AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1337880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337880 MtrunA17_Chr4g0073991 98.933 375 4 0 1 375 1 375 0.0 763
Msa1337880 MtrunA17_Chr4g0001371 52.699 389 141 9 4 374 2 365 3.58e-119 349
Msa1337880 MtrunA17_Chr3g0141411 53.942 241 101 2 107 346 96 327 1.20e-94 286
Msa1337880 MtrunA17_Chr5g0420791 54.450 191 87 0 148 338 112 302 6.54e-79 244
Msa1337880 MtrunA17_Chr8g0366071 51.546 194 91 1 148 338 116 309 4.71e-74 232
Msa1337880 MtrunA17_Chr2g0309681 52.332 193 90 1 145 337 198 388 4.14e-70 224
Msa1337880 MtrunA17_Chr8g0356301 51.579 190 90 1 145 334 192 379 1.06e-69 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337880 AT5G57970.1 63.372 344 116 2 4 338 2 344 2.95e-156 443
Msa1337880 AT5G57970.2 63.372 344 116 2 4 338 2 344 2.95e-156 443
Msa1337880 AT1G15970.1 52.367 338 148 4 7 338 5 335 6.13e-108 321
Msa1337880 AT1G15970.2 52.367 338 148 4 7 338 5 335 6.13e-108 321
Msa1337880 AT1G80850.1 50.867 346 136 7 4 338 2 324 2.67e-104 310
Msa1337880 AT1G75090.1 59.686 191 77 0 148 338 119 309 9.63e-87 266
Msa1337880 AT1G13635.2 48.691 191 98 0 148 338 115 305 2.28e-72 228
Msa1337880 AT1G13635.1 48.691 191 98 0 148 338 115 305 2.28e-72 228
Msa1337880 AT3G12710.1 50.000 190 93 1 148 337 122 309 2.24e-66 213
Msa1337880 AT5G44680.1 49.495 198 88 2 145 337 161 351 5.79e-66 213

Find 140 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAATATACCTTTGATATT+TGG 0.167727 tig0001529:-12643 Msa1337880:intergenic
CATTAGTTGCTTCAGATTTC+AGG 0.175137 tig0001529:+14064 Msa1337880:CDS
AACACAAATCTTTCTAATTT+AGG 0.190089 tig0001529:-10871 Msa1337880:intergenic
GCTGATTGGATTTAAGAAAA+TGG 0.195009 tig0001529:-10581 Msa1337880:intergenic
ATTTCTTTGAAACCCAAAAT+TGG 0.214254 tig0001529:-10623 Msa1337880:intergenic
ACTGAGAAAGGCTGAGAAAT+TGG 0.233316 tig0001529:+11020 Msa1337880:CDS
GATCCAAGCACACCTCTTCT+TGG 0.242214 tig0001529:-11331 Msa1337880:intergenic
AGAAGCATCTTTCTTCTCTT+TGG 0.257673 tig0001529:-11061 Msa1337880:intergenic
CGAGAAAATGCTGGGGAAAA+AGG 0.273608 tig0001529:-10342 Msa1337880:intergenic
TGCTGTTGTATGAAGCTTTC+CGG 0.274511 tig0001529:+14335 Msa1337880:three_prime_UTR
CGGGAACCTGTCGGGGATAT+CGG 0.276657 tig0001529:-13923 Msa1337880:intergenic
TTGCTAATAACTTCAGCTTT+TGG 0.286287 tig0001529:-13954 Msa1337880:intergenic
CCGTCAGAAACAACACTTCT+TGG 0.294148 tig0001529:-11273 Msa1337880:intergenic
TTCATTTCATTTCATTATAC+AGG 0.297306 tig0001529:+14465 Msa1337880:three_prime_UTR
GGATGGAAGCCTTAACAAAT+TGG 0.319021 tig0001529:+14356 Msa1337880:three_prime_UTR
CAAAATTGGAAACCTATAAA+AGG 0.320600 tig0001529:-10609 Msa1337880:intergenic
ATTGGGCAAGGAGGTTGATT+TGG 0.323664 tig0001529:+11038 Msa1337880:CDS
CTGATTGGATTTAAGAAAAT+GGG 0.336198 tig0001529:-10580 Msa1337880:intergenic
GAGTGGAACAAACCAGTATT+AGG 0.345968 tig0001529:-11357 Msa1337880:intergenic
TTGAGCATCCTCATTCTTGA+TGG 0.348083 tig0001529:-14123 Msa1337880:intergenic
TATAAAAGGTTGAAGCTGAT+TGG 0.349710 tig0001529:-10595 Msa1337880:intergenic
TGGAAGCAAAATTAGGGTTT+AGG 0.358709 tig0001529:-10548 Msa1337880:intergenic
CGGTGATTGATTGTGTGTAT+TGG 0.369419 tig0001529:+10836 Msa1337880:five_prime_UTR
TCATGGAAAGCAGCATAATA+TGG 0.372996 tig0001529:-12133 Msa1337880:intergenic
TGCCAGGTCATAGTAGAGTT+TGG 0.373213 tig0001529:+13843 Msa1337880:intron
TTTGTGTTAATGTCAGCTTC+AGG 0.378827 tig0001529:+10886 Msa1337880:exon
GATGAATGCTTCGTGTTCTT+CGG 0.379133 tig0001529:+11155 Msa1337880:CDS
AACAATGCAGAACGGAATCT+TGG 0.379953 tig0001529:+10478 Msa1337880:five_prime_UTR
GGTCATTCGACAATTACATT+TGG 0.384849 tig0001529:+13865 Msa1337880:CDS
AAGGAACTTGTAGTGGTTCC+TGG 0.388803 tig0001529:-12578 Msa1337880:intergenic
AGAATGAATCACAGTAAATC+TGG 0.393677 tig0001529:+14214 Msa1337880:exon
TTCTTGGATTGTGCACCATC+AGG 0.399421 tig0001529:-11315 Msa1337880:intergenic
AATTCTACACCAATTTGTTA+AGG 0.403877 tig0001529:-14365 Msa1337880:intergenic
TTTCATAGCCGAGCTTCTAC+TGG 0.408353 tig0001529:+11195 Msa1337880:CDS
ATCACACTATCACATGCATT+TGG 0.411863 tig0001529:-14146 Msa1337880:intergenic
