 30.0%
! GAATTTCTTGCTTTCTAGTA+AGG + tig0018511:227684-227703 Msa1367280:intron 30.0%
CTTTCTGTCTTTATTGAAGA+AGG + tig0018511:227742-227761 Msa1367280:intron 30.0%
CTCTCAAAACTATCTATGTT+TGG + tig0018511:227861-227880 Msa1367280:intron 30.0%
! GAGTTTGAGTTATAACTCAT+TGG + tig0018511:227996-228015 Msa1367280:intron 30.0%
TAAAGATCAAGTTAGACTTG+AGG - tig0018511:228059-228078 None:intergenic 30.0%
AACTTGATCTTTAACATGAG+TGG + tig0018511:228066-228085 Msa1367280:intron 30.0%
TCAATCTTACAACAACAAGT+TGG - tig0018511:228138-228157 None:intergenic 30.0%
! CAAGTATCATATCTTTTCGA+TGG - tig0018511:228186-228205 None:intergenic 30.0%
GTTTCTATTCCATATTCAGT+AGG + tig0018511:228267-228286 Msa1367280:intron 30.0%
CTGATTGTGTTTGATTATTG+TGG + tig0018511:228348-228367 Msa1367280:intron 30.0%
GATTATTGTGGTAGTTTCAA+AGG + tig0018511:228360-228379 Msa1367280:intron 30.0%
ATGGAAAGGAAATAGACATT+TGG + tig0018511:228528-228547 Msa1367280:CDS 30.0%
TTTCTTTGCAGAAACTGAAA+AGG + tig0018511:228698-228717 Msa1367280:intron 30.0%
TTCTTTGCAGAAACTGAAAA+GGG + tig0018511:228699-228718 Msa1367280:intron 30.0%
TTTAGATGCTAAACTGATAC+TGG - tig0018511:228978-228997 None:intergenic 30.0%
TGAAACAAAAAGTCAAAGGA+GGG - tig0018511:229004-229023 None:intergenic 30.0%
TTGAAACAAAAAGTCAAAGG+AGG - tig0018511:229005-229024 None:intergenic 30.0%
GAAAATGCAAATCAATGATG+AGG - tig0018511:229115-229134 None:intergenic 30.0%
! TCTAACTTTTCTATCACACA+TGG + tig0018511:229144-229163 Msa1367280:intron 30.0%
!! TGTTTTGTGTCCTTTTTTGT+CGG + tig0018511:229346-229365 Msa1367280:intron 30.0%
TGTCTGTAGAAATGGTATTA+TGG + tig0018511:229373-229392 Msa1367280:intron 30.0%
GCATTTATACAGCTTAATAG+TGG - tig0018511:229494-229513 None:intergenic 30.0%
GCCAATAAATTCATTTGTGT+TGG + tig0018511:229512-229531 Msa1367280:intron 30.0%
ATGAAACTCATAGAATGTTC+AGG - tig0018511:229721-229740 None:intergenic 30.0%
!!! ATATTCTGGCTTATCTTTTC+TGG + tig0018511:229739-229758 Msa1367280:intron 30.0%
!! ATTTTTCTCCATTAACTTGG+TGG + tig0018511:229764-229783 Msa1367280:intron 30.0%
AGAAATTTCCACCAAGTTAA+TGG - tig0018511:229775-229794 None:intergenic 30.0%
CACAGTTTCTGTTAAGTTTA+GGG - tig0018511:230024-230043 None:intergenic 30.0%
ACACAGTTTCTGTTAAGTTT+AGG - tig0018511:230025-230044 None:intergenic 30.0%
TCTTATGTATAACGTTTCTC+AGG + tig0018511:230045-230064 Msa1367280:intron 30.0%
!!! AGCATTCCAGTATTTTGATA+AGG + tig0018511:230162-230181 Msa1367280:CDS 30.0%
CGTTCAAACACAAAATGATT+TGG - tig0018511:230254-230273 None:intergenic 30.0%
GCATATTACTAGAGAAGAAT+TGG + tig0018511:230785-230804 Msa1367280:CDS 30.0%
GATAAAGGAAATCATTTCTG+AGG + tig0018511:230848-230867 Msa1367280:CDS 30.0%
TGATTCTTAAACAAACAGGA+TGG + tig0018511:230945-230964 Msa1367280:intron 30.0%
GATTCTTAAACAAACAGGAT+GGG + tig0018511:230946-230965 Msa1367280:intron 30.0%
