AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1367820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367820 MtrunA17_Chr3g0145181 85.340 191 28 0 1 191 89 279 1.15e-121 355
Msa1367820 MtrunA17_Chr3g0145181 94.012 167 10 0 194 360 1 167 1.84e-111 329
Msa1367820 MtrunA17_Chr3g0145201 85.340 191 28 0 1 191 724 914 3.23e-114 355
Msa1367820 MtrunA17_Chr3g0145201 93.548 124 8 0 237 360 679 802 1.97e-74 248
Msa1367820 MtrunA17_Chr8g0370711 71.354 192 52 2 1 191 90 279 7.18e-95 287
Msa1367820 MtrunA17_Chr8g0370711 66.082 171 50 5 194 360 1 167 2.13e-64 208
Msa1367820 MtrunA17_Chr8g0370721 70.833 192 53 2 1 191 90 279 3.76e-93 282
Msa1367820 MtrunA17_Chr8g0370721 68.421 171 46 5 194 360 1 167 2.33e-66 213
Msa1367820 MtrunA17_Chr3g0145171 69.792 192 55 2 1 191 90 279 1.31e-92 281
Msa1367820 MtrunA17_Chr3g0145171 64.242 165 53 4 198 360 7 167 1.44e-58 193
Msa1367820 MtrunA17_Chr4g0064781 50.521 192 92 2 1 191 84 273 1.33e-61 201
Msa1367820 MtrunA17_Chr4g0064781 44.242 165 80 5 196 359 7 160 2.03e-31 121
Msa1367820 MtrunA17_Chr8g0365241 36.000 200 124 3 4 202 97 293 4.12e-38 140
Msa1367820 MtrunA17_Chr8g0365241 33.540 161 91 5 205 360 22 171 4.67e-15 75.5
Msa1367820 MtrunA17_Chr5g0420981 34.500 200 127 3 4 202 93 289 1.49e-37 138
Msa1367820 MtrunA17_Chr5g0420981 32.716 162 92 5 205 360 17 167 6.48e-15 75.1
Msa1367820 MtrunA17_Chr5g0424201 35.638 188 118 3 6 191 83 269 4.25e-37 136
Msa1367820 MtrunA17_Chr5g0424201 24.571 175 113 4 187 360 1 157 2.15e-11 64.3
Msa1367820 MtrunA17_Chr7g0232161 36.364 198 122 3 6 202 101 295 1.02e-36 135
Msa1367820 MtrunA17_Chr7g0232161 32.278 158 97 5 205 360 24 173 2.39e-17 82.0
Msa1367820 MtrunA17_Chr7g0239111 37.688 199 118 4 5 201 95 289 1.33e-36 135
Msa1367820 MtrunA17_Chr7g0239111 34.591 159 92 6 205 360 19 168 3.73e-17 82.0
Msa1367820 MtrunA17_Chr7g0239071 36.683 199 122 3 5 202 40 235 8.04e-36 132
Msa1367820 MtrunA17_Chr8g0375681 37.688 199 120 3 5 202 24 219 2.54e-35 130
Msa1367820 MtrunA17_Chr2g0314401 36.275 204 126 3 1 203 89 289 3.24e-35 132
Msa1367820 MtrunA17_Chr2g0314401 35.294 153 88 5 205 354 16 160 1.72e-14 73.9
Msa1367820 MtrunA17_Chr5g0421011 37.129 202 122 4 2 202 85 282 4.28e-35 131
Msa1367820 MtrunA17_Chr5g0421011 34.161 161 89 5 205 360 12 160 1.59e-15 77.0
Msa1367820 MtrunA17_Chr2g0296371 38.000 200 119 4 5 202 94 290 5.45e-35 131
Msa1367820 MtrunA17_Chr2g0296371 36.066 122 75 2 235 355 43 162 3.83e-16 79.0
Msa1367820 MtrunA17_Chr7g0239101 35.644 202 122 4 5 203 95 291 1.92e-34 130
Msa1367820 MtrunA17_Chr7g0239101 34.167 120 72 3 242 360 55 168 1.55e-13 71.2
Msa1367820 MtrunA17_Chr5g0423221 33.005 203 133 2 1 202 107 307 6.52e-34 129
Msa1367820 MtrunA17_Chr5g0423221 33.333 120 73 3 242 360 71 184 3.05e-11 64.3
Msa1367820 MtrunA17_Chr7g0242551 36.634 202 119 4 5 201 98 295 6.99e-34 128
Msa1367820 MtrunA17_Chr7g0242551 32.800 125 77 3 239 360 51 171 3.37e-14 73.2
Msa1367820 MtrunA17_Chr7g0239121 31.925 213 132 5 5 215 91 292 9.59e-34 128
Msa1367820 MtrunA17_Chr7g0239121 31.013 158 99 5 205 360 15 164 3.00e-14 73.2
Msa1367820 MtrunA17_Chr5g0423191 34.000 200 128 3 4 202 86 282 1.33e-33 127
Msa1367820 MtrunA17_Chr5g0423191 31.875 160 92 5 206 360 13 160 5.19e-12 66.6
Msa1367820 MtrunA17_Chr8g0375671 33.498 203 131 3 1 202 92 291 1.60e-33 127
Msa1367820 MtrunA17_Chr8g0375671 33.333 168 103 4 196 360 8 169 2.46e-15 76.6
Msa1367820 MtrunA17_Chr2g0314381 34.314 204 130 3 1 203 115 315 3.08e-33 127
Msa1367820 MtrunA17_Chr2g0314381 31.844 179 110 6 188 360 20 192 3.75e-14 73.2
Msa1367820 MtrunA17_Chr3g0114871 35.638 188 116 4 5 189 80 265 3.40e-33 124
Msa1367820 MtrunA17_Chr3g0114871 28.226 124 82 2 238 360 38 155 5.78e-13 68.6
Msa1367820 MtrunA17_Chr7g0239821 33.663 202 126 4 5 203 104 300 5.32e-33 126
Msa1367820 MtrunA17_Chr7g0239821 36.522 115 66 3 241 354 63 171 5.35e-13 69.7
Msa1367820 MtrunA17_Chr8g0375701 35.122 205 122 4 1 201 91 288 6.71e-33 125
Msa1367820 MtrunA17_Chr8g0375701 35.922 103 64 1 258 360 67 167 1.22e-11 65.5
Msa1367820 MtrunA17_Chr5g0423251 33.500 200 129 3 4 202 86 282 7.15e-33 125
Msa1367820 MtrunA17_Chr5g0423251 32.298 161 92 5 205 360 12 160 9.79e-13 68.6
Msa1367820 MtrunA17_Chr2g0314391 35.294 204 128 3 1 203 108 308 8.14e-33 126
Msa1367820 MtrunA17_Chr2g0314391 34.641 153 89 5 205 354 35 179 5.00e-13 69.7
Msa1367820 MtrunA17_Chr5g0398291 32.673 202 132 3 5 203 91 291 2.63e-32 124
Msa1367820 MtrunA17_Chr5g0398291 26.582 158 112 2 206 359 8 165 3.11e-13 70.1
Msa1367820 MtrunA17_Chr5g0421101 36.316 190 117 3 14 202 96 282 3.94e-32 124
Msa1367820 MtrunA17_Chr5g0421101 31.847 157 98 4 205 360 12 160 8.30e-13 68.9
Msa1367820 MtrunA17_Chr4g0006371 35.644 202 121 4 5 201 106 303 5.72e-32 123
Msa1367820 MtrunA17_Chr4g0006371 32.812 128 79 3 236 360 56 179 8.23e-14 72.0
Msa1367820 MtrunA17_Chr8g0375601 34.171 199 127 3 5 202 91 286 5.98e-32 123
Msa1367820 MtrunA17_Chr8g0375601 32.919 161 101 5 194 352 1 156 1.05e-13 71.6
Msa1367820 MtrunA17_Chr5g0423201 35.602 191 120 3 14 203 96 284 7.09e-32 123
Msa1367820 MtrunA17_Chr5g0423201 31.646 158 98 5 205 360 12 161 5.81e-12 66.2
Msa1367820 MtrunA17_Chr5g0424211 35.263 190 118 4 6 191 81 269 1.10e-31 122
Msa1367820 MtrunA17_Chr5g0420951 34.328 201 125 4 6 202 92 289 3.33e-31 121
Msa1367820 MtrunA17_Chr3g0128001 33.816 207 135 2 6 212 77 281 1.02e-30 119
Msa1367820 MtrunA17_Chr5g0420901 34.000 200 128 3 4 202 85 281 1.24e-30 119
Msa1367820 MtrunA17_Chr1g0162191 35.938 192 117 4 5 194 89 276 1.63e-30 119
Msa1367820 MtrunA17_Chr1g0162191 35.000 160 91 5 203 360 14 162 9.13e-13 68.9
Msa1367820 MtrunA17_Chr5g0437181 33.202 253 149 7 5 242 93 340 2.54e-30 119
Msa1367820 MtrunA17_Chr5g0437181 33.621 116 70 3 241 353 48 159 3.45e-11 63.9
Msa1367820 MtrunA17_Chr3g0113641 35.176 199 125 3 5 201 94 290 4.84e-30 118
Msa1367820 MtrunA17_Chr3g0113641 32.000 150 96 4 206 353 15 160 1.11e-14 74.7
Msa1367820 MtrunA17_Chr5g0420941 32.524 206 134 4 5 208 85 287 5.49e-30 117
Msa1367820 MtrunA17_Chr5g0421091 32.161 199 132 2 5 202 85 281 1.33e-29 117
Msa1367820 MtrunA17_Chr4g0064771 35.079 191 71 2 1 191 1 138 3.15e-29 112
Msa1367820 MtrunA17_Chr2g0314371 34.579 214 102 6 5 189 94 298 1.47e-28 113
Msa1367820 MtrunA17_Chr2g0314371 34.211 152 92 5 205 354 16 161 8.53e-13 68.6
Msa1367820 MtrunA17_Chr3g0114861 34.211 190 120 4 5 191 77 264 2.55e-28 112
Msa1367820 MtrunA17_Chr3g0114861 24.051 158 110 3 204 360 4 152 6.89e-13 68.9
Msa1367820 MtrunA17_Chr8g0345831 34.848 198 126 3 6 203 84 278 3.46e-28 112
Msa1367820 MtrunA17_Chr8g0375571 30.732 205 134 5 1 202 85 284 1.32e-27 111
Msa1367820 MtrunA17_Chr8g0375571 29.299 157 106 3 205 360 10 162 3.45e-12 67.0
Msa1367820 MtrunA17_Chr5g0420721 32.609 184 120 3 20 202 4 184 1.72e-27 108
Msa1367820 MtrunA17_Chr3g0087031 34.375 192 118 4 14 202 109 295 1.96e-27 110
Msa1367820 MtrunA17_Chr3g0087031 37.580 157 91 4 205 360 23 173 6.21e-23 98.6
Msa1367820 MtrunA17_Chr5g0421041 31.156 199 133 3 5 202 85 280 2.23e-27 110