GTAAATCTGGTAGATCAAAT+AGG 0.412334 tig0001529:+14227 Msa1337880:three_prime_UTR
AGGCCTGTGTTTGGTCCTGC+TGG 0.417888 tig0001529:+10952 Msa1337880:CDS
CTGAGAAAGGCTGAGAAATT+GGG 0.429522 tig0001529:+11021 Msa1337880:CDS
CTGAGATTGAGTTATATTTG+AGG 0.439299 tig0001529:+14267 Msa1337880:three_prime_UTR
GCCAGGTCATAGTAGAGTTT+GGG 0.439992 tig0001529:+13844 Msa1337880:intron
CTCAAATATAACTCAATCTC+AGG 0.441220 tig0001529:-14266 Msa1337880:intergenic
TTGTGTATCAATCTCAAAGA+AGG 0.444043 tig0001529:+14295 Msa1337880:three_prime_UTR
ATACTCCTTCATGCAGGTGG+TGG 0.445350 tig0001529:+14022 Msa1337880:CDS
TGCTTTCCATGATGAAGAAT+GGG 0.446554 tig0001529:+12144 Msa1337880:CDS
AACGGAATCTTGGCCTTTCG+AGG 0.448830 tig0001529:+10488 Msa1337880:five_prime_UTR
AACTTCAATGCTACCTCAAA+AGG 0.451783 tig0001529:-10449 Msa1337880:intergenic
GCTTGGATCACTCCTAATAC+TGG 0.452177 tig0001529:+11345 Msa1337880:CDS
AGATTCATGAACTCTTCTTA+AGG 0.455774 tig0001529:+10400 Msa1337880:five_prime_UTR
CTCAAAATTAAATGAGAAGA+AGG 0.457503 tig0001529:+12547 Msa1337880:CDS
TACTCCTTCATGCAGGTGGT+GGG 0.461248 tig0001529:+14023 Msa1337880:CDS
GGGTCACTTCATTGTGCACC+AGG 0.462816 tig0001529:+10696 Msa1337880:five_prime_UTR
ACATACTTGTCGTCATGTAC+TGG 0.466966 tig0001529:-12172 Msa1337880:intergenic
TGCTTCAAAGCCACTGAGAA+AGG 0.468747 tig0001529:+11008 Msa1337880:CDS
AGAGAGAGAAGGAAGAGTGT+GGG 0.470579 tig0001529:-10309 Msa1337880:intergenic
TTTACTGATCCAGTGTTAGC+AGG 0.482725 tig0001529:+14426 Msa1337880:three_prime_UTR
TCAGAAGCAAGGCCTGTGTT+TGG 0.484933 tig0001529:+10943 Msa1337880:CDS
CACATGTAGGAAACTGTTTG+AGG 0.486819 tig0001529:+12276 Msa1337880:intron
TTGGAATCTCCTCCTCCTGA+TGG 0.488289 tig0001529:+11300 Msa1337880:CDS
TATCGGAATTTGCTAAGTAT+AGG 0.490240 tig0001529:-13906 Msa1337880:intergenic
AAGAGAGAGAAGGAAGAGTG+TGG 0.491755 tig0001529:-10310 Msa1337880:intergenic
AGAAGAGGTTTCCGCGGTGT+GGG 0.494446 tig0001529:+13987 Msa1337880:CDS
ACATTCATAGACCTCAATCT+AGG 0.495280 tig0001529:-10913 Msa1337880:intergenic
GAATGTGTGGCTGCAGCAGA+AGG 0.497985 tig0001529:+14086 Msa1337880:CDS
TGTCTCTTGCTTAGAATGGC+TGG 0.501678 tig0001529:-12337 Msa1337880:intergenic
TTCCGTTCTGCATTGTTGAA+AGG 0.504358 tig0001529:-10472 Msa1337880:intergenic
CTGCTTTCCATGATGAAGAA+TGG 0.506293 tig0001529:+12143 Msa1337880:CDS
CAATTTCTGATCAGAGAGTA+AGG 0.506313 tig0001529:-12597 Msa1337880:intergenic
AATCCAAGAAGAGGTGTGCT+TGG 0.508627 tig0001529:+11328 Msa1337880:CDS
CGCGGAAACCTCTTCTCACC+AGG 0.511916 tig0001529:-13980 Msa1337880:intergenic
TGATTGATTGTGTGTATTGG+TGG 0.514796 tig0001529:+10839 Msa1337880:five_prime_UTR
TTGACTCGGTCTAATAGCTA+TGG 0.521589 tig0001529:+11222 Msa1337880:CDS
GAACCTGTCTTATTTCCAGC+AGG 0.522965 tig0001529:-10967 Msa1337880:intergenic
AATGTGTCTCTTGCTTAGAA+TGG 0.523823 tig0001529:-12341 Msa1337880:intergenic
GATTGATTGTGTGTATTGGT+GGG 0.528265 tig0001529:+10840 Msa1337880:five_prime_UTR
GGTCCTGCTGGAAATAAGAC+AGG 0.532123 tig0001529:+10964 Msa1337880:CDS
TGTTGTTTCTGACGGTGTGT+TGG 0.536773 tig0001529:+11281 Msa1337880:CDS
GGACAAACTCAAATTATCAA+TGG 0.537441 tig0001529:-14189 Msa1337880:intergenic
ACTCAAATTATCAATGGCAA+TGG 0.539519 tig0001529:-14183 Msa1337880:intergenic
ACCTCAAAAGGTTGGCGCCA+CGG 0.539586 tig0001529:-10437 Msa1337880:intergenic
GAGAGAGAAGGAAGAGTGTG+GGG 0.544795 tig0001529:-10308 Msa1337880:intergenic
CTTCAGATTTCAGGAATGTG+TGG 0.546257 tig0001529:+14073 Msa1337880:CDS
CTTCAGGAGGTCCTAGATTG+AGG 0.547316 tig0001529:+10902 Msa1337880:CDS
ATTTACTGTGATTCATTCTG+AGG 0.549011 tig0001529:-14210 Msa1337880:intergenic
GAGAAGAGGTTTCCGCGGTG+TGG 0.552325 tig0001529:+13986 Msa1337880:CDS
GAACTCCCCATTCTTCATCA+TGG 0.554190 tig0001529:-12150 Msa1337880:intergenic
TTTCAAAAGGGTGTGTAGTG+AGG 0.554978 tig0001529:+10790 Msa1337880:five_prime_UTR
TTTCCGCGGTGTGGGTCCCA+CGG 0.558212 tig0001529:+13995 Msa1337880:CDS
ATTTGCTAAGTATAGGCTTG+TGG 0.560857 tig0001529:-13899 Msa1337880:intergenic
CCAAGAAGTGTTGTTTCTGA+CGG 0.562851 tig0001529:+11273 Msa1337880:CDS
TGTGTATCAATCTCAAAGAA+GGG 0.565652 tig0001529:+14296 Msa1337880:three_prime_UTR
CTCTCTGATCAGAAATTGCG+TGG 0.565696 tig0001529:+12602 Msa1337880:CDS