! TGAGTTTTTACTTCCTCATA+CGG - tig0018511:231400-231419 None:intergenic 30.0%
GAAAAGGAAGAAAAGAAAAG+GGG - tig0018511:231483-231502 None:intergenic 30.0%
GGAAAAGGAAGAAAAGAAAA+GGG - tig0018511:231484-231503 None:intergenic 30.0%
AGGAAAAGGAAGAAAAGAAA+AGG - tig0018511:231485-231504 None:intergenic 30.0%
AAAGAAAGGCTCTTGTTAAT+AGG - tig0018511:231505-231524 None:intergenic 30.0%
AAGGTGAAACTTACAAAGAA+AGG - tig0018511:231519-231538 None:intergenic 30.0%
!! ATACGTCTTGTTTCCAAATA+AGG - tig0018511:231538-231557 None:intergenic 30.0%
TTATTTGGAAACAAGACGTA+TGG + tig0018511:231537-231556 Msa1367280:three_prime_UTR 30.0%
ATAATTACTATCTACACCGG+CGG - tig0018511:227122-227141 None:intergenic 35.0%
!! AAGGTTGATACAACCATCTT+AGG + tig0018511:227247-227266 Msa1367280:intron 35.0%
TTCATAGGGTTTACCTAAGA+TGG - tig0018511:227263-227282 None:intergenic 35.0%
!! TGAGTTTAAAGGTGCTTATG+AGG + tig0018511:227486-227505 Msa1367280:intron 35.0%
CTAGAAAGCAAGAAATTCTC+AGG - tig0018511:227682-227701 None:intergenic 35.0%
! TTGCTTTCTAGTAAGGATGA+TGG + tig0018511:227691-227710 Msa1367280:intron 35.0%
! TGCTTTCTAGTAAGGATGAT+GGG + tig0018511:227692-227711 Msa1367280:intron 35.0%
TAACTCATTGGCACATTGTT+AGG + tig0018511:228008-228027 Msa1367280:intron 35.0%
! AGGATAGCATTCTGAAAACT+TGG - tig0018511:228039-228058 None:intergenic 35.0%
GATCTTTAACATGAGTGGAT+AGG + tig0018511:228071-228090 Msa1367280:intron 35.0%
TCAATTCGACCTACTGAATA+TGG - tig0018511:228279-228298 None:intergenic 35.0%
ATTATCGACCATGAAAGCAA+AGG - tig0018511:228411-228430 None:intergenic 35.0%
AGGAAAAGTTTACCGTGATA+TGG + tig0018511:228460-228479 Msa1367280:intron 35.0%
AAAGTTTACCGTGATATGGT+AGG + tig0018511:228464-228483 Msa1367280:CDS 35.0%
ACTTCGTCGTAATTATGGAA+AGG + tig0018511:228514-228533 Msa1367280:CDS 35.0%
GTAGAAGTGATTCTCTTCTT+TGG - tig0018511:228831-228850 None:intergenic 35.0%
!! CTAGACTACTGGTTCTATTA+TGG + tig0018511:228865-228884 Msa1367280:intron 35.0%
! TGCACTATCAATCGGTTTAT+CGG - tig0018511:229234-229253 None:intergenic 35.0%
GATAGAACTGCACTATCAAT+CGG - tig0018511:229242-229261 None:intergenic 35.0%
GTTCAAGAAACTTGCATTGA+AGG + tig0018511:229292-229311 Msa1367280:CDS 35.0%
TCTGAATGTGTTAACCTTCA+GGG - tig0018511:229570-229589 None:intergenic 35.0%
!! TATGGAAACTGCTGTCATTT+TGG + tig0018511:229645-229664 Msa1367280:intron 35.0%
!!! TGTCATTTTGGAAGCTTAGA+TGG + tig0018511:229657-229676 Msa1367280:intron 35.0%
! AACTTGGTGGAAATTTCTCT+AGG + tig0018511:229777-229796 Msa1367280:intron 35.0%
GTGGAAATTTCTCTAGGTTA+TGG + tig0018511:229783-229802 Msa1367280:intron 35.0%
AGAAGAGATTAAAGGTCTCA+AGG + tig0018511:229822-229841 Msa1367280:CDS 35.0%
ACTTATGAAGAACTGAAGAC+AGG + tig0018511:229886-229905 Msa1367280:CDS 35.0%
GCATTCAACTAGTTATGCTT+TGG - tig0018511:229991-230010 None:intergenic 35.0%