Msa1367820 MtrunA17_Chr5g0421041 31.210 157 97 4 205 360 12 158 9.34e-14 71.6
Msa1367820 MtrunA17_Chr3g0109041 35.025 197 114 6 5 191 83 275 1.57e-26 108
Msa1367820 MtrunA17_Chr5g0412671 35.294 187 116 4 8 191 84 268 2.43e-26 107
Msa1367820 MtrunA17_Chr6g0455481 31.156 199 132 4 5 201 80 275 2.57e-26 107
Msa1367820 MtrunA17_Chr5g0412651 33.862 189 116 5 8 191 84 268 1.35e-25 105
Msa1367820 MtrunA17_Chr3g0102041 33.161 193 116 5 5 191 82 267 1.62e-25 105
Msa1367820 MtrunA17_Chr5g0423211 29.703 202 135 4 5 202 87 285 3.43e-25 104
Msa1367820 MtrunA17_Chr8g0371931 34.896 192 118 5 3 191 80 267 6.69e-25 103
Msa1367820 MtrunA17_Chr2g0289341 31.088 193 115 6 5 191 45 225 1.33e-24 102
Msa1367820 MtrunA17_Chr3g0125201 30.570 193 118 4 5 191 44 226 2.43e-23 98.6
Msa1367820 MtrunA17_Chr8g0371921 32.804 189 122 4 5 191 82 267 3.13e-23 99.4
Msa1367820 MtrunA17_Chr7g0265221 34.359 195 109 8 11 191 114 303 6.45e-23 99.0
Msa1367820 MtrunA17_Chr7g0239091 33.838 198 119 4 5 202 200 385 1.31e-22 98.6
Msa1367820 MtrunA17_Chr7g0239091 31.677 161 95 5 199 358 118 264 4.99e-13 70.1
Msa1367820 MtrunA17_Chr3g0121141 31.551 187 121 5 19 201 52 235 1.38e-22 96.7
Msa1367820 MtrunA17_Chr7g0235981 34.225 187 108 6 39 217 98 277 2.14e-22 96.7
Msa1367820 MtrunA17_Chr5g0405411 30.688 189 126 4 5 191 82 267 2.20e-22 97.1
Msa1367820 MtrunA17_Chr5g0426891 31.183 186 121 3 7 191 85 264 6.84e-22 95.1
Msa1367820 MtrunA17_Chr8g0354261 38.168 131 78 3 72 201 175 303 9.01e-22 95.5
Msa1367820 MtrunA17_Chr1g0179801 31.390 223 136 5 6 213 108 328 9.64e-22 95.5
Msa1367820 MtrunA17_Chr5g0420881 50.000 78 39 0 125 202 1 78 1.07e-21 90.1
Msa1367820 MtrunA17_Chr5g0439011 31.016 187 122 5 19 201 53 236 1.85e-21 93.6
Msa1367820 MtrunA17_Chr1g0187831 31.088 193 127 4 6 198 114 300 2.63e-21 94.4
Msa1367820 MtrunA17_Chr1g0184161 29.293 198 135 4 6 202 80 273 4.20e-21 93.2
Msa1367820 MtrunA17_Chr5g0412681 31.771 192 116 6 8 191 71 255 4.42e-21 92.8
Msa1367820 MtrunA17_Chr2g0311711 36.875 160 90 6 44 201 150 300 6.25e-21 92.8
Msa1367820 MtrunA17_Chr1g0184151 29.268 205 127 6 6 201 77 272 1.24e-20 91.7
Msa1367820 MtrunA17_Chr4g0050031 32.973 185 116 4 16 198 117 295 1.35e-20 92.0
Msa1367820 MtrunA17_Chr2g0311921 33.758 157 97 3 51 206 143 293 1.42e-20 91.7
Msa1367820 MtrunA17_Chr6g0472861 30.876 217 132 6 5 218 110 311 3.24e-20 90.9
Msa1367820 MtrunA17_Chr2g0311761 38.211 123 75 1 79 201 181 302 4.67e-20 90.5
Msa1367820 MtrunA17_Chr8g0375581 49.206 63 32 0 123 185 23 85 5.86e-20 83.6
Msa1367820 MtrunA17_Chr4g0045411 31.731 208 120 8 7 201 80 278 5.94e-20 89.7
Msa1367820 MtrunA17_Chr8g0354241 36.585 123 76 2 79 201 183 303 6.56e-20 90.1
Msa1367820 MtrunA17_Chr2g0319491 30.625 160 103 4 39 198 110 261 6.98e-20 89.4
Msa1367820 MtrunA17_Chr7g0235951 31.098 164 105 4 39 201 144 300 7.25e-20 89.7
Msa1367820 MtrunA17_Chr4g0045441 32.536 209 121 8 8 201 76 279 1.14e-19 89.0
Msa1367820 MtrunA17_Chr2g0311701 35.714 154 93 4 48 201 155 302 1.41e-19 89.4
Msa1367820 MtrunA17_Chr2g0332191 29.851 201 130 6 5 198 87 283 1.57e-19 89.0
Msa1367820 MtrunA17_Chr1g0162361 33.493 209 119 7 8 201 68 271 2.12e-19 88.2
Msa1367820 MtrunA17_Chr7g0220001 27.136 199 139 4 5 201 79 273 2.89e-19 87.8
Msa1367820 MtrunA17_Chr8g0336781 31.472 197 128 5 6 201 140 330 4.21e-19 87.8
Msa1367820 MtrunA17_Chr2g0311681 34.184 196 106 8 20 211 122 298 5.05e-19 87.4
Msa1367820 MtrunA17_Chr3g0126741 28.643 199 114 6 5 191 103 285 8.08e-19 86.7
Msa1367820 MtrunA17_Chr7g0225881 29.108 213 133 6 5 215 107 303 1.11e-18 86.3
Msa1367820 MtrunA17_Chr8g0336751 31.818 198 125 6 6 201 138 327 1.26e-18 86.7
Msa1367820 MtrunA17_Chr1g0162351 30.455 220 133 7 8 212 121 335 1.53e-18 86.3
Msa1367820 MtrunA17_Chr1g0162321 30.455 220 133 7 8 212 121 335 1.57e-18 86.3
Msa1367820 MtrunA17_Chr2g0311861 34.211 152 92 4 51 201 133 277 1.64e-18 85.5
Msa1367820 MtrunA17_Chr2g0311691 34.409 186 107 7 20 201 122 296 1.93e-18 85.9
Msa1367820 MtrunA17_Chr6g0488511 28.846 208 125 6 51 237 83 288 2.37e-18 84.7
Msa1367820 MtrunA17_Chr1g0184101 33.113 151 97 3 52 202 127 273 3.08e-18 84.7
Msa1367820 MtrunA17_Chr1g0184241 29.630 216 143 6 6 219 111 319 3.62e-18 84.7
Msa1367820 MtrunA17_Chr2g0311831 37.398 123 75 2 79 201 181 301 4.15e-18 84.7
Msa1367820 MtrunA17_Chr4g0055591 32.680 153 95 5 50 201 144 289 4.71e-18 84.3
Msa1367820 MtrunA17_Chr2g0311631 29.442 197 121 8 5 191 96 284 5.41e-18 84.3
Msa1367820 MtrunA17_Chr8g0364171 36.937 111 68 2 79 189 18 126 5.58e-18 79.7
Msa1367820 MtrunA17_Chr2g0311741 31.579 152 98 4 50 201 115 260 5.94e-18 84.0
Msa1367820 MtrunA17_Chr4g0045471 30.455 220 126 9 8 208 76 287 6.60e-18 84.0
Msa1367820 MtrunA17_Chr2g0319521 35.294 119 75 2 71 189 8 124 6.68e-18 79.3
Msa1367820 MtrunA17_Chr8g0336851 31.016 187 121 6 6 191 105 284 1.42e-17 83.2
Msa1367820 MtrunA17_Chr8g0375661 33.125 160 98 4 205 361 17 170 1.68e-17 79.3
Msa1367820 MtrunA17_Chr8g0336761 29.851 201 125 6 6 201 105 294 2.62e-17 82.4
Msa1367820 MtrunA17_Chr6g0474391 30.108 186 114 6 16 191 119 298 2.63e-17 82.4
Msa1367820 MtrunA17_Chr7g0233661 39.583 96 51 2 106 201 8 96 2.65e-17 78.6
Msa1367820 MtrunA17_Chr1g0187821 31.288 163 106 4 36 198 141 297 2.83e-17 82.4
Msa1367820 MtrunA17_Chr5g0394071 34.646 127 71 4 80 201 3 122 2.91e-17 79.0
Msa1367820 MtrunA17_Chr8g0375641 33.136 169 104 4 196 361 8 170 4.31e-17 78.6
Msa1367820 MtrunA17_Chr4g0011311 33.099 142 89 3 48 189 153 288 4.94e-17 80.9
Msa1367820 MtrunA17_Chr4g0045431 31.068 206 128 7 8 201 76 279 6.67e-17 80.9
Msa1367820 MtrunA17_Chr8g0362741 33.099 142 88 3 48 189 139 273 6.92e-17 80.1
Msa1367820 MtrunA17_Chr8g0364471 27.461 193 134 4 6 198 111 297 9.26e-17 80.9
Msa1367820 MtrunA17_Chr7g0250511 30.159 189 127 4 11 198 97 281 9.91e-17 80.5
Msa1367820 MtrunA17_Chr1g0184121 29.208 202 136 5 4 201 74 272 1.03e-16 80.5
Msa1367820 MtrunA17_Chr4g0075471 42.667 75 43 0 124 198 28 102 1.40e-16 76.6
Msa1367820 MtrunA17_Chr8g0336861 29.412 187 125 5 6 191 105 285 1.50e-16 80.1
Msa1367820 MtrunA17_Chr8g0336631 34.959 123 78 2 79 201 175 295 2.43e-16 79.3
Msa1367820 MtrunA17_Chr1g0184111 31.126 151 101 3 52 202 126 273 3.04e-16 79.0
Msa1367820 MtrunA17_Chr3g0093761 32.500 200 123 7 6 201 95 286 3.17e-16 79.0
Msa1367820 MtrunA17_Chr1g0148771 29.319 191 125 7 5 191 98 282 5.41e-16 78.6
Msa1367820 MtrunA17_Chr8g0351101 30.732 205 109 6 5 191 98 287 7.13e-16 78.2
Msa1367820 MtrunA17_Chr1g0167961 33.333 156 91 6 41 191 145 292 7.61e-16 78.2
Msa1367820 MtrunA17_Chr7g0220011 28.947 152 101 3 52 201 125 271 7.93e-16 77.8
Msa1367820 MtrunA17_Chr1g0187811 32.215 149 95 4 50 198 276 418 1.01e-15 78.2
Msa1367820 MtrunA17_Chr1g0161041 30.151 199 129 5 5 201 136 326 1.05e-15 77.8
Msa1367820 MtrunA17_Chr3g0130391 31.351 185 111 8 17 191 122 300 1.50e-15 77.4
Msa1367820 MtrunA17_Chr3g0093741 30.808 198 130 5 6 201 95 287 1.59e-15 77.0
Msa1367820 MtrunA17_Chr1g0167911 28.000 200 129 5 6 201 98 286 1.82e-15 77.0