AATTTGTTAAGGCTTCCATC+CGG 0.568096 tig0001529:-14354 Msa1337880:intergenic
GATGAAAATGAAGAGAGAGA+AGG 0.570404 tig0001529:-10320 Msa1337880:intergenic
ACTCCTTCATGCAGGTGGTG+GGG 0.578093 tig0001529:+14024 Msa1337880:CDS
GGCTGCAGCAGAAGGGAAGG+AGG 0.580433 tig0001529:+14094 Msa1337880:CDS
GAAATCTGAAGCAACTAATG+AGG 0.581296 tig0001529:-14061 Msa1337880:intergenic
GGAGAATTCCATCAAGAATG+AGG 0.581395 tig0001529:+14115 Msa1337880:CDS
CAAATTCCGATATCCCCGAC+AGG 0.584407 tig0001529:+13917 Msa1337880:CDS
AGCAAAGACCTGGTGAGAAG+AGG 0.585041 tig0001529:+13972 Msa1337880:CDS
GTGCTCTATCTGAACTCACT+TGG 0.585688 tig0001529:+12314 Msa1337880:CDS
TGTGGCTGCAGCAGAAGGGA+AGG 0.588302 tig0001529:+14091 Msa1337880:CDS
TCAATCTTCCAGTAGAAGCT+CGG 0.588776 tig0001529:-11203 Msa1337880:intergenic
TCAATGCTACCTCAAAAGGT+TGG 0.594649 tig0001529:-10445 Msa1337880:intergenic
AATTTCTCAGCCTTTCTCAG+TGG 0.596074 tig0001529:-11018 Msa1337880:intergenic
TTGGATTGTGCACCATCAGG+AGG 0.596535 tig0001529:-11312 Msa1337880:intergenic
ATCTGAAGCAACTAATGAGG+TGG 0.598594 tig0001529:-14058 Msa1337880:intergenic
GTGTTAATGTCAGCTTCAGG+AGG 0.603358 tig0001529:+10889 Msa1337880:exon
CTTCTACTGGAAGATTGACT+CGG 0.603962 tig0001529:+11208 Msa1337880:CDS
GATTGTGCACCATCAGGAGG+AGG 0.608674 tig0001529:-11309 Msa1337880:intergenic
TATCTATTACCTGCTAACAC+TGG 0.609178 tig0001529:-14435 Msa1337880:intergenic
AGAGAGTAAGGAACTTGTAG+TGG 0.609547 tig0001529:-12585 Msa1337880:intergenic
TAACCCCACCACCTGCATGA+AGG 0.610546 tig0001529:-14027 Msa1337880:intergenic
GAATGCACGCCAAATATCAA+AGG 0.612654 tig0001529:+12634 Msa1337880:CDS
TCAAACAAAGAAAGAAAGCA+AGG 0.615816 tig0001529:-10271 Msa1337880:intergenic
GGTCATATACTCCTTCATGC+AGG 0.616386 tig0001529:+14016 Msa1337880:CDS
CATATACTCCTTCATGCAGG+TGG 0.620564 tig0001529:+14019 Msa1337880:CDS
CTAATAGCTATGGTTTGACA+AGG 0.620795 tig0001529:+11232 Msa1337880:CDS
TTCCTTTCAACAATGCAGAA+CGG 0.621013 tig0001529:+10470 Msa1337880:five_prime_UTR
AAATGCATGTGATAGTGTGA+TGG 0.629136 tig0001529:+14148 Msa1337880:CDS
AATGTGTGGCTGCAGCAGAA+GGG 0.629409 tig0001529:+14087 Msa1337880:CDS
TGAAGTTATTAGCAAAGACC+TGG 0.634551 tig0001529:+13962 Msa1337880:CDS
GGCTGAGAAATTGGGCAAGG+AGG 0.635303 tig0001529:+11029 Msa1337880:CDS
GCTATGGTTTGACAAGGAAG+CGG 0.636905 tig0001529:+11238 Msa1337880:CDS
TAGCTGAAGAGAACCTCGAA+AGG 0.638602 tig0001529:-10501 Msa1337880:intergenic
ATGGTGCACAATCCAAGAAG+AGG 0.638802 tig0001529:+11319 Msa1337880:CDS
GAGAAGAAGGTGATAACACC+AGG 0.639020 tig0001529:+12560 Msa1337880:CDS
TTTCCAGCAGGACCAAACAC+AGG 0.641381 tig0001529:-10955 Msa1337880:intergenic
GCGCAACACTGAAGAAACAC+TGG 0.647990 tig0001529:-11100 Msa1337880:intergenic
ATGTTGCTGACTCAGAAGCA+AGG 0.650117 tig0001529:+10932 Msa1337880:CDS
TCGGCTATGAAACGAGTCTG+TGG 0.650238 tig0001529:-11184 Msa1337880:intergenic
AAAGGCTGAGAAATTGGGCA+AGG 0.650312 tig0001529:+11026 Msa1337880:CDS
ATGAAGGAGTATATGACCGT+GGG 0.650909 tig0001529:-14011 Msa1337880:intergenic
GTTGTATGAAGCTTTCCGGA+TGG 0.655464 tig0001529:+14339 Msa1337880:three_prime_UTR
AATGCAACAACTGCTCATGT+CGG 0.657461 tig0001529:-11122 Msa1337880:intergenic
CATGAAGGAGTATATGACCG+TGG 0.677378 tig0001529:-14012 Msa1337880:intergenic
CTGGTGAGAAGAGGTTTCCG+CGG 0.690988 tig0001529:+13981 Msa1337880:CDS
AGGAACGTGTGTTATTACCG+TGG 0.703000 tig0001529:+10420 Msa1337880:five_prime_UTR
ACACTGGCAGAATGTGACTG+AGG 0.705590 tig0001529:-11084 Msa1337880:intergenic
GCTTTCCATGATGAAGAATG+GGG 0.729667 tig0001529:+12145 Msa1337880:CDS
TGACCGTGGGACCCACACCG+CGG 0.744972 tig0001529:-13998 Msa1337870:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTTCTAAATTTTTA+TGG + tig0001529:10743-10762 Msa1337880:five_prime_UTR 10.0%
!!! GTTTTTTTCTAAATTTTTAT+GGG + tig0001529:10744-10763 Msa1337880:five_prime_UTR 10.0%
!! TAAATCTTTAGTTATATATT+GGG + tig0001529:12752-12771 Msa1337880:intron 10.0%
!! TTGAAGAAATAAAAGAAATT+TGG - tig0001529:12393-12412 Msa1337880:intergenic 15.0%
!!! ATAACTAAAGATTTAGAATA+TGG - tig0001529:12747-12766 Msa1337880:intergenic 15.0%
!! CTAAATCTTTAGTTATATAT+TGG + tig0001529:12751-12770 Msa1337880:intron 15.0%