AACTCATCTACAATAATGGC+AGG - tig0018511:230337-230356 None:intergenic 35.0%
GACGAACTCATCTACAATAA+TGG - tig0018511:230341-230360 None:intergenic 35.0%
TCAAGTTTAGTCGAATGTGA+TGG - tig0018511:230444-230463 None:intergenic 35.0%
! CTAAACTTGACAGGACATTT+TGG + tig0018511:230454-230473 Msa1367280:intron 35.0%
CAATGTGCATGACATAGATA+AGG - tig0018511:230488-230507 None:intergenic 35.0%
TATGTCATGCACATTGATAC+TGG + tig0018511:230492-230511 Msa1367280:intron 35.0%
CTTTATGAATTCCTAACCTC+TGG + tig0018511:230636-230655 Msa1367280:intron 35.0%
TAAATATTCCTAAGTGCCAG+AGG - tig0018511:230655-230674 None:intergenic 35.0%
CATTTGCTTCTGTAAATTCC+CGG + tig0018511:230758-230777 Msa1367280:intron 35.0%
! AAAGGAAATCATTTCTGAGG+TGG + tig0018511:230851-230870 Msa1367280:CDS 35.0%
GGATGGGAGAATAAATTATG+AGG + tig0018511:230962-230981 Msa1367280:intron 35.0%
! GGATTTAAAATAATGGTCCC+TGG - tig0018511:231022-231041 None:intergenic 35.0%
!! AGAAGTGTCTTGCATATTCT+GGG - tig0018511:231128-231147 None:intergenic 35.0%
!! AAGAAGTGTCTTGCATATTC+TGG - tig0018511:231129-231148 None:intergenic 35.0%
ATATGCAAGACACTTCTTCA+TGG + tig0018511:231131-231150 Msa1367280:three_prime_UTR 35.0%
!! ATGGATTGGTGAATACTTTG+AGG + tig0018511:231150-231169 Msa1367280:three_prime_UTR 35.0%
ACAACCTTGCTACGAAAATT+GGG - tig0018511:231187-231206 None:intergenic 35.0%
AACAACCTTGCTACGAAAAT+TGG - tig0018511:231188-231207 None:intergenic 35.0%
!!! TATTTTTAGTACCACACGCA+CGG - tig0018511:231212-231231 None:intergenic 35.0%
! CAGTGTTATGCTCTTATTTG+TGG + tig0018511:231332-231351 Msa1367280:three_prime_UTR 35.0%
! TATGCTCTTATTTGTGGTAG+AGG + tig0018511:231338-231357 Msa1367280:three_prime_UTR 35.0%
GGTAGAGGAAAGAATAATCA+CGG + tig0018511:231353-231372 Msa1367280:three_prime_UTR 35.0%
GTAGAGGAAAGAATAATCAC+GGG + tig0018511:231354-231373 Msa1367280:three_prime_UTR 35.0%
! GAGTTTTTACTTCCTCATAC+GGG - tig0018511:231399-231418 None:intergenic 35.0%
AGGCTCTTGTTAATAGGAAA+AGG - tig0018511:231499-231518 None:intergenic 35.0%
AGGTGATGATCTATGATGAC+GGG - tig0018511:227068-227087 None:intergenic 40.0%
CAGGTGATGATCTATGATGA+CGG - tig0018511:227069-227088 None:intergenic 40.0%
TAATTACTATCTACACCGGC+GGG - tig0018511:227121-227140 None:intergenic 40.0%
TTACATCAATGTTCCACCTC+AGG + tig0018511:227144-227163 Msa1367280:CDS 40.0%
!!! AGGGTTTTGGATTTGAGGAT+GGG - tig0018511:227195-227214 None:intergenic 40.0%
ATTCTCTGTGCATCTTGTGA+TGG + tig0018511:227513-227532 Msa1367280:intron 40.0%
! AGCTGCTGCTTCTATTTGTA+GGG + tig0018511:227597-227616 Msa1367280:intron 40.0%
! GCTTTCTAGTAAGGATGATG+GGG + tig0018511:227693-227712 Msa1367280:intron 40.0%
!!! GCACTTAAGGCTACTGATTT+TGG + tig0018511:227718-227737 Msa1367280:intron 40.0%
ACTCAATGTCACCATCCTAA+GGG - tig0018511:227980-227999 None:intergenic 40.0%
