AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1384000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384000 MtrunA17_Chr4g0073991 98.667 375 5 0 1 375 1 375 0.0 760
Msa1384000 MtrunA17_Chr4g0001371 52.699 389 141 9 4 374 2 365 3.56e-118 347
Msa1384000 MtrunA17_Chr3g0141411 53.942 241 101 2 107 346 96 327 1.56e-95 288
Msa1384000 MtrunA17_Chr5g0420791 54.450 191 87 0 148 338 112 302 6.47e-79 244
Msa1384000 MtrunA17_Chr8g0366071 51.546 194 91 1 148 338 116 309 5.91e-74 232
Msa1384000 MtrunA17_Chr2g0309681 52.332 193 90 1 145 337 198 388 4.66e-70 224
Msa1384000 MtrunA17_Chr8g0356301 51.579 190 90 1 145 334 192 379 1.03e-69 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384000 AT5G57970.1 63.112 347 118 2 4 341 2 347 2.42e-156 444
Msa1384000 AT5G57970.2 63.112 347 118 2 4 341 2 347 2.42e-156 444
Msa1384000 AT1G15970.1 52.367 338 148 4 7 338 5 335 5.26e-108 321
Msa1384000 AT1G15970.2 52.367 338 148 4 7 338 5 335 5.26e-108 321
Msa1384000 AT1G80850.1 50.867 346 136 7 4 338 2 324 3.18e-104 310
Msa1384000 AT1G75090.1 59.686 191 77 0 148 338 119 309 8.83e-87 266
Msa1384000 AT1G13635.2 48.691 191 98 0 148 338 115 305 2.18e-72 228
Msa1384000 AT1G13635.1 48.691 191 98 0 148 338 115 305 2.18e-72 228
Msa1384000 AT3G12710.1 50.000 190 93 1 148 337 122 309 2.27e-66 213
Msa1384000 AT5G44680.1 49.495 198 88 2 145 337 161 351 5.55e-66 213

Find 141 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAATATACCTTTGATATT+TGG 0.167727 tig0020633:-51466 None:intergenic
CATTAGTTGCTTCAGATTTC+AGG 0.175137 tig0020633:+52887 Msa1384000:CDS
AACACAAATCTTTCTAATTT+AGG 0.190089 tig0020633:-49695 None:intergenic
GCTGATTGGATTTAAGAAAA+TGG 0.195009 tig0020633:-49405 None:intergenic
ATTTCTTTGAAACCCAAAAT+TGG 0.214254 tig0020633:-49447 None:intergenic
ACTGAGAAAGGCTGAGAAAT+TGG 0.233316 tig0020633:+49844 Msa1384000:CDS
GATCCAAGCACACCTCTTCT+TGG 0.242214 tig0020633:-50155 None:intergenic
AGAAGCATCTTTCTTCTCTT+TGG 0.257673 tig0020633:-49885 None:intergenic
CGAGAAAATGCTGGGGAAAA+AGG 0.273608 tig0020633:-49166 None:intergenic
TGCTGTTGTATGAAGCTTTC+CGG 0.274511 tig0020633:+53158 Msa1384000:three_prime_UTR
CGGGAACCTGTCGGGGATAT+CGG 0.276657 tig0020633:-52746 None:intergenic
TTGCTAATAACTTCAGCTTT+TGG 0.286287 tig0020633:-52777 None:intergenic
CCGTCAGAAACAACACTTCT+TGG 0.294148 tig0020633:-50097 None:intergenic
TTCATTTCATTTCATTATAC+AGG 0.297306 tig0020633:+53293 Msa1384000:three_prime_UTR
GGATGGAAGCCTTAACAAAT+TGG 0.319021 tig0020633:+53179 Msa1384000:three_prime_UTR
CAAAATTGGAAACCTATAAA+AGG 0.320600 tig0020633:-49433 None:intergenic
ATTGGGCAAGGAGGTTGATT+TGG 0.323664 tig0020633:+49862 Msa1384000:CDS
CTGATTGGATTTAAGAAAAT+GGG 0.336198 tig0020633:-49404 None:intergenic
TGAAGAGAGAGAAGGAAGTA+GGG 0.343597 tig0020633:-49136 None:intergenic
TTGAGCATCCTCATTCTTGA+TGG 0.348083 tig0020633:-52946 None:intergenic
TATAAAAGGTTGAAGCTGAT+TGG 0.349710 tig0020633:-49419 None:intergenic
TGGAAGCAAAATTAGGGTTT+AGG 0.358709 tig0020633:-49372 None:intergenic
GTTCAGTTTGGTTCAGTTTG+TGG 0.361492 tig0020633:+49081 None:intergenic
CGGTGATTGATTGTGTGTAT+TGG 0.369419 tig0020633:+49660 Msa1384000:five_prime_UTR
TCATGGAAAGCAGCATAATA+TGG 0.372996 tig0020633:-50956 None:intergenic
TGCCAGGTCATAGTAGAGTT+TGG 0.373213 tig0020633:+52666 Msa1384000:intron
TTTGTGTTAATGTCAGCTTC+AGG 0.378827 tig0020633:+49710 Msa1384000:exon
GATGAATGCTTCGTGTTCTT+CGG 0.379133 tig0020633:+49979 Msa1384000:CDS
AACAATGCAGAACGGAATCT+TGG 0.379953 tig0020633:+49302 Msa1384000:five_prime_UTR
GGTCATTCGACAATTACATT+TGG 0.384849 tig0020633:+52688 Msa1384000:CDS
AAGGAACTTGTAGTGGTTCC+TGG 0.388803 tig0020633:-51401 None:intergenic
AGAATGAATCACAGTAAATC+TGG 0.393677 tig0020633:+53037 Msa1384000:exon
TTCTTGGATTGTGCACCATC+AGG 0.399421 tig0020633:-50139 None:intergenic
AATTCTACACCAATTTGTTA+AGG 0.403877 tig0020633:-53188 None:intergenic
TTTCATAGCCGAGCTTCTAC+TGG 0.408353 tig0020633:+50019 Msa1384000:CDS
ATCACACTATCACATGCATT+TGG 0.411863 tig0020633:-52969 None:intergenic
GTAAATCTGGTAGATCAAAT+AGG 0.412334 tig0020633:+53050 Msa1384000:three_prime_UTR
AGGCCTGTGTTTGGTCCTGC+TGG 0.417888 tig0020633:+49776 Msa1384000:CDS
GCTTGGATCACTCCCAATAC+TGG 0.420323 tig0020633:+50169 Msa1384000:CDS
ATGAAGAGAGAGAAGGAAGT+AGG 0.420681 tig0020633:-49137 None:intergenic
GAGTGGAACAAACCAGTATT+GGG 0.425297 tig0020633:-50181 None:intergenic
CTGAGAAAGGCTGAGAAATT+GGG 0.429522 tig0020633:+49845 Msa1384000:CDS
CTGAGATTGAGTTATATTTG+AGG 0.439299 tig0020633:+53090 Msa1384000:three_prime_UTR
GCCAGGTCATAGTAGAGTTT+GGG 0.439992 tig0020633:+52667 Msa1384000:intron
CTCAAATATAACTCAATCTC+AGG 0.441220 tig0020633:-53089 None:intergenic
TTGTGTATCAATCTCAAAGA+AGG 0.444043 tig0020633:+53118 Msa1384000:three_prime_UTR
ATACTCCTTCATGCAGGTGG+TGG 0.445350 tig0020633:+52845 Msa1384000:CDS
TGCTTTCCATGATGAAGAAT+GGG 0.446554 tig0020633:+50967 Msa1384000:CDS
AACGGAATCTTGGCCTTTCG+AGG 0.448830 tig0020633:+49312 Msa1384000:five_prime_UTR
AACTTCAATGCTACCTCAAA+AGG 0.451783 tig0020633:-49273 None:intergenic
AGATTCATGAACTCTTCTTA+AGG 0.455774 tig0020633:+49224 Msa1384000:five_prime_UTR
CTCAAAATTAAATGAGAAGA+AGG 0.457503 tig0020633:+51370 Msa1384000:CDS