!! ATTTAATGATGATTTGATTA+GGG + tig0001529:13510-13529 Msa1337880:intron 15.0%
!!! TTTTATAGGTTTCCAATTTT+GGG + tig0001529:10611-10630 Msa1337880:five_prime_UTR 20.0%
!!! AAAATTCAAGATCTGTTTTT+GGG + tig0001529:10675-10694 Msa1337880:five_prime_UTR 20.0%
!!! TGATAATTAGAGTTTTCAAA+AGG + tig0001529:10777-10796 Msa1337880:five_prime_UTR 20.0%
!!! GATAATTAGAGTTTTCAAAA+GGG + tig0001529:10778-10797 Msa1337880:five_prime_UTR 20.0%
!! GTAAAAAAAGAAGAAGAATT+TGG + tig0001529:10812-10831 Msa1337880:five_prime_UTR 20.0%
!! AACACAAATCTTTCTAATTT+AGG - tig0001529:10874-10893 Msa1337880:intergenic 20.0%
!!! AAGTAAAATCTCAATTTTCA+AGG - tig0001529:11691-11710 Msa1337880:intergenic 20.0%
!! TTTAAATTCATAACTCCATT+TGG + tig0001529:11709-11728 Msa1337880:intron 20.0%
!! CTTATTCGCATTTATTTATA+TGG - tig0001529:11753-11772 Msa1337880:intergenic 20.0%
!!! TAGTTGTTGTTTTTTATCAT+TGG + tig0001529:11899-11918 Msa1337880:intron 20.0%
!!! TAAAAATAGTCTTGTTATGT+TGG + tig0001529:12205-12224 Msa1337880:intron 20.0%
!! ACTAATATACCTTTGATATT+TGG - tig0001529:12646-12665 Msa1337880:intergenic 20.0%
!!! TGATTTATTTTTTTTCCGAA+GGG - tig0001529:13230-13249 Msa1337880:intergenic 20.0%
!!! ATGATTTATTTTTTTTCCGA+AGG - tig0001529:13231-13250 Msa1337880:intergenic 20.0%
!!! ATATTTCTGTATTGATCTTT+TGG + tig0001529:13255-13274 Msa1337880:intron 20.0%
!! AAGTCGAATAATTTCATAAA+AGG + tig0001529:13299-13318 Msa1337880:intron 20.0%
!! AGTCGAATAATTTCATAAAA+GGG + tig0001529:13300-13319 Msa1337880:intron 20.0%
!!! AAGCCTTTTTTTTCAAAAAA+GGG - tig0001529:13380-13399 Msa1337880:intergenic 20.0%
!!! TATAATTACCATTGATAATG+AGG + tig0001529:13441-13460 Msa1337880:intron 20.0%
!!! ATAATTACCATTGATAATGA+GGG + tig0001529:13442-13461 Msa1337880:intron 20.0%
!! CATTTAATGATGATTTGATT+AGG + tig0001529:13509-13528 Msa1337880:intron 20.0%
!! TCTAGATAATAAAGGTAATT+GGG + tig0001529:13536-13555 Msa1337880:intron 20.0%
!! ATTGTGACAAATTAGAATAT+AGG - tig0001529:13642-13661 Msa1337880:intergenic 20.0%
!! GTTAAAGAATCCAAATAATT+AGG - tig0001529:13674-13693 Msa1337880:intergenic 20.0%
!! TTCATTTCATTTCATTATAC+AGG + tig0001529:14465-14484 Msa1337880:three_prime_UTR 20.0%
!!! TTCATGAATCTATTTTTTCC+TGG - tig0001529:10391-10410 Msa1337880:intergenic 25.0%
!!! ACTTTTTGGAAGCAAAATTA+GGG - tig0001529:10557-10576 Msa1337880:intergenic 25.0%
! CTGATTGGATTTAAGAAAAT+GGG - tig0001529:10583-10602 Msa1337880:intergenic 25.0%
! CAAAATTGGAAACCTATAAA+AGG - tig0001529:10612-10631 Msa1337880:intergenic 25.0%
!! CTTTTATAGGTTTCCAATTT+TGG + tig0001529:10610-10629 Msa1337880:five_prime_UTR 25.0%
!!! ATTTCTTTGAAACCCAAAAT+TGG - tig0001529:10626-10645 Msa1337880:intergenic 25.0%
!!! AATTTTGGGTTTCAAAGAAA+TGG + tig0001529:10625-10644 Msa1337880:five_prime_UTR 25.0%
!!! ATTTTGGGTTTCAAAGAAAT+GGG + tig0001529:10626-10645 Msa1337880:five_prime_UTR 25.0%
!! GAAAATTCAAGATCTGTTTT+TGG + tig0001529:10674-10693 Msa1337880:five_prime_UTR 25.0%
!!! AAATTCAAGATCTGTTTTTG+GGG + tig0001529:10676-10695 Msa1337880:five_prime_UTR 25.0%
! AAAAAGAAGAAGAATTTGGT+CGG + tig0001529:10816-10835 Msa1337880:five_prime_UTR 25.0%
! TTAAGAAATCAAGGAAATTG+GGG - tig0001529:11386-11405 Msa1337880:intergenic 25.0%
! CTTAAGAAATCAAGGAAATT+GGG - tig0001529:11387-11406 Msa1337880:intergenic 25.0%
! TCTTAAGAAATCAAGGAAAT+TGG - tig0001529:11388-11407 Msa1337880:intergenic 25.0%
! AATGTCTTCTTAAGAAATCA+AGG - tig0001529:11395-11414 Msa1337880:intergenic 25.0%
! TGATTTCTTAAGAAGACATT+TGG + tig0001529:11395-11414 Msa1337880:intron 25.0%
!!! GAGTGATTTTAAAACATCAT+GGG + tig0001529:11417-11436 Msa1337880:intron 25.0%
!!! TTTTTTTTCCTGTATATGTG+TGG + tig0001529:11475-11494 Msa1337880:intron 25.0%
!! GTAGTTTAATTTCATTCATC+TGG + tig0001529:11579-11598 Msa1337880:intron 25.0%
! ATAATATGTTGATGTCCAAA+TGG - tig0001529:11727-11746 Msa1337880:intergenic 25.0%
! TTTATCATTGGAGAGAAAAT+TGG + tig0001529:11911-11930 Msa1337880:intron 25.0%
! TTATCATTGGAGAGAAAATT+GGG + tig0001529:11912-11931 Msa1337880:intron 25.0%
!!! TATTAAGTTCTGAACTACTT+TGG + tig0001529:12058-12077 Msa1337880:intron 25.0%
