AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0264350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264350 MtrunA17_Chr2g0328141 97.945 146 3 0 1 146 1 146 4.62e-103 291
Msa0264350 MtrunA17_Chr2g0328131 86.014 143 20 0 1 143 1 143 4.83e-69 205
Msa0264350 MtrunA17_Chr4g0068231 32.680 153 74 3 18 142 24 175 2.76e-20 82.0
Msa0264350 MtrunA17_Chr2g0294641 30.065 153 79 3 18 142 26 178 5.98e-17 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264350 AT2G28900.1 61.111 144 56 0 1 144 1 144 3.58e-65 195
Msa0264350 AT4G16160.1 28.758 153 82 3 18 143 21 173 3.41e-17 74.3
Msa0264350 AT4G16160.2 28.387 155 82 3 18 143 21 175 7.08e-17 73.6

Find 74 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTAATCTAGCTGTTGA+TGG 0.254458 2_2:-64259569 Msa0264350:CDS
TGGTTAGAAAATGATTTAAA+TGG 0.256408 2_2:+64257602 None:intergenic
TTGTTTGTCACTACAAATAT+TGG 0.257864 2_2:+64257411 None:intergenic
ATGCCTTGGAGCAGAATTTC+CGG 0.262488 2_2:-64259641 Msa0264350:CDS
TAGTTAACAGTATGAGTGTT+AGG 0.297129 2_2:+64259702 None:intergenic
AACCATCAACAGCTAGATTA+AGG 0.310083 2_2:+64259567 None:intergenic
TTTACCTGAATGAACTGAAT+TGG 0.321590 2_2:-64257681 Msa0264350:exon
TGTTTAAAACAAACTTTATG+AGG 0.337467 2_2:-64257564 Msa0264350:three_prime_UTR
GTTGATGGTTTCTTGAAGAT+TGG 0.371740 2_2:-64259554 Msa0264350:CDS
TGTGCAAGGAAGGTGCATAC+TGG 0.379148 2_2:-64258315 Msa0264350:CDS
ATGATCGGAGGTGCGGTGAC+AGG 0.380411 2_2:-64257804 Msa0264350:CDS
ATTGCAGTAGATGCCATTAC+AGG 0.382089 2_2:-64257741 Msa0264350:CDS
CTATTATTGCATGTTTGAAA+AGG 0.386937 2_2:-64257647 Msa0264350:three_prime_UTR
GGGTTGAATTGTATTACTAT+TGG 0.413413 2_2:-64257625 Msa0264350:three_prime_UTR
ACATCCAATTCAGTTCATTC+AGG 0.416427 2_2:+64257677 None:intergenic
ACCTCTAGTCCTTCACTTGA+AGG 0.418908 2_2:-64257441 Msa0264350:three_prime_UTR
TATTATTGCATGTTTGAAAA+GGG 0.422205 2_2:-64257646 Msa0264350:three_prime_UTR
GGATCCGTGGCACCAGAGAC+TGG 0.423846 2_2:-64258156 Msa0264350:CDS
TGCCTTGGAGCAGAATTTCC+GGG 0.441939 2_2:-64259640 Msa0264350:CDS
CGGGTCAGTGTCTTCTCCAC+AGG 0.444117 2_2:-64259621 Msa0264350:CDS
TCTACGCTCACAGGAGCTAT+AGG 0.446399 2_2:-64258214 Msa0264350:intron
AAAATACAAAGTTGAGTTTG+TGG 0.451118 2_2:-64257204 None:intergenic
GTCTTCTCCACAGGTGGATG+TGG 0.452189 2_2:-64259612 Msa0264350:CDS
TGACAAGACTAGAATATGTC+TGG 0.461727 2_2:+64257321 None:intergenic
GTATATGTTGGAACAGAATA+CGG 0.461937 2_2:-64258187 Msa0264350:CDS
AGTTAACAGTATGAGTGTTA+GGG 0.463335 2_2:+64259703 None:intergenic
AAACAAAGGATTGGACGATC+TGG 0.463407 2_2:+64257582 None:intergenic
TGATCGGAGGTGCGGTGACA+GGG 0.467838 2_2:-64257803 Msa0264350:CDS
TGTCACCGCACCTCCGATCA+TGG 0.470776 2_2:+64257806 None:intergenic