TACTCCTTCATGCAGGTGGT+GGG 0.461248 tig0020633:+52846 Msa1384000:CDS
GGGTCACTTCATTGTGCACC+AGG 0.462816 tig0020633:+49520 Msa1384000:five_prime_UTR
ACATACTTGTCGTCATGTAC+TGG 0.466966 tig0020633:-50995 None:intergenic
TGCTTCAAAGCCACTGAGAA+AGG 0.468747 tig0020633:+49832 Msa1384000:CDS
GGAGTGGAACAAACCAGTAT+TGG 0.477722 tig0020633:-50182 None:intergenic
TTTACTGATCCAGTGTTAGC+AGG 0.482725 tig0020633:+53249 Msa1384000:three_prime_UTR
TCAGAAGCAAGGCCTGTGTT+TGG 0.484933 tig0020633:+49767 Msa1384000:CDS
CACATGTAGGAAACTGTTTG+AGG 0.486819 tig0020633:+51099 Msa1384000:intron
TTGGAATCTCCTCCTCCTGA+TGG 0.488289 tig0020633:+50124 Msa1384000:CDS
TATCGGAATTTGCTAAGTAT+AGG 0.490240 tig0020633:-52729 None:intergenic
AGAAGAGGTTTCCGCGGTGT+GGG 0.494446 tig0020633:+52810 Msa1384000:CDS
ACATTCATAGACCTCAATCT+AGG 0.495280 tig0020633:-49737 None:intergenic
GAATGTGTGGCTGCAGCAGA+AGG 0.497985 tig0020633:+52909 Msa1384000:CDS
TGTCTCTTGCTTAGAATGGC+TGG 0.501678 tig0020633:-51160 None:intergenic
TTCCGTTCTGCATTGTTGAA+AGG 0.504358 tig0020633:-49296 None:intergenic
CTGCTTTCCATGATGAAGAA+TGG 0.506293 tig0020633:+50966 Msa1384000:CDS
CAATTTCTGATCAGAGAGTA+AGG 0.506313 tig0020633:-51420 None:intergenic
AATCCAAGAAGAGGTGTGCT+TGG 0.508627 tig0020633:+50152 Msa1384000:CDS
CGCGGAAACCTCTTCTCACC+AGG 0.511916 tig0020633:-52803 None:intergenic
TGATTGATTGTGTGTATTGG+TGG 0.514796 tig0020633:+49663 Msa1384000:five_prime_UTR
TTGACTCGGTCTAATAGCTA+TGG 0.521589 tig0020633:+50046 Msa1384000:CDS
GAACCTGTCTTATTTCCAGC+AGG 0.522965 tig0020633:-49791 None:intergenic
AATGTGTCTCTTGCTTAGAA+TGG 0.523823 tig0020633:-51164 None:intergenic
GATTGATTGTGTGTATTGGT+GGG 0.528265 tig0020633:+49664 Msa1384000:five_prime_UTR
GGTCCTGCTGGAAATAAGAC+AGG 0.532123 tig0020633:+49788 Msa1384000:CDS
TGTTGTTTCTGACGGTGTGT+TGG 0.536773 tig0020633:+50105 Msa1384000:CDS
GGACAAACTCAAATTATCAA+TGG 0.537441 tig0020633:-53012 None:intergenic
ACTCAAATTATCAATGGCAA+TGG 0.539519 tig0020633:-53006 None:intergenic
ACCTCAAAAGGTTGGCGCCA+CGG 0.539586 tig0020633:-49261 None:intergenic
CTTCAGATTTCAGGAATGTG+TGG 0.546257 tig0020633:+52896 Msa1384000:CDS
CTTCAGGAGGTCCTAGATTG+AGG 0.547316 tig0020633:+49726 Msa1384000:CDS
ATTTACTGTGATTCATTCTG+AGG 0.549011 tig0020633:-53033 None:intergenic
GAGAAGAGGTTTCCGCGGTG+TGG 0.552325 tig0020633:+52809 Msa1384000:CDS
GAACTCCCCATTCTTCATCA+TGG 0.554190 tig0020633:-50973 None:intergenic
TTTCAAAAGGGTGTGTAGTG+AGG 0.554978 tig0020633:+49614 Msa1384000:five_prime_UTR
TTTCCGCGGTGTGGGTCCCA+CGG 0.558212 tig0020633:+52818 Msa1384000:CDS
ATTTGCTAAGTATAGGCTTG+TGG 0.560857 tig0020633:-52722 None:intergenic
CCAAGAAGTGTTGTTTCTGA+CGG 0.562851 tig0020633:+50097 Msa1384000:CDS
GAAGAGAGAGAAGGAAGTAG+GGG 0.563226 tig0020633:-49135 None:intergenic
TGTGTATCAATCTCAAAGAA+GGG 0.565652 tig0020633:+53119 Msa1384000:three_prime_UTR
CTCTCTGATCAGAAATTGCG+TGG 0.565696 tig0020633:+51425 Msa1384000:CDS
AATTTGTTAAGGCTTCCATC+CGG 0.568096 tig0020633:-53177 None:intergenic
GATGAAAATGAAGAGAGAGA+AGG 0.570404 tig0020633:-49144 None:intergenic
ACTCCTTCATGCAGGTGGTG+GGG 0.578093 tig0020633:+52847 Msa1384000:CDS
GAAATCTGAAGCAACTAATG+AGG 0.581296 tig0020633:-52884 None:intergenic
CAAATTCCGATATCCCCGAC+AGG 0.584407 tig0020633:+52740 Msa1384000:CDS
AGCAAAGACCTGGTGAGAAG+AGG 0.585041 tig0020633:+52795 Msa1384000:CDS
GTGCTCTATCTGAACTCACT+TGG 0.585688 tig0020633:+51137 Msa1384000:CDS
TCAATCTTCCAGTAGAAGCT+CGG 0.588776 tig0020633:-50027 None:intergenic
GGAGAATTCCATCAAGAATG+AGG 0.588997 tig0020633:+52938 Msa1384000:CDS
TCAATGCTACCTCAAAAGGT+TGG 0.594649 tig0020633:-49269 None:intergenic
AATTTCTCAGCCTTTCTCAG+TGG 0.596074 tig0020633:-49842 None:intergenic
TTGGATTGTGCACCATCAGG+AGG 0.596535 tig0020633:-50136 None:intergenic
ATCTGAAGCAACTAATGAGG+TGG 0.598594 tig0020633:-52881 None:intergenic
GTGTTAATGTCAGCTTCAGG+AGG 0.603358 tig0020633:+49713 Msa1384000:exon
CTTCTACTGGAAGATTGACT+CGG 0.603962 tig0020633:+50032 Msa1384000:CDS
GGCTGCAGCAGAAGGGAAGG+TGG 0.608615 tig0020633:+52917 Msa1384000:CDS
GATTGTGCACCATCAGGAGG+AGG 0.608674 tig0020633:-50133 None:intergenic
TATCTATTACCTGCTAACAC+TGG 0.609178 tig0020633:-53258 None:intergenic
AGAGAGTAAGGAACTTGTAG+TGG 0.609547 tig0020633:-51408 None:intergenic
TAACCCCACCACCTGCATGA+AGG 0.610546 tig0020633:-52850 None:intergenic
GAATGCACGCCAAATATCAA+AGG 0.612654 tig0020633:+51457 Msa1384000:CDS
GGTCATATACTCCTTCATGC+AGG 0.616386 tig0020633:+52839 Msa1384000:CDS
CATATACTCCTTCATGCAGG+TGG 0.620564 tig0020633:+52842 Msa1384000:CDS
CTAATAGCTATGGTTTGACA+AGG 0.620795 tig0020633:+50056 Msa1384000:CDS
TTCCTTTCAACAATGCAGAA+CGG 0.621013 tig0020633:+49294 Msa1384000:five_prime_UTR
AAATGCATGTGATAGTGTGA+TGG 0.629136 tig0020633:+52971 Msa1384000:CDS
AATGTGTGGCTGCAGCAGAA+GGG 0.629409 tig0020633:+52910 Msa1384000:CDS
TGAAGTTATTAGCAAAGACC+TGG 0.634551 tig0020633:+52785 Msa1384000:CDS
GGCTGAGAAATTGGGCAAGG+AGG 0.635303 tig0020633:+49853 Msa1384000:CDS
GCTATGGTTTGACAAGGAAG+CGG 0.636905 tig0020633:+50062 Msa1384000:CDS
TAGCTGAAGAGAACCTCGAA+AGG 0.638602 tig0020633:-49325 None:intergenic
ATGGTGCACAATCCAAGAAG+AGG 0.638802 tig0020633:+50143 Msa1384000:CDS