!! AAATGTAGCCAATTTTATCA+TGG + tig0001529:12412-12431 Msa1337880:intron 25.0%
! CAAAGTCAAAGAGAAAAAAA+TGG - tig0001529:12460-12479 Msa1337880:intergenic 25.0%
! CTCAAAATTAAATGAGAAGA+AGG + tig0001529:12547-12566 Msa1337880:CDS 25.0%
! AGTTATATATTGGGTGTATA+TGG + tig0001529:12761-12780 Msa1337880:intron 25.0%
! GTTATATATTGGGTGTATAT+GGG + tig0001529:12762-12781 Msa1337880:intron 25.0%
! AGATATATATTGGGTGTATA+TGG + tig0001529:12841-12860 Msa1337880:intron 25.0%
!! TATGGTTCTTTTGGTATAAT+TGG + tig0001529:12859-12878 Msa1337880:intron 25.0%
! ATGAATAAAGTGTAATTCTG+AGG + tig0001529:13147-13166 Msa1337880:intron 25.0%
! TGAATAAAGTGTAATTCTGA+GGG + tig0001529:13148-13167 Msa1337880:intron 25.0%
!!! CTTCCCTTTTTTGAAAAAAA+AGG + tig0001529:13374-13393 Msa1337880:intron 25.0%
!!! CAAGCCTTTTTTTTCAAAAA+AGG - tig0001529:13381-13400 Msa1337880:intergenic 25.0%
! GTCTAGATAATAAAGGTAAT+TGG + tig0001529:13535-13554 Msa1337880:intron 25.0%
! TGTACGAAAGATTAATATCA+TGG - tig0001529:13609-13628 Msa1337880:intergenic 25.0%
! GAATTGTAGTGTTTAATGTT+AGG - tig0001529:13731-13750 Msa1337880:intergenic 25.0%
!!! AATTCTACACCAATTTGTTA+AGG - tig0001529:14368-14387 Msa1337880:intergenic 25.0%
TCAAACAAAGAAAGAAAGCA+AGG - tig0001529:10274-10293 None:intergenic 30.0%
! AAATTTTGCGAGAAAATGCT+GGG - tig0001529:10353-10372 None:intergenic 30.0%
AGATTCATGAACTCTTCTTA+AGG + tig0001529:10400-10419 Msa1337880:five_prime_UTR 30.0%
!! GACTTTTTGGAAGCAAAATT+AGG - tig0001529:10558-10577 Msa1337880:intergenic 30.0%
!!! AAGAAAATGGGTTGACTTTT+TGG - tig0001529:10571-10590 Msa1337880:intergenic 30.0%
GCTGATTGGATTTAAGAAAA+TGG - tig0001529:10584-10603 Msa1337880:intergenic 30.0%
TATAAAAGGTTGAAGCTGAT+TGG - tig0001529:10598-10617 Msa1337880:intergenic 30.0%
! AATCAGCTTCAACCTTTTAT+AGG + tig0001529:10597-10616 Msa1337880:five_prime_UTR 30.0%
!!! TTTTGGGTTTCAAAGAAATG+GGG + tig0001529:10627-10646 Msa1337880:five_prime_UTR 30.0%
!!! GGAGTGATTTTAAAACATCA+TGG + tig0001529:11416-11435 Msa1337880:intron 30.0%
TTAAACACATAATTATGCCC+CGG - tig0001529:11443-11462 Msa1337880:intergenic 30.0%
ACTATGAACTATCCTACAAA+AGG - tig0001529:11508-11527 Msa1337880:intergenic 30.0%
TTGTAGGATAGTTCATAGTT+CGG + tig0001529:11509-11528 Msa1337880:intron 30.0%
CTGAATTGCTTTCACATATA+TGG + tig0001529:11551-11570 Msa1337880:intron 30.0%
AATTGCTTTCACATATATGG+CGG + tig0001529:11554-11573 Msa1337880:intron 30.0%
! TTTCATTCATCTGGTTTCAT+TGG + tig0001529:11588-11607 Msa1337880:intron 30.0%
TCAAATATTCATTCGTGCAA+TGG + tig0001529:11818-11837 Msa1337880:intron 30.0%
CAAATATTCATTCGTGCAAT+GGG + tig0001529:11819-11838 Msa1337880:intron 30.0%
ATTGATCTATATCCAGTTTG+CGG - tig0001529:11958-11977 Msa1337880:intergenic 30.0%
! CTAGTTCTCATTCATTCATA+TGG - tig0001529:11993-12012 Msa1337880:intergenic 30.0%
AGAAATTTCCAGTAAAGGTA+TGG - tig0001529:12016-12035 Msa1337880:intergenic 30.0%
TGTAGAGAAATTTCCAGTAA+AGG - tig0001529:12021-12040 Msa1337880:intergenic 30.0%
TCAACAAGTAAACTTAGTCA+GGG - tig0001529:12105-12124 Msa1337880:intergenic 30.0%
ATCAACAAGTAAACTTAGTC+AGG - tig0001529:12106-12125 Msa1337880:intergenic 30.0%
!! AATAGTCTTGTTATGTTGGT+TGG + tig0001529:12209-12228 Msa1337880:intron 30.0%
! ATCCTCCATTAAATTTTGCT+TGG + tig0001529:12243-12262 Msa1337880:intron 30.0%
! TAAGCAAGAGACACATTTTT+AGG + tig0001529:12347-12366 Msa1337880:CDS 30.0%
GAAAAAAATGGCTACATATG+AGG - tig0001529:12448-12467 Msa1337880:intergenic 30.0%
!!! TTTAATTTTGAGACAGCAAC+TGG - tig0001529:12539-12558 Msa1337880:intergenic 30.0%
ATTGTAGAATATACCCTCTT+GGG + tig0001529:12690-12709 Msa1337880:intron 30.0%
AATTATGATCTAACCCAAGA+GGG - tig0001529:12706-12725 Msa1337880:intergenic 30.0%
TAATTATGATCTAACCCAAG+AGG - tig0001529:12707-12726 Msa1337880:intergenic 30.0%
GGTTAGATCATAATTACTTG+TGG + tig0001529:12711-12730 Msa1337880:intron 30.0%
! ATGGGTTCTTTTGGTATAAT+TGG + tig0001529:12780-12799 Msa1337880:intron 30.0%
! TGGGTTCTTTTGGTATAATT+GGG + tig0001529:12781-12800 Msa1337880:intron 30.0%
TCCCTTGAGTAGATATATAT+TGG + tig0001529:12831-12850 Msa1337880:intron 30.0%
CCCAATATATATCTACTCAA+GGG - tig0001529:12835-12854 Msa1337880:intergenic 30.0%