GTGCAAGGAAGGTGCATACT+GGG 0.476518 2_2:-64258314 Msa0264350:CDS
TTCAGTTCATTCAGGTAAAG+TGG 0.477368 2_2:+64257685 None:intergenic
GCTATAGGCGGCGTATATGT+TGG 0.477982 2_2:-64258199 Msa0264350:CDS
ATTCTTTACTCAGCCTCTCC+AGG 0.480324 2_2:-64257386 Msa0264350:three_prime_UTR
TGAGAGAATTACCCAGTCTC+TGG 0.488901 2_2:+64258144 None:intergenic
GGCAATTGCAGCCCCTGTAA+TGG 0.494547 2_2:+64257728 None:intergenic
TAAAGAGTACCTCAGTAGCC+TGG 0.497412 2_2:+64257368 None:intergenic
CTAGAATATGTCTGGTGGTA+CGG 0.518828 2_2:+64257329 None:intergenic
CTGAAGAAGATGTGCAAGGA+AGG 0.520056 2_2:-64258325 Msa0264350:CDS
TATATGTTGGAACAGAATAC+GGG 0.532988 2_2:-64258186 Msa0264350:CDS
GTTTAAAACAAACTTTATGA+GGG 0.540955 2_2:-64257563 Msa0264350:three_prime_UTR
GTCAGTGTCTTCTCCACAGG+TGG 0.548058 2_2:-64259618 Msa0264350:CDS
TTGCAGTAGATGCCATTACA+GGG 0.565602 2_2:-64257740 Msa0264350:CDS
ACTCAGTTACTCGACGGAGC+AGG 0.574093 2_2:+64257286 None:intergenic
TCCTTCAAGTGAAGGACTAG+AGG 0.578910 2_2:+64257440 None:intergenic
CTGCAGAAGAATGCCATGAT+CGG 0.581201 2_2:-64257819 Msa0264350:intron
GATCGGAGGTGCGGTGACAG+GGG 0.583014 2_2:-64257802 Msa0264350:CDS
ACTCTTTCTGACAATATGAA+AGG 0.589407 2_2:+64259414 None:intergenic
GTTTATGAATTCTGCAGCAG+TGG 0.590673 2_2:+64257707 None:intergenic
TTACCCAGTCTCTGGTGCCA+CGG 0.593471 2_2:+64258152 None:intergenic
GATCCGTGGCACCAGAGACT+GGG 0.594640 2_2:-64258155 Msa0264350:intron
AGCTACAAGGGCACTTGCAG+AGG 0.594831 2_2:-64259440 Msa0264350:CDS
GGATGAAGTCCTTCAAGTGA+AGG 0.595597 2_2:+64257432 None:intergenic
AAAGCAATCCTGTCATGCAT+AGG 0.599403 2_2:+64259798 None:intergenic
GGTGGATGTGGTCATAGACA+TGG 0.601669 2_2:-64259600 Msa0264350:CDS
GAACAGAATACGGGGTAGAG+AGG 0.617900 2_2:-64258177 Msa0264350:CDS
ATTATTGCATGTTTGAAAAG+GGG 0.627567 2_2:-64257645 Msa0264350:three_prime_UTR
CTGTGGAGAAGACACTGACC+CGG 0.631326 2_2:+64259622 None:intergenic
GACCCGGAAATTCTGCTCCA+AGG 0.633432 2_2:+64259638 None:intergenic
GAATGCCATGATCGGAGGTG+CGG 0.635353 2_2:-64257811 Msa0264350:CDS
ACACTACAAAGCAAATGAGA+AGG 0.637754 2_2:-64257513 Msa0264350:three_prime_UTR
AGTACCTCAGTAGCCTGGAG+AGG 0.644631 2_2:+64257373 None:intergenic
CAGAAGAATGCCATGATCGG+AGG 0.646513 2_2:-64257816 Msa0264350:CDS
TCAACAGCTAGATTAAGGAA+AGG 0.647866 2_2:+64259572 None:intergenic
TATAATACTCAGTTACTCGA+CGG 0.658312 2_2:+64257280 None:intergenic
GTGGATGTGGTCATAGACAT+GGG 0.661394 2_2:-64259599 Msa0264350:CDS
TCAGCCTCTCCAGGCTACTG+AGG 0.666168 2_2:-64257377 Msa0264350:three_prime_UTR
TCTATGACCACATCCACCTG+TGG 0.676186 2_2:+64259605 None:intergenic
TACGGGGTAGAGAGGATCCG+TGG 0.679908 2_2:-64258169 Msa0264350:CDS
TGCAAGGAAGGTGCATACTG+GGG 0.686067 2_2:-64258313 Msa0264350:intron
TGCAGTAGATGCCATTACAG+GGG 0.693597 2_2:-64257739 Msa0264350:CDS