GAGAAGAAGGTGATAACACC+AGG 0.639020 tig0020633:+51383 Msa1384000:CDS
TTTCCAGCAGGACCAAACAC+AGG 0.641381 tig0020633:-49779 None:intergenic
GCGCAACACTGAAGAAACAC+TGG 0.647990 tig0020633:-49924 None:intergenic
ATGTTGCTGACTCAGAAGCA+AGG 0.650117 tig0020633:+49756 Msa1384000:CDS
TCGGCTATGAAACGAGTCTG+TGG 0.650238 tig0020633:-50008 None:intergenic
AAAGGCTGAGAAATTGGGCA+AGG 0.650312 tig0020633:+49850 Msa1384000:CDS
ATGAAGGAGTATATGACCGT+GGG 0.650909 tig0020633:-52834 None:intergenic
GTTGTATGAAGCTTTCCGGA+TGG 0.655464 tig0020633:+53162 Msa1384000:three_prime_UTR
TGTGGCTGCAGCAGAAGGGA+AGG 0.656234 tig0020633:+52914 Msa1384000:CDS
AATGCAACAACTGCTCATGT+CGG 0.657461 tig0020633:-49946 None:intergenic
CATGAAGGAGTATATGACCG+TGG 0.677378 tig0020633:-52835 None:intergenic
CTGGTGAGAAGAGGTTTCCG+CGG 0.690988 tig0020633:+52804 Msa1384000:CDS
AGGAACGTGTGTTATTACCG+TGG 0.703000 tig0020633:+49244 Msa1384000:five_prime_UTR
ACACTGGCAGAATGTGACTG+AGG 0.705590 tig0020633:-49908 None:intergenic
GCTTTCCATGATGAAGAATG+GGG 0.729667 tig0020633:+50968 Msa1384000:CDS
TGACCGTGGGACCCACACCG+CGG 0.744972 tig0020633:-52821 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTTCTAAATTTTTA+TGG + tig0020633:49567-49586 Msa1384000:five_prime_UTR 10.0%
!!! GTTTTTTTCTAAATTTTTAT+GGG + tig0020633:49568-49587 Msa1384000:five_prime_UTR 10.0%
!! TAAATCTTTAGTTATATATT+GGG + tig0020633:51575-51594 Msa1384000:intron 10.0%
!! CTTATTCACATTTATTTATA+TGG - tig0020633:50576-50595 None:intergenic 15.0%
!! TTGAAGAAATAAAAGAAATT+TGG - tig0020633:51216-51235 None:intergenic 15.0%
!!! ATAACTAAAGATTTAGAATA+TGG - tig0020633:51570-51589 None:intergenic 15.0%
!! CTAAATCTTTAGTTATATAT+TGG + tig0020633:51574-51593 Msa1384000:intron 15.0%
!! ATTTAATGATGATTTGATTA+GGG + tig0020633:52333-52352 Msa1384000:intron 15.0%
!! TTTAGATAATAAAGGTAATT+GGG + tig0020633:52359-52378 Msa1384000:intron 15.0%
!!! TTTTATAGGTTTCCAATTTT+GGG + tig0020633:49435-49454 Msa1384000:five_prime_UTR 20.0%
!!! AAAATTCAAGATCTGTTTTT+GGG + tig0020633:49499-49518 Msa1384000:five_prime_UTR 20.0%
!!! TGATAATTAGAGTTTTCAAA+AGG + tig0020633:49601-49620 Msa1384000:five_prime_UTR 20.0%
!!! GATAATTAGAGTTTTCAAAA+GGG + tig0020633:49602-49621 Msa1384000:five_prime_UTR 20.0%
!! GTAAAAAAAGAAGAAGAATT+TGG + tig0020633:49636-49655 Msa1384000:five_prime_UTR 20.0%
!! AACACAAATCTTTCTAATTT+AGG - tig0020633:49698-49717 None:intergenic 20.0%
!!! AAGTAAAATCTCAATTTTCA+AGG - tig0020633:50514-50533 None:intergenic 20.0%
!! TTTAAATTCATAACTCCATT+TGG + tig0020633:50532-50551 Msa1384000:intron 20.0%
!!! TAGTTGTTGTTTTTTATCAT+TGG + tig0020633:50722-50741 Msa1384000:intron 20.0%
!!! TAAAAATAGTCTTGTTATGT+TGG + tig0020633:51028-51047 Msa1384000:intron 20.0%
!! ACTAATATACCTTTGATATT+TGG - tig0020633:51469-51488 None:intergenic 20.0%
!!! TGATTTATTTTTTTTCCGAA+GGG - tig0020633:52053-52072 None:intergenic 20.0%
!!! ATGATTTATTTTTTTTCCGA+AGG - tig0020633:52054-52073 None:intergenic 20.0%
!!! ATATTTCTGTATTGATCTTT+TGG + tig0020633:52078-52097 Msa1384000:intron 20.0%
!! AAGTCGAATAATTTCATAAA+AGG + tig0020633:52122-52141 Msa1384000:intron 20.0%
!! AGTCGAATAATTTCATAAAA+GGG + tig0020633:52123-52142 Msa1384000:intron 20.0%
!!! AAGCCTTTTTTTTCAAAAAA+GGG - tig0020633:52203-52222 None:intergenic 20.0%
!!! TATAATTACCATTGATAATG+AGG + tig0020633:52264-52283 Msa1384000:intron 20.0%
!!! ATAATTACCATTGATAATGA+GGG + tig0020633:52265-52284 Msa1384000:intron 20.0%
!! CATTTAATGATGATTTGATT+AGG + tig0020633:52332-52351 Msa1384000:intron 20.0%
!! GTTTAGATAATAAAGGTAAT+TGG + tig0020633:52358-52377 Msa1384000:intron 20.0%
!! ATTGTGACAAATTAGAATAT+AGG - tig0020633:52465-52484 None:intergenic 20.0%
!! GTTAAAGAATCCAAATAATT+AGG - tig0020633:52497-52516 None:intergenic 20.0%
!! TTCATTTCATTTCATTATAC+AGG + tig0020633:53293-53312 Msa1384000:three_prime_UTR 20.0%
!!! TTCATGAATCTATTTTTTCC+TGG - tig0020633:49215-49234 None:intergenic 25.0%
!!! ACTTTTTGGAAGCAAAATTA+GGG - tig0020633:49381-49400 None:intergenic 25.0%
! CTGATTGGATTTAAGAAAAT+GGG - tig0020633:49407-49426 None:intergenic 25.0%
! CAAAATTGGAAACCTATAAA+AGG - tig0020633:49436-49455 None:intergenic 25.0%
!! CTTTTATAGGTTTCCAATTT+TGG + tig0020633:49434-49453 Msa1384000:five_prime_UTR 25.0%
!!! ATTTCTTTGAAACCCAAAAT+TGG - tig0020633:49450-49469 None:intergenic 25.0%
!!! AATTTTGGGTTTCAAAGAAA+TGG + tig0020633:49449-49468 Msa1384000:five_prime_UTR 25.0%
!!! ATTTTGGGTTTCAAAGAAAT+GGG + tig0020633:49450-49469 Msa1384000:five_prime_UTR 25.0%
!! GAAAATTCAAGATCTGTTTT+TGG + tig0020633:49498-49517 Msa1384000:five_prime_UTR 25.0%
!!! AAATTCAAGATCTGTTTTTG+GGG + tig0020633:49500-49519 Msa1384000:five_prime_UTR 25.0%
! AAAAAGAAGAAGAATTTGGT+CGG + tig0020633:49640-49659 Msa1384000:five_prime_UTR 25.0%
! TTAAGAAATCAAGGAAATTG+GGG - tig0020633:50210-50229 None:intergenic 25.0%
! CTTAAGAAATCAAGGAAATT+GGG - tig0020633:50211-50230 None:intergenic 25.0%
! TCTTAAGAAATCAAGGAAAT+TGG - tig0020633:50212-50231 None:intergenic 25.0%
! AATGTCTTCTTAAGAAATCA+AGG - tig0020633:50219-50238 None:intergenic 25.0%
! TGATTTCTTAAGAAGACATT+TGG + tig0020633:50219-50238 Msa1384000:intron 25.0%
!!! GAGTGATTTTAAAACATCAT+GGG + tig0020633:50241-50260 Msa1384000:intron 25.0%
