AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1370490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1370490 MtrunA17_Chr4g0073991 98.667 375 5 0 1 375 1 375 0.0 760
Msa1370490 MtrunA17_Chr4g0001371 52.699 389 141 9 4 374 2 365 3.56e-118 347
Msa1370490 MtrunA17_Chr3g0141411 53.942 241 101 2 107 346 96 327 1.56e-95 288
Msa1370490 MtrunA17_Chr5g0420791 54.450 191 87 0 148 338 112 302 6.47e-79 244
Msa1370490 MtrunA17_Chr8g0366071 51.546 194 91 1 148 338 116 309 5.91e-74 232
Msa1370490 MtrunA17_Chr2g0309681 52.332 193 90 1 145 337 198 388 4.66e-70 224
Msa1370490 MtrunA17_Chr8g0356301 51.579 190 90 1 145 334 192 379 1.03e-69 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1370490 AT5G57970.1 63.112 347 118 2 4 341 2 347 2.42e-156 444
Msa1370490 AT5G57970.2 63.112 347 118 2 4 341 2 347 2.42e-156 444
Msa1370490 AT1G15970.1 52.367 338 148 4 7 338 5 335 5.26e-108 321
Msa1370490 AT1G15970.2 52.367 338 148 4 7 338 5 335 5.26e-108 321
Msa1370490 AT1G80850.1 50.867 346 136 7 4 338 2 324 3.18e-104 310
Msa1370490 AT1G75090.1 59.686 191 77 0 148 338 119 309 8.83e-87 266
Msa1370490 AT1G13635.2 48.691 191 98 0 148 338 115 305 2.18e-72 228
Msa1370490 AT1G13635.1 48.691 191 98 0 148 338 115 305 2.18e-72 228
Msa1370490 AT3G12710.1 50.000 190 93 1 148 337 122 309 2.27e-66 213
Msa1370490 AT5G44680.1 49.495 198 88 2 145 337 161 351 5.55e-66 213

Find 141 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAATATACCTTTGATATT+TGG 0.167727 tig0019129:-94668 None:intergenic
CATTAGTTGCTTCAGATTTC+AGG 0.175137 tig0019129:+96089 Msa1370490:CDS
AACACAAATCTTTCTAATTT+AGG 0.190089 tig0019129:-92897 None:intergenic
GCTGATTGGATTTAAGAAAA+TGG 0.195009 tig0019129:-92607 None:intergenic
ATTTCTTTGAAACCCAAAAT+TGG 0.214254 tig0019129:-92649 None:intergenic
ACTGAGAAAGGCTGAGAAAT+TGG 0.233316 tig0019129:+93046 Msa1370490:CDS
GATCCAAGCACACCTCTTCT+TGG 0.242214 tig0019129:-93357 None:intergenic
AGAAGCATCTTTCTTCTCTT+TGG 0.257673 tig0019129:-93087 None:intergenic
CGAGAAAATGCTGGGGAAAA+AGG 0.273608 tig0019129:-92368 None:intergenic
TGCTGTTGTATGAAGCTTTC+CGG 0.274511 tig0019129:+96360 Msa1370490:three_prime_UTR
CGGGAACCTGTCGGGGATAT+CGG 0.276657 tig0019129:-95948 None:intergenic
TTGCTAATAACTTCAGCTTT+TGG 0.286287 tig0019129:-95979 None:intergenic
CCGTCAGAAACAACACTTCT+TGG 0.294148 tig0019129:-93299 None:intergenic
TTCATTTCATTTCATTATAC+AGG 0.297306 tig0019129:+96490 Msa1370490:three_prime_UTR
GGATGGAAGCCTTAACAAAT+TGG 0.319021 tig0019129:+96381 Msa1370490:three_prime_UTR
CAAAATTGGAAACCTATAAA+AGG 0.320600 tig0019129:-92635 None:intergenic
ATTGGGCAAGGAGGTTGATT+TGG 0.323664 tig0019129:+93064 Msa1370490:CDS
CTGATTGGATTTAAGAAAAT+GGG 0.336198 tig0019129:-92606 None:intergenic
TTGAGCATCCTCATTCTTGA+TGG 0.348083 tig0019129:-96148 None:intergenic
TATAAAAGGTTGAAGCTGAT+TGG 0.349710 tig0019129:-92621 None:intergenic
TGGAAGCAAAATTAGGGTTT+AGG 0.358709 tig0019129:-92574 None:intergenic
CGGTGATTGATTGTGTGTAT+TGG 0.369419 tig0019129:+92862 Msa1370490:five_prime_UTR
TCATGGAAAGCAGCATAATA+TGG 0.372996 tig0019129:-94158 None:intergenic
TGCCAGGTCATAGTAGAGTT+TGG 0.373213 tig0019129:+95868 Msa1370490:intron
TTTGTGTTAATGTCAGCTTC+AGG 0.378827 tig0019129:+92912 Msa1370490:exon
GATGAATGCTTCGTGTTCTT+CGG 0.379133 tig0019129:+93181 Msa1370490:CDS
AACAATGCAGAACGGAATCT+TGG 0.379953 tig0019129:+92504 Msa1370490:five_prime_UTR
GGTCATTCGACAATTACATT+TGG 0.384849 tig0019129:+95890 Msa1370490:CDS
AAGGAACTTGTAGTGGTTCC+TGG 0.388803 tig0019129:-94603 None:intergenic
AGAATGAATCACAGTAAATC+TGG 0.393677 tig0019129:+96239 Msa1370490:exon
TTCTTGGATTGTGCACCATC+AGG 0.399421 tig0019129:-93341 None:intergenic
AATTCTACACCAATTTGTTA+AGG 0.403877 tig0019129:-96390 None:intergenic
TTTCATAGCCGAGCTTCTAC+TGG 0.408353 tig0019129:+93221 Msa1370490:CDS
ATCACACTATCACATGCATT+TGG 0.411863 tig0019129:-96171 None:intergenic
GTAAATCTGGTAGATCAAAT+AGG 0.412334 tig0019129:+96252 Msa1370490:three_prime_UTR
AGGCCTGTGTTTGGTCCTGC+TGG 0.417888 tig0019129:+92978 Msa1370490:CDS
GCTTGGATCACTCCCAATAC+TGG 0.420323 tig0019129:+93371 Msa1370490:CDS
GAGTGGAACAAACCAGTATT+GGG 0.425297 tig0019129:-93383 None:intergenic
CTGAGAAAGGCTGAGAAATT+GGG 0.429522 tig0019129:+93047 Msa1370490:CDS
CTGAGATTGAGTTATATTTG+AGG 0.439299 tig0019129:+96292 Msa1370490:three_prime_UTR
GCCAGGTCATAGTAGAGTTT+GGG 0.439992 tig0019129:+95869 Msa1370490:intron
CTCAAATATAACTCAATCTC+AGG 0.441220 tig0019129:-96291 None:intergenic
TTGTGTATCAATCTCAAAGA+AGG 0.444043 tig0019129:+96320 Msa1370490:three_prime_UTR
ATACTCCTTCATGCAGGTGG+TGG 0.445350 tig0019129:+96047 Msa1370490:CDS
TGCTTTCCATGATGAAGAAT+GGG 0.446554 tig0019129:+94169 Msa1370490:CDS
AACGGAATCTTGGCCTTTCG+AGG 0.448830 tig0019129:+92514 Msa1370490:five_prime_UTR
AACTTCAATGCTACCTCAAA+AGG 0.451783 tig0019129:-92475 None:intergenic
AGATTCATGAACTCTTCTTA+AGG 0.455774 tig0019129:+92426 Msa1370490:five_prime_UTR
CTCAAAATTAAATGAGAAGA+AGG 0.457503 tig0019129:+94572 Msa1370490:CDS
TACTCCTTCATGCAGGTGGT+GGG 0.461248 tig0019129:+96048 Msa1370490:CDS
GGGTCACTTCATTGTGCACC+AGG 0.462816 tig0019129:+92722 Msa1370490:five_prime_UTR
ACATACTTGTCGTCATGTAC+TGG 0.466966 tig0019129:-94197 None:intergenic