CAAGACTAGAATATGTCTGG+TGG 0.704683 2_2:+64257324 None:intergenic
GCAGCTGAAGAAGATGTGCA+AGG 0.725846 2_2:-64258329 Msa0264350:intron
ATATGTTGGAACAGAATACG+GGG 0.766118 2_2:-64258185 Msa0264350:CDS
ACGCTCACAGGAGCTATAGG+CGG 0.791553 2_2:-64258211 Msa0264350:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGACAATTTTAACAAAA+GGG + chr2_2:64257651-64257670 None:intergenic 15.0%
!! ATTGACATTCATTAATTAAA+GGG + chr2_2:64258403-64258422 None:intergenic 15.0%
!!! ATAAAGTTTGTTTTAAACAA+AGG + chr2_2:64259449-64259468 None:intergenic 15.0%
!!! CTTTTGACAATTTTAACAAA+AGG + chr2_2:64257652-64257671 None:intergenic 20.0%
!! AAAGATGAAAAATTTGATTC+TGG - chr2_2:64257668-64257687 Msa0264350:three_prime_UTR 20.0%
!! TAATAACACAAATCTAAACA+AGG + chr2_2:64257715-64257734 None:intergenic 20.0%
!! GAAATTTAACACATTGATAT+TGG + chr2_2:64257742-64257761 None:intergenic 20.0%
!! ACAATACTTCAAAAAGAAAA+AGG + chr2_2:64257772-64257791 None:intergenic 20.0%
!!! ATTTAACATTGTTGTTATCA+TGG - chr2_2:64257893-64257912 Msa0264350:intron 20.0%
!! CAATTAGAAATGTATAAAAC+TGG + chr2_2:64257969-64257988 None:intergenic 20.0%
!! GATTGACATTCATTAATTAA+AGG + chr2_2:64258404-64258423 None:intergenic 20.0%
!!! TAGAGAAAACACTTTATTTT+TGG - chr2_2:64258957-64258976 Msa0264350:intron 20.0%
!! TATTATTGCATGTTTGAAAA+GGG - chr2_2:64259368-64259387 Msa0264350:intron 20.0%
!! TGGTTAGAAAATGATTTAAA+TGG + chr2_2:64259415-64259434 None:intergenic 20.0%
!!! TGTTTAAAACAAACTTTATG+AGG - chr2_2:64259450-64259469 Msa0264350:intron 20.0%
!!! GTTTAAAACAAACTTTATGA+GGG - chr2_2:64259451-64259470 Msa0264350:intron 20.0%
!!! TTATCATGGTTGATTCTTTT+GGG - chr2_2:64257907-64257926 Msa0264350:intron 25.0%
!! AAATATCAGGATAGATTTTC+AGG + chr2_2:64257946-64257965 None:intergenic 25.0%
! TGTATAAAACTGGAAATATC+AGG + chr2_2:64257959-64257978 None:intergenic 25.0%
!! ATTGTGAGTATTTTACAGAT+TGG - chr2_2:64257985-64258004 Msa0264350:intron 25.0%
! TAGATAAGCTATGATGAAAA+AGG + chr2_2:64258036-64258055 None:intergenic 25.0%
! CTTAACTGTCAAATCAAAAT+TGG - chr2_2:64258174-64258193 Msa0264350:CDS 25.0%
! TGAGAATCTAAATTCTCAAA+AGG - chr2_2:64258311-64258330 Msa0264350:intron 25.0%
! GAGAATCTAAATTCTCAAAA+GGG - chr2_2:64258312-64258331 Msa0264350:intron 25.0%
! TGTGAGTAAAATAAGCATTT+CGG - chr2_2:64258345-64258364 Msa0264350:intron 25.0%
!!! AACATATAACCTTTGAAATG+TGG - chr2_2:64258497-64258516 Msa0264350:intron 25.0%
! ATTTCTGTTTCGTAAATTTG+AGG - chr2_2:64258553-64258572 Msa0264350:intron 25.0%
! TTTCTGTTTCGTAAATTTGA+GGG - chr2_2:64258554-64258573 Msa0264350:intron 25.0%
! TTGTGTTGCATTATGTAATA+TGG - chr2_2:64258730-64258749 Msa0264350:intron 25.0%
! TTATTAACAAGCATCATGTT+TGG - chr2_2:64259026-64259045 Msa0264350:intron 25.0%