!!! TTTTTTTTCCTGTATATGTG+TGG + tig0020633:50298-50317 Msa1384000:intron 25.0%
! ATAATATGTTGATGTCCAAA+TGG - tig0020633:50550-50569 None:intergenic 25.0%
! TTTATCATTGGAGAGAAAAT+TGG + tig0020633:50734-50753 Msa1384000:intron 25.0%
! TTATCATTGGAGAGAAAATT+GGG + tig0020633:50735-50754 Msa1384000:intron 25.0%
!!! TATTAAGTTCTGAACTACTT+TGG + tig0020633:50881-50900 Msa1384000:intron 25.0%
!! AAATGTAGCCAATTTTATCA+TGG + tig0020633:51235-51254 Msa1384000:intron 25.0%
! CAAAGTCAAAGAGAAAAAAA+TGG - tig0020633:51283-51302 None:intergenic 25.0%
! CTCAAAATTAAATGAGAAGA+AGG + tig0020633:51370-51389 Msa1384000:CDS 25.0%
! AGTTATATATTGGGTGTATA+TGG + tig0020633:51584-51603 Msa1384000:intron 25.0%
! GTTATATATTGGGTGTATAT+GGG + tig0020633:51585-51604 Msa1384000:intron 25.0%
! AGATATATATTGGGTGTATA+TGG + tig0020633:51664-51683 Msa1384000:intron 25.0%
!! TATGGTTCTTTTGGTATAAT+TGG + tig0020633:51682-51701 Msa1384000:intron 25.0%
! ATGAATAAAGTGTAATTCTG+AGG + tig0020633:51970-51989 Msa1384000:intron 25.0%
! TGAATAAAGTGTAATTCTGA+GGG + tig0020633:51971-51990 Msa1384000:intron 25.0%
!!! CTTCCCTTTTTTGAAAAAAA+AGG + tig0020633:52197-52216 Msa1384000:intron 25.0%
!!! CAAGCCTTTTTTTTCAAAAA+AGG - tig0020633:52204-52223 None:intergenic 25.0%
! TGTACGAAAGATTAATATCA+TGG - tig0020633:52432-52451 None:intergenic 25.0%
! GAATTGTAGTGTTTAATGTT+AGG - tig0020633:52554-52573 None:intergenic 25.0%
!!! AATTCTACACCAATTTGTTA+AGG - tig0020633:53191-53210 None:intergenic 25.0%
! AAATTTTGCGAGAAAATGCT+GGG - tig0020633:49177-49196 None:intergenic 30.0%
AGATTCATGAACTCTTCTTA+AGG + tig0020633:49224-49243 Msa1384000:five_prime_UTR 30.0%
!! GACTTTTTGGAAGCAAAATT+AGG - tig0020633:49382-49401 None:intergenic 30.0%
!!! AAGAAAATGGGTTGACTTTT+TGG - tig0020633:49395-49414 None:intergenic 30.0%
GCTGATTGGATTTAAGAAAA+TGG - tig0020633:49408-49427 None:intergenic 30.0%
TATAAAAGGTTGAAGCTGAT+TGG - tig0020633:49422-49441 None:intergenic 30.0%
! AATCAGCTTCAACCTTTTAT+AGG + tig0020633:49421-49440 Msa1384000:five_prime_UTR 30.0%
!!! TTTTGGGTTTCAAAGAAATG+GGG + tig0020633:49451-49470 Msa1384000:five_prime_UTR 30.0%
!!! GGAGTGATTTTAAAACATCA+TGG + tig0020633:50240-50259 Msa1384000:intron 30.0%
TTAAACACATAATTATGCCC+CGG - tig0020633:50267-50286 None:intergenic 30.0%
CTGAATTGCTTTCACATATA+TGG + tig0020633:50374-50393 Msa1384000:intron 30.0%
AATTGCTTTCACATATATGG+CGG + tig0020633:50377-50396 Msa1384000:intron 30.0%
GTAGTTTAATCTCATTCATC+TGG + tig0020633:50402-50421 Msa1384000:intron 30.0%
TCAAATATTCATTCGTGCAA+TGG + tig0020633:50641-50660 Msa1384000:intron 30.0%
CAAATATTCATTCGTGCAAT+GGG + tig0020633:50642-50661 Msa1384000:intron 30.0%
ATTGATCTATATCCAGTTTG+CGG - tig0020633:50781-50800 None:intergenic 30.0%
! CTAGTTCTCATTCATTCATA+TGG - tig0020633:50816-50835 None:intergenic 30.0%
AGAAATTTCCAGTAAAGGTA+TGG - tig0020633:50839-50858 None:intergenic 30.0%
TGTAGAGAAATTTCCAGTAA+AGG - tig0020633:50844-50863 None:intergenic 30.0%
TCAACAAGTAAACTTAGTCA+GGG - tig0020633:50928-50947 None:intergenic 30.0%
ATCAACAAGTAAACTTAGTC+AGG - tig0020633:50929-50948 None:intergenic 30.0%
!! AATAGTCTTGTTATGTTGGT+TGG + tig0020633:51032-51051 Msa1384000:intron 30.0%
! ATCCTCCATTAAATTTTGCT+TGG + tig0020633:51066-51085 Msa1384000:intron 30.0%
! TAAGCAAGAGACACATTTTT+AGG + tig0020633:51170-51189 Msa1384000:CDS 30.0%
GAAAAAAATGGCTACATATG+AGG - tig0020633:51271-51290 None:intergenic 30.0%
!!! TTTAATTTTGAGACAGCAAC+TGG - tig0020633:51362-51381 None:intergenic 30.0%
ATTGTAGAATATACCCTCTT+GGG + tig0020633:51513-51532 Msa1384000:intron 30.0%
AATTATGATCTAACCCAAGA+GGG - tig0020633:51529-51548 None:intergenic 30.0%
TAATTATGATCTAACCCAAG+AGG - tig0020633:51530-51549 None:intergenic 30.0%
GGTTAGATCATAATTACTTG+TGG + tig0020633:51534-51553 Msa1384000:intron 30.0%
! ATGGGTTCTTTTGGTATAAT+TGG + tig0020633:51603-51622 Msa1384000:intron 30.0%
! TGGGTTCTTTTGGTATAATT+GGG + tig0020633:51604-51623 Msa1384000:intron 30.0%
TCCCTTGAGTAGATATATAT+TGG + tig0020633:51654-51673 Msa1384000:intron 30.0%
CCCAATATATATCTACTCAA+GGG - tig0020633:51658-51677 None:intergenic 30.0%
CCCTTGAGTAGATATATATT+GGG + tig0020633:51655-51674 Msa1384000:intron 30.0%
ACCCAATATATATCTACTCA+AGG - tig0020633:51659-51678 None:intergenic 30.0%
! AGCTCTCTCAAGATTTTTAA+CGG + tig0020633:51769-51788 Msa1384000:intron 30.0%
GAGTACTATAACAAAGATCT+CGG - tig0020633:52237-52256 None:intergenic 30.0%
!! ATTGATAATGAGGGACTAAT+GGG + tig0020633:52274-52293 Msa1384000:intron 30.0%
TAATGATGATTTGATTAGGG+AGG + tig0020633:52336-52355 Msa1384000:intron 30.0%
TAGGGAGGTTTAGATAATAA+AGG + tig0020633:52351-52370 Msa1384000:intron 30.0%
! TAATAAAGGTAATTGGGTTG+TGG + tig0020633:52365-52384 Msa1384000:intron 30.0%
!! TTTAATTTGCATGACCCATA+TGG + tig0020633:52400-52419 Msa1384000:intron 30.0%
!! TTAATTTGCATGACCCATAT+GGG + tig0020633:52401-52420 Msa1384000:intron 30.0%
TGATGTGAGACCTAATTATT+TGG + tig0020633:52484-52503 Msa1384000:intron 30.0%
!! TATCGGAATTTGCTAAGTAT+AGG - tig0020633:52732-52751 None:intergenic 30.0%
!!! TTCAGCTTTTGGTGTTTTAA+CGG - tig0020633:52769-52788 None:intergenic 30.0%
! TTGCTAATAACTTCAGCTTT+TGG - tig0020633:52780-52799 None:intergenic 30.0%