Msa1367820 MtrunA17_Chr3g0093751 31.313 198 129 5 6 201 95 287 3.17e-15 76.3
Msa1367820 MtrunA17_Chr4g0045451 30.144 209 126 8 8 201 76 279 3.28e-15 75.9
Msa1367820 MtrunA17_Chr2g0285931 24.481 241 157 7 5 233 63 290 3.43e-15 75.9
Msa1367820 MtrunA17_Chr8g0348081 34.959 123 78 2 79 201 174 294 3.52e-15 75.9
Msa1367820 MtrunA17_Chr4g0066121 34.146 123 79 2 79 201 175 295 4.88e-15 75.5
Msa1367820 MtrunA17_Chr8g0384481 36.283 113 69 3 83 194 183 293 6.39e-15 75.5
Msa1367820 MtrunA17_Chr2g0311611 50.000 72 28 3 125 189 1 71 6.54e-15 68.9
Msa1367820 MtrunA17_Chr1g0167931 35.965 114 69 3 79 191 128 238 1.34e-14 73.9
Msa1367820 MtrunA17_Chr7g0265351 32.000 200 125 8 6 201 78 270 1.43e-14 73.9
Msa1367820 MtrunA17_Chr8g0384461 35.455 110 68 3 83 191 172 279 2.53e-14 73.6
Msa1367820 MtrunA17_Chr4g0037611 40.698 86 49 2 117 201 28 112 3.29e-14 70.5
Msa1367820 MtrunA17_Chr1g0204181 30.319 188 111 8 16 191 114 293 3.79e-14 73.2
Msa1367820 MtrunA17_Chr3g0126761 45.455 77 41 1 122 198 88 163 5.60e-14 70.9
Msa1367820 MtrunA17_Chr1g0170631 44.048 84 43 2 117 198 40 121 6.39e-14 70.1
Msa1367820 MtrunA17_Chr1g0161111 31.461 178 116 4 14 191 181 352 7.12e-14 72.4
Msa1367820 MtrunA17_Chr8g0358941 28.947 228 134 9 16 229 73 286 7.85e-14 71.6
Msa1367820 MtrunA17_Chr8g0336801 39.024 82 49 1 120 201 6 86 1.00e-13 68.2
Msa1367820 MtrunA17_Chr4g0045461 29.439 214 122 6 8 202 76 279 1.00e-13 71.6
Msa1367820 MtrunA17_Chr3g0125421 45.570 79 42 1 113 191 193 270 2.56e-13 70.5
Msa1367820 MtrunA17_Chr2g0313111 26.991 226 141 10 16 233 74 283 3.50e-13 69.7
Msa1367820 MtrunA17_Chr1g0161081 30.168 179 117 6 14 191 122 293 4.84e-13 69.7
Msa1367820 MtrunA17_Chr4g0053251 26.214 206 128 6 5 194 59 256 7.62e-13 68.6
Msa1367820 MtrunA17_Chr7g0236011 31.707 164 98 4 39 198 144 297 8.04e-13 68.9
Msa1367820 MtrunA17_Chr7g0247991 31.902 163 105 4 36 198 141 297 3.13e-12 67.4
Msa1367820 MtrunA17_Chr1g0191201 34.746 118 72 3 77 191 172 287 7.26e-12 66.2
Msa1367820 MtrunA17_Chr8g0375591 35.043 117 73 2 205 321 10 123 1.08e-11 62.0
Msa1367820 MtrunA17_Chr7g0219991 35.644 101 63 1 84 184 253 351 1.11e-11 65.5
Msa1367820 MtrunA17_Chr3g0105281 27.273 220 136 7 5 211 68 276 1.45e-11 65.1
Msa1367820 MtrunA17_Chr7g0266651 28.141 199 131 7 6 201 102 291 4.49e-11 63.5
Msa1367820 MtrunA17_Chr4g0052251 25.000 228 148 8 16 233 75 289 9.76e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367820 AT1G49390.2 51.042 192 91 2 1 191 5 194 1.33e-63 204
Msa1367820 AT1G49390.2 52.564 78 34 2 278 354 1 76 1.51e-20 90.5
Msa1367820 AT1G49390.1 51.042 192 91 2 1 191 84 273 6.38e-63 205
Msa1367820 AT1G49390.1 41.104 163 82 6 198 354 1 155 1.42e-29 117
Msa1367820 AT5G20400.1 49.479 192 94 2 1 191 84 273 7.86e-59 194
Msa1367820 AT5G20400.1 41.667 168 86 6 198 360 1 161 3.37e-30 119
Msa1367820 AT5G54000.1 48.438 192 96 2 1 191 5 194 1.67e-57 188
Msa1367820 AT5G54000.1 48.810 84 40 2 278 360 1 82 2.48e-18 84.3
Msa1367820 AT5G54000.2 48.438 192 96 2 1 191 85 274 1.04e-56 189
Msa1367820 AT5G54000.2 39.412 170 88 6 198 360 1 162 1.14e-27 112
Msa1367820 AT5G20550.1 48.187 193 96 3 1 191 84 274 1.61e-55 186
Msa1367820 AT5G20550.1 40.237 169 87 6 198 360 1 161 6.13e-28 112
Msa1367820 AT4G25310.1 36.634 202 117 4 6 202 92 287 6.91e-37 137
Msa1367820 AT4G25310.1 39.604 101 55 3 261 360 69 164 2.09e-11 65.1
Msa1367820 AT3G21420.1 40.625 192 109 4 13 202 107 295 5.12e-36 134
Msa1367820 AT3G21420.1 37.975 158 91 4 206 359 17 171 8.79e-19 87.0
Msa1367820 AT2G38240.1 36.275 204 125 3 1 201 83 284 6.78e-36 134
Msa1367820 AT2G38240.1 31.847 157 99 3 205 360 11 160 6.81e-16 78.6
Msa1367820 AT1G17020.1 35.294 204 128 3 1 202 91 292 4.68e-35 132
Msa1367820 AT1G17020.1 37.705 122 71 3 240 360 51 168 3.22e-14 73.6
Msa1367820 AT5G08640.2 37.097 186 112 4 5 187 81 264 9.52e-35 130
Msa1367820 AT5G08640.2 27.966 118 81 2 244 360 42 156 6.67e-12 66.2
Msa1367820 AT5G08640.1 37.097 186 112 4 5 187 81 264 9.52e-35 130
Msa1367820 AT5G08640.1 27.966 118 81 2 244 360 42 156 6.67e-12 66.2
Msa1367820 AT4G25300.1 35.266 207 123 4 1 202 90 290 1.09e-33 128
Msa1367820 AT4G25300.1 37.190 121 71 3 241 360 51 167 9.74e-14 72.0
Msa1367820 AT1G17010.1 33.659 205 133 2 5 208 96 298 3.89e-32 124
Msa1367820 AT1G17010.1 35.185 162 91 7 205 360 16 169 3.28e-14 73.6
Msa1367820 AT4G22880.1 30.693 202 136 3 5 203 91 291 4.83e-32 124
Msa1367820 AT4G22880.1 28.226 124 88 1 237 359 42 165 1.67e-12 68.6
Msa1367820 AT4G22880.2 30.693 202 136 3 5 203 91 291 4.83e-32 124
Msa1367820 AT4G22880.2 28.226 124 88 1 237 359 42 165 1.67e-12 68.6
Msa1367820 AT4G22880.3 30.693 202 136 3 5 203 91 291 4.83e-32 124
Msa1367820 AT4G22880.3 28.226 124 88 1 237 359 42 165 1.67e-12 68.6
Msa1367820 AT1G78550.2 33.831 201 129 3 3 202 15 212 8.46e-32 121
Msa1367820 AT5G05600.1 35.176 199 125 3 5 201 106 302 2.35e-31 122
Msa1367820 AT1G78550.1 33.831 201 129 3 3 202 93 290 3.49e-31 121
Msa1367820 AT1G78550.1 37.500 120 70 3 242 360 53 168 4.88e-12 67.0
Msa1367820 AT5G05600.2 35.829 187 116 3 5 189 106 290 3.15e-30 117
Msa1367820 AT4G16330.2 32.719 217 128 6 5 215 103 307 6.10e-29 115
Msa1367820 AT5G63590.1 33.824 204 129 5 2 202 50 250 1.08e-28 114
Msa1367820 AT5G63590.1 31.405 121 77 3 237 354 4 121 2.57e-13 70.5
Msa1367820 AT4G10500.1 34.286 210 128 4 6 215 86 285 2.09e-28 114
Msa1367820 AT5G63580.2 34.946 186 118 3 5 189 57 240 4.56e-28 110
Msa1367820 AT5G63580.2 29.412 119 77 2 242 360 19 130 4.00e-11 63.2
Msa1367820 AT4G16330.1 32.394 213 126 6 9 215 1 201 9.54e-28 110
Msa1367820 AT5G63580.1 33.846 195 126 3 5 198 57 249 1.02e-27 109
Msa1367820 AT5G63580.1 29.412 119 77 2 242 360 19 130 3.75e-11 63.2
Msa1367820 AT3G55970.1 32.683 205 132 4 1 201 92 294 2.54e-27 111
Msa1367820 AT3G55970.1 29.605 152 100 4 206 353 14 162 2.74e-13 70.9
Msa1367820 AT4G10490.1 35.751 193 121 3 6 198 84 273 8.30e-27 109
Msa1367820 AT3G55970.2 32.990 194 124 4 1 190 92 283 4.34e-26 106
Msa1367820 AT3G55970.2 29.605 152 100 4 206 353 14 162 2.00e-13 70.5
Msa1367820 AT5G63600.2 32.258 186 119 4 5 189 71 250 7.31e-26 106
Msa1367820 AT5G63595.1 31.016 187 108 4 5 191 63 228 9.95e-26 105
Msa1367820 AT2G36690.2 34.973 183 113 5 11 191 108 286 1.59e-25 106
Msa1367820 AT2G36690.1 34.973 183 113 5 11 191 108 286 1.59e-25 106
Msa1367820 AT5G63600.1 32.065 184 118 4 5 187 71 248 1.64e-25 105
Msa1367820 AT5G24530.1 31.606 193 130 2 6 198 77 267 1.67e-25 105
Msa1367820 AT3G11180.1 33.000 200 128 4 5 201 135 331 4.38e-25 105
Msa1367820 AT3G11180.2 33.000 200 128 4 5 201 135 331 4.44e-25 105
Msa1367820 AT2G44800.1 29.688 256 159 6 1 239 90 341 1.87e-24 103
Msa1367820 AT1G05010.1 32.338 201 122 5 5 201 45 235 3.36e-24 101
Msa1367820 AT5G43935.1 31.771 192 103 5 5 191 57 225 1.11e-23 99.8
Msa1367820 AT5G43935.1 31.304 115 74 2 245 359 19 128 4.05e-12 66.6
Msa1367820 AT5G43450.1 34.270 178 106 5 51 223 148 319 3.82e-23 99.4
Msa1367820 AT4G25300.2 37.984 129 72 2 78 202 72 196 4.00e-23 97.4
