AlfalfaGEDB | Msa1384000

M. sativa cultivar zhongmu-4 / Msa1384000

KEGG: K01246
GO: -
PFAM: PF03352.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384000	XP_003610321.1	98.667	375	5	0	1	375	1	375	0.0	760

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384000	sp\|Q7VG78\|GUAA_HELHP	44.503	191	103	1	142	329	780	970	5.08e-47	175

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384000	G7JGQ1	98.667	375	5	0	1	375	1	375	0.0	760

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1337880	Msa1384000	0.859807	3.202475e-63	-8.615850e-47
Msa1370490	Msa1384000	0.994298	3.981896e-206	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384000	MtrunA17_Chr4g0073991	98.667	375	5	0	1	375	1	375	0.0	760
Msa1384000	MtrunA17_Chr4g0001371	52.699	389	141	9	4	374	2	365	3.56e-118	347
Msa1384000	MtrunA17_Chr3g0141411	53.942	241	101	2	107	346	96	327	1.56e-95	288
Msa1384000	MtrunA17_Chr5g0420791	54.450	191	87	0	148	338	112	302	6.47e-79	244
Msa1384000	MtrunA17_Chr8g0366071	51.546	194	91	1	148	338	116	309	5.91e-74	232
Msa1384000	MtrunA17_Chr2g0309681	52.332	193	90	1	145	337	198	388	4.66e-70	224
Msa1384000	MtrunA17_Chr8g0356301	51.579	190	90	1	145	334	192	379	1.03e-69	223

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384000	AT5G57970.1	63.112	347	118	2	4	341	2	347	2.42e-156	444
Msa1384000	AT5G57970.2	63.112	347	118	2	4	341	2	347	2.42e-156	444
Msa1384000	AT1G15970.1	52.367	338	148	4	7	338	5	335	5.26e-108	321
Msa1384000	AT1G15970.2	52.367	338	148	4	7	338	5	335	5.26e-108	321
Msa1384000	AT1G80850.1	50.867	346	136	7	4	338	2	324	3.18e-104	310
Msa1384000	AT1G75090.1	59.686	191	77	0	148	338	119	309	8.83e-87	266
Msa1384000	AT1G13635.2	48.691	191	98	0	148	338	115	305	2.18e-72	228
Msa1384000	AT1G13635.1	48.691	191	98	0	148	338	115	305	2.18e-72	228
Msa1384000	AT3G12710.1	50.000	190	93	1	148	337	122	309	2.27e-66	213
Msa1384000	AT5G44680.1	49.495	198	88	2	145	337	161	351	5.55e-66	213

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Find 141 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCTGAGAAATTGGGCA+AGG	0.650312	tig0020633:+49850	Msa1384000:CDS
AAATGCATGTGATAGTGTGA+TGG	0.629136	tig0020633:+52971	Msa1384000:CDS
AACAATGCAGAACGGAATCT+TGG	0.379953	tig0020633:+49302	Msa1384000:five_prime_UTR
AACACAAATCTTTCTAATTT+AGG	0.190089	tig0020633:-49695	None:intergenic
AACGGAATCTTGGCCTTTCG+AGG	0.448830	tig0020633:+49312	Msa1384000:five_prime_UTR
AACTTCAATGCTACCTCAAA+AGG	0.451783	tig0020633:-49273	None:intergenic
AAGGAACTTGTAGTGGTTCC+TGG	0.388803	tig0020633:-51401	None:intergenic
AATCCAAGAAGAGGTGTGCT+TGG	0.508627	tig0020633:+50152	Msa1384000:CDS
AATGCAACAACTGCTCATGT+CGG	0.657461	tig0020633:-49946	None:intergenic
AATGTGTCTCTTGCTTAGAA+TGG	0.523823	tig0020633:-51164	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATTCATGAACTCTTCTTA+AGG	+	tig0020633:49224-49243	Msa1384000:five_prime_UTR	30.0%
GCTGATTGGATTTAAGAAAA+TGG	-	tig0020633:49408-49427	None:intergenic	30.0%
TATAAAAGGTTGAAGCTGAT+TGG	-	tig0020633:49422-49441	None:intergenic	30.0%
TTAAACACATAATTATGCCC+CGG	-	tig0020633:50267-50286	None:intergenic	30.0%
CTGAATTGCTTTCACATATA+TGG	+	tig0020633:50374-50393	Msa1384000:intron	30.0%
AATTGCTTTCACATATATGG+CGG	+	tig0020633:50377-50396	Msa1384000:intron	30.0%
GTAGTTTAATCTCATTCATC+TGG	+	tig0020633:50402-50421	Msa1384000:intron	30.0%
TCAAATATTCATTCGTGCAA+TGG	+	tig0020633:50641-50660	Msa1384000:intron	30.0%
CAAATATTCATTCGTGCAAT+GGG	+	tig0020633:50642-50661	Msa1384000:intron	30.0%
ATTGATCTATATCCAGTTTG+CGG	-	tig0020633:50781-50800	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020633	gene	49087	53372	49087	ID=Msa1384000;Name=Msa1384000
tig0020633	mRNA	49087	53372	49087	ID=Msa1384000-mRNA-1;Parent=Msa1384000;Name=Msa1384000-mRNA-1;_AED=0.08;_eAED=0.08;_QI=632\|1\|1\|1\|1\|1\|5\|329\|375
tig0020633	exon	49087	50190	49087	ID=Msa1384000-mRNA-1:exon:8882;Parent=Msa1384000-mRNA-1
tig0020633	exon	50954	51011	50954	ID=Msa1384000-mRNA-1:exon:8883;Parent=Msa1384000-mRNA-1
tig0020633	exon	51108	51191	51108	ID=Msa1384000-mRNA-1:exon:8884;Parent=Msa1384000-mRNA-1
tig0020633	exon	51337	51478	51337	ID=Msa1384000-mRNA-1:exon:8885;Parent=Msa1384000-mRNA-1
tig0020633	exon	52672	53372	52672	ID=Msa1384000-mRNA-1:exon:8886;Parent=Msa1384000-mRNA-1
tig0020633	five_prime_UTR	49087	49718	49087	ID=Msa1384000-mRNA-1:five_prime_utr;Parent=Msa1384000-mRNA-1
tig0020633	CDS	49719	50190	49719	ID=Msa1384000-mRNA-1:cds;Parent=Msa1384000-mRNA-1
tig0020633	CDS	50954	51011	50954	ID=Msa1384000-mRNA-1:cds;Parent=Msa1384000-mRNA-1
tig0020633	CDS	51108	51191	51108	ID=Msa1384000-mRNA-1:cds;Parent=Msa1384000-mRNA-1
tig0020633	CDS	51337	51478	51337	ID=Msa1384000-mRNA-1:cds;Parent=Msa1384000-mRNA-1
tig0020633	CDS	52672	53043	52672	ID=Msa1384000-mRNA-1:cds;Parent=Msa1384000-mRNA-1
tig0020633	three_prime_UTR	53044	53372	53044	ID=Msa1384000-mRNA-1:three_prime_utr;Parent=Msa1384000-mRNA-1