ACTCAAATTATCAATGGCAA+TGG - tig0020633:53009-53028 None:intergenic 30.0%
GGACAAACTCAAATTATCAA+TGG - tig0020633:53015-53034 None:intergenic 30.0%
ATTTACTGTGATTCATTCTG+AGG - tig0020633:53036-53055 None:intergenic 30.0%
AGAATGAATCACAGTAAATC+TGG + tig0020633:53037-53056 Msa1384000:exon 30.0%
GTAAATCTGGTAGATCAAAT+AGG + tig0020633:53050-53069 Msa1384000:three_prime_UTR 30.0%
CTCAAATATAACTCAATCTC+AGG - tig0020633:53092-53111 None:intergenic 30.0%
CTGAGATTGAGTTATATTTG+AGG + tig0020633:53090-53109 Msa1384000:three_prime_UTR 30.0%
TTGTGTATCAATCTCAAAGA+AGG + tig0020633:53118-53137 Msa1384000:three_prime_UTR 30.0%
TGTGTATCAATCTCAAAGAA+GGG + tig0020633:53119-53138 Msa1384000:three_prime_UTR 30.0%
GATGAAAATGAAGAGAGAGA+AGG - tig0020633:49147-49166 None:intergenic 35.0%
! AATTTTGCGAGAAAATGCTG+GGG - tig0020633:49176-49195 None:intergenic 35.0%
! GAAATTTTGCGAGAAAATGC+TGG - tig0020633:49178-49197 None:intergenic 35.0%
! TTTCTCTGCTACTATTTTCC+AGG + tig0020633:49194-49213 Msa1384000:five_prime_UTR 35.0%
AACTTCAATGCTACCTCAAA+AGG - tig0020633:49276-49295 None:intergenic 35.0%
TTCCTTTCAACAATGCAGAA+CGG + tig0020633:49294-49313 Msa1384000:five_prime_UTR 35.0%
TGGAAGCAAAATTAGGGTTT+AGG - tig0020633:49375-49394 None:intergenic 35.0%
! GTTTTCGTAGTTCACTTTGA+AGG + tig0020633:49473-49492 Msa1384000:five_prime_UTR 35.0%
! TCGAACTTTTAACAAACACC+TGG - tig0020633:49541-49560 None:intergenic 35.0%
TGATTGATTGTGTGTATTGG+TGG + tig0020633:49663-49682 Msa1384000:five_prime_UTR 35.0%
! GATTGATTGTGTGTATTGGT+GGG + tig0020633:49664-49683 Msa1384000:five_prime_UTR 35.0%
TTTGTGTTAATGTCAGCTTC+AGG + tig0020633:49710-49729 Msa1384000:exon 35.0%
ACATTCATAGACCTCAATCT+AGG - tig0020633:49740-49759 None:intergenic 35.0%
!! AGAAGCATCTTTCTTCTCTT+TGG - tig0020633:49888-49907 None:intergenic 35.0%
CTAATAGCTATGGTTTGACA+AGG + tig0020633:50056-50075 Msa1384000:CDS 35.0%
!!! GATTTTAAAACATCATGGGC+CGG + tig0020633:50245-50264 Msa1384000:intron 35.0%
!!! ATTTTAAAACATCATGGGCC+GGG + tig0020633:50246-50265 Msa1384000:intron 35.0%
ACTATGAACTATCCTACCAA+AGG - tig0020633:50331-50350 None:intergenic 35.0%
TGGTAGGATAGTTCATAGTT+CGG + tig0020633:50332-50351 Msa1384000:intron 35.0%
! AGTTCGGTTCATGATACTTT+TGG + tig0020633:50348-50367 Msa1384000:intron 35.0%
! TCTCATTCATCTGGTTTCAT+TGG + tig0020633:50411-50430 Msa1384000:intron 35.0%
! AATGGGTTTGTAGCCAAAAT+GGG + tig0020633:50659-50678 Msa1384000:intron 35.0%
! TTGCATGTTTTACCCCATTT+TGG - tig0020633:50675-50694 None:intergenic 35.0%
AAATGGGGTAAAACATGCAA+TGG + tig0020633:50675-50694 Msa1384000:intron 35.0%
TGGACATGTACCTCTTATTA+TGG + tig0020633:50695-50714 Msa1384000:intron 35.0%
GGACATGTACCTCTTATTAT+GGG + tig0020633:50696-50715 Msa1384000:intron 35.0%
CAACTATAGCCCATAATAAG+AGG - tig0020633:50708-50727 None:intergenic 35.0%
TCTCATTCATTCATATGGAG+TGG - tig0020633:50811-50830 None:intergenic 35.0%
TCATGGAAAGCAGCATAATA+TGG - tig0020633:50959-50978 None:intergenic 35.0%
TGCTTTCCATGATGAAGAAT+GGG + tig0020633:50967-50986 Msa1384000:CDS 35.0%
! CTTGTTATGTTGGTTGGAAA+AGG + tig0020633:51038-51057 Msa1384000:intron 35.0%
TGCCAAGCAAAATTTAATGG+AGG - tig0020633:51071-51090 None:intergenic 35.0%
GAGTGCCAAGCAAAATTTAA+TGG - tig0020633:51074-51093 None:intergenic 35.0%
AATGTGTCTCTTGCTTAGAA+TGG - tig0020633:51167-51186 None:intergenic 35.0%
TTGTTAACAAAGTCCTTTGC+AGG + tig0020633:51315-51334 Msa1384000:intron 35.0%
TGTTAACAAAGTCCTTTGCA+GGG + tig0020633:51316-51335 Msa1384000:intron 35.0%
CAATTTCTGATCAGAGAGTA+AGG - tig0020633:51423-51442 None:intergenic 35.0%
! GAGGGTATATTCTACAATGA+AGG - tig0020633:51511-51530 None:intergenic 35.0%
CATTGTAGAATATACCCTCT+TGG + tig0020633:51512-51531 Msa1384000:intron 35.0%
! TTGGGTGTATATGGTTCTTT+TGG + tig0020633:51673-51692 Msa1384000:intron 35.0%
TTGTGTCATACTCTACTCAA+GGG - tig0020633:51739-51758 None:intergenic 35.0%
ATTGTGTCATACTCTACTCA+AGG - tig0020633:51740-51759 None:intergenic 35.0%
TTGAGTAGAGTATGACACAA+TGG + tig0020633:51739-51758 Msa1384000:intron 35.0%
TGAGTAGAGTATGACACAAT+GGG + tig0020633:51740-51759 Msa1384000:intron 35.0%
! TTTAACGGTGCTTCATTTTC+AGG + tig0020633:51784-51803 Msa1384000:intron 35.0%
! TTAACGGTGCTTCATTTTCA+GGG + tig0020633:51785-51804 Msa1384000:intron 35.0%
ATGGGCTTAATAACATGTCT+AGG + tig0020633:51887-51906 Msa1384000:intron 35.0%
GTATATAGTACCACCTAGAA+CGG - tig0020633:51932-51951 None:intergenic 35.0%
! AAAGTGTAATTCTGAGGGTT+TGG + tig0020633:51976-51995 Msa1384000:intron 35.0%
! AAGTGTAATTCTGAGGGTTT+GGG + tig0020633:51977-51996 Msa1384000:intron 35.0%
TTCGACTTACTTTCCTAGTT+AGG - tig0020633:52110-52129 None:intergenic 35.0%
CATTAGTCCCTCATTATCAA+TGG - tig0020633:52275-52294 None:intergenic 35.0%
!! CATTGATAATGAGGGACTAA+TGG + tig0020633:52273-52292 Msa1384000:intron 35.0%
ATGCAAATTAAATGAGGACC+AGG - tig0020633:52392-52411 None:intergenic 35.0%
TGGGTCATGCAAATTAAATG+AGG - tig0020633:52398-52417 None:intergenic 35.0%
! TATCATGGTTTGTCCCATAT+GGG - tig0020633:52417-52436 None:intergenic 35.0%
! ATATCATGGTTTGTCCCATA+TGG - tig0020633:52418-52437 None:intergenic 35.0%
AATTGTGCAGAGTGCAATTA+TGG - tig0020633:52594-52613 None:intergenic 35.0%