Msa1367820 AT1G77330.1 31.443 194 117 5 5 191 44 228 9.38e-23 97.4
Msa1367820 AT1G06640.1 31.278 227 140 7 5 223 108 326 9.92e-23 98.6
Msa1367820 AT3G60290.1 28.185 259 169 6 1 247 90 343 4.71e-22 96.3
Msa1367820 AT1G55290.1 32.161 199 127 5 6 201 101 294 6.48e-22 95.9
Msa1367820 AT1G06645.1 32.323 198 123 6 5 201 121 308 7.51e-22 96.3
Msa1367820 AT3G19000.2 33.333 201 120 7 1 189 71 269 8.10e-22 94.4
Msa1367820 AT3G13610.1 32.500 200 125 6 6 201 101 294 8.85e-22 95.5
Msa1367820 AT1G06640.2 33.333 189 116 6 6 192 109 289 9.15e-22 95.1
Msa1367820 AT3G51240.1 33.161 193 121 6 2 191 79 266 1.86e-21 94.7
Msa1367820 AT3G19010.2 35.176 199 107 8 8 190 73 265 1.95e-21 93.6
Msa1367820 AT1G03410.2 31.841 201 122 5 6 201 101 291 2.36e-21 94.4
Msa1367820 AT1G06640.3 33.880 183 111 6 5 185 108 282 2.38e-21 93.2
Msa1367820 AT3G51240.2 32.787 183 116 5 12 191 4 182 2.73e-21 92.8
Msa1367820 AT3G19000.1 32.394 213 130 7 1 201 71 281 2.94e-21 94.0
Msa1367820 AT1G03410.1 31.841 201 122 5 6 201 138 328 3.18e-21 94.4
Msa1367820 AT2G30830.1 36.667 150 88 3 79 223 168 315 4.17e-21 93.6
Msa1367820 AT1G06620.1 40.650 123 71 2 84 206 180 300 4.21e-21 93.6
Msa1367820 AT4G21200.1 29.949 197 126 5 6 201 87 272 4.24e-21 93.2
Msa1367820 AT3G61400.1 31.156 199 127 5 6 201 109 300 4.98e-21 93.6
Msa1367820 AT5G43450.2 38.406 138 79 4 51 188 148 279 7.17e-21 91.7
Msa1367820 AT3G19010.1 33.810 210 117 8 8 201 73 276 1.05e-20 92.4
Msa1367820 AT3G19010.4 33.810 210 117 8 8 201 73 276 1.05e-20 92.4
Msa1367820 AT1G60980.1 29.798 198 124 6 5 191 101 294 1.09e-20 92.8
Msa1367820 AT5G43440.1 31.081 222 136 8 41 252 138 352 2.28e-20 91.7
Msa1367820 AT5G07480.1 28.980 245 133 8 5 222 87 317 2.77e-20 91.3
Msa1367820 AT1G06650.2 30.939 181 111 5 50 223 153 326 2.99e-20 91.3
Msa1367820 AT1G62380.1 27.500 200 127 6 5 198 48 235 4.09e-20 90.1
Msa1367820 AT5G59530.1 33.750 160 100 4 42 201 141 294 8.93e-20 90.1
Msa1367820 AT5G07200.1 31.892 185 113 5 16 191 113 293 9.59e-20 90.1
Msa1367820 AT1G12010.1 28.796 191 122 6 5 191 48 228 2.00e-19 88.2
Msa1367820 AT3G61400.2 31.551 187 118 5 6 189 109 288 2.19e-19 87.8
Msa1367820 AT2G30840.1 41.525 118 67 2 84 201 177 292 2.82e-19 88.6
Msa1367820 AT1G06620.2 43.396 106 58 2 84 189 180 283 4.12e-19 86.7
Msa1367820 AT1G04380.1 29.775 178 114 5 51 223 131 302 8.28e-19 87.0
Msa1367820 AT5G43440.2 34.416 154 92 5 41 191 138 285 9.35e-19 85.9
Msa1367820 AT1G06650.1 33.562 146 89 4 50 194 153 291 9.90e-19 86.3
Msa1367820 AT1G15550.1 30.000 200 130 7 5 198 92 287 1.93e-18 85.9
Msa1367820 AT2G30840.3 41.880 117 66 2 84 200 177 291 2.12e-18 85.9
Msa1367820 AT1G03400.1 29.082 196 133 4 6 201 92 281 2.64e-18 85.5
Msa1367820 AT4G25310.2 30.303 198 107 5 6 202 92 259 2.99e-18 85.1
Msa1367820 AT4G25310.2 39.604 101 55 3 261 360 69 164 1.63e-11 65.1
Msa1367820 AT1G04350.1 27.358 212 142 5 18 223 112 317 3.89e-18 85.1
Msa1367820 AT1G04380.2 34.752 141 86 4 51 191 131 265 1.13e-17 82.4
Msa1367820 AT5G59540.1 28.448 232 151 8 6 229 105 329 1.27e-17 83.6
Msa1367820 AT3G12900.1 29.064 203 128 8 5 201 97 289 4.54e-17 82.0
Msa1367820 AT1G03400.2 30.435 184 122 4 6 189 92 269 5.62e-17 82.0
Msa1367820 AT4G25420.2 28.351 194 127 5 5 190 104 293 6.83e-17 80.9
Msa1367820 AT2G30840.2 42.857 105 58 2 84 188 177 279 8.21e-17 80.5
Msa1367820 AT5G07480.2 29.032 186 111 5 55 222 26 208 9.85e-17 79.3
Msa1367820 AT5G51810.2 30.102 196 124 7 3 190 101 291 1.11e-16 80.1
Msa1367820 AT4G25420.1 28.205 195 128 5 5 191 104 294 1.40e-16 80.9
Msa1367820 AT1G44090.1 28.796 191 127 4 7 191 109 296 1.83e-16 80.5
Msa1367820 AT2G25450.1 29.949 197 121 5 5 201 109 288 2.56e-16 79.7
Msa1367820 AT5G51810.1 29.949 197 125 7 3 191 101 292 5.79e-16 79.0
Msa1367820 AT3G19010.3 31.905 210 91 9 8 201 73 246 1.09e-15 77.4
Msa1367820 AT5G59540.2 29.570 186 123 6 6 189 105 284 1.22e-15 77.0
Msa1367820 AT1G80330.1 26.667 195 132 6 5 191 84 275 6.45e-15 75.5
Msa1367820 AT1G80340.1 28.708 209 133 9 3 202 83 284 2.68e-14 73.6
Msa1367820 AT1G78440.1 27.313 227 137 10 16 229 64 275 3.47e-14 73.2
Msa1367820 AT2G19590.1 28.571 147 96 5 50 191 89 231 6.85e-14 72.0
Msa1367820 AT2G19590.2 28.571 154 101 5 50 198 74 223 8.03e-14 71.6
Msa1367820 AT3G50210.4 27.536 207 122 8 6 191 60 259 3.96e-12 67.0
Msa1367820 AT3G50210.1 27.536 207 122 8 6 191 60 259 3.96e-12 67.0
Msa1367820 AT3G50210.3 27.536 207 122 8 6 191 60 259 3.96e-12 67.0
Msa1367820 AT5G12270.1 25.871 201 130 5 9 199 98 289 1.45e-11 65.5

Find 78 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGATTTGATTCTGAAAA+AGG 0.188200 tig0018558:-5506 Msa1367820:intergenic
ATAATTATTCAGATCTTAAA+AGG 0.235242 tig0018558:+5882 Msa1367820:CDS
ATAATTATTCAGATATTAAA+AGG 0.236912 tig0018558:+1490 Msa1367820:CDS
CCTATACCTGATCATGTTCT+AGG 0.238130 tig0018558:+2048 Msa1367820:CDS
TTTAAATTCCTTTCATCTTC+AGG 0.247234 tig0018558:-1549 Msa1367820:intergenic
TTTAAATTCCTTTCATCTTC+AGG 0.250885 tig0018558:-5941 Msa1367820:intergenic
TAAGATGTTATCGATTAATA+TGG 0.277978 tig0018558:+1159 Msa1367820:five_prime_UTR
CGACTCTTGTGGCTTCTTCA+TGG 0.281580 tig0018558:+5613 Msa1367820:CDS
CTCTCTCTCCACATTCCTTT+AGG 0.339255 tig0018558:-1987 Msa1367820:intergenic
GATTATCTTTGAGGACTTGC+AGG 0.347102 tig0018558:-2134 Msa1367820:intergenic
CAGATCTTAAAAGGAGTGAT+TGG 0.366917 tig0018558:+5891 Msa1367820:CDS
ATGAAAGGAATTTAAAACTT+TGG 0.376446 tig0018558:+5948 Msa1367820:CDS
CAACTTTATTGAGAAGTTAG+TGG 0.382600 tig0018558:-6001 Msa1367820:intergenic
CATGCTGATGTTGAAGGATA+TGG 0.389185 tig0018558:+1462 Msa1367820:CDS
AATTATTTGTATATATTTGA+AGG 0.392243 tig0018558:+1239 Msa1367820:five_prime_UTR
ACATTAACCAGGAGAGCATC+AGG 0.398903 tig0018558:-2180 Msa1367820:intergenic
TGAGCCACCGATTATCTTTG+AGG 0.402408 tig0018558:-2143 Msa1367820:intergenic
TGCTGTGCTATTGCTGTAGA+TGG 0.408505 tig0018558:-5563 Msa1367820:intergenic
CCCTCGTAGATATACTCATT+TGG 0.411581 tig0018558:-5458 Msa1367820:intergenic
AGGAGAGCATCAGGGACTAT+TGG 0.415991 tig0018558:-2171 Msa1367820:intergenic
CAGATATTAAAAGGAGTGAT+TGG 0.428124 tig0018558:+1499 Msa1367820:CDS
AATAGTCCCTGATGCTCTCC+TGG 0.440218 tig0018558:+2173 Msa1367820:CDS
CCTAGAACATGATCAGGTAT+AGG 0.444510 tig0018558:-2048 Msa1367820:intergenic
TCTTAATAGCAATGACTAAA+GGG 0.457883 tig0018558:-1141 Msa1367820:intergenic
CATGTCGAAATTAGCGAACT+TGG 0.460674 tig0018558:+1951 Msa1367820:CDS
TGCAAGTCCTCAAAGATAAT+CGG 0.466869 tig0018558:+2136 Msa1367820:CDS
AACAATATACCGAATGTGTA+TGG 0.474542 tig0018558:+1902 Msa1367820:CDS
ACAAAGTGAGGGAAGTTTCA+AGG 0.475102 tig0018558:+5777 Msa1367820:CDS
GATGTTATCGATTAATATGG+TGG 0.476053 tig0018558:+1162 Msa1367820:five_prime_UTR
AGATCTTAAAAGGAGTGATT+GGG 0.478731 tig0018558:+5892 Msa1367820:CDS
CTAGGCCATGCTGATGTTGA+AGG 0.480279 tig0018558:+1456 Msa1367820:CDS
TTCAAGCCTAGAACATGATC+AGG 0.485362 tig0018558:-2054 Msa1367820:intergenic
TGTTCTGCTGCAAGATAAAG+AGG 0.486954 tig0018558:+2104 Msa1367820:CDS
ACGGTTGATACTGAAGGATA+TGG 0.488295 tig0018558:+5854 Msa1367820:CDS