TGCTTCAAAGCCACTGAGAA+AGG 0.468747 tig0019129:+93034 Msa1370490:CDS
AGAGAGAGAAGGAAGAGTGT+GGG 0.470579 tig0019129:-92335 None:intergenic
GGAGTGGAACAAACCAGTAT+TGG 0.477722 tig0019129:-93384 None:intergenic
TTTACTGATCCAGTGTTAGC+AGG 0.482725 tig0019129:+96451 Msa1370490:three_prime_UTR
TCAGAAGCAAGGCCTGTGTT+TGG 0.484933 tig0019129:+92969 Msa1370490:CDS
CACATGTAGGAAACTGTTTG+AGG 0.486819 tig0019129:+94301 Msa1370490:intron
TTGGAATCTCCTCCTCCTGA+TGG 0.488289 tig0019129:+93326 Msa1370490:CDS
TATCGGAATTTGCTAAGTAT+AGG 0.490240 tig0019129:-95931 None:intergenic
AAGAGAGAGAAGGAAGAGTG+TGG 0.491755 tig0019129:-92336 None:intergenic
AGAAGAGGTTTCCGCGGTGT+GGG 0.494446 tig0019129:+96012 Msa1370490:CDS
ACATTCATAGACCTCAATCT+AGG 0.495280 tig0019129:-92939 None:intergenic
GAATGTGTGGCTGCAGCAGA+AGG 0.497985 tig0019129:+96111 Msa1370490:CDS
TGTCTCTTGCTTAGAATGGC+TGG 0.501678 tig0019129:-94362 None:intergenic
TTCCGTTCTGCATTGTTGAA+AGG 0.504358 tig0019129:-92498 None:intergenic
CTGCTTTCCATGATGAAGAA+TGG 0.506293 tig0019129:+94168 Msa1370490:CDS
CAATTTCTGATCAGAGAGTA+AGG 0.506313 tig0019129:-94622 None:intergenic
AATCCAAGAAGAGGTGTGCT+TGG 0.508627 tig0019129:+93354 Msa1370490:CDS
CGCGGAAACCTCTTCTCACC+AGG 0.511916 tig0019129:-96005 None:intergenic
TGATTGATTGTGTGTATTGG+TGG 0.514796 tig0019129:+92865 Msa1370490:five_prime_UTR
TTGACTCGGTCTAATAGCTA+TGG 0.521589 tig0019129:+93248 Msa1370490:CDS
GAACCTGTCTTATTTCCAGC+AGG 0.522965 tig0019129:-92993 None:intergenic
AATGTGTCTCTTGCTTAGAA+TGG 0.523823 tig0019129:-94366 None:intergenic
GATTGATTGTGTGTATTGGT+GGG 0.528265 tig0019129:+92866 Msa1370490:five_prime_UTR
GGTCCTGCTGGAAATAAGAC+AGG 0.532123 tig0019129:+92990 Msa1370490:CDS
TGTTGTTTCTGACGGTGTGT+TGG 0.536773 tig0019129:+93307 Msa1370490:CDS
GGACAAACTCAAATTATCAA+TGG 0.537441 tig0019129:-96214 None:intergenic
ACTCAAATTATCAATGGCAA+TGG 0.539519 tig0019129:-96208 None:intergenic
ACCTCAAAAGGTTGGCGCCA+CGG 0.539586 tig0019129:-92463 None:intergenic
GAGAGAGAAGGAAGAGTGTG+GGG 0.544795 tig0019129:-92334 None:intergenic
CTTCAGATTTCAGGAATGTG+TGG 0.546257 tig0019129:+96098 Msa1370490:CDS
CTTCAGGAGGTCCTAGATTG+AGG 0.547316 tig0019129:+92928 Msa1370490:CDS
ATTTACTGTGATTCATTCTG+AGG 0.549011 tig0019129:-96235 None:intergenic
GAGAAGAGGTTTCCGCGGTG+TGG 0.552325 tig0019129:+96011 Msa1370490:CDS
GAACTCCCCATTCTTCATCA+TGG 0.554190 tig0019129:-94175 None:intergenic
TTTCAAAAGGGTGTGTAGTG+AGG 0.554978 tig0019129:+92816 Msa1370490:five_prime_UTR
TTTCCGCGGTGTGGGTCCCA+CGG 0.558212 tig0019129:+96020 Msa1370490:CDS
ATTTGCTAAGTATAGGCTTG+TGG 0.560857 tig0019129:-95924 None:intergenic
CCAAGAAGTGTTGTTTCTGA+CGG 0.562851 tig0019129:+93299 Msa1370490:CDS
TGTGTATCAATCTCAAAGAA+GGG 0.565652 tig0019129:+96321 Msa1370490:three_prime_UTR
CTCTCTGATCAGAAATTGCG+TGG 0.565696 tig0019129:+94627 Msa1370490:CDS
AATTTGTTAAGGCTTCCATC+CGG 0.568096 tig0019129:-96379 None:intergenic
GATGAAAATGAAGAGAGAGA+AGG 0.570404 tig0019129:-92346 None:intergenic
ACTCCTTCATGCAGGTGGTG+GGG 0.578093 tig0019129:+96049 Msa1370490:CDS
GAAATCTGAAGCAACTAATG+AGG 0.581296 tig0019129:-96086 None:intergenic
CAAATTCCGATATCCCCGAC+AGG 0.584407 tig0019129:+95942 Msa1370490:CDS
AGCAAAGACCTGGTGAGAAG+AGG 0.585041 tig0019129:+95997 Msa1370490:CDS
GTGCTCTATCTGAACTCACT+TGG 0.585688 tig0019129:+94339 Msa1370490:CDS
TCAATCTTCCAGTAGAAGCT+CGG 0.588776 tig0019129:-93229 None:intergenic
GGAGAATTCCATCAAGAATG+AGG 0.588997 tig0019129:+96140 Msa1370490:CDS
TCAATGCTACCTCAAAAGGT+TGG 0.594649 tig0019129:-92471 None:intergenic
AATTTCTCAGCCTTTCTCAG+TGG 0.596074 tig0019129:-93044 None:intergenic
TTGGATTGTGCACCATCAGG+AGG 0.596535 tig0019129:-93338 None:intergenic
ATCTGAAGCAACTAATGAGG+TGG 0.598594 tig0019129:-96083 None:intergenic
GTGTTAATGTCAGCTTCAGG+AGG 0.603358 tig0019129:+92915 Msa1370490:exon
CTTCTACTGGAAGATTGACT+CGG 0.603962 tig0019129:+93234 Msa1370490:CDS
GGCTGCAGCAGAAGGGAAGG+TGG 0.608615 tig0019129:+96119 Msa1370490:CDS
GATTGTGCACCATCAGGAGG+AGG 0.608674 tig0019129:-93335 None:intergenic
TATCTATTACCTGCTAACAC+TGG 0.609178 tig0019129:-96460 None:intergenic
AGAGAGTAAGGAACTTGTAG+TGG 0.609547 tig0019129:-94610 None:intergenic
TAACCCCACCACCTGCATGA+AGG 0.610546 tig0019129:-96052 None:intergenic
GAATGCACGCCAAATATCAA+AGG 0.612654 tig0019129:+94659 Msa1370490:CDS
TCAAACAAAGAAAGAAAGCA+AGG 0.615816 tig0019129:-92297 None:intergenic
GGTCATATACTCCTTCATGC+AGG 0.616386 tig0019129:+96041 Msa1370490:CDS
CATATACTCCTTCATGCAGG+TGG 0.620564 tig0019129:+96044 Msa1370490:CDS
CTAATAGCTATGGTTTGACA+AGG 0.620795 tig0019129:+93258 Msa1370490:CDS
TTCCTTTCAACAATGCAGAA+CGG 0.621013 tig0019129:+92496 Msa1370490:five_prime_UTR
AAATGCATGTGATAGTGTGA+TGG 0.629136 tig0019129:+96173 Msa1370490:CDS
AATGTGTGGCTGCAGCAGAA+GGG 0.629409 tig0019129:+96112 Msa1370490:CDS
TGAAGTTATTAGCAAAGACC+TGG 0.634551 tig0019129:+95987 Msa1370490:CDS
GGCTGAGAAATTGGGCAAGG+AGG 0.635303 tig0019129:+93055 Msa1370490:CDS
GCTATGGTTTGACAAGGAAG+CGG 0.636905 tig0019129:+93264 Msa1370490:CDS
TAGCTGAAGAGAACCTCGAA+AGG 0.638602 tig0019129:-92527 None:intergenic
ATGGTGCACAATCCAAGAAG+AGG 0.638802 tig0019129:+93345 Msa1370490:CDS
GAGAAGAAGGTGATAACACC+AGG 0.639020 tig0019129:+94585 Msa1370490:CDS
TTTCCAGCAGGACCAAACAC+AGG 0.641381 tig0019129:-92981 None:intergenic
GCGCAACACTGAAGAAACAC+TGG 0.647990 tig0019129:-93126 None:intergenic
ATGTTGCTGACTCAGAAGCA+AGG 0.650117 tig0019129:+92958 Msa1370490:CDS
TCGGCTATGAAACGAGTCTG+TGG 0.650238 tig0019129:-93210 None:intergenic
AAAGGCTGAGAAATTGGGCA+AGG 0.650312 tig0019129:+93052 Msa1370490:CDS
ATGAAGGAGTATATGACCGT+GGG 0.650909 tig0019129:-96036 None:intergenic
GTTGTATGAAGCTTTCCGGA+TGG 0.655464 tig0019129:+96364 Msa1370490:three_prime_UTR
TGTGGCTGCAGCAGAAGGGA+AGG 0.656234 tig0019129:+96116 Msa1370490:CDS
AATGCAACAACTGCTCATGT+CGG 0.657461 tig0019129:-93148 None:intergenic
CATGAAGGAGTATATGACCG+TGG 0.677378 tig0019129:-96037 None:intergenic
CTGGTGAGAAGAGGTTTCCG+CGG 0.690988 tig0019129:+96006 Msa1370490:CDS
AGGAACGTGTGTTATTACCG+TGG 0.703000 tig0019129:+92446 Msa1370490:five_prime_UTR
ACACTGGCAGAATGTGACTG+AGG 0.705590 tig0019129:-93110 None:intergenic
GCTTTCCATGATGAAGAATG+GGG 0.729667 tig0019129:+94170 Msa1370490:CDS
TGACCGTGGGACCCACACCG+CGG 0.744972 tig0019129:-96023 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTTCTAAATTTTTA+TGG + tig0019129:92769-92788 Msa1370490:five_prime_UTR 10.0%
!!! GTTTTTTTCTAAATTTTTAT+GGG + tig0019129:92770-92789 Msa1370490:five_prime_UTR 10.0%
!! TAAATCTTTAGTTATATATT+GGG + tig0019129:94777-94796 Msa1370490:intron 10.0%
!! CTTATTCACATTTATTTATA+TGG - tig0019129:93778-93797 None:intergenic 15.0%
!! TTGAAGAAATAAAAGAAATT+TGG - tig0019129:94418-94437 None:intergenic 15.0%
!!! ATAACTAAAGATTTAGAATA+TGG - tig0019129:94772-94791 None:intergenic 15.0%
!! CTAAATCTTTAGTTATATAT+TGG + tig0019129:94776-94795 Msa1370490:intron 15.0%
!! ATTTAATGATGATTTGATTA+GGG + tig0019129:95535-95554 Msa1370490:intron 15.0%
!! TTTAGATAATAAAGGTAATT+GGG + tig0019129:95561-95580 Msa1370490:intron 15.0%
!!! TTTTATAGGTTTCCAATTTT+GGG + tig0019129:92637-92656 Msa1370490:five_prime_UTR 20.0%
!!! AAAATTCAAGATCTGTTTTT+GGG + tig0019129:92701-92720 Msa1370490:five_prime_UTR 20.0%
!!! TGATAATTAGAGTTTTCAAA+AGG + tig0019129:92803-92822 Msa1370490:five_prime_UTR 20.0%
!!! GATAATTAGAGTTTTCAAAA+GGG + tig0019129:92804-92823 Msa1370490:five_prime_UTR 20.0%
!! GTAAAAAAAGAAGAAGAATT+TGG + tig0019129:92838-92857 Msa1370490:five_prime_UTR 20.0%
!! AACACAAATCTTTCTAATTT+AGG - tig0019129:92900-92919 None:intergenic 20.0%
!!! AAGTAAAATCTCAATTTTCA+AGG - tig0019129:93716-93735 None:intergenic 20.0%
!! TTTAAATTCATAACTCCATT+TGG + tig0019129:93734-93753 Msa1370490:intron 20.0%
!!! TAGTTGTTGTTTTTTATCAT+TGG + tig0019129:93924-93943 Msa1370490:intron 20.0%
!!! TAAAAATAGTCTTGTTATGT+TGG + tig0019129:94230-94249 Msa1370490:intron 20.0%
!! ACTAATATACCTTTGATATT+TGG - tig0019129:94671-94690 None:intergenic 20.0%
!!! TGATTTATTTTTTTTCCGAA+GGG - tig0019129:95255-95274 None:intergenic 20.0%
!!! ATGATTTATTTTTTTTCCGA+AGG - tig0019129:95256-95275 None:intergenic 20.0%
!!! ATATTTCTGTATTGATCTTT+TGG + tig0019129:95280-95299 Msa1370490:intron 20.0%
!! AAGTCGAATAATTTCATAAA+AGG + tig0019129:95324-95343 Msa1370490:intron 20.0%
!! AGTCGAATAATTTCATAAAA+GGG + tig0019129:95325-95344 Msa1370490:intron 20.0%
!!! AAGCCTTTTTTTTCAAAAAA+GGG - tig0019129:95405-95424 None:intergenic 20.0%
!!! TATAATTACCATTGATAATG+AGG + tig0019129:95466-95485 Msa1370490:intron 20.0%
!!! ATAATTACCATTGATAATGA+GGG + tig0019129:95467-95486 Msa1370490:intron 20.0%
!! CATTTAATGATGATTTGATT+AGG + tig0019129:95534-95553 Msa1370490:intron 20.0%
!! GTTTAGATAATAAAGGTAAT+TGG + tig0019129:95560-95579 Msa1370490:intron 20.0%
!! ATTGTGACAAATTAGAATAT+AGG - tig0019129:95667-95686 None:intergenic 20.0%
!! GTTAAAGAATCCAAATAATT+AGG - tig0019129:95699-95718 None:intergenic 20.0%
!! TTCATTTCATTTCATTATAC+AGG + tig0019129:96490-96509 Msa1370490:three_prime_UTR 20.0%
!!! TTCATGAATCTATTTTTTCC+TGG - tig0019129:92417-92436 None:intergenic 25.0%
!!! ACTTTTTGGAAGCAAAATTA+GGG - tig0019129:92583-92602 None:intergenic 25.0%
! CTGATTGGATTTAAGAAAAT+GGG - tig0019129:92609-92628 None:intergenic 25.0%
! CAAAATTGGAAACCTATAAA+AGG - tig0019129:92638-92657 None:intergenic 25.0%
!! CTTTTATAGGTTTCCAATTT+TGG + tig0019129:92636-92655 Msa1370490:five_prime_UTR 25.0%
!!! ATTTCTTTGAAACCCAAAAT+TGG - tig0019129:92652-92671 None:intergenic 25.0%
!!! AATTTTGGGTTTCAAAGAAA+TGG + tig0019129:92651-92670 Msa1370490:five_prime_UTR 25.0%
!!! ATTTTGGGTTTCAAAGAAAT+GGG + tig0019129:92652-92671 Msa1370490:five_prime_UTR 25.0%
!! GAAAATTCAAGATCTGTTTT+TGG + tig0019129:92700-92719 Msa1370490:five_prime_UTR 25.0%
!!! AAATTCAAGATCTGTTTTTG+GGG + tig0019129:92702-92721 Msa1370490:five_prime_UTR 25.0%
! AAAAAGAAGAAGAATTTGGT+CGG + tig0019129:92842-92861 Msa1370490:five_prime_UTR 25.0%
! TTAAGAAATCAAGGAAATTG+GGG - tig0019129:93412-93431 None:intergenic 25.0%
! CTTAAGAAATCAAGGAAATT+GGG - tig0019129:93413-93432 None:intergenic 25.0%
! TCTTAAGAAATCAAGGAAAT+TGG - tig0019129:93414-93433 None:intergenic 25.0%
! AATGTCATCTTAAGAAATCA+AGG - tig0019129:93421-93440 None:intergenic 25.0%
! TGATTTCTTAAGATGACATT+TGG + tig0019129:93421-93440 Msa1370490:intron 25.0%
!!! GAGTGATTTTAAAACATCAT+GGG + tig0019129:93443-93462 Msa1370490:intron 25.0%
!!! TTTTTTTTCCTGTATATGTG+TGG + tig0019129:93500-93519 Msa1370490:intron 25.0%
! ATAATATGTTGATGTCCAAA+TGG - tig0019129:93752-93771 None:intergenic 25.0%
! TTTATCATTGGAGAGAAAAT+TGG + tig0019129:93936-93955 Msa1370490:intron 25.0%
! TTATCATTGGAGAGAAAATT+GGG + tig0019129:93937-93956 Msa1370490:intron 25.0%
!!! TATTAAGTTCTGAACTACTT+TGG + tig0019129:94083-94102 Msa1370490:intron 25.0%
!! AAATGTAGCCAATTTTATCA+TGG + tig0019129:94437-94456 Msa1370490:intron 25.0%
! CAAAGTCAAAGAGAAAAAAA+TGG - tig0019129:94485-94504 None:intergenic 25.0%
! CTCAAAATTAAATGAGAAGA+AGG + tig0019129:94572-94591 Msa1370490:CDS 25.0%
! AGTTATATATTGGGTGTATA+TGG + tig0019129:94786-94805 Msa1370490:intron 25.0%
! GTTATATATTGGGTGTATAT+GGG + tig0019129:94787-94806 Msa1370490:intron 25.0%
! AGATATATATTGGGTGTATA+TGG + tig0019129:94866-94885 Msa1370490:intron 25.0%
!! TATGGTTCTTTTGGTATAAT+TGG + tig0019129:94884-94903 Msa1370490:intron 25.0%
! ATGAATAAAGTGTAATTCTG+AGG + tig0019129:95172-95191 Msa1370490:intron 25.0%
! TGAATAAAGTGTAATTCTGA+GGG + tig0019129:95173-95192 Msa1370490:intron 25.0%
!!! CTTCCCTTTTTTGAAAAAAA+AGG + tig0019129:95399-95418 Msa1370490:intron 25.0%
!!! CAAGCCTTTTTTTTCAAAAA+AGG - tig0019129:95406-95425 None:intergenic 25.0%
! TGTACGAAAGATTAATATCA+TGG - tig0019129:95634-95653 None:intergenic 25.0%
! GAATTGTAGTGTTTAATGTT+AGG - tig0019129:95756-95775 None:intergenic 25.0%
!!! AATTCTACACCAATTTGTTA+AGG - tig0019129:96393-96412 None:intergenic 25.0%
TCAAACAAAGAAAGAAAGCA+AGG - tig0019129:92300-92319 None:intergenic 30.0%
! AAATTTTGCGAGAAAATGCT+GGG - tig0019129:92379-92398 None:intergenic 30.0%
AGATTCATGAACTCTTCTTA+AGG + tig0019129:92426-92445 Msa1370490:five_prime_UTR 30.0%
!! GACTTTTTGGAAGCAAAATT+AGG - tig0019129:92584-92603 None:intergenic 30.0%
!!! AAGAAAATGGGTTGACTTTT+TGG - tig0019129:92597-92616 None:intergenic 30.0%
GCTGATTGGATTTAAGAAAA+TGG - tig0019129:92610-92629 None:intergenic 30.0%
TATAAAAGGTTGAAGCTGAT+TGG - tig0019129:92624-92643 None:intergenic 30.0%
! AATCAGCTTCAACCTTTTAT+AGG + tig0019129:92623-92642 Msa1370490:five_prime_UTR 30.0%
!!! TTTTGGGTTTCAAAGAAATG+GGG + tig0019129:92653-92672 Msa1370490:five_prime_UTR 30.0%
!!! GGAGTGATTTTAAAACATCA+TGG + tig0019129:93442-93461 Msa1370490:intron 30.0%
TTAAACACATAATTATGCCC+CGG - tig0019129:93469-93488 None:intergenic 30.0%
CTGAATTGCTTTCACATATA+TGG + tig0019129:93576-93595 Msa1370490:intron 30.0%
AATTGCTTTCACATATATGG+CGG + tig0019129:93579-93598 Msa1370490:intron 30.0%
GTAGTTTAATCTCATTCATC+TGG + tig0019129:93604-93623 Msa1370490:intron 30.0%
TCAAATATTCATTCGTGCAA+TGG + tig0019129:93843-93862 Msa1370490:intron 30.0%
CAAATATTCATTCGTGCAAT+GGG + tig0019129:93844-93863 Msa1370490:intron 30.0%
ATTGATCTATATCCAGTTTG+CGG - tig0019129:93983-94002 None:intergenic 30.0%
! CTAGTTCTCATTCATTCATA+TGG - tig0019129:94018-94037 None:intergenic 30.0%
AGAAATTTCCAGTAAAGGTA+TGG - tig0019129:94041-94060 None:intergenic 30.0%
TGTAGAGAAATTTCCAGTAA+AGG - tig0019129:94046-94065 None:intergenic 30.0%
TCAACAAGTAAACTTAGTCA+GGG - tig0019129:94130-94149 None:intergenic 30.0%
ATCAACAAGTAAACTTAGTC+AGG - tig0019129:94131-94150 None:intergenic 30.0%
!! AATAGTCTTGTTATGTTGGT+TGG + tig0019129:94234-94253 Msa1370490:intron 30.0%
! ATCCTCCATTAAATTTTGCT+TGG + tig0019129:94268-94287 Msa1370490:intron 30.0%
! TAAGCAAGAGACACATTTTT+AGG + tig0019129:94372-94391 Msa1370490:CDS 30.0%
GAAAAAAATGGCTACATATG+AGG - tig0019129:94473-94492 None:intergenic 30.0%
!!! TTTAATTTTGAGACAGCAAC+TGG - tig0019129:94564-94583 None:intergenic 30.0%
ATTGTAGAATATACCCTCTT+GGG + tig0019129:94715-94734 Msa1370490:intron 30.0%
AATTATGATCTAACCCAAGA+GGG - tig0019129:94731-94750 None:intergenic 30.0%
TAATTATGATCTAACCCAAG+AGG - tig0019129:94732-94751 None:intergenic 30.0%
GGTTAGATCATAATTACTTG+TGG + tig0019129:94736-94755 Msa1370490:intron 30.0%
! ATGGGTTCTTTTGGTATAAT+TGG + tig0019129:94805-94824 Msa1370490:intron 30.0%
! TGGGTTCTTTTGGTATAATT+GGG + tig0019129:94806-94825 Msa1370490:intron 30.0%
TCCCTTGAGTAGATATATAT+TGG + tig0019129:94856-94875 Msa1370490:intron 30.0%
CCCAATATATATCTACTCAA+GGG - tig0019129:94860-94879 None:intergenic 30.0%
CCCTTGAGTAGATATATATT+GGG + tig0019129:94857-94876 Msa1370490:intron 30.0%
ACCCAATATATATCTACTCA+AGG - tig0019129:94861-94880 None:intergenic 30.0%
! AGCTCTCTCAAGATTTTTAA+CGG + tig0019129:94971-94990 Msa1370490:intron 30.0%
GAGTACTATAACAAAGATCT+CGG - tig0019129:95439-95458 None:intergenic 30.0%
!! ATTGATAATGAGGGACTAAT+GGG + tig0019129:95476-95495 Msa1370490:intron 30.0%
TAATGATGATTTGATTAGGG+AGG + tig0019129:95538-95557 Msa1370490:intron 30.0%
TAGGGAGGTTTAGATAATAA+AGG + tig0019129:95553-95572 Msa1370490:intron 30.0%
! TAATAAAGGTAATTGGGTTG+TGG + tig0019129:95567-95586 Msa1370490:intron 30.0%
!! TTTAATTTGCATGACCCATA+TGG + tig0019129:95602-95621 Msa1370490:intron 30.0%
!! TTAATTTGCATGACCCATAT+GGG + tig0019129:95603-95622 Msa1370490:intron 30.0%
TGATGTGAGACCTAATTATT+TGG + tig0019129:95686-95705 Msa1370490:intron 30.0%
!! TATCGGAATTTGCTAAGTAT+AGG - tig0019129:95934-95953 None:intergenic 30.0%
!!! TTCAGCTTTTGGTGTTTTAA+CGG - tig0019129:95971-95990 None:intergenic 30.0%
! TTGCTAATAACTTCAGCTTT+TGG - tig0019129:95982-96001 None:intergenic 30.0%
ACTCAAATTATCAATGGCAA+TGG - tig0019129:96211-96230 None:intergenic 30.0%
GGACAAACTCAAATTATCAA+TGG - tig0019129:96217-96236 None:intergenic 30.0%
ATTTACTGTGATTCATTCTG+AGG - tig0019129:96238-96257 None:intergenic 30.0%
AGAATGAATCACAGTAAATC+TGG + tig0019129:96239-96258 Msa1370490:exon 30.0%
GTAAATCTGGTAGATCAAAT+AGG + tig0019129:96252-96271 Msa1370490:three_prime_UTR 30.0%
CTCAAATATAACTCAATCTC+AGG - tig0019129:96294-96313 None:intergenic 30.0%
CTGAGATTGAGTTATATTTG+AGG + tig0019129:96292-96311 Msa1370490:three_prime_UTR 30.0%
TTGTGTATCAATCTCAAAGA+AGG + tig0019129:96320-96339 Msa1370490:three_prime_UTR 30.0%
TGTGTATCAATCTCAAAGAA+GGG + tig0019129:96321-96340 Msa1370490:three_prime_UTR 30.0%
GATGAAAATGAAGAGAGAGA+AGG - tig0019129:92349-92368 None:intergenic 35.0%
! AATTTTGCGAGAAAATGCTG+GGG - tig0019129:92378-92397 None:intergenic 35.0%
! GAAATTTTGCGAGAAAATGC+TGG - tig0019129:92380-92399 None:intergenic 35.0%
! TTTCTCTGCTACTATTTTCC+AGG + tig0019129:92396-92415 Msa1370490:five_prime_UTR 35.0%
AACTTCAATGCTACCTCAAA+AGG - tig0019129:92478-92497 None:intergenic 35.0%
TTCCTTTCAACAATGCAGAA+CGG + tig0019129:92496-92515 Msa1370490:five_prime_UTR 35.0%
TGGAAGCAAAATTAGGGTTT+AGG - tig0019129:92577-92596 None:intergenic 35.0%
! GTTTTCGTAGTTCACTTTGA+AGG + tig0019129:92675-92694 Msa1370490:five_prime_UTR 35.0%
! TCGAACTTTTAACAAACACC+TGG - tig0019129:92743-92762 None:intergenic 35.0%
TGATTGATTGTGTGTATTGG+TGG + tig0019129:92865-92884 Msa1370490:five_prime_UTR 35.0%
! GATTGATTGTGTGTATTGGT+GGG + tig0019129:92866-92885 Msa1370490:five_prime_UTR 35.0%
TTTGTGTTAATGTCAGCTTC+AGG + tig0019129:92912-92931 Msa1370490:exon 35.0%
ACATTCATAGACCTCAATCT+AGG - tig0019129:92942-92961 None:intergenic 35.0%
!! AGAAGCATCTTTCTTCTCTT+TGG - tig0019129:93090-93109 None:intergenic 35.0%
CTAATAGCTATGGTTTGACA+AGG + tig0019129:93258-93277 Msa1370490:CDS 35.0%
!!! GATTTTAAAACATCATGGGC+CGG + tig0019129:93447-93466 Msa1370490:intron 35.0%
!!! ATTTTAAAACATCATGGGCC+GGG + tig0019129:93448-93467 Msa1370490:intron 35.0%
ACTATGAACTATCCTACCAA+AGG - tig0019129:93533-93552 None:intergenic 35.0%
TGGTAGGATAGTTCATAGTT+CGG + tig0019129:93534-93553 Msa1370490:intron 35.0%
! AGTTCGGTTCATGATACTTT+TGG + tig0019129:93550-93569 Msa1370490:intron 35.0%
! TCTCATTCATCTGGTTTCAT+TGG + tig0019129:93613-93632 Msa1370490:intron 35.0%
! AATGGGTTTGTAGCCAAAAT+GGG + tig0019129:93861-93880 Msa1370490:intron 35.0%
! TTGCATGTTTTACCCCATTT+TGG - tig0019129:93877-93896 None:intergenic 35.0%
AAATGGGGTAAAACATGCAA+TGG + tig0019129:93877-93896 Msa1370490:intron 35.0%
TGGACATGTACCTCTTATTA+TGG + tig0019129:93897-93916 Msa1370490:intron 35.0%
GGACATGTACCTCTTATTAT+GGG + tig0019129:93898-93917 Msa1370490:intron 35.0%
CAACTATAGCCCATAATAAG+AGG - tig0019129:93910-93929 None:intergenic 35.0%
TCTCATTCATTCATATGGAG+TGG - tig0019129:94013-94032 None:intergenic 35.0%
TCATGGAAAGCAGCATAATA+TGG - tig0019129:94161-94180 None:intergenic 35.0%
TGCTTTCCATGATGAAGAAT+GGG + tig0019129:94169-94188 Msa1370490:CDS 35.0%
! CTTGTTATGTTGGTTGGAAA+AGG + tig0019129:94240-94259 Msa1370490:intron 35.0%
TGCCAAGCAAAATTTAATGG+AGG - tig0019129:94273-94292 None:intergenic 35.0%
GAGTGCCAAGCAAAATTTAA+TGG - tig0019129:94276-94295 None:intergenic 35.0%
AATGTGTCTCTTGCTTAGAA+TGG - tig0019129:94369-94388 None:intergenic 35.0%
TTGTTAACAAAGTCCTTTGC+AGG + tig0019129:94517-94536 Msa1370490:intron 35.0%
TGTTAACAAAGTCCTTTGCA+GGG + tig0019129:94518-94537 Msa1370490:intron 35.0%
CAATTTCTGATCAGAGAGTA+AGG - tig0019129:94625-94644 None:intergenic 35.0%
! GAGGGTATATTCTACAATGA+AGG - tig0019129:94713-94732 None:intergenic 35.0%
CATTGTAGAATATACCCTCT+TGG + tig0019129:94714-94733 Msa1370490:intron 35.0%
! TTGGGTGTATATGGTTCTTT+TGG + tig0019129:94875-94894 Msa1370490:intron 35.0%
TTGTGTCATACTCTACTCAA+GGG - tig0019129:94941-94960 None:intergenic 35.0%
ATTGTGTCATACTCTACTCA+AGG - tig0019129:94942-94961 None:intergenic 35.0%
TTGAGTAGAGTATGACACAA+TGG + tig0019129:94941-94960 Msa1370490:intron 35.0%
TGAGTAGAGTATGACACAAT+GGG + tig0019129:94942-94961 Msa1370490:intron 35.0%
! TTTAACGGTGCTTCATTTTC+AGG + tig0019129:94986-95005 Msa1370490:intron 35.0%
! TTAACGGTGCTTCATTTTCA+GGG + tig0019129:94987-95006 Msa1370490:intron 35.0%
ATGGGCTTAATAACATGTCT+AGG + tig0019129:95089-95108 Msa1370490:intron 35.0%
GTATATAGTACCACCTAGAA+CGG - tig0019129:95134-95153 None:intergenic 35.0%
! AAAGTGTAATTCTGAGGGTT+TGG + tig0019129:95178-95197 Msa1370490:intron 35.0%
! AAGTGTAATTCTGAGGGTTT+GGG + tig0019129:95179-95198 Msa1370490:intron 35.0%
TTCGACTTACTTTCCTAGTT+AGG - tig0019129:95312-95331 None:intergenic 35.0%
CATTAGTCCCTCATTATCAA+TGG - tig0019129:95477-95496 None:intergenic 35.0%
!! CATTGATAATGAGGGACTAA+TGG + tig0019129:95475-95494 Msa1370490:intron 35.0%
ATGCAAATTAAATGAGGACC+AGG - tig0019129:95594-95613 None:intergenic 35.0%
TGGGTCATGCAAATTAAATG+AGG - tig0019129:95600-95619 None:intergenic 35.0%
! TATCATGGTTTGTCCCATAT+GGG - tig0019129:95619-95638 None:intergenic 35.0%
! ATATCATGGTTTGTCCCATA+TGG - tig0019129:95620-95639 None:intergenic 35.0%
AATTGTGCAGAGTGCAATTA+TGG - tig0019129:95796-95815 None:intergenic 35.0%
GGTCATTCGACAATTACATT+TGG + tig0019129:95890-95909 Msa1370490:CDS 35.0%
! ATTTGCTAAGTATAGGCTTG+TGG - tig0019129:95927-95946 None:intergenic 35.0%
!!! TCAGCTTTTGGTGTTTTAAC+GGG - tig0019129:95970-95989 None:intergenic 35.0%
TGAAGTTATTAGCAAAGACC+TGG + tig0019129:95987-96006 Msa1370490:CDS 35.0%
! GAAATCTGAAGCAACTAATG+AGG - tig0019129:96089-96108 None:intergenic 35.0%
CATTAGTTGCTTCAGATTTC+AGG + tig0019129:96089-96108 Msa1370490:CDS 35.0%
ATCACACTATCACATGCATT+TGG - tig0019129:96174-96193 None:intergenic 35.0%
! AAATGCATGTGATAGTGTGA+TGG + tig0019129:96173-96192 Msa1370490:CDS 35.0%
!! AATTTGTTAAGGCTTCCATC+CGG - tig0019129:96382-96401 None:intergenic 35.0%
TATCTATTACCTGCTAACAC+TGG - tig0019129:96463-96482 None:intergenic 35.0%
TCAATGCTACCTCAAAAGGT+TGG - tig0019129:92474-92493 None:intergenic 40.0%
TTCCGTTCTGCATTGTTGAA+AGG - tig0019129:92501-92520 None:intergenic 40.0%
AACAATGCAGAACGGAATCT+TGG + tig0019129:92504-92523 Msa1370490:five_prime_UTR 40.0%
! TTTCAAAAGGGTGTGTAGTG+AGG + tig0019129:92816-92835 Msa1370490:five_prime_UTR 40.0%
CGGTGATTGATTGTGTGTAT+TGG + tig0019129:92862-92881 Msa1370490:five_prime_UTR 40.0%
AATTTCTCAGCCTTTCTCAG+TGG - tig0019129:93047-93066 None:intergenic 40.0%
ACTGAGAAAGGCTGAGAAAT+TGG + tig0019129:93046-93065 Msa1370490:CDS 40.0%
CTGAGAAAGGCTGAGAAATT+GGG + tig0019129:93047-93066 Msa1370490:CDS 40.0%
AATGCAACAACTGCTCATGT+CGG - tig0019129:93151-93170 None:intergenic 40.0%
GATGAATGCTTCGTGTTCTT+CGG + tig0019129:93181-93200 Msa1370490:CDS 40.0%
TCAATCTTCCAGTAGAAGCT+CGG - tig0019129:93232-93251 None:intergenic 40.0%
CTTCTACTGGAAGATTGACT+CGG + tig0019129:93234-93253 Msa1370490:CDS 40.0%
!! TTGACTCGGTCTAATAGCTA+TGG + tig0019129:93248-93267 Msa1370490:CDS 40.0%
!! CCAAGAAGTGTTGTTTCTGA+CGG + tig0019129:93299-93318 Msa1370490:CDS 40.0%
GAGTGGAACAAACCAGTATT+GGG - tig0019129:93386-93405 None:intergenic 40.0%
GAAATCAAGGAAATTGGGGA+AGG - tig0019129:93408-93427 None:intergenic 40.0%
!!! TTTTAAAACATCATGGGCCG+GGG + tig0019129:93449-93468 Msa1370490:intron 40.0%
! CAATGGGTTTGTAGCCAAAA+TGG + tig0019129:93860-93879 Msa1370490:intron 40.0%
ATGGGTTTGTAGCCAAAATG+GGG + tig0019129:93862-93881 Msa1370490:intron 40.0%
AGAACTAGCCATACCTTTAC+TGG + tig0019129:94030-94049 Msa1370490:intron 40.0%
CTGCTTTCCATGATGAAGAA+TGG + tig0019129:94168-94187 Msa1370490:CDS 40.0%
GCTTTCCATGATGAAGAATG+GGG + tig0019129:94170-94189 Msa1370490:CDS 40.0%
ACATACTTGTCGTCATGTAC+TGG - tig0019129:94200-94219 None:intergenic 40.0%
TGGCACTCTTTATCACATGT+AGG + tig0019129:94288-94307 Msa1370490:intron 40.0%
CACATGTAGGAAACTGTTTG+AGG + tig0019129:94301-94320 Msa1370490:intron 40.0%
! GTAGCCAATTTTATCATGGC+TGG + tig0019129:94441-94460 Msa1370490:intron 40.0%
AGAGAGTAAGGAACTTGTAG+TGG - tig0019129:94613-94632 None:intergenic 40.0%
GAATGCACGCCAAATATCAA+AGG + tig0019129:94659-94678 Msa1370490:CDS 40.0%
! TGGGTGTATATGGGTTCTTT+TGG + tig0019129:94796-94815 Msa1370490:intron 40.0%
ATAATTGGGTATCCTTCACC+CGG + tig0019129:94820-94839 Msa1370490:intron 40.0%
GTCTCTTCCAAATTAACCAG+AGG - tig0019129:95031-95050 None:intergenic 40.0%
! CTGGTTAATTTGGAAGAGAC+CGG + tig0019129:95031-95050 Msa1370490:intron 40.0%
! AGTGTAATTCTGAGGGTTTG+GGG + tig0019129:95180-95199 Msa1370490:intron 40.0%
!! CTTTTGGAGAACACCTAACT+AGG + tig0019129:95296-95315 Msa1370490:intron 40.0%
ACTCTGCACAATTTGCATCA+CGG + tig0019129:95803-95822 Msa1370490:intron 40.0%
! CGTTGCAACTAACTTTTTGC+AGG + tig0019129:95836-95855 Msa1370490:intron 40.0%
! ATGAAGGAGTATATGACCGT+GGG - tig0019129:96039-96058 None:intergenic 40.0%
! ATCTGAAGCAACTAATGAGG+TGG - tig0019129:96086-96105 None:intergenic 40.0%
CTTCAGATTTCAGGAATGTG+TGG + tig0019129:96098-96117 Msa1370490:CDS 40.0%
GGAGAATTCCATCAAGAATG+AGG + tig0019129:96140-96159 Msa1370490:CDS 40.0%
TTGAGCATCCTCATTCTTGA+TGG - tig0019129:96151-96170 None:intergenic 40.0%
TGCTGTTGTATGAAGCTTTC+CGG + tig0019129:96360-96379 Msa1370490:three_prime_UTR 40.0%
GGATGGAAGCCTTAACAAAT+TGG + tig0019129:96381-96400 Msa1370490:three_prime_UTR 40.0%
TTTACTGATCCAGTGTTAGC+AGG + tig0019129:96451-96470 Msa1370490:three_prime_UTR 40.0%
! AGAGAGAGAAGGAAGAGTGT+GGG - tig0019129:92338-92357 None:intergenic 45.0%
AAGAGAGAGAAGGAAGAGTG+TGG - tig0019129:92339-92358 None:intergenic 45.0%
CGAGAAAATGCTGGGGAAAA+AGG - tig0019129:92371-92390 None:intergenic 45.0%
! AGGAACGTGTGTTATTACCG+TGG + tig0019129:92446-92465 Msa1370490:five_prime_UTR 45.0%
TAGCTGAAGAGAACCTCGAA+AGG - tig0019129:92530-92549 None:intergenic 45.0%
GTGTTAATGTCAGCTTCAGG+AGG + tig0019129:92915-92934 Msa1370490:exon 45.0%
!! ATGTTGCTGACTCAGAAGCA+AGG + tig0019129:92958-92977 Msa1370490:CDS 45.0%
!! GAACCTGTCTTATTTCCAGC+AGG - tig0019129:92996-93015 None:intergenic 45.0%
TGCTTCAAAGCCACTGAGAA+AGG + tig0019129:93034-93053 Msa1370490:CDS 45.0%
AAAGGCTGAGAAATTGGGCA+AGG + tig0019129:93052-93071 Msa1370490:CDS 45.0%
! ATTGGGCAAGGAGGTTGATT+TGG + tig0019129:93064-93083 Msa1370490:CDS 45.0%
TTTCATAGCCGAGCTTCTAC+TGG + tig0019129:93221-93240 Msa1370490:CDS 45.0%
GCTATGGTTTGACAAGGAAG+CGG + tig0019129:93264-93283 Msa1370490:CDS 45.0%
CCGTCAGAAACAACACTTCT+TGG - tig0019129:93302-93321 None:intergenic 45.0%
!! TGTTGTTTCTGACGGTGTGT+TGG + tig0019129:93307-93326 Msa1370490:CDS 45.0%
TTCTTGGATTGTGCACCATC+AGG - tig0019129:93344-93363 None:intergenic 45.0%
ATGGTGCACAATCCAAGAAG+AGG + tig0019129:93345-93364 Msa1370490:CDS 45.0%
! AATCCAAGAAGAGGTGTGCT+TGG + tig0019129:93354-93373 Msa1370490:CDS 45.0%
GGAGTGGAACAAACCAGTAT+TGG - tig0019129:93387-93406 None:intergenic 45.0%
! AAGAAGTACATGCCGCAAAC+TGG + tig0019129:93968-93987 Msa1370490:intron 45.0%
GAACTCCCCATTCTTCATCA+TGG - tig0019129:94178-94197 None:intergenic 45.0%
GTGCTCTATCTGAACTCACT+TGG + tig0019129:94339-94358 Msa1370490:CDS 45.0%
TGTCTCTTGCTTAGAATGGC+TGG - tig0019129:94365-94384 None:intergenic 45.0%
GCAGCCAGCCATGATAAAAT+TGG - tig0019129:94448-94467 None:intergenic 45.0%
CAGCAAAAACTTCCCTGCAA+AGG - tig0019129:94533-94552 None:intergenic 45.0%
GAGAAGAAGGTGATAACACC+AGG + tig0019129:94585-94604 Msa1370490:CDS 45.0%
AAGGAACTTGTAGTGGTTCC+TGG - tig0019129:94606-94625 None:intergenic 45.0%
CTCTCTGATCAGAAATTGCG+TGG + tig0019129:94627-94646 Msa1370490:CDS 45.0%
AAGGGATTTCTCTGCAGTTC+CGG - tig0019129:94842-94861 None:intergenic 45.0%
GGATTACTCTCTGCAGTTGT+GGG - tig0019129:94920-94939 None:intergenic 45.0%
CCAAATTAACCAGAGGCCAT+GGG - tig0019129:95024-95043 None:intergenic 45.0%
TCCAAATTAACCAGAGGCCA+TGG - tig0019129:95025-95044 None:intergenic 45.0%
GCGTTTGGATGAGATGATTC+CGG - tig0019129:95053-95072 None:intergenic 45.0%
TCATCTCATCCAAACGCTCT+TGG + tig0019129:95056-95075 Msa1370490:intron 45.0%
CATCTCATCCAAACGCTCTT+GGG + tig0019129:95057-95076 Msa1370490:intron 45.0%
!! GCTCTTGGGTTGGTGTATAT+GGG + tig0019129:95071-95090 Msa1370490:intron 45.0%
GTGATGTTACTAGCCGTTCT+AGG + tig0019129:95118-95137 Msa1370490:intron 45.0%
! ATGTTACTAGCCGTTCTAGG+TGG + tig0019129:95121-95140 Msa1370490:intron 45.0%
CAAACTGGCAACACATCAAG+CGG - tig0019129:95224-95243 None:intergenic 45.0%
GCTTGATGTGTTGCCAGTTT+GGG + tig0019129:95223-95242 Msa1370490:intron 45.0%
CTTGATGTGTTGCCAGTTTG+GGG + tig0019129:95224-95243 Msa1370490:intron 45.0%
TTGATGTGTTGCCAGTTTGG+GGG + tig0019129:95225-95244 Msa1370490:intron 45.0%
CACATACCAGCTAAGCATGT+TGG - tig0019129:95725-95744 None:intergenic 45.0%
! TTGCAGGTTTTACTGATGCC+AGG + tig0019129:95852-95871 Msa1370490:intron 45.0%
TGCCAGGTCATAGTAGAGTT+TGG + tig0019129:95868-95887 Msa1370490:intron 45.0%
GCCAGGTCATAGTAGAGTTT+GGG + tig0019129:95869-95888 Msa1370490:intron 45.0%
ACCCAAACTCTACTATGACC+TGG - tig0019129:95873-95892 None:intergenic 45.0%
!!! TGTTTTAACGGGAACCTGTC+GGG - tig0019129:95959-95978 None:intergenic 45.0%
!!! GTGTTTTAACGGGAACCTGT+CGG - tig0019129:95960-95979 None:intergenic 45.0%
! CATGAAGGAGTATATGACCG+TGG - tig0019129:96040-96059 None:intergenic 45.0%
GGTCATATACTCCTTCATGC+AGG + tig0019129:96041-96060 Msa1370490:CDS 45.0%
CATATACTCCTTCATGCAGG+TGG + tig0019129:96044-96063 Msa1370490:CDS 45.0%
GTTGTATGAAGCTTTCCGGA+TGG + tig0019129:96364-96383 Msa1370490:three_prime_UTR 45.0%
! GAGAGAGAAGGAAGAGTGTG+GGG - tig0019129:92337-92356 None:intergenic 50.0%
! AACGGAATCTTGGCCTTTCG+AGG + tig0019129:92514-92533 Msa1370490:five_prime_UTR 50.0%
CTTCAGGAGGTCCTAGATTG+AGG + tig0019129:92928-92947 Msa1370490:CDS 50.0%
TCAGAAGCAAGGCCTGTGTT+TGG + tig0019129:92969-92988 Msa1370490:CDS 50.0%
TTTCCAGCAGGACCAAACAC+AGG - tig0019129:92984-93003 None:intergenic 50.0%
GGTCCTGCTGGAAATAAGAC+AGG + tig0019129:92990-93009 Msa1370490:CDS 50.0%
ACACTGGCAGAATGTGACTG+AGG - tig0019129:93113-93132 None:intergenic 50.0%
GCGCAACACTGAAGAAACAC+TGG - tig0019129:93129-93148 None:intergenic 50.0%
TCGGCTATGAAACGAGTCTG+TGG - tig0019129:93213-93232 None:intergenic 50.0%
TTGGAATCTCCTCCTCCTGA+TGG + tig0019129:93326-93345 Msa1370490:CDS 50.0%
TTGGATTGTGCACCATCAGG+AGG - tig0019129:93341-93360 None:intergenic 50.0%
GATCCAAGCACACCTCTTCT+TGG - tig0019129:93360-93379 None:intergenic 50.0%
GCTTGGATCACTCCCAATAC+TGG + tig0019129:93371-93390 Msa1370490:CDS 50.0%
CAAGGAAATTGGGGAAGGAG+TGG - tig0019129:93403-93422 None:intergenic 50.0%
GCACACAGCCACACATATAC+AGG - tig0019129:93511-93530 None:intergenic 50.0%
TATGTGTGGCTGTGTGCCTT+TGG + tig0019129:93514-93533 Msa1370490:intron 50.0%
AGGGATTTCTCTGCAGTTCC+GGG - tig0019129:94841-94860 None:intergenic 50.0%
GGGATTACTCTCTGCAGTTG+TGG - tig0019129:94921-94940 None:intergenic 50.0%
!! CGGTGCTTCATTTTCAGGGT+TGG + tig0019129:94991-95010 Msa1370490:intron 50.0%
CAGGGTTGGATTTGAACCCA+TGG + tig0019129:95005-95024 Msa1370490:intron 50.0%
CCCATGGCCTCTGGTTAATT+TGG + tig0019129:95021-95040 Msa1370490:intron 50.0%
TCATCCAAACGCTCTTGGGT+TGG + tig0019129:95061-95080 Msa1370490:intron 50.0%
!! TACACCAACCCAAGAGCGTT+TGG - tig0019129:95068-95087 None:intergenic 50.0%
!! CGCTCTTGGGTTGGTGTATA+TGG + tig0019129:95070-95089 Msa1370490:intron 50.0%
CGCTTGATGTGTTGCCAGTT+TGG + tig0019129:95222-95241 Msa1370490:intron 50.0%
! CAGTTTGGGGGTTTTCCCTT+CGG + tig0019129:95237-95256 Msa1370490:intron 50.0%
! AGGTAATTGGGTTGTGGTCC+TGG + tig0019129:95573-95592 Msa1370490:intron 50.0%
AACCAGCCAACATGCTTAGC+TGG + tig0019129:95716-95735 Msa1370490:intron 50.0%
TACCAGCTAAGCATGTTGGC+TGG - tig0019129:95721-95740 None:intergenic 50.0%
CAAATTCCGATATCCCCGAC+AGG + tig0019129:95942-95961 Msa1370490:CDS 50.0%
!! GTTTTAACGGGAACCTGTCG+GGG - tig0019129:95958-95977 None:intergenic 50.0%
AGCAAAGACCTGGTGAGAAG+AGG + tig0019129:95997-96016 Msa1370490:CDS 50.0%
ATACTCCTTCATGCAGGTGG+TGG + tig0019129:96047-96066 Msa1370490:CDS 50.0%
TACTCCTTCATGCAGGTGGT+GGG + tig0019129:96048-96067 Msa1370490:CDS 50.0%
AATGTGTGGCTGCAGCAGAA+GGG + tig0019129:96112-96131 Msa1370490:CDS 50.0%
ACCTCAAAAGGTTGGCGCCA+CGG - tig0019129:92466-92485 None:intergenic 55.0%
GGGTCACTTCATTGTGCACC+AGG + tig0019129:92722-92741 Msa1370490:five_prime_UTR 55.0%
GGCTGAGAAATTGGGCAAGG+AGG + tig0019129:93055-93074 Msa1370490:CDS 55.0%
GATTGTGCACCATCAGGAGG+AGG - tig0019129:93338-93357 None:intergenic 55.0%
TGTGGCTGTGTGCCTTTGGT+AGG + tig0019129:93518-93537 Msa1370490:intron 55.0%
TTCTCTGCAGTTCCGGGTGA+AGG - tig0019129:94835-94854 None:intergenic 55.0%
TCTCTGCAGTTGTGGGCGAA+GGG - tig0019129:94913-94932 None:intergenic 55.0%
GGATTTGAACCCATGGCCTC+TGG + tig0019129:95012-95031 Msa1370490:intron 55.0%
CGAAGGGAAAACCCCCAAAC+TGG - tig0019129:95239-95258 None:intergenic 55.0%
CTGGTGAGAAGAGGTTTCCG+CGG + tig0019129:96006-96025 Msa1370490:CDS 55.0%
AGAAGAGGTTTCCGCGGTGT+GGG + tig0019129:96012-96031 Msa1370490:CDS 55.0%
ACTCCTTCATGCAGGTGGTG+GGG + tig0019129:96049-96068 Msa1370490:CDS 55.0%
TAACCCCACCACCTGCATGA+AGG - tig0019129:96055-96074 None:intergenic 55.0%
GAATGTGTGGCTGCAGCAGA+AGG + tig0019129:96111-96130 Msa1370490:CDS 55.0%
! ACCGTGGCGCCAACCTTTTG+AGG + tig0019129:92462-92481 Msa1370490:five_prime_UTR 60.0%
AGGCCTGTGTTTGGTCCTGC+TGG + tig0019129:92978-92997 Msa1370490:CDS 60.0%
CTCTCTGCAGTTGTGGGCGA+AGG - tig0019129:94914-94933 None:intergenic 60.0%
CGGGAACCTGTCGGGGATAT+CGG - tig0019129:95951-95970 None:intergenic 60.0%
CGCGGAAACCTCTTCTCACC+AGG - tig0019129:96008-96027 None:intergenic 60.0%
GAGAAGAGGTTTCCGCGGTG+TGG + tig0019129:96011-96030 Msa1370490:CDS 60.0%
TGTGGCTGCAGCAGAAGGGA+AGG + tig0019129:96116-96135 Msa1370490:CDS 60.0%
TTTCCGCGGTGTGGGTCCCA+CGG + tig0019129:96020-96039 Msa1370490:CDS 65.0%
GGCTGCAGCAGAAGGGAAGG+TGG + tig0019129:96119-96138 Msa1370490:CDS 65.0%
TGACCGTGGGACCCACACCG+CGG - tig0019129:96026-96045 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0019129 gene 92291 96569 92291 ID=Msa1370490;Name=Msa1370490
tig0019129 mRNA 92291 96569 92291 ID=Msa1370490-mRNA-1;Parent=Msa1370490;Name=Msa1370490-mRNA-1;_AED=0.08;_eAED=0.08;_QI=630|1|1|1|1|1|5|324|375
tig0019129 exon 92291 93392 92291 ID=Msa1370490-mRNA-1:exon:1687;Parent=Msa1370490-mRNA-1
tig0019129 exon 94156 94213 94156 ID=Msa1370490-mRNA-1:exon:1688;Parent=Msa1370490-mRNA-1
tig0019129 exon 94310 94393 94310 ID=Msa1370490-mRNA-1:exon:1689;Parent=Msa1370490-mRNA-1
tig0019129 exon 94539 94680 94539 ID=Msa1370490-mRNA-1:exon:1690;Parent=Msa1370490-mRNA-1
tig0019129 exon 95874 96569 95874 ID=Msa1370490-mRNA-1:exon:1691;Parent=Msa1370490-mRNA-1
tig0019129 five_prime_UTR 92291 92920 92291 ID=Msa1370490-mRNA-1:five_prime_utr;Parent=Msa1370490-mRNA-1
tig0019129 CDS 92921 93392 92921 ID=Msa1370490-mRNA-1:cds;Parent=Msa1370490-mRNA-1
tig0019129 CDS 94156 94213 94156 ID=Msa1370490-mRNA-1:cds;Parent=Msa1370490-mRNA-1
tig0019129 CDS 94310 94393 94310 ID=Msa1370490-mRNA-1:cds;Parent=Msa1370490-mRNA-1
tig0019129 CDS 94539 94680 94539 ID=Msa1370490-mRNA-1:cds;Parent=Msa1370490-mRNA-1
tig0019129 CDS 95874 96245 95874 ID=Msa1370490-mRNA-1:cds;Parent=Msa1370490-mRNA-1
tig0019129 three_prime_UTR 96246 96569 96246 ID=Msa1370490-mRNA-1:three_prime_utr;Parent=Msa1370490-mRNA-1
Gene Sequence

>Msa1370490

ATGTCAGCTTCAGGAGGTCCTAGATTGAGGTCTATGAATGTTGCTGACTCAGAAGCAAGGCCTGTGTTTGGTCCTGCTGGAAATAAGACAGGTTCTTATAGTTCTAGAAAAGATGCTTCAAAGCCACTGAGAAAGGCTGAGAAATTGGGCAAGGAGGTTGATTTGGCCAAAGAGAAGAAAGATGCTTCTCCTCAGTCACATTCTGCCAGTGTTTCTTCAGTGTTGCGCCGACATGAGCAGTTGTTGCATTCTAATTTGTCGATGAATGCTTCGTGTTCTTCGGATGCATCCACAGACTCGTTTCATAGCCGAGCTTCTACTGGAAGATTGACTCGGTCTAATAGCTATGGTTTGACAAGGAAGCGGTCAGTGTCGAAGCCAAGAAGTGTTGTTTCTGACGGTGTGTTGGAATCTCCTCCTCCTGATGGTGCACAATCCAAGAAGAGGTGTGCTTGGATCACTCCCAATACTGAGCCATATTATGCTGCTTTCCATGATGAAGAATGGGGAGTTCCAGTACATGACGACAAGAAACTGTTTGAGGTTCTTGTTCTTTCGAGTGCTCTATCTGAACTCACTTGGCCAGCCATTCTAAGCAAGAGACACATTTTTAGGGAAGTTTTTGCTGACTTTGATCCAGTTGCTGTCTCAAAATTAAATGAGAAGAAGGTGATAACACCAGGAACCACTACAAGTTCCTTACTCTCTGATCAGAAATTGCGTGGAATAATTGAGAATGCACGCCAAATATCAAAGGTCATAGTAGAGTTTGGGTCATTCGACAATTACATTTGGAGTTTTGTGAACCACAAGCCTATACTTAGCAAATTCCGATATCCCCGACAGGTTCCCGTTAAAACACCAAAAGCTGAAGTTATTAGCAAAGACCTGGTGAGAAGAGGTTTCCGCGGTGTGGGTCCCACGGTCATATACTCCTTCATGCAGGTGGTGGGGTTAACTAATGACCACCTCATTAGTTGCTTCAGATTTCAGGAATGTGTGGCTGCAGCAGAAGGGAAGGTGGAGAATTCCATCAAGAATGAGGATGCTCAACCAAATGCATGTGATAGTGTGATGGAATCTGATCTTTCCATTGCCATTGATAATTTGAGTTTGTCCTCAGAATGA
Protein sequence

>Msa1370490

MSASGGPRLRSMNVADSEARPVFGPAGNKTGSYSSRKDASKPLRKAEKLGKEVDLAKEKKDASPQSHSASVSSVLRRHEQLLHSNLSMNASCSSDASTDSFHSRASTGRLTRSNSYGLTRKRSVSKPRSVVSDGVLESPPPDGAQSKKRCAWITPNTEPYYAAFHDEEWGVPVHDDKKLFEVLVLSSALSELTWPAILSKRHIFREVFADFDPVAVSKLNEKKVITPGTTTSSLLSDQKLRGIIENARQISKVIVEFGSFDNYIWSFVNHKPILSKFRYPRQVPVKTPKAEVISKDLVRRGFRGVGPTVIYSFMQVVGLTNDHLISCFRFQECVAAAEGKVENSIKNEDAQPNACDSVMESDLSIAIDNLSLSSE*