AACTCAATGTCACCATCCTA+AGG - tig0018511:227981-228000 None:intergenic 40.0%
! AGGAATTACATGTTGCTTCC+TGG + tig0018511:228380-228399 Msa1367280:CDS 40.0%
ATGAAAGCAAAGGAGATACC+AGG - tig0018511:228401-228420 None:intergenic 40.0%
TGGTATCTCCTTTGCTTTCA+TGG + tig0018511:228400-228419 Msa1367280:intron 40.0%
! AATTACGACGAAGTACCTCA+GGG - tig0018511:228508-228527 None:intergenic 40.0%
! TAATTACGACGAAGTACCTC+AGG - tig0018511:228509-228528 None:intergenic 40.0%
! GAGGTACTTCGTCGTAATTA+TGG + tig0018511:228509-228528 Msa1367280:CDS 40.0%
! GAAATAGACATTTGGAGTGC+AGG + tig0018511:228536-228555 Msa1367280:CDS 40.0%
! TTAGTGGTGTACCACCTTTT+TGG + tig0018511:228579-228598 Msa1367280:CDS 40.0%
! TAGTGGTGTACCACCTTTTT+GGG + tig0018511:228580-228599 Msa1367280:CDS 40.0%
TTGATCTTACCAGCCCAAAA+AGG - tig0018511:228596-228615 None:intergenic 40.0%
TCGACTTTGTTAGTGAACCA+TGG + tig0018511:228751-228770 Msa1367280:CDS 40.0%
TTGGCACTTTCGGATATTGA+TGG - tig0018511:228777-228796 None:intergenic 40.0%
GACTAGATCTTTGGCACTTT+CGG - tig0018511:228787-228806 None:intergenic 40.0%
! AAAGTGCCAAAGATCTAGTC+CGG + tig0018511:228787-228806 Msa1367280:CDS 40.0%
GTGATTCTCTTCTTTGGATC+TGG - tig0018511:228825-228844 None:intergenic 40.0%
ATCACTTCTACAGAAGTCCT+TGG + tig0018511:228840-228859 Msa1367280:CDS 40.0%
TACAATACTTGGGATAGCAG+AGG - tig0018511:229057-229076 None:intergenic 40.0%
! ACTATCAATCGGTTTATCGG+AGG - tig0018511:229231-229250 None:intergenic 40.0%
CAGACAATGACCGACAAAAA+AGG - tig0018511:229359-229378 None:intergenic 40.0%
TCGGTCATTGTCTGTAGAAA+TGG + tig0018511:229365-229384 Msa1367280:intron 40.0%
TTGGTAAAAACATGCCCTGA+AGG + tig0018511:229553-229572 Msa1367280:intron 40.0%
GTCTGAATGTGTTAACCTTC+AGG - tig0018511:229571-229590 None:intergenic 40.0%
CAAGGCAATGTTTGCAAACA+TGG + tig0018511:229840-229859 Msa1367280:CDS 40.0%
AACATGGACACTGATAGTAG+TGG + tig0018511:229856-229875 Msa1367280:CDS 40.0%
AATTGGATCAAGACTGTCTG+AGG + tig0018511:229918-229937 Msa1367280:CDS 40.0%
! AGGCTGATGTTGATGGAAAT+GGG + tig0018511:230065-230084 Msa1367280:intron 40.0%
! TCATATCGGCTACAATGCAT+AGG + tig0018511:230107-230126 Msa1367280:CDS 40.0%
CACATTCGACTAAACTTGAC+AGG + tig0018511:230445-230464 Msa1367280:intron 40.0%
! TTTTCCTAACCCCTTCACTA+TGG + tig0018511:230536-230555 Msa1367280:intron 40.0%
TTTCCTAACCCCTTCACTAT+GGG + tig0018511:230537-230556 Msa1367280:intron 40.0%
ATATACTCCCCATAGTGAAG+GGG - tig0018511:230548-230567 None:intergenic 40.0%
CATATACTCCCCATAGTGAA+GGG - tig0018511:230549-230568 None:intergenic 40.0%
TCATATACTCCCCATAGTGA+AGG - tig0018511:230550-230569 None:intergenic 40.0%
CGGGAATTTACAGAAGCAAA+TGG - tig0018511:230760-230779 None:intergenic 40.0%
TCTCTAGTAATATGCCTGTC+CGG - tig0018511:230780-230799 None:intergenic 40.0%