! GAAATGAATTTGTAAAAGCT+GGG - chr2_2:64259048-64259067 Msa0264350:intron 25.0%
! CTATTATTGCATGTTTGAAA+AGG - chr2_2:64259367-64259386 Msa0264350:intron 25.0%
! ATTATTGCATGTTTGAAAAG+GGG - chr2_2:64259369-64259388 Msa0264350:intron 25.0%
!!! GTTTGTTTTAAACAAAGGAT+TGG + chr2_2:64259444-64259463 None:intergenic 25.0%
! TTGTTTGTCACTACAAATAT+TGG + chr2_2:64259606-64259625 None:intergenic 25.0%
!!! TCTAGTCTTGTCAAAATTTT+CGG - chr2_2:64259703-64259722 Msa0264350:five_prime_UTR 25.0%
!!! ACATTCCTTTTTCACATAAA+AGG - chr2_2:64259768-64259787 Msa0264350:intron 25.0%
!! AACAACCTTTTATGTGAAAA+AGG + chr2_2:64259776-64259795 None:intergenic 25.0%
!!! TTTGTATTTTTACTCGTTAG+TGG + chr2_2:64259800-64259819 None:intergenic 25.0%
AGTTAACAGTATGAGTGTTA+GGG + chr2_2:64257314-64257333 None:intergenic 30.0%
TAGTTAACAGTATGAGTGTT+AGG + chr2_2:64257315-64257334 None:intergenic 30.0%
ACTCTTTCTGACAATATGAA+AGG + chr2_2:64257603-64257622 None:intergenic 30.0%
!! GTTATCATGGTTGATTCTTT+TGG - chr2_2:64257906-64257925 Msa0264350:intron 30.0%
!! TATCATGGTTGATTCTTTTG+GGG - chr2_2:64257908-64257927 Msa0264350:intron 30.0%
TCTTAGCTAGGGAAAAATAA+TGG - chr2_2:64258085-64258104 Msa0264350:intron 30.0%
! ATCTGGATTCTCTCATTTTA+GGG - chr2_2:64258123-64258142 Msa0264350:intron 30.0%
TATTTATCAAAGTCTGAACG+CGG + chr2_2:64258205-64258224 None:intergenic 30.0%
! GTATCATCATCTTTGCATTT+TGG + chr2_2:64258231-64258250 None:intergenic 30.0%
AAAATAAGCATTTCGGTCTT+CGG - chr2_2:64258352-64258371 Msa0264350:intron 30.0%
!! TTTCATTGACTTTGATAGGA+GGG + chr2_2:64258435-64258454 None:intergenic 30.0%
!! AGTCTTTCATTGACTTTGAT+AGG + chr2_2:64258439-64258458 None:intergenic 30.0%
ACACATAACCTTTCAATTCA+AGG - chr2_2:64258524-64258543 Msa0264350:intron 30.0%
CACATAACCTTTCAATTCAA+GGG - chr2_2:64258525-64258544 Msa0264350:intron 30.0%
ATTTAGTCCCTTGAATTGAA+AGG + chr2_2:64258535-64258554 None:intergenic 30.0%
TTCTGTTTCGTAAATTTGAG+GGG - chr2_2:64258555-64258574 Msa0264350:intron 30.0%
AAGACTATCTCTCATTAACA+AGG + chr2_2:64258662-64258681 None:intergenic 30.0%
GTATATGTTGGAACAGAATA+CGG - chr2_2:64258827-64258846 Msa0264350:intron 30.0%
TATATGTTGGAACAGAATAC+GGG - chr2_2:64258828-64258847 Msa0264350:intron 30.0%
GGAAATGAATTTGTAAAAGC+TGG - chr2_2:64259047-64259066 Msa0264350:intron 30.0%
! TGTGTACACTTTCTTTTAGA+CGG - chr2_2:64259080-64259099 Msa0264350:intron 30.0%
TTTACCTGAATGAACTGAAT+TGG - chr2_2:64259333-64259352 Msa0264350:intron 30.0%
GGGTTGAATTGTATTACTAT+TGG - chr2_2:64259389-64259408 Msa0264350:intron 30.0%
TATAATACTCAGTTACTCGA+CGG + chr2_2:64259737-64259756 None:intergenic 30.0%
AAAAATGTCCTATGCATGAC+AGG - chr2_2:64257208-64257227 Msa0264350:three_prime_UTR 35.0%