GGAAGAGAACTGTTTCCTAA+AGG 0.489443 tig0018558:+1972 Msa1367820:CDS
ATCTACAGCAATAGCACAGC+AGG 0.490548 tig0018558:+5565 Msa1367820:CDS
CTGCAAGATAAAGAGGTAGA+AGG 0.491422 tig0018558:+2111 Msa1367820:CDS
ATCTTAATAGCAATGACTAA+AGG 0.499616 tig0018558:-1142 Msa1367820:intergenic
CCTTCAGTATCAACCGTGCC+TGG 0.506617 tig0018558:-5848 Msa1367820:intergenic
CATATTACAGTCATTGACAT+TGG 0.509691 tig0018558:+5527 Msa1367820:CDS
ATATAGCTGCCATACACATT+CGG 0.510289 tig0018558:-1911 Msa1367820:intergenic
CACAAGAGTCGAGTGCAGAT+TGG 0.514232 tig0018558:-5601 Msa1367820:intergenic
GGCTTGAATGTACATTCTGA+TGG 0.520704 tig0018558:+2069 Msa1367820:CDS
GCTTGTTTCTTGACAAAGTG+AGG 0.525833 tig0018558:+1373 Msa1367820:CDS
GCTTGTTTCTTGACAAAGTG+AGG 0.525833 tig0018558:+5765 Msa1367820:CDS
GCAATTCTTTGAACTTCCAA+AGG 0.540464 tig0018558:+5799 Msa1367820:CDS
TGAATCACAGCAAAACAGTT+GGG 0.554599 tig0018558:-1327 Msa1367820:intergenic
GTTGGTGATCAAATGAAGGT+AGG 0.559981 tig0018558:+2201 Msa1367820:CDS
CAATCTGCACTCGACTCTTG+TGG 0.563131 tig0018558:+5602 Msa1367820:CDS
GATGCTCTCCTGGTTAATGT+TGG 0.567804 tig0018558:+2183 Msa1367820:CDS
CAAGTTCGCTAATTTCGACA+TGG 0.570600 tig0018558:-1950 Msa1367820:intergenic
CTGAATCACAGCAAAACAGT+TGG 0.571980 tig0018558:-1328 Msa1367820:intergenic
ATGAAAGGAATTTAAAACGT+TGG 0.573319 tig0018558:+1556 Msa1367820:CDS
GCATTTCTTTGAACTTCCAA+AGG 0.582260 tig0018558:+1407 Msa1367820:CDS
CTTGTTTCTTGACAAAGTGA+GGG 0.582916 tig0018558:+1374 Msa1367820:CDS
CTTGTTTCTTGACAAAGTGA+GGG 0.582916 tig0018558:+5766 Msa1367820:CDS
AACTGTTTCCTAAAGGAATG+TGG 0.583531 tig0018558:+1979 Msa1367820:CDS
AGGTACATCCTGAAGATGAA+AGG 0.586861 tig0018558:+1541 Msa1367820:CDS
AGGTACATCCTGAAGATGAA+AGG 0.586861 tig0018558:+5933 Msa1367820:CDS
GAAACAAGCTTGTCATACCA+TGG 0.609349 tig0018558:-1359 Msa1367820:intergenic
ACATGATCAGGTATAGGACA+TGG 0.612373 tig0018558:-2042 Msa1367820:intergenic
CCAGGCACGGTTGATACTGA+AGG 0.614618 tig0018558:+5848 Msa1367820:CDS
TTTGATCACCAACATTAACC+AGG 0.616855 tig0018558:-2191 Msa1367820:intergenic
TAATGTTGGTGATCAAATGA+AGG 0.623609 tig0018558:+2197 Msa1367820:CDS
GGCTGATAGAGTATATCTGA+AGG 0.636076 tig0018558:+5913 Msa1367820:CDS
GTCTGATAGAGTATATCTGA+AGG 0.643028 tig0018558:+1521 Msa1367820:CDS
GAAACAAGCTTGTCATACCA+TGG 0.643039 tig0018558:-5751 Msa1367820:intergenic
GTGATTCAGGTAATAAACCA+TGG 0.646590 tig0018558:+1342 Msa1367820:five_prime_UTR
CATATCCTTCAACATCAGCA+TGG 0.649723 tig0018558:-1461 Msa1367820:intergenic
CATTAACCAGGAGAGCATCA+GGG 0.657489 tig0018558:-2179 Msa1367820:intergenic
GTGATTCAGGCAATCAACCA+TGG 0.671758 tig0018558:+5734 Msa1367820:intron
AATGAGTATATCTACGAGGG+AGG 0.673860 tig0018558:+5461 Msa1367820:CDS
CCAAATGAGTATATCTACGA+GGG 0.674035 tig0018558:+5458 Msa1367820:CDS
TGATCAGGTATAGGACATGG+AGG 0.679934 tig0018558:-2039 Msa1367820:intergenic
AAGTCCTCAAAGATAATCGG+TGG 0.687188 tig0018558:+2139 Msa1367820:CDS
GATCAGGTATAGGACATGGA+GGG 0.692755 tig0018558:-2038 Msa1367820:intergenic
TCCAAATGAGTATATCTACG+AGG 0.727256 tig0018558:+5457 Msa1367820:CDS
TTGCTGTAGATGGAGACGTG+AGG 0.769859 tig0018558:-5553 Msa1367810:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTTGTATATATTTGA+AGG + tig0018558:1239-1258 Msa1367820:five_prime_UTR 10.0%
!! ATAATTATTCAGATATTAAA+AGG + tig0018558:1490-1509 Msa1367820:CDS 10.0%
!!! AAAAAAAAAAAATTCAAGTT+CGG - tig0018558:3319-3338 Msa1367820:intergenic 10.0%
!!! TTATTTTCCTTTTATTTTAT+TGG - tig0018558:3638-3657 Msa1367820:intergenic 10.0%
!!! AGTTTTTTTTTATACATATA+TGG + tig0018558:3853-3872 Msa1367820:intron 10.0%
!!! TATATATAAATTTTCAAGTT+CGG + tig0018558:4284-4303 Msa1367820:intron 10.0%
!!! CAAATAAGTTTTTTTTTTTA+GGG - tig0018558:4981-5000 Msa1367820:intergenic 10.0%
!!! ACAAATAAGTTTTTTTTTTT+AGG - tig0018558:4982-5001 Msa1367820:intergenic 10.0%
!! TAAAAAAAAAAACTTATTTG+TGG + tig0018558:4981-5000 Msa1367820:intron 10.0%
!!! TAATAATAATGATGATGATA+TGG - tig0018558:1710-1729 Msa1367820:intergenic 15.0%
!!! TTTACTCGTTTTTTTATTTT+AGG - tig0018558:3110-3129 Msa1367820:intergenic 15.0%
!! AAATAAAAAAACGAGTAAAT+AGG + tig0018558:3111-3130 Msa1367820:intron 15.0%
!!! AAAAAAAAAAATTCAAGTTC+GGG - tig0018558:3318-3337 Msa1367820:intergenic 15.0%
!! TGAATATCCAATAAAATAAA+AGG + tig0018558:3628-3647 Msa1367820:intron 15.0%
!!! CTTTTTATATTATTTAGCTT+TGG - tig0018558:3683-3702 Msa1367820:intergenic 15.0%
!! ACTAAATAATATAAAATGAC+TGG + tig0018558:3720-3739 Msa1367820:intron 15.0%
!! TATAGAATCACTAAATAATA+AGG + tig0018558:3752-3771 Msa1367820:intron 15.0%
!!! ATATATAAATTTTCAAGTTC+GGG + tig0018558:4285-4304 Msa1367820:intron 15.0%
!!! AAAAAAACTTTTTATTGATC+AGG + tig0018558:4505-4524 Msa1367820:intron 15.0%
!!! ACAAATAAGCATTTTTTTTA+GGG - tig0018558:4955-4974 Msa1367820:intergenic 15.0%
!! CAAAATTAACCAAAATTAAT+AGG - tig0018558:5068-5087 Msa1367820:intergenic 15.0%
!! AAAAGATAAAGAAAAAGATA+AGG + tig0018558:5169-5188 Msa1367820:intron 15.0%
!! AAAAGATAAAGAAAAAGATA+AGG + tig0018558:5169-5188 Msa1367820:intron 15.0%
!! ATAATTATTCAGATCTTAAA+AGG + tig0018558:5882-5901 Msa1367820:CDS 15.0%
!!! TAAGATGTTATCGATTAATA+TGG + tig0018558:1159-1178 Msa1367820:five_prime_UTR 20.0%
!!! GTGGATTTTTATATACTTTA+GGG + tig0018558:1181-1200 Msa1367820:five_prime_UTR 20.0%
!!! AGCTATATGAAGTAATTTTA+AGG + tig0018558:1926-1945 Msa1367820:CDS 20.0%
!!! GCTATATGAAGTAATTTTAA+GGG + tig0018558:1927-1946 Msa1367820:CDS 20.0%
!! ATGCATAATAAGATAATTAG+AGG - tig0018558:2486-2505 Msa1367820:intergenic 20.0%
!! TTATGCATTAATAACTACTT+TGG + tig0018558:2498-2517 Msa1367820:intron 20.0%
!! TATGCATTAATAACTACTTT+GGG + tig0018558:2499-2518 Msa1367820:intron 20.0%
!! ACTATTCTCACATAAAAATA+TGG + tig0018558:2633-2652 Msa1367820:intron 20.0%
!! AATCCTATCAGTTATATATA+GGG - tig0018558:2678-2697 Msa1367820:intergenic 20.0%
!!! TAAATTTTGAAAGCATCAAT+TGG - tig0018558:2942-2961 Msa1367820:intergenic 20.0%
!!! TTGAAGTTTTGTTAATATCA+GGG - tig0018558:3175-3194 Msa1367820:intergenic 20.0%
!!! ATTGAAGTTTTGTTAATATC+AGG - tig0018558:3176-3195 Msa1367820:intergenic 20.0%
!!! AAAAAAAAAATTCAAGTTCG+GGG - tig0018558:3317-3336 Msa1367820:intergenic 20.0%
!! GTATAGATGCAAATATATAT+AGG + tig0018558:3604-3623 Msa1367820:intron 20.0%
!! TGTAACATATATATGAGTAA+TGG - tig0018558:3786-3805 Msa1367820:intergenic 20.0%
!! TACTCATATATATGTTACAA+AGG + tig0018558:3787-3806 Msa1367820:intron 20.0%
!! TTTATACATATATGGTACAA+AGG + tig0018558:3861-3880 Msa1367820:intron 20.0%
!! ATTAACTGTGATATGTTATA+AGG - tig0018558:3979-3998 Msa1367820:intergenic 20.0%
!!! TATATAAATTTTCAAGTTCG+GGG + tig0018558:4286-4305 Msa1367820:intron 20.0%
!!! TTGAAGTTTTGTTAATTTCA+AGG + tig0018558:4429-4448 Msa1367820:intron 20.0%
!!! TGAAGTTTTGTTAATTTCAA+GGG + tig0018558:4430-4449 Msa1367820:intron 20.0%
!!! CACAAATAAGCATTTTTTTT+AGG - tig0018558:4956-4975 Msa1367820:intergenic 20.0%
!! CTAAAAAAAATGCTTATTTG+TGG + tig0018558:4954-4973 Msa1367820:intron 20.0%
!!! TCTTTATCTTTTATGTATAC+TGG - tig0018558:5161-5180 Msa1367820:intergenic 20.0%
!! AGAAAAAGATAAGGTAAAAA+TGG + tig0018558:5178-5197 Msa1367820:intron 20.0%