TTCTGTGCAATGATGAGAAG+TGG + tig0018511:230987-231006 Msa1367280:CDS 40.0%
TAAAATAATGGTCCCTGGTG+TGG - tig0018511:231017-231036 None:intergenic 40.0%
! ATGAAATCGACTCCATTCAG+TGG - tig0018511:231043-231062 None:intergenic 40.0%
CGTTAAGTCTCTCGATCAAT+TGG - tig0018511:231083-231102 None:intergenic 40.0%
ATCGAGAGACTTAACGTTGT+TGG + tig0018511:231087-231106 Msa1367280:three_prime_UTR 40.0%
CAAGACACTTCTTCATGGAT+TGG + tig0018511:231136-231155 Msa1367280:three_prime_UTR 40.0%
! CAATCCCAATTTTCGTAGCA+AGG + tig0018511:231180-231199 Msa1367280:three_prime_UTR 40.0%
AAATTCAGGCTCAAGACACT+TGG - tig0018511:231296-231315 None:intergenic 40.0%
TGATTTCCTTAACCCGTATG+AGG + tig0018511:231384-231403 Msa1367280:three_prime_UTR 40.0%
! TTACTTCCTCATACGGGTTA+AGG - tig0018511:231393-231412 None:intergenic 40.0%
GGCTGAGATTATGTATCTTC+AGG + tig0018511:231558-231577 Msa1367280:three_prime_UTR 40.0%
ACGGGCAGTAAACTCATCTT+TGG - tig0018511:227050-227069 None:intergenic 45.0%
GTTGAAGACTGTTGAACCTG+AGG - tig0018511:227163-227182 None:intergenic 45.0%
!!! GGGTTTTGGATTTGAGGATG+GGG - tig0018511:227194-227213 None:intergenic 45.0%
!!! GAGGGTTTTGGATTTGAGGA+TGG - tig0018511:227196-227215 None:intergenic 45.0%
CTAGGTAAAGAATTGGGTCG+AGG + tig0018511:227304-227323 Msa1367280:intron 45.0%
AATTGGGTCGAGGCCAATTT+GGG + tig0018511:227314-227333 Msa1367280:intron 45.0%
GAGGAAGCTTGTGTCTAAAG+CGG + tig0018511:227399-227418 Msa1367280:intron 45.0%
CAGATTCTGCAGCATTTGTC+TGG + tig0018511:227448-227467 Msa1367280:intron 45.0%
! CTTGTGATGGAACTTTGTGC+TGG + tig0018511:227526-227545 Msa1367280:intron 45.0%
! CTGGTGGTGAGTTGTTTGAT+AGG + tig0018511:227545-227564 Msa1367280:intron 45.0%
! GAGCTGCTGCTTCTATTTGT+AGG + tig0018511:227596-227615 Msa1367280:intron 45.0%
AATGGTGAACCTGAACCCTT+AGG + tig0018511:227962-227981 Msa1367280:intron 45.0%
CATTGGCACATTGTTAGGCT+AGG + tig0018511:228013-228032 Msa1367280:intron 45.0%
! AAGCACTGCCTACCATATCA+CGG - tig0018511:228475-228494 None:intergenic 45.0%
! ATTACGACGAAGTACCTCAG+GGG - tig0018511:228507-228526 None:intergenic 45.0%
ATCTTACCAGCCCAAAAAGG+TGG - tig0018511:228593-228612 None:intergenic 45.0%
! CTTTCGGATATTGATGGCCA+TGG - tig0018511:228771-228790 None:intergenic 45.0%
! CATCTTCCGGACTAGATCTT+TGG - tig0018511:228796-228815 None:intergenic 45.0%
AGTCCTTGGTACTAGACTAC+TGG + tig0018511:228854-228873 Msa1367280:intron 45.0%
GAACCAGTAGTCTAGTACCA+AGG - tig0018511:228860-228879 None:intergenic 45.0%
GAGTTGAGTGAAAGCAAACG+AGG - tig0018511:229432-229451 None:intergenic 45.0%
! ACTAGGTGGGTTTAGCTACA+TGG + tig0018511:229460-229479 Msa1367280:intron 45.0%
TGAAGAACTGAAGACAGGCT+TGG + tig0018511:229891-229910 Msa1367280:CDS 45.0%
GGCTGAAGTGAAACAGCTTA+TGG + tig0018511:229939-229958 Msa1367280:CDS 45.0%