! TCACAACATCATCTTTTGTG+TGG - chr2_2:64257251-64257270 Msa0264350:three_prime_UTR 35.0%
! CACAACATCATCTTTTGTGT+GGG - chr2_2:64257252-64257271 Msa0264350:three_prime_UTR 35.0%
TATATCTAGCTAGCTAGCAA+GGG + chr2_2:64257282-64257301 None:intergenic 35.0%
ATATATCTAGCTAGCTAGCA+AGG + chr2_2:64257283-64257302 None:intergenic 35.0%
TCAACAGCTAGATTAAGGAA+AGG + chr2_2:64257445-64257464 None:intergenic 35.0%
TTCCTTAATCTAGCTGTTGA+TGG - chr2_2:64257445-64257464 Msa0264350:three_prime_UTR 35.0%
AACCATCAACAGCTAGATTA+AGG + chr2_2:64257450-64257469 None:intergenic 35.0%
!! GTTGATGGTTTCTTGAAGAT+TGG - chr2_2:64257460-64257479 Msa0264350:three_prime_UTR 35.0%
! TGAAAAAGAAGAAGGTTGGT+TGG + chr2_2:64257548-64257567 None:intergenic 35.0%
! AACCAACCTTCTTCTTTTTC+AGG - chr2_2:64257547-64257566 Msa0264350:three_prime_UTR 35.0%
AACCTGAAAAAGAAGAAGGT+TGG + chr2_2:64257552-64257571 None:intergenic 35.0%
TAACAAAACATGTCTGTTCC+AGG - chr2_2:64257819-64257838 Msa0264350:intron 35.0%
TCATTACTTGAAACACTTCC+TGG + chr2_2:64257840-64257859 None:intergenic 35.0%
CTTATCTAAGAGTAGAGTGT+TGG - chr2_2:64258048-64258067 Msa0264350:intron 35.0%
!! TAAGAGTAGAGTGTTGGATT+GGG - chr2_2:64258054-64258073 Msa0264350:intron 35.0%
! GATCTGGATTCTCTCATTTT+AGG - chr2_2:64258122-64258141 Msa0264350:intron 35.0%
ATTTATCAAAGTCTGAACGC+GGG + chr2_2:64258204-64258223 None:intergenic 35.0%
GCGTTCAGACTTTGATAAAT+AGG - chr2_2:64258204-64258223 Msa0264350:CDS 35.0%
TCTAAATTCTCAAAAGGGCA+TGG - chr2_2:64258317-64258336 Msa0264350:CDS 35.0%
! CTAAATTCTCAAAAGGGCAT+GGG - chr2_2:64258318-64258337 Msa0264350:CDS 35.0%
!! CTTTCATTGACTTTGATAGG+AGG + chr2_2:64258436-64258455 None:intergenic 35.0%
! AACCAGCTTGTACAATTTTG+AGG - chr2_2:64258586-64258605 Msa0264350:intron 35.0%
ATATGTTGGAACAGAATACG+GGG - chr2_2:64258829-64258848 Msa0264350:intron 35.0%
ACTGGGTAATTCTCTCAATA+GGG - chr2_2:64258876-64258895 Msa0264350:intron 35.0%
GCAGTACATCAAAAGACAAA+GGG + chr2_2:64259179-64259198 None:intergenic 35.0%
TGCAGTACATCAAAAGACAA+AGG + chr2_2:64259180-64259199 None:intergenic 35.0%
!!! CTTGTCTTTTTTGTTGTTGC+TGG + chr2_2:64259253-64259272 None:intergenic 35.0%
TTCAGTTCATTCAGGTAAAG+TGG + chr2_2:64259332-64259351 None:intergenic 35.0%
ACATCCAATTCAGTTCATTC+AGG + chr2_2:64259340-64259359 None:intergenic 35.0%
ACACTACAAAGCAAATGAGA+AGG - chr2_2:64259501-64259520 Msa0264350:intron 35.0%
TGACAAGACTAGAATATGTC+TGG + chr2_2:64259696-64259715 None:intergenic 35.0%
AAAGCAATCCTGTCATGCAT+AGG + chr2_2:64257219-64257238 None:intergenic 40.0%
ATATCTAGCTAGCTAGCAAG+GGG + chr2_2:64257281-64257300 None:intergenic 40.0%
AGTGAGTGTGAAAAATGCCT+TGG - chr2_2:64257359-64257378 Msa0264350:three_prime_UTR 40.0%
CTGCAACCTGAAAAAGAAGA+AGG + chr2_2:64257556-64257575 None:intergenic 40.0%
!!! TTTTTCAGGTTGCAGCTACA+AGG - chr2_2:64257561-64257580 Msa0264350:three_prime_UTR 40.0%
!!! TTTTCAGGTTGCAGCTACAA+GGG - chr2_2:64257562-64257581 Msa0264350:three_prime_UTR 40.0%
CAAAAGGGCTATAGCAAAAG+TGG + chr2_2:64257636-64257655 None:intergenic 40.0%
!! CTAAGAGTAGAGTGTTGGAT+TGG - chr2_2:64258053-64258072 Msa0264350:intron 40.0%
AGCTAGGGAAAAATAATGGC+AGG - chr2_2:64258089-64258108 Msa0264350:intron 40.0%
GCTAGGGAAAAATAATGGCA+GGG - chr2_2:64258090-64258109 Msa0264350:intron 40.0%
ATGAGAGAATCCAGATCTAG+AGG + chr2_2:64258119-64258138 None:intergenic 40.0%
TGTGTAGCACCACATTTCAA+AGG + chr2_2:64258509-64258528 None:intergenic 40.0%
GTCCTCAAAATTGTACAAGC+TGG + chr2_2:64258591-64258610 None:intergenic 40.0%
! ATTTTCCTTTCTACGCTCAC+AGG - chr2_2:64258791-64258810 Msa0264350:intron 40.0%
GACTGGGTAATTCTCTCAAT+AGG - chr2_2:64258875-64258894 Msa0264350:intron 40.0%
TGGACTTGTCGTTAACATGA+TGG - chr2_2:64258977-64258996 Msa0264350:intron 40.0%
TCAGTTGAGAGTCTTACCTA+AGG - chr2_2:64259142-64259161 Msa0264350:intron 40.0%
AAAAGACAAAGGGAACAGAG+TGG + chr2_2:64259169-64259188 None:intergenic 40.0%
ATTGCAGTAGATGCCATTAC+AGG - chr2_2:64259273-64259292 Msa0264350:intron 40.0%
TTGCAGTAGATGCCATTACA+GGG - chr2_2:64259274-64259293 Msa0264350:intron 40.0%
GTTTATGAATTCTGCAGCAG+TGG + chr2_2:64259310-64259329 None:intergenic 40.0%
AAACAAAGGATTGGACGATC+TGG + chr2_2:64259435-64259454 None:intergenic 40.0%
CTAGAATATGTCTGGTGGTA+CGG + chr2_2:64259688-64259707 None:intergenic 40.0%
CAAGACTAGAATATGTCTGG+TGG + chr2_2:64259693-64259712 None:intergenic 40.0%
ATGCCTTGGAGCAGAATTTC+CGG - chr2_2:64257373-64257392 Msa0264350:three_prime_UTR 45.0%
GTGGATGTGGTCATAGACAT+GGG - chr2_2:64257415-64257434 Msa0264350:three_prime_UTR 45.0%
!! TGGGAGGTTTAGTCTTAGCT+AGG - chr2_2:64258073-64258092 Msa0264350:intron 45.0%
!! GGGAGGTTTAGTCTTAGCTA+GGG - chr2_2:64258074-64258093 Msa0264350:intron 45.0%
TTTCGGTCTTCGGAATTGCA+AGG - chr2_2:64258362-64258381 Msa0264350:intron 45.0%
CTGAAGAAGATGTGCAAGGA+AGG - chr2_2:64258689-64258708 Msa0264350:intron 45.0%
TGAGAGAATTACCCAGTCTC+TGG + chr2_2:64258873-64258892 None:intergenic 45.0%
GGGTAATTCTCTCAATAGGG+TGG - chr2_2:64258879-64258898 Msa0264350:intron 45.0%
CTGCAGAAGAATGCCATGAT+CGG - chr2_2:64259195-64259214 Msa0264350:intron 45.0%
TGCAGTAGATGCCATTACAG+GGG - chr2_2:64259275-64259294 Msa0264350:intron 45.0%
ACCTCTAGTCCTTCACTTGA+AGG - chr2_2:64259573-64259592 Msa0264350:CDS 45.0%
TCCTTCAAGTGAAGGACTAG+AGG + chr2_2:64259577-64259596 None:intergenic 45.0%
GGATGAAGTCCTTCAAGTGA+AGG + chr2_2:64259585-64259604 None:intergenic 45.0%
ATTCTTTACTCAGCCTCTCC+AGG - chr2_2:64259628-64259647 Msa0264350:CDS 45.0%
!! TAAAGAGTACCTCAGTAGCC+TGG + chr2_2:64259649-64259668 None:intergenic 45.0%
TGCCTTGGAGCAGAATTTCC+GGG - chr2_2:64257374-64257393 Msa0264350:three_prime_UTR 50.0%
TCTATGACCACATCCACCTG+TGG + chr2_2:64257412-64257431 None:intergenic 50.0%
GGTGGATGTGGTCATAGACA+TGG - chr2_2:64257414-64257433 Msa0264350:three_prime_UTR 50.0%
!! GAGTAGAGTGTTGGATTGGG+AGG - chr2_2:64258057-64258076 Msa0264350:intron 50.0%
GCAGCTGAAGAAGATGTGCA+AGG - chr2_2:64258685-64258704 Msa0264350:intron 50.0%
! TGTGCAAGGAAGGTGCATAC+TGG - chr2_2:64258699-64258718 Msa0264350:intron 50.0%
! GTGCAAGGAAGGTGCATACT+GGG - chr2_2:64258700-64258719 Msa0264350:intron 50.0%
! TGCAAGGAAGGTGCATACTG+GGG - chr2_2:64258701-64258720 Msa0264350:intron 50.0%
TAGCTCCTGTGAGCGTAGAA+AGG + chr2_2:64258799-64258818 None:intergenic 50.0%
TCTACGCTCACAGGAGCTAT+AGG - chr2_2:64258800-64258819 Msa0264350:intron 50.0%
GCTATAGGCGGCGTATATGT+TGG - chr2_2:64258815-64258834 Msa0264350:intron 50.0%
GAACAGAATACGGGGTAGAG+AGG - chr2_2:64258837-64258856 Msa0264350:intron 50.0%
AAGGGAACAGAGTGGTCCTT+AGG + chr2_2:64259161-64259180 None:intergenic 50.0%
CAGAAGAATGCCATGATCGG+AGG - chr2_2:64259198-64259217 Msa0264350:intron 50.0%
GACCCGGAAATTCTGCTCCA+AGG + chr2_2:64257379-64257398 None:intergenic 55.0%
CTGTGGAGAAGACACTGACC+CGG + chr2_2:64257395-64257414 None:intergenic 55.0%
GTCAGTGTCTTCTCCACAGG+TGG - chr2_2:64257396-64257415 Msa0264350:three_prime_UTR 55.0%
GTCTTCTCCACAGGTGGATG+TGG - chr2_2:64257402-64257421 Msa0264350:three_prime_UTR 55.0%
!! AGCTACAAGGGCACTTGCAG+AGG - chr2_2:64257574-64257593 Msa0264350:three_prime_UTR 55.0%
GGCAGGGAAACCTCTAGATC+TGG - chr2_2:64258106-64258125 Msa0264350:intron 55.0%
ACGCTCACAGGAGCTATAGG+CGG - chr2_2:64258803-64258822 Msa0264350:intron 55.0%
! TTACCCAGTCTCTGGTGCCA+CGG + chr2_2:64258865-64258884 None:intergenic 55.0%
GAATGCCATGATCGGAGGTG+CGG - chr2_2:64259203-64259222 Msa0264350:intron 55.0%
GGCAATTGCAGCCCCTGTAA+TGG + chr2_2:64259289-64259308 None:intergenic 55.0%
AGTACCTCAGTAGCCTGGAG+AGG + chr2_2:64259644-64259663 None:intergenic 55.0%
ACTCAGTTACTCGACGGAGC+AGG + chr2_2:64259731-64259750 None:intergenic 55.0%
CGGGTCAGTGTCTTCTCCAC+AGG - chr2_2:64257393-64257412 Msa0264350:three_prime_UTR 60.0%
TACGGGGTAGAGAGGATCCG+TGG - chr2_2:64258845-64258864 Msa0264350:intron 60.0%
GATCCGTGGCACCAGAGACT+GGG - chr2_2:64258859-64258878 Msa0264350:intron 60.0%
TGTCACCGCACCTCCGATCA+TGG + chr2_2:64259211-64259230 None:intergenic 60.0%
! ATGATCGGAGGTGCGGTGAC+AGG - chr2_2:64259210-64259229 Msa0264350:intron 60.0%
! TGATCGGAGGTGCGGTGACA+GGG - chr2_2:64259211-64259230 Msa0264350:intron 60.0%
TCAGCCTCTCCAGGCTACTG+AGG - chr2_2:64259637-64259656 Msa0264350:CDS 60.0%
GGATCCGTGGCACCAGAGAC+TGG - chr2_2:64258858-64258877 Msa0264350:intron 65.0%
! GATCGGAGGTGCGGTGACAG+GGG - chr2_2:64259212-64259231 Msa0264350:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 64257207 64259829 64257207 ID=Msa0264350;Name=Msa0264350
chr2_2 mRNA 64257207 64259829 64257207 ID=Msa0264350-mRNA-1;Parent=Msa0264350;Name=Msa0264350-mRNA-1;_AED=0.35;_eAED=0.35;_QI=141|1|1|1|0.83|0.71|7|488|146
chr2_2 exon 64257207 64257835 64257207 ID=Msa0264350-mRNA-1:exon:20037;Parent=Msa0264350-mRNA-1
chr2_2 exon 64258156 64258223 64258156 ID=Msa0264350-mRNA-1:exon:20036;Parent=Msa0264350-mRNA-1
chr2_2 exon 64258314 64258347 64258314 ID=Msa0264350-mRNA-1:exon:20035;Parent=Msa0264350-mRNA-1
chr2_2 exon 64259164 64259195 64259164 ID=Msa0264350-mRNA-1:exon:20034;Parent=Msa0264350-mRNA-1
chr2_2 exon 64259416 64259467 64259416 ID=Msa0264350-mRNA-1:exon:20033;Parent=Msa0264350-mRNA-1
chr2_2 exon 64259550 64259743 64259550 ID=Msa0264350-mRNA-1:exon:20032;Parent=Msa0264350-mRNA-1
chr2_2 exon 64259769 64259829 64259769 ID=Msa0264350-mRNA-1:exon:20031;Parent=Msa0264350-mRNA-1
chr2_2 five_prime_UTR 64259769 64259829 64259769 ID=Msa0264350-mRNA-1:five_prime_utr;Parent=Msa0264350-mRNA-1
chr2_2 five_prime_UTR 64259664 64259743 64259664 ID=Msa0264350-mRNA-1:five_prime_utr;Parent=Msa0264350-mRNA-1
chr2_2 CDS 64259550 64259663 64259550 ID=Msa0264350-mRNA-1:cds;Parent=Msa0264350-mRNA-1
chr2_2 CDS 64259416 64259467 64259416 ID=Msa0264350-mRNA-1:cds;Parent=Msa0264350-mRNA-1
chr2_2 CDS 64259164 64259195 64259164 ID=Msa0264350-mRNA-1:cds;Parent=Msa0264350-mRNA-1
chr2_2 CDS 64258314 64258347 64258314 ID=Msa0264350-mRNA-1:cds;Parent=Msa0264350-mRNA-1
chr2_2 CDS 64258156 64258223 64258156 ID=Msa0264350-mRNA-1:cds;Parent=Msa0264350-mRNA-1
chr2_2 CDS 64257695 64257835 64257695 ID=Msa0264350-mRNA-1:cds;Parent=Msa0264350-mRNA-1
chr2_2 three_prime_UTR 64257207 64257694 64257207 ID=Msa0264350-mRNA-1:three_prime_utr;Parent=Msa0264350-mRNA-1
Gene Sequence

>Msa0264350

ATGCCTTGGAGCAGAATTTCCGGGTCAGTGTCTTCTCCACAGGTGGATGTGGTCATAGACATGGGAAATCCTTTCCTTAATCTAGCTGTTGATGGTTTCTTGAAGATTGGAACTGTTGCAGCTACAAGGGCACTTGCAGAGGATACCTTTCATATTGTCAGAAAGAGAAGTGTTTCAAGTAATGATTTTGAGAAAACTCTGAAGAAGATGTGCAAGGAAGGTGCATACTGGGGAGCTATAGGCGGCGTATATGTTGGAACAGAATACGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGAAGAATGCCATGATCGGAGGTGCGGTGACAGGGGCTCTAGTATCTGCAGCCAGCAACAACAAAAAAGACAAGATTGCAGTAGATGCCATTACAGGGGCTGCAATTGCCACTGCTGCAGAATTCATAAACCACTTTACCTGA

Protein sequence

>Msa0264350

MPWSRISGSVSSPQVDVVIDMGNPFLNLAVDGFLKIGTVAATRALAEDTFHIVRKRSVSSNDFEKTLKKMCKEGAYWGAIGGVYVGTEYGVERIRGTRDWKNAMIGGAVTGALVSAASNNKKDKIAVDAITGAAIATAAEFINHFT*