CCCTTGAGTAGATATATATT+GGG + tig0001529:12832-12851 Msa1337880:intron 30.0%
ACCCAATATATATCTACTCA+AGG - tig0001529:12836-12855 Msa1337880:intergenic 30.0%
! AGCTCTCTCAAGATTTTTAA+CGG + tig0001529:12946-12965 Msa1337880:intron 30.0%
GAGTACTATAACAAAGATCT+CGG - tig0001529:13414-13433 Msa1337880:intergenic 30.0%
!! ATTGATAATGAGGGACTAAT+GGG + tig0001529:13451-13470 Msa1337880:intron 30.0%
TAATGATGATTTGATTAGGG+AGG + tig0001529:13513-13532 Msa1337880:intron 30.0%
! TAATAAAGGTAATTGGGTTG+TGG + tig0001529:13542-13561 Msa1337880:intron 30.0%
!! TTTAATTTGCATGACCCATA+TGG + tig0001529:13577-13596 Msa1337880:intron 30.0%
!! TTAATTTGCATGACCCATAT+GGG + tig0001529:13578-13597 Msa1337880:intron 30.0%
TGATGTGAGACCTAATTATT+TGG + tig0001529:13661-13680 Msa1337880:intron 30.0%
!! TATCGGAATTTGCTAAGTAT+AGG - tig0001529:13909-13928 Msa1337880:intergenic 30.0%
!!! TTCAGCTTTTGGTGTTTTAA+CGG - tig0001529:13946-13965 Msa1337880:intergenic 30.0%
! TTGCTAATAACTTCAGCTTT+TGG - tig0001529:13957-13976 Msa1337880:intergenic 30.0%
ACTCAAATTATCAATGGCAA+TGG - tig0001529:14186-14205 Msa1337880:intergenic 30.0%
GGACAAACTCAAATTATCAA+TGG - tig0001529:14192-14211 Msa1337880:intergenic 30.0%
ATTTACTGTGATTCATTCTG+AGG - tig0001529:14213-14232 Msa1337880:intergenic 30.0%
AGAATGAATCACAGTAAATC+TGG + tig0001529:14214-14233 Msa1337880:exon 30.0%
GTAAATCTGGTAGATCAAAT+AGG + tig0001529:14227-14246 Msa1337880:three_prime_UTR 30.0%
CTCAAATATAACTCAATCTC+AGG - tig0001529:14269-14288 Msa1337880:intergenic 30.0%
CTGAGATTGAGTTATATTTG+AGG + tig0001529:14267-14286 Msa1337880:three_prime_UTR 30.0%
TTGTGTATCAATCTCAAAGA+AGG + tig0001529:14295-14314 Msa1337880:three_prime_UTR 30.0%
TGTGTATCAATCTCAAAGAA+GGG + tig0001529:14296-14315 Msa1337880:three_prime_UTR 30.0%
GATGAAAATGAAGAGAGAGA+AGG - tig0001529:10323-10342 None:intergenic 35.0%
! AATTTTGCGAGAAAATGCTG+GGG - tig0001529:10352-10371 None:intergenic 35.0%
! GAAATTTTGCGAGAAAATGC+TGG - tig0001529:10354-10373 None:intergenic 35.0%
! TTTCTCTGCTACTATTTTCC+AGG + tig0001529:10370-10389 Msa1337880:five_prime_UTR 35.0%
AACTTCAATGCTACCTCAAA+AGG - tig0001529:10452-10471 Msa1337880:intergenic 35.0%
TTCCTTTCAACAATGCAGAA+CGG + tig0001529:10470-10489 Msa1337880:five_prime_UTR 35.0%
TGGAAGCAAAATTAGGGTTT+AGG - tig0001529:10551-10570 Msa1337880:intergenic 35.0%
! GTTTTCGTAGTTCACTTTGA+AGG + tig0001529:10649-10668 Msa1337880:five_prime_UTR 35.0%
! TCGAACTTTTAACAAACACC+TGG - tig0001529:10717-10736 Msa1337880:intergenic 35.0%
TGATTGATTGTGTGTATTGG+TGG + tig0001529:10839-10858 Msa1337880:five_prime_UTR 35.0%
! GATTGATTGTGTGTATTGGT+GGG + tig0001529:10840-10859 Msa1337880:five_prime_UTR 35.0%
TTTGTGTTAATGTCAGCTTC+AGG + tig0001529:10886-10905 Msa1337880:exon 35.0%
ACATTCATAGACCTCAATCT+AGG - tig0001529:10916-10935 Msa1337880:intergenic 35.0%
!! AGAAGCATCTTTCTTCTCTT+TGG - tig0001529:11064-11083 Msa1337880:intergenic 35.0%
CTAATAGCTATGGTTTGACA+AGG + tig0001529:11232-11251 Msa1337880:CDS 35.0%
!!! GATTTTAAAACATCATGGGC+CGG + tig0001529:11421-11440 Msa1337880:intron 35.0%
!!! ATTTTAAAACATCATGGGCC+GGG + tig0001529:11422-11441 Msa1337880:intron 35.0%
! AGTTCGGTTCATGATACTTT+TGG + tig0001529:11525-11544 Msa1337880:intron 35.0%
! AATGGGTTTGTAGCCAAAAT+GGG + tig0001529:11836-11855 Msa1337880:intron 35.0%
! TTGCATGTTTTACCCCATTT+TGG - tig0001529:11852-11871 Msa1337880:intergenic 35.0%
AAATGGGGTAAAACATGCAA+TGG + tig0001529:11852-11871 Msa1337880:intron 35.0%
TGGACATGTACCTCTTATTA+TGG + tig0001529:11872-11891 Msa1337880:intron 35.0%
GGACATGTACCTCTTATTAT+GGG + tig0001529:11873-11892 Msa1337880:intron 35.0%
CAACTATAGCCCATAATAAG+AGG - tig0001529:11885-11904 Msa1337880:intergenic 35.0%
TCTCATTCATTCATATGGAG+TGG - tig0001529:11988-12007 Msa1337880:intergenic 35.0%
TCATGGAAAGCAGCATAATA+TGG - tig0001529:12136-12155 Msa1337880:intergenic 35.0%
TGCTTTCCATGATGAAGAAT+GGG + tig0001529:12144-12163 Msa1337880:CDS 35.0%
! CTTGTTATGTTGGTTGGAAA+AGG + tig0001529:12215-12234 Msa1337880:intron 35.0%
TGCCAAGCAAAATTTAATGG+AGG - tig0001529:12248-12267 Msa1337880:intergenic 35.0%