GGTCATTCGACAATTACATT+TGG + tig0020633:52688-52707 Msa1384000:CDS 35.0%
! ATTTGCTAAGTATAGGCTTG+TGG - tig0020633:52725-52744 None:intergenic 35.0%
!!! TCAGCTTTTGGTGTTTTAAC+GGG - tig0020633:52768-52787 None:intergenic 35.0%
TGAAGTTATTAGCAAAGACC+TGG + tig0020633:52785-52804 Msa1384000:CDS 35.0%
! GAAATCTGAAGCAACTAATG+AGG - tig0020633:52887-52906 None:intergenic 35.0%
CATTAGTTGCTTCAGATTTC+AGG + tig0020633:52887-52906 Msa1384000:CDS 35.0%
ATCACACTATCACATGCATT+TGG - tig0020633:52972-52991 None:intergenic 35.0%
! AAATGCATGTGATAGTGTGA+TGG + tig0020633:52971-52990 Msa1384000:CDS 35.0%
!! AATTTGTTAAGGCTTCCATC+CGG - tig0020633:53180-53199 None:intergenic 35.0%
TATCTATTACCTGCTAACAC+TGG - tig0020633:53261-53280 None:intergenic 35.0%
TGAAGAGAGAGAAGGAAGTA+GGG - tig0020633:49139-49158 None:intergenic 40.0%
ATGAAGAGAGAGAAGGAAGT+AGG - tig0020633:49140-49159 None:intergenic 40.0%
TCAATGCTACCTCAAAAGGT+TGG - tig0020633:49272-49291 None:intergenic 40.0%
TTCCGTTCTGCATTGTTGAA+AGG - tig0020633:49299-49318 None:intergenic 40.0%
AACAATGCAGAACGGAATCT+TGG + tig0020633:49302-49321 Msa1384000:five_prime_UTR 40.0%
! TTTCAAAAGGGTGTGTAGTG+AGG + tig0020633:49614-49633 Msa1384000:five_prime_UTR 40.0%
CGGTGATTGATTGTGTGTAT+TGG + tig0020633:49660-49679 Msa1384000:five_prime_UTR 40.0%
AATTTCTCAGCCTTTCTCAG+TGG - tig0020633:49845-49864 None:intergenic 40.0%
ACTGAGAAAGGCTGAGAAAT+TGG + tig0020633:49844-49863 Msa1384000:CDS 40.0%
CTGAGAAAGGCTGAGAAATT+GGG + tig0020633:49845-49864 Msa1384000:CDS 40.0%
AATGCAACAACTGCTCATGT+CGG - tig0020633:49949-49968 None:intergenic 40.0%
GATGAATGCTTCGTGTTCTT+CGG + tig0020633:49979-49998 Msa1384000:CDS 40.0%
TCAATCTTCCAGTAGAAGCT+CGG - tig0020633:50030-50049 None:intergenic 40.0%
CTTCTACTGGAAGATTGACT+CGG + tig0020633:50032-50051 Msa1384000:CDS 40.0%
!! TTGACTCGGTCTAATAGCTA+TGG + tig0020633:50046-50065 Msa1384000:CDS 40.0%
!! CCAAGAAGTGTTGTTTCTGA+CGG + tig0020633:50097-50116 Msa1384000:CDS 40.0%
GAGTGGAACAAACCAGTATT+GGG - tig0020633:50184-50203 None:intergenic 40.0%
GAAATCAAGGAAATTGGGGA+AGG - tig0020633:50206-50225 None:intergenic 40.0%
!!! TTTTAAAACATCATGGGCCG+GGG + tig0020633:50247-50266 Msa1384000:intron 40.0%
! CAATGGGTTTGTAGCCAAAA+TGG + tig0020633:50658-50677 Msa1384000:intron 40.0%
ATGGGTTTGTAGCCAAAATG+GGG + tig0020633:50660-50679 Msa1384000:intron 40.0%
AGAACTAGCCATACCTTTAC+TGG + tig0020633:50828-50847 Msa1384000:intron 40.0%
CTGCTTTCCATGATGAAGAA+TGG + tig0020633:50966-50985 Msa1384000:CDS 40.0%
GCTTTCCATGATGAAGAATG+GGG + tig0020633:50968-50987 Msa1384000:CDS 40.0%
ACATACTTGTCGTCATGTAC+TGG - tig0020633:50998-51017 None:intergenic 40.0%
TGGCACTCTTTATCACATGT+AGG + tig0020633:51086-51105 Msa1384000:intron 40.0%
CACATGTAGGAAACTGTTTG+AGG + tig0020633:51099-51118 Msa1384000:intron 40.0%
! GTAGCCAATTTTATCATGGC+TGG + tig0020633:51239-51258 Msa1384000:intron 40.0%
AGAGAGTAAGGAACTTGTAG+TGG - tig0020633:51411-51430 None:intergenic 40.0%
GAATGCACGCCAAATATCAA+AGG + tig0020633:51457-51476 Msa1384000:CDS 40.0%
! TGGGTGTATATGGGTTCTTT+TGG + tig0020633:51594-51613 Msa1384000:intron 40.0%
ATAATTGGGTATCCTTCACC+CGG + tig0020633:51618-51637 Msa1384000:intron 40.0%
GTCTCTTCCAAATTAACCAG+AGG - tig0020633:51829-51848 None:intergenic 40.0%
! CTGGTTAATTTGGAAGAGAC+CGG + tig0020633:51829-51848 Msa1384000:intron 40.0%
! AGTGTAATTCTGAGGGTTTG+GGG + tig0020633:51978-51997 Msa1384000:intron 40.0%
!! CTTTTGGAGAACACCTAACT+AGG + tig0020633:52094-52113 Msa1384000:intron 40.0%
ACTCTGCACAATTTGCATCA+CGG + tig0020633:52601-52620 Msa1384000:intron 40.0%
! CGTTGCAACTAACTTTTTGC+AGG + tig0020633:52634-52653 Msa1384000:intron 40.0%
! ATGAAGGAGTATATGACCGT+GGG - tig0020633:52837-52856 None:intergenic 40.0%
! ATCTGAAGCAACTAATGAGG+TGG - tig0020633:52884-52903 None:intergenic 40.0%
CTTCAGATTTCAGGAATGTG+TGG + tig0020633:52896-52915 Msa1384000:CDS 40.0%
GGAGAATTCCATCAAGAATG+AGG + tig0020633:52938-52957 Msa1384000:CDS 40.0%
TTGAGCATCCTCATTCTTGA+TGG - tig0020633:52949-52968 None:intergenic 40.0%
TGCTGTTGTATGAAGCTTTC+CGG + tig0020633:53158-53177 Msa1384000:three_prime_UTR 40.0%
GGATGGAAGCCTTAACAAAT+TGG + tig0020633:53179-53198 Msa1384000:three_prime_UTR 40.0%
TTTACTGATCCAGTGTTAGC+AGG + tig0020633:53249-53268 Msa1384000:three_prime_UTR 40.0%
! GTAGGGGTGTGCAAAAAATG+TGG - tig0020633:49122-49141 None:intergenic 45.0%
GAAGAGAGAGAAGGAAGTAG+GGG - tig0020633:49138-49157 None:intergenic 45.0%
CGAGAAAATGCTGGGGAAAA+AGG - tig0020633:49169-49188 None:intergenic 45.0%
! AGGAACGTGTGTTATTACCG+TGG + tig0020633:49244-49263 Msa1384000:five_prime_UTR 45.0%
TAGCTGAAGAGAACCTCGAA+AGG - tig0020633:49328-49347 None:intergenic 45.0%
GTGTTAATGTCAGCTTCAGG+AGG + tig0020633:49713-49732 Msa1384000:exon 45.0%
!! ATGTTGCTGACTCAGAAGCA+AGG + tig0020633:49756-49775 Msa1384000:CDS 45.0%
!! GAACCTGTCTTATTTCCAGC+AGG - tig0020633:49794-49813 None:intergenic 45.0%
TGCTTCAAAGCCACTGAGAA+AGG + tig0020633:49832-49851 Msa1384000:CDS 45.0%
AAAGGCTGAGAAATTGGGCA+AGG + tig0020633:49850-49869 Msa1384000:CDS 45.0%
! ATTGGGCAAGGAGGTTGATT+TGG + tig0020633:49862-49881 Msa1384000:CDS 45.0%
TTTCATAGCCGAGCTTCTAC+TGG + tig0020633:50019-50038 Msa1384000:CDS 45.0%