GTTTCTCAGGCTGATGTTGA+TGG + tig0018511:230058-230077 Msa1367280:intron 45.0%
! CAGGCTGATGTTGATGGAAA+TGG + tig0018511:230064-230083 Msa1367280:intron 45.0%
!! ACATTGATACTGGCTCACTC+TGG + tig0018511:230502-230521 Msa1367280:intron 45.0%
TTCCTAACCCCTTCACTATG+GGG + tig0018511:230538-230557 Msa1367280:intron 45.0%
ATTCCTAACCTCTGGCACTT+AGG + tig0018511:230644-230663 Msa1367280:intron 45.0%
ATTCCTAAGTGCCAGAGGTT+AGG - tig0018511:230650-230669 None:intergenic 45.0%
CTCTAGTAATATGCCTGTCC+GGG - tig0018511:230779-230798 None:intergenic 45.0%
TGCCATGACAAAGCATGGAA+TGG + tig0018511:230812-230831 Msa1367280:CDS 45.0%
GCCATGACAAAGCATGGAAT+GGG + tig0018511:230813-230832 Msa1367280:CDS 45.0%
ACCCATTCCATGCTTTGTCA+TGG - tig0018511:230817-230836 None:intergenic 45.0%
GGGTGATGAAGCAACGATAA+AGG + tig0018511:230833-230852 Msa1367280:CDS 45.0%
GAGGAAAGAATAATCACGGG+AGG + tig0018511:231357-231376 Msa1367280:three_prime_UTR 45.0%
GAAGACTGTTGAACCTGAGG+TGG - tig0018511:227160-227179 None:intergenic 50.0%
!!! GGCAGAGGGTTTTGGATTTG+AGG - tig0018511:227200-227219 None:intergenic 50.0%
!! CTTCTGCTGCACTGGTTTCT+GGG - tig0018511:227230-227249 None:intergenic 50.0%
GTATCAACCTTCTGCTGCAC+TGG - tig0018511:227238-227257 None:intergenic 50.0%
GAATTGGGTCGAGGCCAATT+TGG + tig0018511:227313-227332 Msa1367280:intron 50.0%
! GTGATGGAACTTTGTGCTGG+TGG + tig0018511:227529-227548 Msa1367280:intron 50.0%
GTGAACCTGAACCCTTAGGA+TGG + tig0018511:227966-227985 Msa1367280:intron 50.0%
TGTCACCATCCTAAGGGTTC+AGG - tig0018511:227974-227993 None:intergenic 50.0%
GGCTCGTGATGATTAGAGTG+TGG - tig0018511:228117-228136 None:intergenic 50.0%
TGCTTACTATGTTGCCCCTG+AGG + tig0018511:228490-228509 Msa1367280:CDS 50.0%
! GATCTGGTGTCAGCATCTTC+CGG - tig0018511:228809-228828 None:intergenic 50.0%
TTGTTTGGCAAGAACACCCG+TGG + tig0018511:229186-229205 Msa1367280:intron 50.0%
TCTCCACCTTCTCTCATCCA+CGG - tig0018511:229206-229225 None:intergenic 50.0%
ACTCAACTCGCCATCTCACT+AGG + tig0018511:229443-229462 Msa1367280:intron 50.0%
AACTCGCCATCTCACTAGGT+GGG + tig0018511:229447-229466 Msa1367280:intron 50.0%
GCTAAACCCACCTAGTGAGA+TGG - tig0018511:229456-229475 None:intergenic 50.0%
! AAGACAGGCTTGGCTCGAAT+TGG + tig0018511:229901-229920 Msa1367280:CDS 50.0%
TGCATAGGCACAGACTTGAG+CGG + tig0018511:230122-230141 Msa1367280:CDS 50.0%
!!! GACAGGACATTTTGGCTCGA+TGG + tig0018511:230462-230481 Msa1367280:intron 50.0%
GCTTCTGTAAATTCCCGGAC+AGG + tig0018511:230763-230782 Msa1367280:intron 50.0%
GAGACTGCCATGACAAAGCA+TGG + tig0018511:230807-230826 Msa1367280:CDS 50.0%
AGAAGTGGAATGCCACACCA+GGG + tig0018511:231002-231021 Msa1367280:CDS 50.0%
!! CCTTCTGCTGCACTGGTTTC+TGG - tig0018511:227231-227250 None:intergenic 55.0%
CCAGAAACCAGTGCAGCAGA+AGG + tig0018511:227228-227247 Msa1367280:intron 55.0%