GAGTGCCAAGCAAAATTTAA+TGG - tig0001529:12251-12270 Msa1337880:intergenic 35.0%
AATGTGTCTCTTGCTTAGAA+TGG - tig0001529:12344-12363 Msa1337880:intergenic 35.0%
TTGTTAACAAAGTCCTTTGC+AGG + tig0001529:12492-12511 Msa1337880:intron 35.0%
TGTTAACAAAGTCCTTTGCA+GGG + tig0001529:12493-12512 Msa1337880:intron 35.0%
CAATTTCTGATCAGAGAGTA+AGG - tig0001529:12600-12619 Msa1337880:intergenic 35.0%
! GAGGGTATATTCTACAATGA+AGG - tig0001529:12688-12707 Msa1337880:intergenic 35.0%
CATTGTAGAATATACCCTCT+TGG + tig0001529:12689-12708 Msa1337880:intron 35.0%
! TTGGGTGTATATGGTTCTTT+TGG + tig0001529:12850-12869 Msa1337880:intron 35.0%
TTGTGTCATACTCTACTCAA+GGG - tig0001529:12916-12935 Msa1337880:intergenic 35.0%
ATTGTGTCATACTCTACTCA+AGG - tig0001529:12917-12936 Msa1337880:intergenic 35.0%
TTGAGTAGAGTATGACACAA+TGG + tig0001529:12916-12935 Msa1337880:intron 35.0%
TGAGTAGAGTATGACACAAT+GGG + tig0001529:12917-12936 Msa1337880:intron 35.0%
! TTTAACGGTGCTTCATTTTC+AGG + tig0001529:12961-12980 Msa1337880:intron 35.0%
! TTAACGGTGCTTCATTTTCA+GGG + tig0001529:12962-12981 Msa1337880:intron 35.0%
ATGGGCTTAATAACATGTCT+AGG + tig0001529:13064-13083 Msa1337880:intron 35.0%
GTATATAGTACCACCTAGAA+CGG - tig0001529:13109-13128 Msa1337880:intergenic 35.0%
! AAGTGTAATTCTGAGGGTTT+CGG + tig0001529:13154-13173 Msa1337880:intron 35.0%
TTCGACTTACTTTCCTAGTT+AGG - tig0001529:13287-13306 Msa1337880:intergenic 35.0%
CATTAGTCCCTCATTATCAA+TGG - tig0001529:13452-13471 Msa1337880:intergenic 35.0%
!! CATTGATAATGAGGGACTAA+TGG + tig0001529:13450-13469 Msa1337880:intron 35.0%
TAGGGAGGTCTAGATAATAA+AGG + tig0001529:13528-13547 Msa1337880:intron 35.0%
ATGCAAATTAAATGAGGACC+AGG - tig0001529:13569-13588 Msa1337880:intergenic 35.0%
TGGGTCATGCAAATTAAATG+AGG - tig0001529:13575-13594 Msa1337880:intergenic 35.0%
! TATCATGGTTTGTCCCATAT+GGG - tig0001529:13594-13613 Msa1337880:intergenic 35.0%
! ATATCATGGTTTGTCCCATA+TGG - tig0001529:13595-13614 Msa1337880:intergenic 35.0%
AATTGTGCAGAGTGCAATTA+TGG - tig0001529:13771-13790 Msa1337880:intergenic 35.0%
GGTCATTCGACAATTACATT+TGG + tig0001529:13865-13884 Msa1337880:CDS 35.0%
! ATTTGCTAAGTATAGGCTTG+TGG - tig0001529:13902-13921 Msa1337880:intergenic 35.0%
!!! TCAGCTTTTGGTGTTTTAAC+GGG - tig0001529:13945-13964 Msa1337880:intergenic 35.0%
TGAAGTTATTAGCAAAGACC+TGG + tig0001529:13962-13981 Msa1337880:CDS 35.0%
! GAAATCTGAAGCAACTAATG+AGG - tig0001529:14064-14083 Msa1337880:intergenic 35.0%
CATTAGTTGCTTCAGATTTC+AGG + tig0001529:14064-14083 Msa1337880:CDS 35.0%
ATCACACTATCACATGCATT+TGG - tig0001529:14149-14168 Msa1337880:intergenic 35.0%
! AAATGCATGTGATAGTGTGA+TGG + tig0001529:14148-14167 Msa1337880:CDS 35.0%
!! AATTTGTTAAGGCTTCCATC+CGG - tig0001529:14357-14376 Msa1337880:intergenic 35.0%
TATCTATTACCTGCTAACAC+TGG - tig0001529:14438-14457 Msa1337880:intergenic 35.0%
TCAATGCTACCTCAAAAGGT+TGG - tig0001529:10448-10467 Msa1337880:intergenic 40.0%
TTCCGTTCTGCATTGTTGAA+AGG - tig0001529:10475-10494 Msa1337880:intergenic 40.0%
AACAATGCAGAACGGAATCT+TGG + tig0001529:10478-10497 Msa1337880:five_prime_UTR 40.0%
! TTTCAAAAGGGTGTGTAGTG+AGG + tig0001529:10790-10809 Msa1337880:five_prime_UTR 40.0%
CGGTGATTGATTGTGTGTAT+TGG + tig0001529:10836-10855 Msa1337880:five_prime_UTR 40.0%
AATTTCTCAGCCTTTCTCAG+TGG - tig0001529:11021-11040 Msa1337880:intergenic 40.0%
ACTGAGAAAGGCTGAGAAAT+TGG + tig0001529:11020-11039 Msa1337880:CDS 40.0%
CTGAGAAAGGCTGAGAAATT+GGG + tig0001529:11021-11040 Msa1337880:CDS 40.0%
AATGCAACAACTGCTCATGT+CGG - tig0001529:11125-11144 Msa1337880:intergenic 40.0%
GATGAATGCTTCGTGTTCTT+CGG + tig0001529:11155-11174 Msa1337880:CDS 40.0%
TCAATCTTCCAGTAGAAGCT+CGG - tig0001529:11206-11225 Msa1337880:intergenic 40.0%
CTTCTACTGGAAGATTGACT+CGG + tig0001529:11208-11227 Msa1337880:CDS 40.0%
!! TTGACTCGGTCTAATAGCTA+TGG + tig0001529:11222-11241 Msa1337880:CDS 40.0%
!! CCAAGAAGTGTTGTTTCTGA+CGG + tig0001529:11273-11292 Msa1337880:CDS 40.0%
GAGTGGAACAAACCAGTATT+AGG - tig0001529:11360-11379 Msa1337880:intergenic 40.0%
GAAATCAAGGAAATTGGGGA+AGG - tig0001529:11382-11401 Msa1337880:intergenic 40.0%
!!! TTTTAAAACATCATGGGCCG+GGG + tig0001529:11423-11442 Msa1337880:intron 40.0%