!!! TATCAAGATTTTCTGAAAAA+TGG + tig0018558:5302-5321 Msa1367820:intron 20.0%
!! TAATTGAGAATATCATTCTT+GGG - tig0018558:5706-5725 Msa1367820:intergenic 20.0%
!! TTAATTGAGAATATCATTCT+TGG - tig0018558:5707-5726 Msa1367820:intergenic 20.0%
!!! ATGAAAGGAATTTAAAACTT+TGG + tig0018558:5948-5967 Msa1367820:CDS 20.0%
!!! GGTGGATTTTTATATACTTT+AGG + tig0018558:1180-1199 Msa1367820:five_prime_UTR 25.0%
!! GAGATACGAATTAATTTTTC+TGG + tig0018558:1273-1292 Msa1367820:five_prime_UTR 25.0%
!!! TTAATTTTTCTGGTACATAG+TGG + tig0018558:1283-1302 Msa1367820:five_prime_UTR 25.0%
! TTTAAATTCCTTTCATCTTC+AGG - tig0018558:1552-1571 Msa1367820:intergenic 25.0%
!! ATGAAAGGAATTTAAAACGT+TGG + tig0018558:1556-1575 Msa1367820:CDS 25.0%
!! CTAAAATCATTGAGTTTTTG+TGG - tig0018558:1582-1601 Msa1367820:intergenic 25.0%
!! CACAAAAACTCAATGATTTT+AGG + tig0018558:1580-1599 Msa1367820:CDS 25.0%
! AACAGTGGATATTTCTTATA+TGG + tig0018558:1634-1653 Msa1367820:intron 25.0%
! ATGGTAAGCATAAATTGTTT+AGG + tig0018558:1653-1672 Msa1367820:intron 25.0%
! TTGAAATCAGAGTAAGAAAA+TGG - tig0018558:1760-1779 Msa1367820:intergenic 25.0%
! AAATAATTGTGTCACAGTTA+TGG - tig0018558:1814-1833 Msa1367820:intergenic 25.0%
! TGTTAAAATTCTCTTAAGTG+TGG + tig0018558:2239-2258 Msa1367820:intron 25.0%
!!! TTATTTTAGTTAAGATGCGT+TGG - tig0018558:2292-2311 Msa1367820:intergenic 25.0%
! GATAATTAGAGGAGAATTAT+TGG - tig0018558:2475-2494 Msa1367820:intergenic 25.0%
! ATAACACTTATTAGCATGAT+TGG + tig0018558:2599-2618 Msa1367820:intron 25.0%
! TAACACTTATTAGCATGATT+GGG + tig0018558:2600-2619 Msa1367820:intron 25.0%
! ATCCTATCAGTTATATATAG+GGG - tig0018558:2677-2696 Msa1367820:intergenic 25.0%
! CAATCCTATCAGTTATATAT+AGG - tig0018558:2679-2698 Msa1367820:intergenic 25.0%
!!! TGAAGTTTTGTTAATATCAG+GGG - tig0018558:3174-3193 Msa1367820:intergenic 25.0%
!! AAAAAAAAATTCAAGTTCGG+GGG - tig0018558:3316-3335 Msa1367820:intergenic 25.0%
!!! CTTTAATATCTTTTGAGTCA+AGG - tig0018558:3349-3368 Msa1367820:intergenic 25.0%
! CTTGACTCAAAAGATATTAA+AGG + tig0018558:3347-3366 Msa1367820:intron 25.0%
! CACTAAATAATAAGGAACAA+AGG + tig0018558:3760-3779 Msa1367820:intron 25.0%
! ATAAAAGTAACTGTGAGTAA+TGG - tig0018558:3887-3906 Msa1367820:intergenic 25.0%
! GCAAATAAGGCATAAATATA+GGG - tig0018558:3957-3976 Msa1367820:intergenic 25.0%
! GATATGTTATAAGGCAAATA+AGG - tig0018558:3970-3989 Msa1367820:intergenic 25.0%
! TTAATATACACATTAGAGGT+AGG - tig0018558:4052-4071 Msa1367820:intergenic 25.0%
! CTTCTTAATATACACATTAG+AGG - tig0018558:4056-4075 Msa1367820:intergenic 25.0%
! TTAATATACACATTAGAGGT+AGG - tig0018558:4052-4071 Msa1367820:intergenic 25.0%
! CTTCTTAATATACACATTAG+AGG - tig0018558:4056-4075 Msa1367820:intergenic 25.0%
! TGATTAACAGAAGAATTTGA+CGG + tig0018558:4360-4379 Msa1367820:intron 25.0%
!!! GAAGTTTTGTTAATTTCAAG+GGG + tig0018558:4431-4450 Msa1367820:intron 25.0%
! GTCAAATAAAACATGAGTTT+GGG - tig0018558:4683-4702 Msa1367820:intergenic 25.0%
! AGTCAAATAAAACATGAGTT+TGG - tig0018558:4684-4703 Msa1367820:intergenic 25.0%
!! ACAAGGAATTTTATAGAGTT+TGG + tig0018558:4743-4762 Msa1367820:intron 25.0%
! GCTAAATAAAAGCTTATTTG+TGG + tig0018558:4883-4902 Msa1367820:intron 25.0%
! GCTAAATAAAAGCTTATTTG+TGG + tig0018558:4883-4902 Msa1367820:intron 25.0%
!! GTTTAAGAGCCTATTAATTT+TGG + tig0018558:5056-5075 Msa1367820:intron 25.0%
!!! GGTTAATTTTGTTTTGTTCA+TGG + tig0018558:5077-5096 Msa1367820:intron 25.0%
!! TGAAGATTTGATTCTGAAAA+AGG - tig0018558:5509-5528 Msa1367820:intergenic 25.0%
! AATTAATTGTTGTGTGATTC+AGG + tig0018558:5721-5740 Msa1367820:intron 25.0%
! TTTAAATTCCTTTCATCTTC+AGG - tig0018558:1552-1571 Msa1367820:intergenic 25.0%
! GATGTTATCGATTAATATGG+TGG + tig0018558:1162-1181 Msa1367820:five_prime_UTR 30.0%
! AAAACAGTTGGGAATGTTTT+TGG - tig0018558:1319-1338 Msa1367820:intergenic 30.0%
!! CATTTTTGCTTTTCTTCCTT+TGG - tig0018558:1426-1445 Msa1367820:intergenic 30.0%
AAGAAAAGCAAAAATGTGCT+AGG + tig0018558:1430-1449 Msa1367820:CDS 30.0%
AGAAAAGCAAAAATGTGCTA+GGG + tig0018558:1431-1450 Msa1367820:CDS 30.0%
CAGATATTAAAAGGAGTGAT+TGG + tig0018558:1499-1518 Msa1367820:CDS 30.0%
!! TACTAAGTTCTGAATAACAG+TGG + tig0018558:1619-1638 Msa1367820:intron 30.0%
AACAATATATGTCATGTGAG+TGG + tig0018558:1854-1873 Msa1367820:intron 30.0%
AACAATATACCGAATGTGTA+TGG + tig0018558:1902-1921 Msa1367820:CDS 30.0%
!! TAATGTTGGTGATCAAATGA+AGG + tig0018558:2197-2216 Msa1367820:CDS 30.0%
GAAGGTAGGTAATATAACTT+CGG + tig0018558:2215-2234 Msa1367820:intron 30.0%
AAATATGGCATTCTTACTTG+AGG + tig0018558:2648-2667 Msa1367820:intron 30.0%
GTATCACATTCAATTTCAAC+AGG - tig0018558:2708-2727 Msa1367820:intergenic 30.0%
CTTCTCTGAATTTCATGAAA+TGG + tig0018558:2970-2989 Msa1367820:intron 30.0%
!! TTCACAACACACGTTTTATT+TGG - tig0018558:3009-3028 Msa1367820:intergenic 30.0%
ACGAAACTTACAATTTCAGA+GGG - tig0018558:3144-3163 Msa1367820:intergenic 30.0%
!!! GAAGTTTTGTTAATATCAGG+GGG - tig0018558:3173-3192 Msa1367820:intergenic 30.0%
TTAACGTTGTGCAATTTCAA+GGG - tig0018558:3203-3222 Msa1367820:intergenic 30.0%
ATTAACGTTGTGCAATTTCA+AGG - tig0018558:4396-4415 Msa1367820:intergenic 30.0%
TGACTAACAGAAGAATTTGA+CGG - tig0018558:3240-3259 Msa1367820:intergenic 30.0%
!! TATCTTTTGAGTCAAGGATA+AGG - tig0018558:3343-3362 Msa1367820:intergenic 30.0%
!!! CGAATTTTTGGTGTGAATTT+TGG - tig0018558:3423-3442 Msa1367820:intergenic 30.0%
! AAGACCTTTTTGCGAATTTT+TGG - tig0018558:3435-3454 Msa1367820:intergenic 30.0%
!! TTCTCAGCTGATTTTCATTT+TGG - tig0018558:3488-3507 Msa1367820:intergenic 30.0%
GGCATAAATATAGGGATAAT+AGG - tig0018558:3949-3968 Msa1367820:intergenic 30.0%
GGCAAATAAGGCATAAATAT+AGG - tig0018558:3958-3977 Msa1367820:intergenic 30.0%
GTTTCAATAGGAAATGCATT+TGG - tig0018558:4028-4047 Msa1367820:intergenic 30.0%
GTTTCAATAGGAAATGCATT+TGG - tig0018558:4028-4047 Msa1367820:intergenic 30.0%
CATATAAGTGCAAAACTTCA+GGG + tig0018558:4316-4335 Msa1367820:intron 30.0%
ATATAAGTGCAAAACTTCAG+GGG + tig0018558:4317-4336 Msa1367820:intron 30.0%
TTGACGAAACTTACAATTTC+AGG + tig0018558:4457-4476 Msa1367820:intron 30.0%
TGACGAAACTTACAATTTCA+GGG + tig0018558:4458-4477 Msa1367820:intron 30.0%
AATCACAGTGAACACTAAAT+GGG - tig0018558:4606-4625 Msa1367820:intergenic 30.0%
TGCAATGAGCTAATCTAATT+AGG + tig0018558:4625-4644 Msa1367820:intron 30.0%
!!! GCACACAAGCATTTTTTTTA+GGG - tig0018558:4910-4929 Msa1367820:intergenic 30.0%
!!! AGCACACAAGCATTTTTTTT+AGG - tig0018558:4911-4930 Msa1367820:intergenic 30.0%
! TGGAAAGCCAAATTTTTACA+GGG - tig0018558:5116-5135 Msa1367820:intergenic 30.0%
! TTGGAAAGCCAAATTTTTAC+AGG - tig0018558:5117-5136 Msa1367820:intergenic 30.0%
!! TTTTCTGAAAAATGGAAGAG+TGG + tig0018558:5310-5329 Msa1367820:intron 30.0%
! TTTCTGAAAAATGGAAGAGT+GGG + tig0018558:5311-5330 Msa1367820:intron 30.0%
TTGATCAGTCTCAAGAAAAA+TGG + tig0018558:5367-5386 Msa1367820:intron 30.0%
CATATTACAGTCATTGACAT+TGG + tig0018558:5527-5546 Msa1367820:CDS 30.0%
!! CATTTTTGCTTTTCTTCCTT+TGG - tig0018558:1426-1445 Msa1367820:intergenic 30.0%
AAGAAAAGCAAAAATGTGCT+AGG + tig0018558:1430-1449 Msa1367820:CDS 30.0%