GCTATGGTTTGACAAGGAAG+CGG + tig0020633:50062-50081 Msa1384000:CDS 45.0%
CCGTCAGAAACAACACTTCT+TGG - tig0020633:50100-50119 None:intergenic 45.0%
!! TGTTGTTTCTGACGGTGTGT+TGG + tig0020633:50105-50124 Msa1384000:CDS 45.0%
TTCTTGGATTGTGCACCATC+AGG - tig0020633:50142-50161 None:intergenic 45.0%
ATGGTGCACAATCCAAGAAG+AGG + tig0020633:50143-50162 Msa1384000:CDS 45.0%
! AATCCAAGAAGAGGTGTGCT+TGG + tig0020633:50152-50171 Msa1384000:CDS 45.0%
GGAGTGGAACAAACCAGTAT+TGG - tig0020633:50185-50204 None:intergenic 45.0%
! AAGAAGTACATGCCGCAAAC+TGG + tig0020633:50766-50785 Msa1384000:intron 45.0%
GAACTCCCCATTCTTCATCA+TGG - tig0020633:50976-50995 None:intergenic 45.0%
GTGCTCTATCTGAACTCACT+TGG + tig0020633:51137-51156 Msa1384000:CDS 45.0%
TGTCTCTTGCTTAGAATGGC+TGG - tig0020633:51163-51182 None:intergenic 45.0%
GCAGCCAGCCATGATAAAAT+TGG - tig0020633:51246-51265 None:intergenic 45.0%
CAGCAAAAACTTCCCTGCAA+AGG - tig0020633:51331-51350 None:intergenic 45.0%
GAGAAGAAGGTGATAACACC+AGG + tig0020633:51383-51402 Msa1384000:CDS 45.0%
AAGGAACTTGTAGTGGTTCC+TGG - tig0020633:51404-51423 None:intergenic 45.0%
CTCTCTGATCAGAAATTGCG+TGG + tig0020633:51425-51444 Msa1384000:CDS 45.0%
AAGGGATTTCTCTGCAGTTC+CGG - tig0020633:51640-51659 None:intergenic 45.0%
GGATTACTCTCTGCAGTTGT+GGG - tig0020633:51718-51737 None:intergenic 45.0%
CCAAATTAACCAGAGGCCAT+GGG - tig0020633:51822-51841 None:intergenic 45.0%
TCCAAATTAACCAGAGGCCA+TGG - tig0020633:51823-51842 None:intergenic 45.0%
GCGTTTGGATGAGATGATTC+CGG - tig0020633:51851-51870 None:intergenic 45.0%
TCATCTCATCCAAACGCTCT+TGG + tig0020633:51854-51873 Msa1384000:intron 45.0%
CATCTCATCCAAACGCTCTT+GGG + tig0020633:51855-51874 Msa1384000:intron 45.0%
!! GCTCTTGGGTTGGTGTATAT+GGG + tig0020633:51869-51888 Msa1384000:intron 45.0%
GTGATGTTACTAGCCGTTCT+AGG + tig0020633:51916-51935 Msa1384000:intron 45.0%
! ATGTTACTAGCCGTTCTAGG+TGG + tig0020633:51919-51938 Msa1384000:intron 45.0%
CAAACTGGCAACACATCAAG+CGG - tig0020633:52022-52041 None:intergenic 45.0%
GCTTGATGTGTTGCCAGTTT+GGG + tig0020633:52021-52040 Msa1384000:intron 45.0%
CTTGATGTGTTGCCAGTTTG+GGG + tig0020633:52022-52041 Msa1384000:intron 45.0%
TTGATGTGTTGCCAGTTTGG+GGG + tig0020633:52023-52042 Msa1384000:intron 45.0%
CACATACCAGCTAAGCATGT+TGG - tig0020633:52523-52542 None:intergenic 45.0%
! TTGCAGGTTTTACTGATGCC+AGG + tig0020633:52650-52669 Msa1384000:intron 45.0%
TGCCAGGTCATAGTAGAGTT+TGG + tig0020633:52666-52685 Msa1384000:intron 45.0%
GCCAGGTCATAGTAGAGTTT+GGG + tig0020633:52667-52686 Msa1384000:intron 45.0%
ACCCAAACTCTACTATGACC+TGG - tig0020633:52671-52690 None:intergenic 45.0%
!!! TGTTTTAACGGGAACCTGTC+GGG - tig0020633:52757-52776 None:intergenic 45.0%
!!! GTGTTTTAACGGGAACCTGT+CGG - tig0020633:52758-52777 None:intergenic 45.0%
! CATGAAGGAGTATATGACCG+TGG - tig0020633:52838-52857 None:intergenic 45.0%
GGTCATATACTCCTTCATGC+AGG + tig0020633:52839-52858 Msa1384000:CDS 45.0%
CATATACTCCTTCATGCAGG+TGG + tig0020633:52842-52861 Msa1384000:CDS 45.0%
GTTGTATGAAGCTTTCCGGA+TGG + tig0020633:53162-53181 Msa1384000:three_prime_UTR 45.0%
! AACGGAATCTTGGCCTTTCG+AGG + tig0020633:49312-49331 Msa1384000:five_prime_UTR 50.0%
CTTCAGGAGGTCCTAGATTG+AGG + tig0020633:49726-49745 Msa1384000:CDS 50.0%
TCAGAAGCAAGGCCTGTGTT+TGG + tig0020633:49767-49786 Msa1384000:CDS 50.0%
TTTCCAGCAGGACCAAACAC+AGG - tig0020633:49782-49801 None:intergenic 50.0%
GGTCCTGCTGGAAATAAGAC+AGG + tig0020633:49788-49807 Msa1384000:CDS 50.0%
ACACTGGCAGAATGTGACTG+AGG - tig0020633:49911-49930 None:intergenic 50.0%
GCGCAACACTGAAGAAACAC+TGG - tig0020633:49927-49946 None:intergenic 50.0%
TCGGCTATGAAACGAGTCTG+TGG - tig0020633:50011-50030 None:intergenic 50.0%
TTGGAATCTCCTCCTCCTGA+TGG + tig0020633:50124-50143 Msa1384000:CDS 50.0%
TTGGATTGTGCACCATCAGG+AGG - tig0020633:50139-50158 None:intergenic 50.0%
GATCCAAGCACACCTCTTCT+TGG - tig0020633:50158-50177 None:intergenic 50.0%
GCTTGGATCACTCCCAATAC+TGG + tig0020633:50169-50188 Msa1384000:CDS 50.0%
CAAGGAAATTGGGGAAGGAG+TGG - tig0020633:50201-50220 None:intergenic 50.0%
GCACACAGCCACACATATAC+AGG - tig0020633:50309-50328 None:intergenic 50.0%
TATGTGTGGCTGTGTGCCTT+TGG + tig0020633:50312-50331 Msa1384000:intron 50.0%
AGGGATTTCTCTGCAGTTCC+GGG - tig0020633:51639-51658 None:intergenic 50.0%
GGGATTACTCTCTGCAGTTG+TGG - tig0020633:51719-51738 None:intergenic 50.0%
!! CGGTGCTTCATTTTCAGGGT+TGG + tig0020633:51789-51808 Msa1384000:intron 50.0%
CAGGGTTGGATTTGAACCCA+TGG + tig0020633:51803-51822 Msa1384000:intron 50.0%
CCCATGGCCTCTGGTTAATT+TGG + tig0020633:51819-51838 Msa1384000:intron 50.0%
TCATCCAAACGCTCTTGGGT+TGG + tig0020633:51859-51878 Msa1384000:intron 50.0%
!! TACACCAACCCAAGAGCGTT+TGG - tig0020633:51866-51885 None:intergenic 50.0%
!! CGCTCTTGGGTTGGTGTATA+TGG + tig0020633:51868-51887 Msa1384000:intron 50.0%
CGCTTGATGTGTTGCCAGTT+TGG + tig0020633:52020-52039 Msa1384000:intron 50.0%
! CAGTTTGGGGGTTTTCCCTT+CGG + tig0020633:52035-52054 Msa1384000:intron 50.0%
! AGGTAATTGGGTTGTGGTCC+TGG + tig0020633:52371-52390 Msa1384000:intron 50.0%
AACCAGCCAACATGCTTAGC+TGG + tig0020633:52514-52533 Msa1384000:intron 50.0%
TACCAGCTAAGCATGTTGGC+TGG - tig0020633:52519-52538 None:intergenic 50.0%