Gene Sequence

>Msa1384000

ATGTCAGCTTCAGGAGGTCCTAGATTGAGGTCTATGAATGTTGCTGACTCAGAAGCAAGGCCTGTGTTTGGTCCTGCTGGAAATAAGACAGGTTCTTATAGTTCTAGAAAAGATGCTTCAAAGCCACTGAGAAAGGCTGAGAAATTGGGCAAGGAGGTTGATTTGGCCAAAGAGAAGAAAGATGCTTCTCCTCAGTCACATTCTGCCAGTGTTTCTTCAGTGTTGCGCCGACATGAGCAGTTGTTGCATTCTAATTTGTCGATGAATGCTTCGTGTTCTTCGGATGCATCCACAGACTCGTTTCATAGCCGAGCTTCTACTGGAAGATTGACTCGGTCTAATAGCTATGGTTTGACAAGGAAGCGGTCAGTGTCGAAGCCAAGAAGTGTTGTTTCTGACGGTGTGTTGGAATCTCCTCCTCCTGATGGTGCACAATCCAAGAAGAGGTGTGCTTGGATCACTCCCAATACTGAGCCATATTATGCTGCTTTCCATGATGAAGAATGGGGAGTTCCAGTACATGACGACAAGAAACTGTTTGAGGTTCTTGTTCTTTCGAGTGCTCTATCTGAACTCACTTGGCCAGCCATTCTAAGCAAGAGACACATTTTTAGGGAAGTTTTTGCTGACTTTGATCCAGTTGCTGTCTCAAAATTAAATGAGAAGAAGGTGATAACACCAGGAACCACTACAAGTTCCTTACTCTCTGATCAGAAATTGCGTGGAATAATTGAGAATGCACGCCAAATATCAAAGGTCATAGTAGAGTTTGGGTCATTCGACAATTACATTTGGAGTTTTGTGAACCACAAGCCTATACTTAGCAAATTCCGATATCCCCGACAGGTTCCCGTTAAAACACCAAAAGCTGAAGTTATTAGCAAAGACCTGGTGAGAAGAGGTTTCCGCGGTGTGGGTCCCACGGTCATATACTCCTTCATGCAGGTGGTGGGGTTAACTAATGACCACCTCATTAGTTGCTTCAGATTTCAGGAATGTGTGGCTGCAGCAGAAGGGAAGGTGGAGAATTCCATCAAGAATGAGGATGCTCAACCAAATGCATGTGATAGTGTGATGGAATCTGATCTTTCCATTGCCATTGATAATTTGAGTTTGTCCTCAGAATGA

Protein sequence

>Msa1384000

MSASGGPRLRSMNVADSEARPVFGPAGNKTGSYSSRKDASKPLRKAEKLGKEVDLAKEKKDASPQSHSASVSSVLRRHEQLLHSNLSMNASCSSDASTDSFHSRASTGRLTRSNSYGLTRKRSVSKPRSVVSDGVLESPPPDGAQSKKRCAWITPNTEPYYAAFHDEEWGVPVHDDKKLFEVLVLSSALSELTWPAILSKRHIFREVFADFDPVAVSKLNEKKVITPGTTTSSLLSDQKLRGIIENARQISKVIVEFGSFDNYIWSFVNHKPILSKFRYPRQVPVKTPKAEVISKDLVRRGFRGVGPTVIYSFMQVVGLTNDHLISCFRFQECVAAAEGKVENSIKNEDAQPNACDSVMESDLSIAIDNLSLSSE*