!! GGATGATGGGGCAGCACTTA+AGG + tig0018511:227705-227724 Msa1367280:intron 55.0%
!! GGTGTACCACCTTTTTGGGC+TGG + tig0018511:228584-228603 Msa1367280:CDS 55.0%
GAACACCCGTGGATGAGAGA+AGG + tig0018511:229197-229216 Msa1367280:intron 55.0%
CTCCACCTTCTCTCATCCAC+GGG - tig0018511:229205-229224 None:intergenic 55.0%
CAACTCGCCATCTCACTAGG+TGG + tig0018511:229446-229465 Msa1367280:intron 55.0%
GCATAGGCACAGACTTGAGC+GGG + tig0018511:230123-230142 Msa1367280:CDS 55.0%
CTCCCCATAGTGAAGGGGTT+AGG - tig0018511:230543-230562 None:intergenic 55.0%
GAGAAGTGGAATGCCACACC+AGG + tig0018511:231001-231020 Msa1367280:CDS 55.0%
! CAAGGTTGTTTCCGTGCGTG+TGG + tig0018511:231198-231217 Msa1367280:three_prime_UTR 55.0%
! GCAGTGGTGGCAGAGGGTTT+TGG - tig0018511:227208-227227 None:intergenic 60.0%
TTCTGGGCAGTGGTGGCAGA+GGG - tig0018511:227214-227233 None:intergenic 60.0%
TTTCTGGGCAGTGGTGGCAG+AGG - tig0018511:227215-227234 None:intergenic 60.0%
!! CACTGGTTTCTGGGCAGTGG+TGG - tig0018511:227221-227240 None:intergenic 60.0%
!! CTGCACTGGTTTCTGGGCAG+TGG - tig0018511:227224-227243 None:intergenic 60.0%
CACCCGTGGATGAGAGAAGG+TGG + tig0018511:229200-229219 Msa1367280:CDS 60.0%
! ACGAGAAGGGGGTGCAGCAG+CGG - tig0018511:227098-227117 None:intergenic 65.0%
TACACCGGCGGGACGAGAAG+GGG - tig0018511:227110-227129 None:intergenic 65.0%
CTACACCGGCGGGACGAGAA+GGG - tig0018511:227111-227130 None:intergenic 65.0%
TCTACACCGGCGGGACGAGA+AGG - tig0018511:227112-227131 None:intergenic 65.0%
! AAGGGGGTGCAGCAGCGGGA+CGG - tig0018511:227093-227112 None:intergenic 70.0%
! CGAGAAGGGGGTGCAGCAGC+GGG - tig0018511:227097-227116 None:intergenic 70.0%
ACACCGGCGGGACGAGAAGG+GGG - tig0018511:227109-227128 None:intergenic 70.0%
! AGGGGGTGCAGCAGCGGGAC+GGG - tig0018511:227092-227111 None:intergenic 75.0%
GCACCCCCTTCTCGTCCCGC+CGG + tig0018511:227103-227122 Msa1367280:CDS 75.0%
! GGTGCAGCAGCGGGACGGGC+AGG - tig0018511:227088-227107 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0018511 gene 227013 231631 227013 ID=Msa1367280;Name=Msa1367280
tig0018511 mRNA 227013 231631 227013 ID=Msa1367280-mRNA-1;Parent=Msa1367280;Name=Msa1367280-mRNA-1;_AED=0.33;_eAED=0.34;_QI=0|0.75|0.77|1|0.87|0.88|9|594|354
tig0018511 exon 227013 227165 227013 ID=Msa1367280-mRNA-1:exon:15442;Parent=Msa1367280-mRNA-1
tig0018511 exon 228374 228401 228374 ID=Msa1367280-mRNA-1:exon:15443;Parent=Msa1367280-mRNA-1
tig0018511 exon 228462 228605 228462 ID=Msa1367280-mRNA-1:exon:15444;Parent=Msa1367280-mRNA-1
tig0018511 exon 228709 228861 228709 ID=Msa1367280-mRNA-1:exon:15445;Parent=Msa1367280-mRNA-1
tig0018511 exon 229198 229313 229198 ID=Msa1367280-mRNA-1:exon:15446;Parent=Msa1367280-mRNA-1
tig0018511 exon 229799 229966 229799 ID=Msa1367280-mRNA-1:exon:15447;Parent=Msa1367280-mRNA-1