CAAATTCCGATATCCCCGAC+AGG + tig0020633:52740-52759 Msa1384000:CDS 50.0%
!! GTTTTAACGGGAACCTGTCG+GGG - tig0020633:52756-52775 None:intergenic 50.0%
AGCAAAGACCTGGTGAGAAG+AGG + tig0020633:52795-52814 Msa1384000:CDS 50.0%
ATACTCCTTCATGCAGGTGG+TGG + tig0020633:52845-52864 Msa1384000:CDS 50.0%
TACTCCTTCATGCAGGTGGT+GGG + tig0020633:52846-52865 Msa1384000:CDS 50.0%
AATGTGTGGCTGCAGCAGAA+GGG + tig0020633:52910-52929 Msa1384000:CDS 50.0%
ACCTCAAAAGGTTGGCGCCA+CGG - tig0020633:49264-49283 None:intergenic 55.0%
GGGTCACTTCATTGTGCACC+AGG + tig0020633:49520-49539 Msa1384000:five_prime_UTR 55.0%
GGCTGAGAAATTGGGCAAGG+AGG + tig0020633:49853-49872 Msa1384000:CDS 55.0%
GATTGTGCACCATCAGGAGG+AGG - tig0020633:50136-50155 None:intergenic 55.0%
TGTGGCTGTGTGCCTTTGGT+AGG + tig0020633:50316-50335 Msa1384000:intron 55.0%
TTCTCTGCAGTTCCGGGTGA+AGG - tig0020633:51633-51652 None:intergenic 55.0%
TCTCTGCAGTTGTGGGCGAA+GGG - tig0020633:51711-51730 None:intergenic 55.0%
GGATTTGAACCCATGGCCTC+TGG + tig0020633:51810-51829 Msa1384000:intron 55.0%
CGAAGGGAAAACCCCCAAAC+TGG - tig0020633:52037-52056 None:intergenic 55.0%
CTGGTGAGAAGAGGTTTCCG+CGG + tig0020633:52804-52823 Msa1384000:CDS 55.0%
AGAAGAGGTTTCCGCGGTGT+GGG + tig0020633:52810-52829 Msa1384000:CDS 55.0%
ACTCCTTCATGCAGGTGGTG+GGG + tig0020633:52847-52866 Msa1384000:CDS 55.0%
TAACCCCACCACCTGCATGA+AGG - tig0020633:52853-52872 None:intergenic 55.0%
GAATGTGTGGCTGCAGCAGA+AGG + tig0020633:52909-52928 Msa1384000:CDS 55.0%
! ACCGTGGCGCCAACCTTTTG+AGG + tig0020633:49260-49279 Msa1384000:five_prime_UTR 60.0%
AGGCCTGTGTTTGGTCCTGC+TGG + tig0020633:49776-49795 Msa1384000:CDS 60.0%
CTCTCTGCAGTTGTGGGCGA+AGG - tig0020633:51712-51731 None:intergenic 60.0%
CGGGAACCTGTCGGGGATAT+CGG - tig0020633:52749-52768 None:intergenic 60.0%
CGCGGAAACCTCTTCTCACC+AGG - tig0020633:52806-52825 None:intergenic 60.0%
GAGAAGAGGTTTCCGCGGTG+TGG + tig0020633:52809-52828 Msa1384000:CDS 60.0%
TGTGGCTGCAGCAGAAGGGA+AGG + tig0020633:52914-52933 Msa1384000:CDS 60.0%
TTTCCGCGGTGTGGGTCCCA+CGG + tig0020633:52818-52837 Msa1384000:CDS 65.0%
GGCTGCAGCAGAAGGGAAGG+TGG + tig0020633:52917-52936 Msa1384000:CDS 65.0%
TGACCGTGGGACCCACACCG+CGG - tig0020633:52824-52843 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020633 gene 49087 53372 49087 ID=Msa1384000;Name=Msa1384000
tig0020633 mRNA 49087 53372 49087 ID=Msa1384000-mRNA-1;Parent=Msa1384000;Name=Msa1384000-mRNA-1;_AED=0.08;_eAED=0.08;_QI=632|1|1|1|1|1|5|329|375
tig0020633 exon 49087 50190 49087 ID=Msa1384000-mRNA-1:exon:8882;Parent=Msa1384000-mRNA-1
tig0020633 exon 50954 51011 50954 ID=Msa1384000-mRNA-1:exon:8883;Parent=Msa1384000-mRNA-1
tig0020633 exon 51108 51191 51108 ID=Msa1384000-mRNA-1:exon:8884;Parent=Msa1384000-mRNA-1
tig0020633 exon 51337 51478 51337 ID=Msa1384000-mRNA-1:exon:8885;Parent=Msa1384000-mRNA-1
tig0020633 exon 52672 53372 52672 ID=Msa1384000-mRNA-1:exon:8886;Parent=Msa1384000-mRNA-1
tig0020633 five_prime_UTR 49087 49718 49087 ID=Msa1384000-mRNA-1:five_prime_utr;Parent=Msa1384000-mRNA-1
tig0020633 CDS 49719 50190 49719 ID=Msa1384000-mRNA-1:cds;Parent=Msa1384000-mRNA-1
tig0020633 CDS 50954 51011 50954 ID=Msa1384000-mRNA-1:cds;Parent=Msa1384000-mRNA-1
tig0020633 CDS 51108 51191 51108 ID=Msa1384000-mRNA-1:cds;Parent=Msa1384000-mRNA-1
tig0020633 CDS 51337 51478 51337 ID=Msa1384000-mRNA-1:cds;Parent=Msa1384000-mRNA-1
tig0020633 CDS 52672 53043 52672 ID=Msa1384000-mRNA-1:cds;Parent=Msa1384000-mRNA-1
tig0020633 three_prime_UTR 53044 53372 53044 ID=Msa1384000-mRNA-1:three_prime_utr;Parent=Msa1384000-mRNA-1
Gene Sequence

>Msa1384000

ATGTCAGCTTCAGGAGGTCCTAGATTGAGGTCTATGAATGTTGCTGACTCAGAAGCAAGGCCTGTGTTTGGTCCTGCTGGAAATAAGACAGGTTCTTATAGTTCTAGAAAAGATGCTTCAAAGCCACTGAGAAAGGCTGAGAAATTGGGCAAGGAGGTTGATTTGGCCAAAGAGAAGAAAGATGCTTCTCCTCAGTCACATTCTGCCAGTGTTTCTTCAGTGTTGCGCCGACATGAGCAGTTGTTGCATTCTAATTTGTCGATGAATGCTTCGTGTTCTTCGGATGCATCCACAGACTCGTTTCATAGCCGAGCTTCTACTGGAAGATTGACTCGGTCTAATAGCTATGGTTTGACAAGGAAGCGGTCAGTGTCGAAGCCAAGAAGTGTTGTTTCTGACGGTGTGTTGGAATCTCCTCCTCCTGATGGTGCACAATCCAAGAAGAGGTGTGCTTGGATCACTCCCAATACTGAGCCATATTATGCTGCTTTCCATGATGAAGAATGGGGAGTTCCAGTACATGACGACAAGAAACTGTTTGAGGTTCTTGTTCTTTCGAGTGCTCTATCTGAACTCACTTGGCCAGCCATTCTAAGCAAGAGACACATTTTTAGGGAAGTTTTTGCTGACTTTGATCCAGTTGCTGTCTCAAAATTAAATGAGAAGAAGGTGATAACACCAGGAACCACTACAAGTTCCTTACTCTCTGATCAGAAATTGCGTGGAATAATTGAGAATGCACGCCAAATATCAAAGGTCATAGTAGAGTTTGGGTCATTCGACAATTACATTTGGAGTTTTGTGAACCACAAGCCTATACTTAGCAAATTCCGATATCCCCGACAGGTTCCCGTTAAAACACCAAAAGCTGAAGTTATTAGCAAAGACCTGGTGAGAAGAGGTTTCCGCGGTGTGGGTCCCACGGTCATATACTCCTTCATGCAGGTGGTGGGGTTAACTAATGACCACCTCATTAGTTGCTTCAGATTTCAGGAATGTGTGGCTGCAGCAGAAGGGAAGGTGGAGAATTCCATCAAGAATGAGGATGCTCAACCAAATGCATGTGATAGTGTGATGGAATCTGATCTTTCCATTGCCATTGATAATTTGAGTTTGTCCTCAGAATGA
Protein sequence

>Msa1384000

MSASGGPRLRSMNVADSEARPVFGPAGNKTGSYSSRKDASKPLRKAEKLGKEVDLAKEKKDASPQSHSASVSSVLRRHEQLLHSNLSMNASCSSDASTDSFHSRASTGRLTRSNSYGLTRKRSVSKPRSVVSDGVLESPPPDGAQSKKRCAWITPNTEPYYAAFHDEEWGVPVHDDKKLFEVLVLSSALSELTWPAILSKRHIFREVFADFDPVAVSKLNEKKVITPGTTTSSLLSDQKLRGIIENARQISKVIVEFGSFDNYIWSFVNHKPILSKFRYPRQVPVKTPKAEVISKDLVRRGFRGVGPTVIYSFMQVVGLTNDHLISCFRFQECVAAAEGKVENSIKNEDAQPNACDSVMESDLSIAIDNLSLSSE*