AGAAAAGCAAAAATGTGCTA+GGG + tig0018558:1431-1450 Msa1367820:CDS 30.0%
AGATCTTAAAAGGAGTGATT+GGG + tig0018558:5892-5911 Msa1367820:CDS 30.0%
! CTGAAATCATTGAGTTTTTC+TGG - tig0018558:5974-5993 Msa1367820:intergenic 30.0%
CAGAAAAACTCAATGATTTC+AGG + tig0018558:5972-5991 Msa1367820:CDS 30.0%
!! ATTTTTCTGGTACATAGTGG+TGG + tig0018558:1286-1305 Msa1367820:five_prime_UTR 35.0%
TGAATCACAGCAAAACAGTT+GGG - tig0018558:1330-1349 Msa1367820:intergenic 35.0%
GTGATTCAGGTAATAAACCA+TGG + tig0018558:1342-1361 Msa1367820:five_prime_UTR 35.0%
! CTTGTTTCTTGACAAAGTGA+GGG + tig0018558:1374-1393 Msa1367820:CDS 35.0%
GCATTTCTTTGAACTTCCAA+AGG + tig0018558:1407-1426 Msa1367820:CDS 35.0%
GAAAAGCAAAAATGTGCTAG+GGG + tig0018558:1432-1451 Msa1367820:CDS 35.0%
AAAAGCAAAAATGTGCTAGG+GGG + tig0018558:1433-1452 Msa1367820:CDS 35.0%
GTCTGATAGAGTATATCTGA+AGG + tig0018558:1521-1540 Msa1367820:CDS 35.0%
ATATAGCTGCCATACACATT+CGG - tig0018558:1914-1933 Msa1367820:intergenic 35.0%
AACTGTTTCCTAAAGGAATG+TGG + tig0018558:1979-1998 Msa1367820:CDS 35.0%
TGCAAGTCCTCAAAGATAAT+CGG + tig0018558:2136-2155 Msa1367820:CDS 35.0%
TTTGATCACCAACATTAACC+AGG - tig0018558:2194-2213 Msa1367820:intergenic 35.0%
GTCCCCTATATATAACTGAT+AGG + tig0018558:2672-2691 Msa1367820:intron 35.0%
TGGTAGATTCAGAAAAGGAA+AGG + tig0018558:2775-2794 Msa1367820:intron 35.0%
! TTGGTTTGATCTCTTTCTCT+GGG - tig0018558:2824-2843 Msa1367820:intergenic 35.0%
!! ATTGGTTTGATCTCTTTCTC+TGG - tig0018558:2825-2844 Msa1367820:intergenic 35.0%
! TCGTTCACTAGTTTGTCAAT+TGG - tig0018558:2843-2862 Msa1367820:intergenic 35.0%
GTTGTGAAAATTCTGAGTTG+TGG + tig0018558:3021-3040 Msa1367820:intron 35.0%
CGAAACTTACAATTTCAGAG+GGG - tig0018558:3143-3162 Msa1367820:intergenic 35.0%
GACGAAACTTACAATTTCAG+AGG - tig0018558:4459-4478 Msa1367820:intergenic 35.0%
TAACGTTGTGCAATTTCAAG+GGG - tig0018558:3202-3221 Msa1367820:intergenic 35.0%
TAACAGAAGAATTTGACGGA+GGG - tig0018558:4364-4383 Msa1367820:intergenic 35.0%
ACATAAGTGCAAAACTTCAG+GGG - tig0018558:3285-3304 Msa1367820:intergenic 35.0%
CACATAAGTGCAAAACTTCA+GGG - tig0018558:3286-3305 Msa1367820:intergenic 35.0%
CACACCAAAAATTCGCAAAA+AGG + tig0018558:3428-3447 Msa1367820:intron 35.0%
! AATGCGGATGATTTTCATTG+TGG - tig0018558:3511-3530 Msa1367820:intergenic 35.0%
ACAATGAAAATCATCCGCAT+TGG + tig0018558:3510-3529 Msa1367820:intron 35.0%
ATGACAAGAACTATGCTACT+TGG - tig0018558:3557-3576 Msa1367820:intergenic 35.0%
!! ATTTAGCTTTGGAAGTTCAC+AGG - tig0018558:3672-3691 Msa1367820:intergenic 35.0%
TTAGAGGTAGGTGTTTCAAT+AGG - tig0018558:4040-4059 Msa1367820:intergenic 35.0%
TTAGAGGTAGGTGTTTCAAT+AGG - tig0018558:4040-4059 Msa1367820:intergenic 35.0%
GCATATAAGTGCAAAACTTC+AGG + tig0018558:4315-4334 Msa1367820:intron 35.0%
TATAAGTGCAAAACTTCAGG+GGG + tig0018558:4318-4337 Msa1367820:intron 35.0%
TTAACAGAAGAATTTGACGG+AGG + tig0018558:4363-4382 Msa1367820:intron 35.0%
GAAATCAATGTGCACTTTCT+TGG + tig0018558:4550-4569 Msa1367820:intron 35.0%
CAATCACAGTGAACACTAAA+TGG - tig0018558:4607-4626 Msa1367820:intergenic 35.0%
TCTCACGTAGTTACATTACA+TGG - tig0018558:4653-4672 Msa1367820:intergenic 35.0%
!! TGAGTGTCACTCGTTAATTT+TGG + tig0018558:5004-5023 Msa1367820:intron 35.0%
!! TTGTTTTGTTCATGGCACTA+TGG + tig0018558:5085-5104 Msa1367820:intron 35.0%
TGTATACTGGAAAGAGTTTG+TGG - tig0018558:5148-5167 Msa1367820:intergenic 35.0%
! CTCAAGAAAAATGGAAGTGT+CGG + tig0018558:5376-5395 Msa1367820:CDS 35.0%
TCCAAATGAGTATATCTACG+AGG + tig0018558:5457-5476 Msa1367820:CDS 35.0%
CCAAATGAGTATATCTACGA+GGG + tig0018558:5458-5477 Msa1367820:CDS 35.0%
! CTTGTTTCTTGACAAAGTGA+GGG + tig0018558:1374-1393 Msa1367820:CDS 35.0%
GCAATTCTTTGAACTTCCAA+AGG + tig0018558:5799-5818 Msa1367820:CDS 35.0%
GAAAAGCAAAAATGTGCTAG+GGG + tig0018558:1432-1451 Msa1367820:CDS 35.0%
AAAAGCAAAAATGTGCTAGG+GGG + tig0018558:1433-1452 Msa1367820:CDS 35.0%
CAGATCTTAAAAGGAGTGAT+TGG + tig0018558:5891-5910 Msa1367820:CDS 35.0%
CTGAATCACAGCAAAACAGT+TGG - tig0018558:1331-1350 Msa1367820:intergenic 40.0%
!! CAACTGTTTTGCTGTGATTC+AGG + tig0018558:1329-1348 Msa1367820:five_prime_UTR 40.0%
GAAACAAGCTTGTCATACCA+TGG - tig0018558:1362-1381 Msa1367820:intergenic 40.0%
! GCTTGTTTCTTGACAAAGTG+AGG + tig0018558:1373-1392 Msa1367820:CDS 40.0%
CATATCCTTCAACATCAGCA+TGG - tig0018558:1464-1483 Msa1367820:intergenic 40.0%
CATGCTGATGTTGAAGGATA+TGG + tig0018558:1462-1481 Msa1367820:CDS 40.0%
AGGTACATCCTGAAGATGAA+AGG + tig0018558:1541-1560 Msa1367820:CDS 40.0%
CAAGTTCGCTAATTTCGACA+TGG - tig0018558:1953-1972 Msa1367820:intergenic 40.0%
CATGTCGAAATTAGCGAACT+TGG + tig0018558:1951-1970 Msa1367820:CDS 40.0%
GGAAGAGAACTGTTTCCTAA+AGG + tig0018558:1972-1991 Msa1367820:CDS 40.0%
ACATGATCAGGTATAGGACA+TGG - tig0018558:2045-2064 Msa1367820:intergenic 40.0%
CCTAGAACATGATCAGGTAT+AGG - tig0018558:2051-2070 Msa1367820:intergenic 40.0%
CCTATACCTGATCATGTTCT+AGG + tig0018558:2048-2067 Msa1367820:CDS 40.0%
TTCAAGCCTAGAACATGATC+AGG - tig0018558:2057-2076 Msa1367820:intergenic 40.0%
GGCTTGAATGTACATTCTGA+TGG + tig0018558:2069-2088 Msa1367820:CDS 40.0%
TGTTCTGCTGCAAGATAAAG+AGG + tig0018558:2104-2123 Msa1367820:CDS 40.0%
CTGCAAGATAAAGAGGTAGA+AGG + tig0018558:2111-2130 Msa1367820:CDS 40.0%
! GATTATCTTTGAGGACTTGC+AGG - tig0018558:2137-2156 Msa1367820:intergenic 40.0%
AAGTCCTCAAAGATAATCGG+TGG + tig0018558:2139-2158 Msa1367820:CDS 40.0%
!! GTTGGTGATCAAATGAAGGT+AGG + tig0018558:2201-2220 Msa1367820:CDS 40.0%
! TTGTGATTTGCACTCTGTAG+TGG + tig0018558:2437-2456 Msa1367820:intron 40.0%
CTCTGTAGTGGTATTCACAT+AGG + tig0018558:2449-2468 Msa1367820:intron 40.0%
TACACACAGATGATGAGCAA+TGG + tig0018558:2725-2744 Msa1367820:intron 40.0%
ACACACAGATGATGAGCAAT+GGG + tig0018558:2726-2745 Msa1367820:intron 40.0%
TTCAAGAGTCCATTACACAG+CGG + tig0018558:2752-2771 Msa1367820:intron 40.0%
GAGGTCAATGCTATACAAAC+CGG + tig0018558:2866-2885 Msa1367820:intron 40.0%
TATTTCCAGTACTCCATCCA+AGG + tig0018558:2909-2928 Msa1367820:intron 40.0%
ATTTCCAGTACTCCATCCAA+GGG + tig0018558:2910-2929 Msa1367820:intron 40.0%
AACGTTGTGCAATTTCAAGG+GGG - tig0018558:3201-3220 Msa1367820:intergenic 40.0%
AACAGAAGAATTTGACGGAG+GGG - tig0018558:4365-4384 Msa1367820:intergenic 40.0%
CTAACAGAAGAATTTGACGG+AGG - tig0018558:3237-3256 Msa1367820:intergenic 40.0%
CATAAGTGCAAAACTTCAGG+GGG - tig0018558:3284-3303 Msa1367820:intergenic 40.0%
GCACATAAGTGCAAAACTTC+AGG - tig0018558:3287-3306 Msa1367820:intergenic 40.0%
TACCTGTGTCAAAACCAATG+CGG - tig0018558:3527-3546 Msa1367820:intergenic 40.0%
!!! ATTGGTTTTGACACAGGTAG+AGG + tig0018558:3528-3547 Msa1367820:intron 40.0%
AATGTTTCAAGAAGCTGCCA+TGG - tig0018558:4202-4221 Msa1367820:intergenic 40.0%
ACGTTGTGCAATTTCAGTTC+AGG + tig0018558:4400-4419 Msa1367820:intron 40.0%
CGTTGTGCAATTTCAGTTCA+GGG + tig0018558:4401-4420 Msa1367820:intron 40.0%
GTTGTGCAATTTCAGTTCAG+GGG + tig0018558:4402-4421 Msa1367820:intron 40.0%
CGAAACTTACAATTTCAGGG+AGG + tig0018558:4461-4480 Msa1367820:intron 40.0%
TAAATTCCAAACTCGTGCCA+TGG + tig0018558:4703-4722 Msa1367820:intron 40.0%
GGAACGTCCCTGTAAAAATT+TGG + tig0018558:5106-5125 Msa1367820:intron 40.0%