tig0018511 exon 230067 230194 230067 ID=Msa1367280-mRNA-1:exon:15448;Parent=Msa1367280-mRNA-1
tig0018511 exon 230785 230884 230785 ID=Msa1367280-mRNA-1:exon:15449;Parent=Msa1367280-mRNA-1
tig0018511 exon 230963 231631 230963 ID=Msa1367280-mRNA-1:exon:15450;Parent=Msa1367280-mRNA-1
tig0018511 CDS 227013 227165 227013 ID=Msa1367280-mRNA-1:cds;Parent=Msa1367280-mRNA-1
tig0018511 CDS 228374 228401 228374 ID=Msa1367280-mRNA-1:cds;Parent=Msa1367280-mRNA-1
tig0018511 CDS 228462 228605 228462 ID=Msa1367280-mRNA-1:cds;Parent=Msa1367280-mRNA-1
tig0018511 CDS 228709 228861 228709 ID=Msa1367280-mRNA-1:cds;Parent=Msa1367280-mRNA-1
tig0018511 CDS 229198 229313 229198 ID=Msa1367280-mRNA-1:cds;Parent=Msa1367280-mRNA-1
tig0018511 CDS 229799 229966 229799 ID=Msa1367280-mRNA-1:cds;Parent=Msa1367280-mRNA-1
tig0018511 CDS 230067 230194 230067 ID=Msa1367280-mRNA-1:cds;Parent=Msa1367280-mRNA-1
tig0018511 CDS 230785 230884 230785 ID=Msa1367280-mRNA-1:cds;Parent=Msa1367280-mRNA-1
tig0018511 CDS 230963 231037 230963 ID=Msa1367280-mRNA-1:cds;Parent=Msa1367280-mRNA-1
tig0018511 three_prime_UTR 231038 231631 231038 ID=Msa1367280-mRNA-1:three_prime_utr;Parent=Msa1367280-mRNA-1
Gene Sequence

>Msa1367280

ATGGGTTGTCACGGCAGCAAGGAGAAGAAACATGCCAAAGATGAGTTTACTGCCCGTCATCATAGATCATCACCTGCCCGTCCCGCTGCTGCACCCCCTTCTCGTCCCGCCGGTGTAGATAGTAATTATCGTTACATCAATGTTCCACCTCAGTTTCAAAGGAATTACATGTTGCTTCCTGGAAAAGTTTACCGTGATATGGTAGGCAGTGCTTACTATGTTGCCCCTGAGGTACTTCGTCGTAATTATGGAAAGGAAATAGACATTTGGAGTGCAGGCATCATATTGTATATTCTGCTTAGTGGTGTACCACCTTTTTGGGCTGAAACTGAAAAGGGAATATTTAATGCTATATTGGAAGGTGAACTCGACTTTGTTAGTGAACCATGGCCATCAATATCCGAAAGTGCCAAAGATCTAGTCCGGAAGATGCTGACACCAGATCCAAAGAAGAGAATCACTTCTACAGAAGTCCTTGAACACCCGTGGATGAGAGAAGGTGGAGAAGCCTCCGATAAACCGATTGATAGTGCAGTTCTATCTAGAATGAAACAATTCAGGGCAATGAACAAGTTCAAGAAACTTGCATTGAAGGTTATGGCTGAAAATTTATCAGAAGAAGAGATTAAAGGTCTCAAGGCAATGTTTGCAAACATGGACACTGATAGTAGTGGCACGATCACTTATGAAGAACTGAAGACAGGCTTGGCTCGAATTGGATCAAGACTGTCTGAGGCTGAAGTGAAACAGCTTATGGAAGCTGCTGATGTTGATGGAAATGGGTCGATTGACTATCTTGAATTCATATCGGCTACAATGCATAGGCACAGACTTGAGCGGGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGACAATAGTGGGCATATTACTAGAGAAGAATTGGAGACTGCCATGACAAAGCATGGAATGGGTGATGAAGCAACGATAAAGGAAATCATTTCTGAGGTGGATACAGATAATGATGGGAGAATAAATTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATGCCACACCAGGGACCATTATTTTAA
Protein sequence

>Msa1367280

MGCHGSKEKKHAKDEFTARHHRSSPARPAAAPPSRPAGVDSNYRYINVPPQFQRNYMLLPGKVYRDMVGSAYYVAPEVLRRNYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGELDFVSEPWPSISESAKDLVRKMLTPDPKKRITSTEVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKFKKLALKVMAENLSEEEIKGLKAMFANMDTDSSGTITYEELKTGLARIGSRLSEAEVKQLMEAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDNSGHITREELETAMTKHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGMPHQGPLF*