Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368100 | XP_003624633.1 | 99.113 | 451 | 3 | 1 | 1 | 450 | 1 | 451 | 0.0 | 931 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368100 | sp|P28752|TBA1_ORYSJ | 93.333 | 450 | 30 | 0 | 1 | 450 | 1 | 450 | 0.0 | 860 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368100 | A2Q5W0 | 99.113 | 451 | 3 | 1 | 1 | 450 | 1 | 451 | 0.0 | 931 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1118740 | Msa1368100 | 0.942862 | 3.380459e-102 | -8.615850e-47 |
| Msa1158690 | Msa1368100 | 0.999025 | 1.508116e-286 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368100 | MtrunA17_Chr7g0253411 | 99.113 | 451 | 3 | 1 | 1 | 450 | 1 | 451 | 0.0 | 931 |
| Msa1368100 | MtrunA17_Chr8g0378821 | 94.713 | 435 | 23 | 0 | 1 | 435 | 1 | 435 | 0.0 | 847 |
| Msa1368100 | MtrunA17_Chr1g0206881 | 89.778 | 450 | 46 | 0 | 1 | 450 | 1 | 450 | 0.0 | 831 |
| Msa1368100 | MtrunA17_Chr3g0140821 | 91.324 | 438 | 38 | 0 | 1 | 438 | 1 | 438 | 0.0 | 823 |
| Msa1368100 | MtrunA17_Chr4g0054511 | 90.888 | 439 | 40 | 0 | 1 | 439 | 1 | 439 | 0.0 | 822 |
| Msa1368100 | MtrunA17_Chr6g0461281 | 87.361 | 451 | 53 | 2 | 1 | 450 | 1 | 448 | 0.0 | 799 |
| Msa1368100 | MtrunA17_Chr2g0300491 | 68.282 | 454 | 133 | 3 | 1 | 448 | 1 | 449 | 0.0 | 622 |
| Msa1368100 | MtrunA17_Chr2g0300671 | 70.737 | 434 | 122 | 2 | 1 | 434 | 1 | 429 | 0.0 | 621 |
| Msa1368100 | MtrunA17_Chr4g0051631 | 41.244 | 434 | 245 | 3 | 1 | 434 | 1 | 424 | 5.14e-124 | 367 |
| Msa1368100 | MtrunA17_Chr4g0008361 | 41.475 | 434 | 244 | 3 | 1 | 434 | 1 | 424 | 2.22e-123 | 366 |
| Msa1368100 | MtrunA17_Chr4g0008401 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 3.82e-123 | 365 |
| Msa1368100 | MtrunA17_Chr7g0255791 | 40.553 | 434 | 248 | 3 | 1 | 434 | 1 | 424 | 1.33e-122 | 364 |
| Msa1368100 | MtrunA17_Chr2g0292921 | 40.553 | 434 | 248 | 2 | 1 | 434 | 1 | 424 | 1.39e-122 | 364 |
| Msa1368100 | MtrunA17_Chr4g0007371 | 40.596 | 436 | 247 | 3 | 1 | 434 | 1 | 426 | 2.41e-122 | 363 |
| Msa1368100 | MtrunA17_Chr1g0203181 | 40.553 | 434 | 248 | 2 | 1 | 434 | 1 | 424 | 2.41e-122 | 363 |
| Msa1368100 | MtrunA17_Chr8g0393021 | 40.222 | 450 | 257 | 3 | 1 | 450 | 1 | 438 | 2.64e-122 | 363 |
| Msa1368100 | MtrunA17_Chr3g0142731 | 39.401 | 434 | 255 | 1 | 1 | 434 | 1 | 426 | 2.87e-122 | 363 |
| Msa1368100 | MtrunA17_Chr8g0386781 | 38.902 | 437 | 251 | 3 | 1 | 434 | 1 | 424 | 3.27e-121 | 360 |
| Msa1368100 | MtrunA17_Chr3g0109241 | 87.681 | 138 | 17 | 0 | 268 | 405 | 1 | 138 | 9.10e-89 | 267 |
| Msa1368100 | MtrunA17_Chr7g0275431 | 31.461 | 445 | 284 | 8 | 2 | 433 | 3 | 439 | 2.79e-79 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368100 | AT5G19780.1 | 94.943 | 435 | 22 | 0 | 1 | 435 | 1 | 435 | 0.0 | 848 |
| Msa1368100 | AT5G19770.1 | 94.943 | 435 | 22 | 0 | 1 | 435 | 1 | 435 | 0.0 | 848 |
| Msa1368100 | AT1G64740.1 | 91.954 | 435 | 35 | 0 | 1 | 435 | 1 | 435 | 0.0 | 825 |
| Msa1368100 | AT1G50010.1 | 90.575 | 435 | 41 | 0 | 1 | 435 | 1 | 435 | 0.0 | 813 |
| Msa1368100 | AT1G04820.1 | 90.575 | 435 | 41 | 0 | 1 | 435 | 1 | 435 | 0.0 | 813 |
| Msa1368100 | AT4G14960.2 | 90.345 | 435 | 42 | 0 | 1 | 435 | 1 | 435 | 0.0 | 811 |
| Msa1368100 | AT4G14960.1 | 85.504 | 407 | 52 | 1 | 1 | 407 | 1 | 400 | 0.0 | 711 |
| Msa1368100 | AT1G75780.1 | 40.553 | 434 | 249 | 2 | 1 | 434 | 1 | 425 | 1.54e-125 | 372 |
| Msa1368100 | AT5G62690.1 | 40.783 | 434 | 247 | 2 | 1 | 434 | 1 | 424 | 1.19e-123 | 367 |
| Msa1368100 | AT5G62700.1 | 40.783 | 434 | 247 | 2 | 1 | 434 | 1 | 424 | 1.19e-123 | 367 |
| Msa1368100 | AT1G20010.1 | 40.323 | 434 | 250 | 2 | 1 | 434 | 1 | 425 | 1.71e-123 | 367 |
| Msa1368100 | AT5G12250.1 | 40.783 | 434 | 247 | 3 | 1 | 434 | 1 | 424 | 2.24e-123 | 366 |
| Msa1368100 | AT2G29550.1 | 40.553 | 434 | 248 | 2 | 1 | 434 | 1 | 424 | 1.19e-122 | 365 |
| Msa1368100 | AT4G20890.1 | 40.783 | 434 | 247 | 2 | 1 | 434 | 1 | 424 | 1.55e-122 | 364 |
| Msa1368100 | AT5G23860.2 | 40.553 | 434 | 248 | 2 | 1 | 434 | 1 | 424 | 3.02e-122 | 363 |
| Msa1368100 | AT5G23860.1 | 40.553 | 434 | 248 | 2 | 1 | 434 | 1 | 424 | 3.02e-122 | 363 |
| Msa1368100 | AT5G44340.1 | 40.783 | 434 | 247 | 4 | 1 | 434 | 1 | 424 | 7.98e-120 | 357 |
| Msa1368100 | AT5G05620.1 | 32.135 | 445 | 281 | 8 | 2 | 433 | 3 | 439 | 4.28e-80 | 256 |
| Msa1368100 | AT3G61650.1 | 31.685 | 445 | 283 | 8 | 2 | 433 | 3 | 439 | 6.10e-79 | 253 |
Find 113 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCCTGAGCAGTTAATTTC+TGG | 0.179011 | tig0018620:+3822 | Msa1368100:CDS |
| GAAAGGTTGTCTGTCGATTA+TGG | 0.254191 | tig0018620:+4108 | Msa1368100:CDS |
| CACTGATGTGGTTGTACTTT+TGG | 0.262817 | tig0018620:+4572 | Msa1368100:CDS |
| GGAGGTACAGGTTCTGGTTT+GGG | 0.273144 | tig0018620:+4072 | Msa1368100:CDS |
| TCTGCTCTGCCTGTTGTATC+TGG | 0.273590 | tig0018620:+5717 | Msa1368100:three_prime_UTR |
| TGCTAAGCTCTTCTATGTTT+TGG | 0.274209 | tig0018620:+5791 | Msa1368100:three_prime_UTR |
| TGGAGGTACAGGTTCTGGTT+TGG | 0.346982 | tig0018620:+4071 | Msa1368100:CDS |
| TGGTTTGGGATCGTTACTTT+TGG | 0.354669 | tig0018620:+4086 | Msa1368100:CDS |
| GCCTTTGCAGAGGATATTAC+AGG | 0.357050 | tig0018620:-4801 | None:intergenic |
| GTTGGTGGAGGTACAGGTTC+TGG | 0.360484 | tig0018620:+4066 | Msa1368100:CDS |
| AAGGGCCTTATTTGTTGATC+TGG | 0.363705 | tig0018620:+3749 | Msa1368100:CDS |
| CGGTTCCAGATCAACAAATA+AGG | 0.370493 | tig0018620:-3754 | None:intergenic |
| AATGCTGTTGGTGGAGGTAC+AGG | 0.403277 | tig0018620:+4060 | Msa1368100:CDS |
| TTGCCAGAAATTAACTGCTC+AGG | 0.405472 | tig0018620:-3825 | None:intergenic |
| ACAGCTGCATTTACATCTTT+AGG | 0.409495 | tig0018620:-4954 | None:intergenic |
| GATATGGAACCAGGTTAGTC+TGG | 0.415527 | tig0018620:-4746 | None:intergenic |
| GAGATAATAAGTATTCATAT+TGG | 0.417940 | tig0018620:+2689 | Msa1368100:CDS |
| ATGAAATGGATACGAGGATA+TGG | 0.420479 | tig0018620:-4762 | None:intergenic |
| TACCATCTATCCTTCTCCTC+AGG | 0.422942 | tig0018620:+4152 | Msa1368100:CDS |
| AACACCTTCTTCAGTGAGAC+TGG | 0.429484 | tig0018620:+3708 | Msa1368100:CDS |
| TGGTATCTTCTCCGCGCAAT+TGG | 0.449021 | tig0018620:+5822 | Msa1368100:three_prime_UTR |
| CACTTAGCCATCATACTTGA+CGG | 0.450335 | tig0018620:-4873 | None:intergenic |
| TTCTTCAGTGAGACTGGATC+TGG | 0.452584 | tig0018620:+3714 | Msa1368100:CDS |
| AAAACTGCGTTGGTGATCTC+AGG | 0.454547 | tig0018620:-4846 | None:intergenic |
| AGAAACTAATTCCTTGAGTT+GGG | 0.456285 | tig0018620:+5845 | Msa1368100:three_prime_UTR |
| GAGAAACTAATTCCTTGAGT+TGG | 0.457859 | tig0018620:+5844 | Msa1368100:three_prime_UTR |
| CATAAGACGAAAGCATGAAA+TGG | 0.468504 | tig0018620:-4776 | None:intergenic |
| AGTATTCATATTGGACAAGC+TGG | 0.473365 | tig0018620:+2698 | Msa1368100:CDS |
| TTGATCTCATGTATGCTAAG+AGG | 0.486229 | tig0018620:+5504 | Msa1368100:CDS |
| CTGGTACCACTGTTGGAGGC+TGG | 0.486551 | tig0018620:-5391 | None:intergenic |
| TCAAGTGGGGAATTCATGTT+GGG | 0.495335 | tig0018620:+2724 | Msa1368100:CDS |
| TTCAAGTGGGGAATTCATGT+TGG | 0.496744 | tig0018620:+2723 | Msa1368100:CDS |
| GATGATGAAGGAATGATGAT+AGG | 0.500017 | tig0018620:-5676 | None:intergenic |
| GTTATCGATGAAGTAAGAAC+TGG | 0.501415 | tig0018620:+3780 | Msa1368100:CDS |
| CATTGCAGTGATACCTCACC+TGG | 0.502593 | tig0018620:+3666 | Msa1368100:intron |
| CGGTTCAAGTTGGTATAAGT+TGG | 0.505038 | tig0018620:-4645 | None:intergenic |
| TACCTGAGGAGAAGGATAGA+TGG | 0.505051 | tig0018620:-4154 | None:intergenic |
| TACCTAGGCATCAATCCATC+AGG | 0.509994 | tig0018620:-2776 | None:intergenic |
| CTTCCTTGACAACTTCCTTG+AGG | 0.511080 | tig0018620:+4688 | Msa1368100:CDS |
| GCATTTGTACATTGGTATGT+TGG | 0.511829 | tig0018620:+5527 | Msa1368100:CDS |
| TCGCCTCCTGGTACCACTGT+TGG | 0.512189 | tig0018620:-5398 | None:intergenic |
| ATTACACAGCCAGATACAAC+AGG | 0.516662 | tig0018620:-5726 | None:intergenic |
| ACAACTTCCTTGAGGTTCGA+CGG | 0.518234 | tig0018620:+4696 | Msa1368100:CDS |
| GAACAGTTCAGTTTGTTGAC+TGG | 0.519065 | tig0018620:+4997 | Msa1368100:CDS |
| TCCCCTTGCAAAATTATTAG+CGG | 0.522098 | tig0018620:-3856 | None:intergenic |
| GACAATTGCACTGGATTGCA+AGG | 0.523031 | tig0018620:+4024 | Msa1368100:CDS |
| ATTCCACACTTGAAACCAGT+TGG | 0.524605 | tig0018620:-5362 | None:intergenic |
| CCTCCTGGTACCACTGTTGG+AGG | 0.526246 | tig0018620:-5395 | None:intergenic |
| CTAAGAGGGCATTTGTACAT+TGG | 0.526456 | tig0018620:+5519 | Msa1368100:CDS |
| AACCTGATGGATTGATGCCT+AGG | 0.533197 | tig0018620:+2774 | Msa1368100:CDS |
| GTGGAAAGAACACTGTTGTA+AGG | 0.534161 | tig0018620:-4531 | None:intergenic |
| AAAGCATCGTGTGCTACGCC+AGG | 0.534949 | tig0018620:-3684 | None:intergenic |
| TGATCTCATGTATGCTAAGA+GGG | 0.535385 | tig0018620:+5505 | Msa1368100:CDS |
| ACAGGAGGTGATGATGATGA+AGG | 0.536884 | tig0018620:-5688 | None:intergenic |
| AGATCCAGTCTCACTGAAGA+AGG | 0.536937 | tig0018620:-3712 | None:intergenic |
| GAGCTTTATTGTCTTGAGCA+TGG | 0.539665 | tig0018620:+2746 | Msa1368100:CDS |
| AGGCAGAGCAGAACAAAGAC+AGG | 0.539669 | tig0018620:-5706 | None:intergenic |
| AAATTAGCAGACAATTGCAC+TGG | 0.540742 | tig0018620:+4015 | Msa1368100:CDS |
| TGCCAGAAATTAACTGCTCA+GGG | 0.544963 | tig0018620:-3824 | None:intergenic |
| AATTGCGCGGAGAAGATACC+AGG | 0.545807 | tig0018620:-5820 | None:intergenic |
| CAGCCTCCAACAGTGGTACC+AGG | 0.546341 | tig0018620:+5392 | Msa1368100:CDS |
| AGAAATCAAACGGTTCAAGT+TGG | 0.546872 | tig0018620:-4655 | None:intergenic |
| TATGAAGAAGTTGGAGCTGA+AGG | 0.548058 | tig0018620:+5614 | Msa1368100:CDS |
| TCTTCTTGAGCACACTGATG+TGG | 0.548393 | tig0018620:+4560 | Msa1368100:CDS |
| AAGAGCAGCAAGATCCTCCC+TGG | 0.548874 | tig0018620:-5582 | None:intergenic |
| GTTGGAGCTGAAGGTGAAGC+TGG | 0.550120 | tig0018620:+5623 | Msa1368100:CDS |
| ATTCTTAATACCTGAGGAGA+AGG | 0.552200 | tig0018620:-4162 | None:intergenic |
| TCCTAGACACGGAAAGTACA+TGG | 0.554265 | tig0018620:+4899 | Msa1368100:CDS |
| AGATAACTTGAGAAATCAAA+CGG | 0.555063 | tig0018620:-4665 | None:intergenic |
| GATTGCACCGTCGAACCTCA+AGG | 0.556970 | tig0018620:-4703 | None:intergenic |
| CCTTTGCAGAGGATATTACA+GGG | 0.558058 | tig0018620:-4800 | None:intergenic |
| ACCTTCGCAAGATCGCCTCC+TGG | 0.558416 | tig0018620:-5410 | None:intergenic |
| TTGGTATGTTGGTGAAGGAA+TGG | 0.563208 | tig0018620:+5538 | Msa1368100:CDS |
| CAACAACACAGCTGTTTCCG+AGG | 0.568785 | tig0018620:+5457 | Msa1368100:CDS |
| TGAGCAGTTAATTTCTGGCA+AGG | 0.570785 | tig0018620:+3827 | Msa1368100:CDS |
| GCCATGTACTTTCCGTGTCT+AGG | 0.570873 | tig0018620:-4900 | None:intergenic |
| AGATCAACAAATAAGGCCCT+TGG | 0.576663 | tig0018620:-3747 | None:intergenic |
| CTTACTTCATCGATAACAGT+CGG | 0.579173 | tig0018620:-3774 | None:intergenic |
| TACTGAATTCCAGACTAACC+TGG | 0.579785 | tig0018620:+4737 | Msa1368100:CDS |
| CAGGAACTGATATCTGCTCA+TGG | 0.588381 | tig0018620:-4827 | None:intergenic |
| TGTCCAACTGGTTTCAAGTG+TGG | 0.589380 | tig0018620:+5359 | Msa1368100:CDS |
| GAGCATGGAATTCAACCTGA+TGG | 0.591414 | tig0018620:+2761 | Msa1368100:CDS |
| GTACATTGGTATGTTGGTGA+AGG | 0.591423 | tig0018620:+5533 | Msa1368100:CDS |
| GGACAAGCTGGAATTCAAGT+GGG | 0.593353 | tig0018620:+2710 | Msa1368100:CDS |
| GGATACGAGGATATGGAACC+AGG | 0.594253 | tig0018620:-4755 | None:intergenic |
| GTGCTCAAGAAGAGAATGAG+TGG | 0.604916 | tig0018620:-4550 | None:intergenic |
| TTTGCAAGGGGACACTACAC+CGG | 0.607003 | tig0018620:+3867 | Msa1368100:CDS |
| ACACAATACTACCCAACTCA+AGG | 0.608631 | tig0018620:-5856 | None:intergenic |
| ATCTGGCAAGCATGTACCAA+GGG | 0.610864 | tig0018620:+3731 | Msa1368100:CDS |
| CCCTGTAATATCCTCTGCAA+AGG | 0.611099 | tig0018620:+4800 | Msa1368100:CDS |
| ACCAGGAGGCGATCTTGCGA+AGG | 0.611647 | tig0018620:+5409 | Msa1368100:CDS |
| TGGACAAGCTGGAATTCAAG+TGG | 0.612580 | tig0018620:+2709 | Msa1368100:CDS |
| GAACCTCAAGGAAGTTGTCA+AGG | 0.614211 | tig0018620:-4691 | None:intergenic |
| CAACTACCAGCCTCCAACAG+TGG | 0.617772 | tig0018620:+5385 | Msa1368100:CDS |
| GTTGGTGAAGGAATGGAAGA+AGG | 0.620831 | tig0018620:+5545 | Msa1368100:CDS |
| CAGAGCAGAACAAAGACAGG+AGG | 0.630707 | tig0018620:-5703 | None:intergenic |
| AATTAGTTTCTCCAATTGCG+CGG | 0.631786 | tig0018620:-5833 | None:intergenic |
| ATCGTGTGCTACGCCAGGTG+AGG | 0.633117 | tig0018620:-3679 | None:intergenic |
| AACTGATATCTGCTCATGGT+AGG | 0.635921 | tig0018620:-4823 | None:intergenic |
| CAAGGAGGAAGAAACTGCAA+AGG | 0.646845 | tig0018620:-2633 | None:intergenic |
| TGCTGCAAATGAAAATCACA+AGG | 0.653931 | tig0018620:-2651 | None:intergenic |
| CAACATCTCCGCGATACATG+AGG | 0.654917 | tig0018620:-4929 | None:intergenic |
| GACAAGCTGGAATTCAAGTG+GGG | 0.670284 | tig0018620:+2711 | Msa1368100:CDS |
| GATCTGGCAAGCATGTACCA+AGG | 0.671782 | tig0018620:+3730 | Msa1368100:CDS |
| CTCATGGTAGGCCTTTGCAG+AGG | 0.677206 | tig0018620:-4811 | None:intergenic |
| GCATGCTGCCTCATGTATCG+CGG | 0.677664 | tig0018620:+4921 | Msa1368100:CDS |
| ATCAATGCGAGAGAAAACCT+CGG | 0.683525 | tig0018620:-5474 | None:intergenic |
| CTTTGCAGAGGATATTACAG+GGG | 0.699325 | tig0018620:-4799 | None:intergenic |
| CCTCCAACAGTGGTACCAGG+AGG | 0.717379 | tig0018620:+5395 | Msa1368100:CDS |
| GTTCGACGGTGCAATCAACG+TGG | 0.720350 | tig0018620:+4710 | Msa1368100:CDS |
| GAAAGCATGAAATGGATACG+AGG | 0.722207 | tig0018620:-4768 | None:intergenic |
| GCTAAGTGTGATCCTAGACA+CGG | 0.723184 | tig0018620:+4888 | Msa1368100:CDS |
| TGCAAATGAAAATCACAAGG+AGG | 0.735187 | tig0018620:-2648 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGGAAATATATAAAATTTT+AGG | - | tig0018620:3006-3025 | None:intergenic | 10.0% |
| !! | TATATATCCAAATTAAAAAT+GGG | - | tig0018620:3226-3245 | None:intergenic | 10.0% |
| !! | TTATATATCCAAATTAAAAA+TGG | - | tig0018620:3227-3246 | None:intergenic | 10.0% |
| !!! | TTTTAATTTGGATATATAAA+AGG | + | tig0018620:3228-3247 | Msa1368100:intron | 10.0% |
| !! | AAATCCTAATATATATTATT+CGG | - | tig0018620:4454-4473 | None:intergenic | 10.0% |
| !! | TAATCCGAATAATATATATT+AGG | + | tig0018620:4447-4466 | Msa1368100:intron | 15.0% |
| !! | AAAAATCATTAGATATAGAA+AGG | + | tig0018620:4622-4641 | Msa1368100:CDS | 15.0% |
| !! | GAGATAATAAGTATTCATAT+TGG | + | tig0018620:2689-2708 | Msa1368100:CDS | 20.0% |
| !! | TCATAAATAGTTGACATATA+TGG | + | tig0018620:3176-3195 | Msa1368100:intron | 20.0% |
| !! | GTTGATCTTAAATTAGTATA+AGG | + | tig0018620:3198-3217 | Msa1368100:intron | 20.0% |
| !! | ATATATATTATGTAGACCAA+GGG | + | tig0018620:3272-3291 | Msa1368100:intron | 20.0% |
| !! | TGAGTTAACAAGTTTAATAA+TGG | - | tig0018620:3449-3468 | None:intergenic | 20.0% |
| !!! | ATTAAACTTGTTAACTCAAA+TGG | + | tig0018620:3451-3470 | Msa1368100:intron | 20.0% |
| !!! | TGGAATTTTTAACTCATATA+TGG | + | tig0018620:3603-3622 | Msa1368100:intron | 20.0% |
| !! | AATGTAACAAATAACAAAGT+AGG | - | tig0018620:4228-4247 | None:intergenic | 20.0% |
| !!! | AACAATACCTTTTAATATGT+AGG | + | tig0018620:4488-4507 | Msa1368100:intron | 20.0% |
| !!! | TATAATTGCTTTATTCTCAT+AGG | + | tig0018620:5218-5237 | Msa1368100:intron | 20.0% |
| !!! | ATAATTGCTTTATTCTCATA+GGG | + | tig0018620:5219-5238 | Msa1368100:intron | 20.0% |
| !!! | CAAACTGTTTTTTTAGTAAA+AGG | - | tig0018620:5310-5329 | None:intergenic | 20.0% |
| !! | AGAAACATTCTTAAAAATAG+TGG | - | tig0018620:5765-5784 | None:intergenic | 20.0% |
| !! | TCATATAAAAAAGTGTACCT+AGG | - | tig0018620:2794-2813 | None:intergenic | 25.0% |
| ! | CTTGTTTACATTAATTGTAG+TGG | + | tig0018620:2833-2852 | Msa1368100:intron | 25.0% |
| ! | AAAAATAGAAAAAACCCAGA+AGG | - | tig0018620:3035-3054 | None:intergenic | 25.0% |
| !!! | TTCTGGGTTTTTTCTATTTT+TGG | + | tig0018620:3034-3053 | Msa1368100:intron | 25.0% |
| !!! | ATTTTTGGTGTTTTCATTTG+TGG | + | tig0018620:3049-3068 | Msa1368100:intron | 25.0% |
| !!! | TTTTTGGTGTTTTCATTTGT+GGG | + | tig0018620:3050-3069 | Msa1368100:intron | 25.0% |
| !!! | CTATTTTTGCATGATAAGAA+TGG | - | tig0018620:3155-3174 | None:intergenic | 25.0% |
| !!! | TAAGGATCCCATTTTTAATT+TGG | + | tig0018620:3216-3235 | Msa1368100:intron | 25.0% |
| ! | GATATATATTATGTAGACCA+AGG | + | tig0018620:3271-3290 | Msa1368100:intron | 25.0% |
| !!! | ATGTTTCTAGTTTTCCAATT+TGG | - | tig0018620:3368-3387 | None:intergenic | 25.0% |
| ! | CAAATGGTTGATTAATGATT+AGG | + | tig0018620:3467-3486 | Msa1368100:intron | 25.0% |
| !!! | ATGATTGATTTTCTTGAGTT+TGG | + | tig0018620:3545-3564 | Msa1368100:intron | 25.0% |
| !!! | TTTGGACTTTTTAACTCATA+AGG | + | tig0018620:3526-3545 | Msa1368100:intron | 25.0% |
| !!! | AGGTTGATTTGTTTTATGTT+TGG | + | tig0018620:3583-3602 | Msa1368100:intron | 25.0% |
| ! | CATAGAATCACAAATATAAC+AGG | - | tig0018620:4350-4369 | None:intergenic | 25.0% |
| ! | GTAGATACCTACATATTAAA+AGG | - | tig0018620:4498-4517 | None:intergenic | 25.0% |
| ! | AGATAACTTGAGAAATCAAA+CGG | - | tig0018620:4668-4687 | None:intergenic | 25.0% |
| ! | TTCCTTGAAATATCACATTA+TGG | + | tig0018620:5035-5054 | Msa1368100:intron | 25.0% |
| ! | AACCATAATGTGATATTTCA+AGG | - | tig0018620:5040-5059 | None:intergenic | 25.0% |
| !! | TAATTGCTTTATTCTCATAG+GGG | + | tig0018620:5220-5239 | Msa1368100:intron | 25.0% |
| !!! | ACTGTTTTTTTAGTAAAAGG+CGG | - | tig0018620:5307-5326 | None:intergenic | 25.0% |
| !! | ACATTCTTAAAAATAGTGGA+GGG | - | tig0018620:5761-5780 | None:intergenic | 25.0% |
| ! | AACATTCTTAAAAATAGTGG+AGG | - | tig0018620:5762-5781 | None:intergenic | 25.0% |
| ! | ATGATGAAAAAAAATGGTCT+CGG | - | tig0018620:5920-5939 | None:intergenic | 25.0% |
| TATTTCCTAATAGTTCCTTC+TGG | + | tig0018620:3017-3036 | Msa1368100:intron | 30.0% | |
| ATTTCCTAATAGTTCCTTCT+GGG | + | tig0018620:3018-3037 | Msa1368100:intron | 30.0% | |
| ! | TTTTTGCATGATAAGAATGG+AGG | - | tig0018620:3152-3171 | None:intergenic | 30.0% |
| CTAGAAACATCTCTTCAATT+TGG | + | tig0018620:3378-3397 | Msa1368100:intron | 30.0% | |
| TAACTCATATATGGTTGATC+AGG | + | tig0018620:3612-3631 | Msa1368100:intron | 30.0% | |
| !!! | TTCACTTTTTAACTTGACAG+CGG | + | tig0018620:3928-3947 | Msa1368100:intron | 30.0% |
| ! | TGTCTGCTAATTTTCTGATA+CGG | - | tig0018620:4008-4027 | None:intergenic | 30.0% |
| !!! | TTCTTTGTTTTCAATGCTGT+TGG | + | tig0018620:4048-4067 | Msa1368100:CDS | 30.0% |
| TATGGCAAAAAGTCTAAACT+TGG | + | tig0018620:4126-4145 | Msa1368100:CDS | 30.0% | |
| CTGTATGCGTTAATAAATAG+AGG | - | tig0018620:4395-4414 | None:intergenic | 30.0% | |
| !! | TCTAGATAGTTTAACTTGCA+AGG | - | tig0018620:5088-5107 | None:intergenic | 30.0% |
| ! | AGTGCTGAAATTATGCAATT+TGG | + | tig0018620:5116-5135 | Msa1368100:intron | 30.0% |
| !! | TGATATTGGTGACTATTTTC+AGG | + | tig0018620:5336-5355 | Msa1368100:intron | 30.0% |
| ! | AATGGAAGAAGGTGAATTTT+CGG | + | tig0018620:5556-5575 | Msa1368100:CDS | 30.0% |
| GAAAAAGACTATGAAGAAGT+TGG | + | tig0018620:5605-5624 | Msa1368100:CDS | 30.0% | |
| ! | CATTCTTAAAAATAGTGGAG+GGG | - | tig0018620:5760-5779 | None:intergenic | 30.0% |
| AGAAACTAATTCCTTGAGTT+GGG | + | tig0018620:5845-5864 | Msa1368100:three_prime_UTR | 30.0% | |
| TGCAAATGAAAATCACAAGG+AGG | - | tig0018620:2651-2670 | None:intergenic | 35.0% | |
| TGCTGCAAATGAAAATCACA+AGG | - | tig0018620:2654-2673 | None:intergenic | 35.0% | |
| AGTATTCATATTGGACAAGC+TGG | + | tig0018620:2698-2717 | Msa1368100:CDS | 35.0% | |
| AAAACCCAGAAGGAACTATT+AGG | - | tig0018620:3025-3044 | None:intergenic | 35.0% | |
| CCAATTTGGCAATTCTCTAT+TGG | - | tig0018620:3354-3373 | None:intergenic | 35.0% | |
| CCAATAGAGAATTGCCAAAT+TGG | + | tig0018620:3351-3370 | Msa1368100:intron | 35.0% | |
| !!! | ATGCTGCTTTTCTTGATGTT+TGG | + | tig0018620:3508-3527 | Msa1368100:intron | 35.0% |
| CTTACTTCATCGATAACAGT+CGG | - | tig0018620:3777-3796 | None:intergenic | 35.0% | |
| GTTATCGATGAAGTAAGAAC+TGG | + | tig0018620:3780-3799 | Msa1368100:CDS | 35.0% | |
| ! | ATGCCGCTAATAATTTTGCA+AGG | + | tig0018620:3853-3872 | Msa1368100:CDS | 35.0% |
| ! | TGCCGCTAATAATTTTGCAA+GGG | + | tig0018620:3854-3873 | Msa1368100:CDS | 35.0% |
| TCCCCTTGCAAAATTATTAG+CGG | - | tig0018620:3859-3878 | None:intergenic | 35.0% | |
| AAATTAGCAGACAATTGCAC+TGG | + | tig0018620:4015-4034 | Msa1368100:CDS | 35.0% | |
| !! | TTTGTTTTCAATGCTGTTGG+TGG | + | tig0018620:4051-4070 | Msa1368100:CDS | 35.0% |
| ATTCTTAATACCTGAGGAGA+AGG | - | tig0018620:4165-4184 | None:intergenic | 35.0% | |
| GTCTTCATTCTTAATACCTG+AGG | - | tig0018620:4171-4190 | None:intergenic | 35.0% | |
| ATCTGTTCCACTCATTCATA+TGG | + | tig0018620:4309-4328 | Msa1368100:intron | 35.0% | |
| CCATAAACCATATGAATGAG+TGG | - | tig0018620:4319-4338 | None:intergenic | 35.0% | |
| CCACTCATTCATATGGTTTA+TGG | + | tig0018620:4316-4335 | Msa1368100:intron | 35.0% | |
| AGAAATCAAACGGTTCAAGT+TGG | - | tig0018620:4658-4677 | None:intergenic | 35.0% | |
| ATGAAATGGATACGAGGATA+TGG | - | tig0018620:4765-4784 | None:intergenic | 35.0% | |
| ! | CATAAGACGAAAGCATGAAA+TGG | - | tig0018620:4779-4798 | None:intergenic | 35.0% |
| ACAGCTGCATTTACATCTTT+AGG | - | tig0018620:4957-4976 | None:intergenic | 35.0% | |
| TTTAGTAAAAGGCGGAAGAA+TGG | - | tig0018620:5299-5318 | None:intergenic | 35.0% | |
| ACAGTTTGACTGAGTGATAT+TGG | + | tig0018620:5322-5341 | Msa1368100:intron | 35.0% | |
| TTGATCTCATGTATGCTAAG+AGG | + | tig0018620:5504-5523 | Msa1368100:CDS | 35.0% | |
| TGATCTCATGTATGCTAAGA+GGG | + | tig0018620:5505-5524 | Msa1368100:CDS | 35.0% | |
| GCATTTGTACATTGGTATGT+TGG | + | tig0018620:5527-5546 | Msa1368100:CDS | 35.0% | |
| GATGATGAAGGAATGATGAT+AGG | - | tig0018620:5679-5698 | None:intergenic | 35.0% | |
| ! | TGCTAAGCTCTTCTATGTTT+TGG | + | tig0018620:5791-5810 | Msa1368100:three_prime_UTR | 35.0% |
| !!! | TCTATGTTTTGGTGTAAACC+TGG | + | tig0018620:5802-5821 | Msa1368100:three_prime_UTR | 35.0% |
| ! | AATTAGTTTCTCCAATTGCG+CGG | - | tig0018620:5836-5855 | None:intergenic | 35.0% |
| GAGAAACTAATTCCTTGAGT+TGG | + | tig0018620:5844-5863 | Msa1368100:three_prime_UTR | 35.0% | |
| TTCAAGTGGGGAATTCATGT+TGG | + | tig0018620:2723-2742 | Msa1368100:CDS | 40.0% | |
| TCAAGTGGGGAATTCATGTT+GGG | + | tig0018620:2724-2743 | Msa1368100:CDS | 40.0% | |
| !! | GAGCTTTATTGTCTTGAGCA+TGG | + | tig0018620:2746-2765 | Msa1368100:CDS | 40.0% |
| !! | GTGGGTCTTTTGAAAGCTTT+TGG | + | tig0018620:3068-3087 | Msa1368100:intron | 40.0% |
| CCTTGAAGAATTGAATCCCT+TGG | - | tig0018620:3291-3310 | None:intergenic | 40.0% | |
| CCAAGGGATTCAATTCTTCA+AGG | + | tig0018620:3288-3307 | Msa1368100:intron | 40.0% | |
| AGGATACTGCTTGTAATGAG+TGG | + | tig0018620:3308-3327 | Msa1368100:intron | 40.0% | |
| AGATCAACAAATAAGGCCCT+TGG | - | tig0018620:3750-3769 | None:intergenic | 40.0% | |
| !! | AAGGGCCTTATTTGTTGATC+TGG | + | tig0018620:3749-3768 | Msa1368100:CDS | 40.0% |
| CGGTTCCAGATCAACAAATA+AGG | - | tig0018620:3757-3776 | None:intergenic | 40.0% | |
| TGCCAGAAATTAACTGCTCA+GGG | - | tig0018620:3827-3846 | None:intergenic | 40.0% | |
| TTGCCAGAAATTAACTGCTC+AGG | - | tig0018620:3828-3847 | None:intergenic | 40.0% | |
| !! | TGAGCAGTTAATTTCTGGCA+AGG | + | tig0018620:3827-3846 | Msa1368100:CDS | 40.0% |
| ! | GCCGCTAATAATTTTGCAAG+GGG | + | tig0018620:3855-3874 | Msa1368100:CDS | 40.0% |
| TGCGTTAGAAATTGCCTTAC+CGG | - | tig0018620:3889-3908 | None:intergenic | 40.0% | |
| ! | CTAATTTTCTGATACGGTCG+AGG | - | tig0018620:4002-4021 | None:intergenic | 40.0% |
| !! | TGGTTTGGGATCGTTACTTT+TGG | + | tig0018620:4086-4105 | Msa1368100:CDS | 40.0% |
| !!! | TGGGATCGTTACTTTTGGAA+AGG | + | tig0018620:4091-4110 | Msa1368100:CDS | 40.0% |
| ! | GAAAGGTTGTCTGTCGATTA+TGG | + | tig0018620:4108-4127 | Msa1368100:CDS | 40.0% |
| GTGGAAAGAACACTGTTGTA+AGG | - | tig0018620:4534-4553 | None:intergenic | 40.0% | |
| ! | CACTGATGTGGTTGTACTTT+TGG | + | tig0018620:4572-4591 | Msa1368100:CDS | 40.0% |
| !! | CGGTTCAAGTTGGTATAAGT+TGG | - | tig0018620:4648-4667 | None:intergenic | 40.0% |
| TACTGAATTCCAGACTAACC+TGG | + | tig0018620:4737-4756 | Msa1368100:CDS | 40.0% | |
| ! | GAAAGCATGAAATGGATACG+AGG | - | tig0018620:4771-4790 | None:intergenic | 40.0% |
| CTTTGCAGAGGATATTACAG+GGG | - | tig0018620:4802-4821 | None:intergenic | 40.0% | |
| CCTTTGCAGAGGATATTACA+GGG | - | tig0018620:4803-4822 | None:intergenic | 40.0% | |
| AACTGATATCTGCTCATGGT+AGG | - | tig0018620:4826-4845 | None:intergenic | 40.0% | |
| ! | TTTTGAGCCGTCAAGTATGA+TGG | + | tig0018620:4866-4885 | Msa1368100:CDS | 40.0% |
| CACTTAGCCATCATACTTGA+CGG | - | tig0018620:4876-4895 | None:intergenic | 40.0% | |
| !! | GAACAGTTCAGTTTGTTGAC+TGG | + | tig0018620:4997-5016 | Msa1368100:CDS | 40.0% |
| !!! | ACTATTTTCAGGTGTCCAAC+TGG | + | tig0018620:5347-5366 | Msa1368100:intron | 40.0% |
| ATTCCACACTTGAAACCAGT+TGG | - | tig0018620:5365-5384 | None:intergenic | 40.0% | |
| ATCAATGCGAGAGAAAACCT+CGG | - | tig0018620:5477-5496 | None:intergenic | 40.0% | |
| !! | CTAAGAGGGCATTTGTACAT+TGG | + | tig0018620:5519-5538 | Msa1368100:CDS | 40.0% |
| ! | GTACATTGGTATGTTGGTGA+AGG | + | tig0018620:5533-5552 | Msa1368100:CDS | 40.0% |
| ! | TTGGTATGTTGGTGAAGGAA+TGG | + | tig0018620:5538-5557 | Msa1368100:CDS | 40.0% |
| TATGAAGAAGTTGGAGCTGA+AGG | + | tig0018620:5614-5633 | Msa1368100:CDS | 40.0% | |
| ATTACACAGCCAGATACAAC+AGG | - | tig0018620:5729-5748 | None:intergenic | 40.0% | |
| ACACAATACTACCCAACTCA+AGG | - | tig0018620:5859-5878 | None:intergenic | 40.0% | |
| CAAGGAGGAAGAAACTGCAA+AGG | - | tig0018620:2636-2655 | None:intergenic | 45.0% | |
| TGGACAAGCTGGAATTCAAG+TGG | + | tig0018620:2709-2728 | Msa1368100:CDS | 45.0% | |
| GGACAAGCTGGAATTCAAGT+GGG | + | tig0018620:2710-2729 | Msa1368100:CDS | 45.0% | |
| GACAAGCTGGAATTCAAGTG+GGG | + | tig0018620:2711-2730 | Msa1368100:CDS | 45.0% | |
| GAGCATGGAATTCAACCTGA+TGG | + | tig0018620:2761-2780 | Msa1368100:CDS | 45.0% | |
| !! | AACCTGATGGATTGATGCCT+AGG | + | tig0018620:2774-2793 | Msa1368100:CDS | 45.0% |
| TACCTAGGCATCAATCCATC+AGG | - | tig0018620:2779-2798 | None:intergenic | 45.0% | |
| AACACCTTCTTCAGTGAGAC+TGG | + | tig0018620:3708-3727 | Msa1368100:CDS | 45.0% | |
| AGATCCAGTCTCACTGAAGA+AGG | - | tig0018620:3715-3734 | None:intergenic | 45.0% | |
| TTCTTCAGTGAGACTGGATC+TGG | + | tig0018620:3714-3733 | Msa1368100:CDS | 45.0% | |
| ATCTGGCAAGCATGTACCAA+GGG | + | tig0018620:3731-3750 | Msa1368100:CDS | 45.0% | |
| CACCCTGAGCAGTTAATTTC+TGG | + | tig0018620:3822-3841 | Msa1368100:CDS | 45.0% | |
| CTGCAGCACAGATACACAAA+TGG | - | tig0018620:3954-3973 | None:intergenic | 45.0% | |
| TTGTGTATCTGTGCTGCAGT+TGG | + | tig0018620:3955-3974 | Msa1368100:intron | 45.0% | |
| GACAATTGCACTGGATTGCA+AGG | + | tig0018620:4024-4043 | Msa1368100:CDS | 45.0% | |
| !! | GTTTTCAATGCTGTTGGTGG+AGG | + | tig0018620:4054-4073 | Msa1368100:CDS | 45.0% |
| TACCATCTATCCTTCTCCTC+AGG | + | tig0018620:4152-4171 | Msa1368100:CDS | 45.0% | |
| TACCTGAGGAGAAGGATAGA+TGG | - | tig0018620:4157-4176 | None:intergenic | 45.0% | |
| GTGCTCAAGAAGAGAATGAG+TGG | - | tig0018620:4553-4572 | None:intergenic | 45.0% | |
| TCTTCTTGAGCACACTGATG+TGG | + | tig0018620:4560-4579 | Msa1368100:CDS | 45.0% | |
| CTTCCTTGACAACTTCCTTG+AGG | + | tig0018620:4688-4707 | Msa1368100:CDS | 45.0% | |
| GAACCTCAAGGAAGTTGTCA+AGG | - | tig0018620:4694-4713 | None:intergenic | 45.0% | |
| ACAACTTCCTTGAGGTTCGA+CGG | + | tig0018620:4696-4715 | Msa1368100:CDS | 45.0% | |
| ! | GATATGGAACCAGGTTAGTC+TGG | - | tig0018620:4749-4768 | None:intergenic | 45.0% |
| CCCTGTAATATCCTCTGCAA+AGG | + | tig0018620:4800-4819 | Msa1368100:CDS | 45.0% | |
| GCCTTTGCAGAGGATATTAC+AGG | - | tig0018620:4804-4823 | None:intergenic | 45.0% | |
| CAGGAACTGATATCTGCTCA+TGG | - | tig0018620:4830-4849 | None:intergenic | 45.0% | |
| !! | AAAACTGCGTTGGTGATCTC+AGG | - | tig0018620:4849-4868 | None:intergenic | 45.0% |
| GCTAAGTGTGATCCTAGACA+CGG | + | tig0018620:4888-4907 | Msa1368100:CDS | 45.0% | |
| ! | TCCTAGACACGGAAAGTACA+TGG | + | tig0018620:4899-4918 | Msa1368100:CDS | 45.0% |
| ! | TGTCCAACTGGTTTCAAGTG+TGG | + | tig0018620:5359-5378 | Msa1368100:CDS | 45.0% |
| ! | GTTGGTGAAGGAATGGAAGA+AGG | + | tig0018620:5545-5564 | Msa1368100:CDS | 45.0% |
| ! | AAGGTGAATTTTCGGAAGCC+AGG | + | tig0018620:5564-5583 | Msa1368100:CDS | 45.0% |
| ! | AGGTGAATTTTCGGAAGCCA+GGG | + | tig0018620:5565-5584 | Msa1368100:CDS | 45.0% |
| ! | ACAGGAGGTGATGATGATGA+AGG | - | tig0018620:5691-5710 | None:intergenic | 45.0% |
| CATTGCAGTGATACCTCACC+TGG | + | tig0018620:3666-3685 | Msa1368100:intron | 50.0% | |
| GATCTGGCAAGCATGTACCA+AGG | + | tig0018620:3730-3749 | Msa1368100:CDS | 50.0% | |
| TTTGCAAGGGGACACTACAC+CGG | + | tig0018620:3867-3886 | Msa1368100:CDS | 50.0% | |
| ! | AATGCTGTTGGTGGAGGTAC+AGG | + | tig0018620:4060-4079 | Msa1368100:CDS | 50.0% |
| ! | TGGAGGTACAGGTTCTGGTT+TGG | + | tig0018620:4071-4090 | Msa1368100:CDS | 50.0% |
| !! | GGAGGTACAGGTTCTGGTTT+GGG | + | tig0018620:4072-4091 | Msa1368100:CDS | 50.0% |
| GGATACGAGGATATGGAACC+AGG | - | tig0018620:4758-4777 | None:intergenic | 50.0% | |
| TGACGGCTCAAAAACTGCGT+TGG | - | tig0018620:4859-4878 | None:intergenic | 50.0% | |
| GCCATGTACTTTCCGTGTCT+AGG | - | tig0018620:4903-4922 | None:intergenic | 50.0% | |
| CAACATCTCCGCGATACATG+AGG | - | tig0018620:4932-4951 | None:intergenic | 50.0% | |
| TTCGCTTTGCGCTCATCACA+CGG | - | tig0018620:5276-5295 | None:intergenic | 50.0% | |
| ! | CAACAACACAGCTGTTTCCG+AGG | + | tig0018620:5457-5476 | Msa1368100:CDS | 50.0% |
| ! | TGAATTTTCGGAAGCCAGGG+AGG | + | tig0018620:5568-5587 | Msa1368100:CDS | 50.0% |
| CAGAGCAGAACAAAGACAGG+AGG | - | tig0018620:5706-5725 | None:intergenic | 50.0% | |
| AGGCAGAGCAGAACAAAGAC+AGG | - | tig0018620:5709-5728 | None:intergenic | 50.0% | |
| TCTGCTCTGCCTGTTGTATC+TGG | + | tig0018620:5717-5736 | Msa1368100:three_prime_UTR | 50.0% | |
| AATTGCGCGGAGAAGATACC+AGG | - | tig0018620:5823-5842 | None:intergenic | 50.0% | |
| TGGTATCTTCTCCGCGCAAT+TGG | + | tig0018620:5822-5841 | Msa1368100:three_prime_UTR | 50.0% | |
| !! | AAAGCATCGTGTGCTACGCC+AGG | - | tig0018620:3687-3706 | None:intergenic | 55.0% |
| AAGGGGACACTACACCGGTA+AGG | + | tig0018620:3872-3891 | Msa1368100:intron | 55.0% | |
| ! | GTTGGTGGAGGTACAGGTTC+TGG | + | tig0018620:4066-4085 | Msa1368100:CDS | 55.0% |
| GATTGCACCGTCGAACCTCA+AGG | - | tig0018620:4706-4725 | None:intergenic | 55.0% | |
| GTTCGACGGTGCAATCAACG+TGG | + | tig0018620:4710-4729 | Msa1368100:CDS | 55.0% | |
| CTCATGGTAGGCCTTTGCAG+AGG | - | tig0018620:4814-4833 | None:intergenic | 55.0% | |
| GCATGCTGCCTCATGTATCG+CGG | + | tig0018620:4921-4940 | Msa1368100:CDS | 55.0% | |
| CAACTACCAGCCTCCAACAG+TGG | + | tig0018620:5385-5404 | Msa1368100:CDS | 55.0% | |
| AAGAGCAGCAAGATCCTCCC+TGG | - | tig0018620:5585-5604 | None:intergenic | 55.0% | |
| GTTGGAGCTGAAGGTGAAGC+TGG | + | tig0018620:5623-5642 | Msa1368100:CDS | 55.0% | |
| ATCGTGTGCTACGCCAGGTG+AGG | - | tig0018620:3682-3701 | None:intergenic | 60.0% | |
| CTGGTACCACTGTTGGAGGC+TGG | - | tig0018620:5394-5413 | None:intergenic | 60.0% | |
| CAGCCTCCAACAGTGGTACC+AGG | + | tig0018620:5392-5411 | Msa1368100:CDS | 60.0% | |
| CCTCCTGGTACCACTGTTGG+AGG | - | tig0018620:5398-5417 | None:intergenic | 60.0% | |
| CCTCCAACAGTGGTACCAGG+AGG | + | tig0018620:5395-5414 | Msa1368100:CDS | 60.0% | |
| TCGCCTCCTGGTACCACTGT+TGG | - | tig0018620:5401-5420 | None:intergenic | 60.0% | |
| ACCAGGAGGCGATCTTGCGA+AGG | + | tig0018620:5409-5428 | Msa1368100:CDS | 60.0% | |
| ACCTTCGCAAGATCGCCTCC+TGG | - | tig0018620:5413-5432 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018620 | gene | 2607 | 5942 | 2607 | ID=Msa1368100;Name=Msa1368100 |
| tig0018620 | mRNA | 2607 | 5942 | 2607 | ID=Msa1368100-mRNA-1;Parent=Msa1368100;Name=Msa1368100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=76|1|1|1|1|1|5|269|450 |
| tig0018620 | exon | 2607 | 2795 | 2607 | ID=Msa1368100-mRNA-1:exon:317;Parent=Msa1368100-mRNA-1 |
| tig0018620 | exon | 3674 | 3888 | 3674 | ID=Msa1368100-mRNA-1:exon:318;Parent=Msa1368100-mRNA-1 |
| tig0018620 | exon | 3974 | 4173 | 3974 | ID=Msa1368100-mRNA-1:exon:319;Parent=Msa1368100-mRNA-1 |
| tig0018620 | exon | 4510 | 5018 | 4510 | ID=Msa1368100-mRNA-1:exon:320;Parent=Msa1368100-mRNA-1 |
| tig0018620 | exon | 5358 | 5942 | 5358 | ID=Msa1368100-mRNA-1:exon:321;Parent=Msa1368100-mRNA-1 |
| tig0018620 | five_prime_UTR | 2607 | 2682 | 2607 | ID=Msa1368100-mRNA-1:five_prime_utr;Parent=Msa1368100-mRNA-1 |
| tig0018620 | CDS | 2683 | 2795 | 2683 | ID=Msa1368100-mRNA-1:cds;Parent=Msa1368100-mRNA-1 |
| tig0018620 | CDS | 3674 | 3888 | 3674 | ID=Msa1368100-mRNA-1:cds;Parent=Msa1368100-mRNA-1 |
| tig0018620 | CDS | 3974 | 4173 | 3974 | ID=Msa1368100-mRNA-1:cds;Parent=Msa1368100-mRNA-1 |
| tig0018620 | CDS | 4510 | 5018 | 4510 | ID=Msa1368100-mRNA-1:cds;Parent=Msa1368100-mRNA-1 |
| tig0018620 | CDS | 5358 | 5673 | 5358 | ID=Msa1368100-mRNA-1:cds;Parent=Msa1368100-mRNA-1 |
| tig0018620 | three_prime_UTR | 5674 | 5942 | 5674 | ID=Msa1368100-mRNA-1:three_prime_utr;Parent=Msa1368100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