AGAGTTTGTGGCTTCTACTT+TGG - tig0018558:5136-5155 Msa1367820:intergenic 40.0%
!! GAAGTGTCGGTAGAGAAAAA+AGG + tig0018558:5389-5408 Msa1367820:CDS 40.0%
! TTTTAGATCAGTGCAAGAGC+TGG + tig0018558:5412-5431 Msa1367820:CDS 40.0%
CCCTCGTAGATATACTCATT+TGG - tig0018558:5461-5480 Msa1367820:intergenic 40.0%
AATGAGTATATCTACGAGGG+AGG + tig0018558:5461-5480 Msa1367820:CDS 40.0%
GAAACAAGCTTGTCATACCA+TGG - tig0018558:1362-1381 Msa1367820:intergenic 40.0%
! GCTTGTTTCTTGACAAAGTG+AGG + tig0018558:1373-1392 Msa1367820:CDS 40.0%
ACAAAGTGAGGGAAGTTTCA+AGG + tig0018558:1385-1404 Msa1367820:CDS 40.0%
! ACGGTTGATACTGAAGGATA+TGG + tig0018558:5854-5873 Msa1367820:CDS 40.0%
GGCTGATAGAGTATATCTGA+AGG + tig0018558:5913-5932 Msa1367820:CDS 40.0%
AGGTACATCCTGAAGATGAA+AGG + tig0018558:1541-1560 Msa1367820:CDS 40.0%
! GTGAGTGGATTTGTGAATGC+AGG + tig0018558:1869-1888 Msa1367820:intron 45.0%
CTCTCTCTCCACATTCCTTT+AGG - tig0018558:1990-2009 Msa1367820:intergenic 45.0%
GATCAGGTATAGGACATGGA+GGG - tig0018558:2041-2060 Msa1367820:intergenic 45.0%
TGATCAGGTATAGGACATGG+AGG - tig0018558:2042-2061 Msa1367820:intergenic 45.0%
! TGAGCCACCGATTATCTTTG+AGG - tig0018558:2146-2165 Msa1367820:intergenic 45.0%
!! CATTAACCAGGAGAGCATCA+GGG - tig0018558:2182-2201 Msa1367820:intergenic 45.0%
!! ACATTAACCAGGAGAGCATC+AGG - tig0018558:2183-2202 Msa1367820:intergenic 45.0%
GATGCTCTCCTGGTTAATGT+TGG + tig0018558:2183-2202 Msa1367820:CDS 45.0%
AATCTACCACCGCTGTGTAA+TGG - tig0018558:2764-2783 Msa1367820:intergenic 45.0%
AGCGGTGGTAGATTCAGAAA+AGG + tig0018558:2770-2789 Msa1367820:intron 45.0%
ACAAACTAGTGAACGAGTCG+AGG + tig0018558:2847-2866 Msa1367820:intron 45.0%
TACAAACCGGCGAAAGACTA+TGG + tig0018558:2879-2898 Msa1367820:intron 45.0%
TTATCCCTTGGATGGAGTAC+TGG - tig0018558:2917-2936 Msa1367820:intergenic 45.0%
AGTACTCCATCCAAGGGATA+AGG + tig0018558:2916-2935 Msa1367820:intron 45.0%
!! AATTGGCCTTATCCCTTGGA+TGG - tig0018558:2925-2944 Msa1367820:intergenic 45.0%
!! CATCAATTGGCCTTATCCCT+TGG - tig0018558:2929-2948 Msa1367820:intergenic 45.0%
ACAGAAGAATTTGACGGAGG+GGG - tig0018558:4366-4385 Msa1367820:intergenic 45.0%
!! GGGAGTATTTGCAAAACGTC+AGG - tig0018558:3264-3283 Msa1367820:intergenic 45.0%
!!! ATCCGCATTGGTTTTGACAC+AGG + tig0018558:3522-3541 Msa1367820:intron 45.0%
ACAGAAGAATTTGACGGAGG+AGG + tig0018558:4366-4385 Msa1367820:intron 45.0%
TTAGAACCATGGCACGAGTT+TGG - tig0018558:4712-4731 Msa1367820:intergenic 45.0%
! TTCTAAACAGTGGCGGAACA+AGG + tig0018558:4726-4745 Msa1367820:intron 45.0%
! TGCTGTGCTATTGCTGTAGA+TGG - tig0018558:5566-5585 Msa1367820:intergenic 45.0%
ATCTACAGCAATAGCACAGC+AGG + tig0018558:5565-5584 Msa1367820:CDS 45.0%
GTGATTCAGGCAATCAACCA+TGG + tig0018558:5734-5753 Msa1367820:intron 45.0%
!! TTATGATTATTTATATATTA+CGG - tig0018558:4780-4799 Msa1367820:intergenic 5.0%
CAAAAATGTGCTAGGGGGCT+AGG + tig0018558:1438-1457 Msa1367820:CDS 50.0%
CTAGGCCATGCTGATGTTGA+AGG + tig0018558:1456-1475 Msa1367820:CDS 50.0%
!! AGGAGAGCATCAGGGACTAT+TGG - tig0018558:2174-2193 Msa1367820:intergenic 50.0%
AATAGTCCCTGATGCTCTCC+TGG + tig0018558:2173-2192 Msa1367820:CDS 50.0%
AAGAGTCCATTACACAGCGG+TGG + tig0018558:2755-2774 Msa1367820:intron 50.0%
AAACCGGCGAAAGACTATGG+TGG + tig0018558:2882-2901 Msa1367820:intron 50.0%
AACCGGCGAAAGACTATGGT+GGG + tig0018558:2883-2902 Msa1367820:intron 50.0%
AACCCACCATAGTCTTTCGC+CGG - tig0018558:2888-2907 Msa1367820:intergenic 50.0%
!! CGTGCCATGGTTCTAAACAG+TGG + tig0018558:4716-4735 Msa1367820:intron 50.0%
!! GCCATGGTTCTAAACAGTGG+CGG + tig0018558:4719-4738 Msa1367820:intron 50.0%
! TCCGCCACTGTTTAGAACCA+TGG - tig0018558:4723-4742 Msa1367820:intergenic 50.0%
TTGCTGTAGATGGAGACGTG+AGG - tig0018558:5556-5575 Msa1367820:intergenic 50.0%
CACAAGAGTCGAGTGCAGAT+TGG - tig0018558:5604-5623 Msa1367820:intergenic 50.0%
CAATCTGCACTCGACTCTTG+TGG + tig0018558:5602-5621 Msa1367820:CDS 50.0%
CGACTCTTGTGGCTTCTTCA+TGG + tig0018558:5613-5632 Msa1367820:CDS 50.0%
CAAAAATGTGCTAGGGGGCC+AGG + tig0018558:5830-5849 Msa1367820:CDS 55.0%
CCTTCAGTATCAACCGTGCC+TGG - tig0018558:5851-5870 Msa1367820:intergenic 55.0%
! CCAGGCACGGTTGATACTGA+AGG + tig0018558:5848-5867 Msa1367820:CDS 55.0%
CTGCCTCACGAGCTGCTCCA+TGG + tig0018558:4182-4201 Msa1367820:intron 65.0%
CTGCCATGGAGCAGCTCGTG+AGG - tig0018558:4188-4207 Msa1367820:intergenic 65.0%
ATGTGCTAGGGGGCCAGGCA+CGG + tig0018558:5835-5854 Msa1367820:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0018558 gene 1144 6018 1144 ID=Msa1367820;Name=Msa1367820
tig0018558 mRNA 1144 6018 1144 ID=Msa1367820-mRNA-1;Parent=Msa1367820;Name=Msa1367820-mRNA-1;_AED=0.31;_eAED=0.31;_QI=222|0.66|0.25|1|0.66|0.75|4|0|367
tig0018558 exon 1144 1601 1144 ID=Msa1367820-mRNA-1:exon:160;Parent=Msa1367820-mRNA-1
tig0018558 exon 1891 2222 1891 ID=Msa1367820-mRNA-1:exon:161;Parent=Msa1367820-mRNA-1
tig0018558 exon 5375 5634 5375 ID=Msa1367820-mRNA-1:exon:162;Parent=Msa1367820-mRNA-1
tig0018558 exon 5743 6018 5743 ID=Msa1367820-mRNA-1:exon:163;Parent=Msa1367820-mRNA-1
tig0018558 five_prime_UTR 1144 1365 1144 ID=Msa1367820-mRNA-1:five_prime_utr;Parent=Msa1367820-mRNA-1
tig0018558 CDS 1366 1601 1366 ID=Msa1367820-mRNA-1:cds;Parent=Msa1367820-mRNA-1
tig0018558 CDS 1891 2222 1891 ID=Msa1367820-mRNA-1:cds;Parent=Msa1367820-mRNA-1
tig0018558 CDS 5375 5634 5375 ID=Msa1367820-mRNA-1:cds;Parent=Msa1367820-mRNA-1
tig0018558 CDS 5743 6018 5743 ID=Msa1367820-mRNA-1:cds;Parent=Msa1367820-mRNA-1
Gene Sequence

>Msa1367820

ATGACAAGCTTGTTTCTTGACAAAGTGAGGGAAGTTTCAAAGCATTTCTTTGAACTTCCAAAGGAAGAAAAGCAAAAATGTGCTAGGGGGCTAGGCCATGCTGATGTTGAAGGATATGGAAATGATAATTATTCAGATATTAAAAGGAGTGATTGGTCTGATAGAGTATATCTGAAGGTACATCCTGAAGATGAAAGGAATTTAAAACGTTGGCCACAAAAACTCAATGATTTTAGGAATACTACACAACAATATACCGAATGTGTATGGCAGCTATATGAAGTAATTTTAAGGGCCATGTCGAAATTAGCGAACTTGGAAGAGAACTGTTTCCTAAAGGAATGTGGAGAGAGAGCTGCAGTGTTTATGAGAATCAATTACTACCCTCCATGTCCTATACCTGATCATGTTCTAGGCTTGAATGTACATTCTGATGGATCATCTATAACTGTTCTGCTGCAAGATAAAGAGGTAGAAGGCCTGCAAGTCCTCAAAGATAATCGGTGGCTCAAAGTTCCAATAGTCCCTGATGCTCTCCTGGTTAATGTTGGTGATCAAATGAAGGTAGTCTCAAGAAAAATGGAAGTGTCGGTAGAGAAAAAAGGTTTTAGATCAGTGCAAGAGCTGGCATTGAATTCTGAAAATGTGACTCCAAATGAGTATATCTACGAGGGAGGTGTTGAACTTTATGATGCTCTTCCTTTTTCAGAATCAAATCTTCATATTACAGTCATTGACATTGGCAACCTCACGTCTCCATCTACAGCAATAGCACAGCAGGAGCTTCAGAAACTCCAATCTGCACTCGACTCTTGTGGCTTCTTCATGGCAATCAACCATGGTATGACAAGCTTGTTTCTTGACAAAGTGAGGGAAGTTTCAAGGCAATTCTTTGAACTTCCAAAGGAAGAAAAGCAAAAATGTGCTAGGGGGCCAGGCACGGTTGATACTGAAGGATATGGAAATGATAATTATTCAGATCTTAAAAGGAGTGATTGGGCTGATAGAGTATATCTGAAGGTACATCCTGAAGATGAAAGGAATTTAAAACTTTGGCCAGAAAAACTCAATGATTTCAGGTATAAACCACTAACTTCTCAATAA
Protein sequence

>Msa1367820

MTSLFLDKVREVSKHFFELPKEEKQKCARGLGHADVEGYGNDNYSDIKRSDWSDRVYLKVHPEDERNLKRWPQKLNDFRNTTQQYTECVWQLYEVILRAMSKLANLEENCFLKECGERAAVFMRINYYPPCPIPDHVLGLNVHSDGSSITVLLQDKEVEGLQVLKDNRWLKVPIVPDALLVNVGDQMKVVSRKMEVSVEKKGFRSVQELALNSENVTPNEYIYEGGVELYDALPFSESNLHITVIDIGNLTSPSTAIAQQELQKLQSALDSCGFFMAINHGMTSLFLDKVREVSRQFFELPKEEKQKCARGPGTVDTEGYGNDNYSDLKRSDWADRVYLKVHPEDERNLKLWPEKLNDFRYKPLTSQ*