! CAATGGGTTTGTAGCCAAAA+TGG + tig0001529:11835-11854 Msa1337880:intron 40.0%
ATGGGTTTGTAGCCAAAATG+GGG + tig0001529:11837-11856 Msa1337880:intron 40.0%
AGAACTAGCCATACCTTTAC+TGG + tig0001529:12005-12024 Msa1337880:intron 40.0%
CTGCTTTCCATGATGAAGAA+TGG + tig0001529:12143-12162 Msa1337880:CDS 40.0%
GCTTTCCATGATGAAGAATG+GGG + tig0001529:12145-12164 Msa1337880:CDS 40.0%
ACATACTTGTCGTCATGTAC+TGG - tig0001529:12175-12194 Msa1337880:intergenic 40.0%
TGGCACTCTTTATCACATGT+AGG + tig0001529:12263-12282 Msa1337880:intron 40.0%
CACATGTAGGAAACTGTTTG+AGG + tig0001529:12276-12295 Msa1337880:intron 40.0%
! GTAGCCAATTTTATCATGGC+TGG + tig0001529:12416-12435 Msa1337880:intron 40.0%
AGAGAGTAAGGAACTTGTAG+TGG - tig0001529:12588-12607 Msa1337880:intergenic 40.0%
GAATGCACGCCAAATATCAA+AGG + tig0001529:12634-12653 Msa1337880:CDS 40.0%
! TGGGTGTATATGGGTTCTTT+TGG + tig0001529:12771-12790 Msa1337880:intron 40.0%
ATAATTGGGTATCCTTCACC+CGG + tig0001529:12795-12814 Msa1337880:intron 40.0%
GTCTCTTCCAAATTAACCAG+AGG - tig0001529:13006-13025 Msa1337880:intergenic 40.0%
! CTGGTTAATTTGGAAGAGAC+CGG + tig0001529:13006-13025 Msa1337880:intron 40.0%
! AGTGTAATTCTGAGGGTTTC+GGG + tig0001529:13155-13174 Msa1337880:intron 40.0%
!! CTTTTGGAGAACACCTAACT+AGG + tig0001529:13271-13290 Msa1337880:intron 40.0%
ACTCTGCACAATTTGCATCA+CGG + tig0001529:13778-13797 Msa1337880:intron 40.0%
! CGTTGCAACTAACTTTTTGC+AGG + tig0001529:13811-13830 Msa1337880:intron 40.0%
! ATGAAGGAGTATATGACCGT+GGG - tig0001529:14014-14033 Msa1337880:intergenic 40.0%
! ATCTGAAGCAACTAATGAGG+TGG - tig0001529:14061-14080 Msa1337880:intergenic 40.0%
CTTCAGATTTCAGGAATGTG+TGG + tig0001529:14073-14092 Msa1337880:CDS 40.0%
GGAGAATTCCATCAAGAATG+AGG + tig0001529:14115-14134 Msa1337880:CDS 40.0%
TTGAGCATCCTCATTCTTGA+TGG - tig0001529:14126-14145 Msa1337880:intergenic 40.0%
TGCTGTTGTATGAAGCTTTC+CGG + tig0001529:14335-14354 Msa1337880:three_prime_UTR 40.0%
GGATGGAAGCCTTAACAAAT+TGG + tig0001529:14356-14375 Msa1337880:three_prime_UTR 40.0%
TTTACTGATCCAGTGTTAGC+AGG + tig0001529:14426-14445 Msa1337880:three_prime_UTR 40.0%
! AGAGAGAGAAGGAAGAGTGT+GGG - tig0001529:10312-10331 None:intergenic 45.0%
AAGAGAGAGAAGGAAGAGTG+TGG - tig0001529:10313-10332 None:intergenic 45.0%
CGAGAAAATGCTGGGGAAAA+AGG - tig0001529:10345-10364 None:intergenic 45.0%
! AGGAACGTGTGTTATTACCG+TGG + tig0001529:10420-10439 Msa1337880:five_prime_UTR 45.0%
TAGCTGAAGAGAACCTCGAA+AGG - tig0001529:10504-10523 Msa1337880:intergenic 45.0%
GTGTTAATGTCAGCTTCAGG+AGG + tig0001529:10889-10908 Msa1337880:exon 45.0%
!! ATGTTGCTGACTCAGAAGCA+AGG + tig0001529:10932-10951 Msa1337880:CDS 45.0%
!! GAACCTGTCTTATTTCCAGC+AGG - tig0001529:10970-10989 Msa1337880:intergenic 45.0%
TGCTTCAAAGCCACTGAGAA+AGG + tig0001529:11008-11027 Msa1337880:CDS 45.0%
AAAGGCTGAGAAATTGGGCA+AGG + tig0001529:11026-11045 Msa1337880:CDS 45.0%
! ATTGGGCAAGGAGGTTGATT+TGG + tig0001529:11038-11057 Msa1337880:CDS 45.0%
TTTCATAGCCGAGCTTCTAC+TGG + tig0001529:11195-11214 Msa1337880:CDS 45.0%
GCTATGGTTTGACAAGGAAG+CGG + tig0001529:11238-11257 Msa1337880:CDS 45.0%
CCGTCAGAAACAACACTTCT+TGG - tig0001529:11276-11295 Msa1337880:intergenic 45.0%
!! TGTTGTTTCTGACGGTGTGT+TGG + tig0001529:11281-11300 Msa1337880:CDS 45.0%
TTCTTGGATTGTGCACCATC+AGG - tig0001529:11318-11337 Msa1337880:intergenic 45.0%
ATGGTGCACAATCCAAGAAG+AGG + tig0001529:11319-11338 Msa1337880:CDS 45.0%
! AATCCAAGAAGAGGTGTGCT+TGG + tig0001529:11328-11347 Msa1337880:CDS 45.0%
GCTTGGATCACTCCTAATAC+TGG + tig0001529:11345-11364 Msa1337880:CDS 45.0%
! AAGAAGTACATGCCGCAAAC+TGG + tig0001529:11943-11962 Msa1337880:intron 45.0%
GAACTCCCCATTCTTCATCA+TGG - tig0001529:12153-12172 Msa1337880:intergenic 45.0%
GTGCTCTATCTGAACTCACT+TGG + tig0001529:12314-12333 Msa1337880:CDS 45.0%
TGTCTCTTGCTTAGAATGGC+TGG - tig0001529:12340-12359 Msa1337880:intergenic 45.0%
GCAGCCAGCCATGATAAAAT+TGG - tig0001529:12423-12442 Msa1337880:intergenic 45.0%
CAGCAAAAACTTCCCTGCAA+AGG - tig0001529:12508-12527 Msa1337880:intergenic 45.0%
GAGAAGAAGGTGATAACACC+AGG + tig0001529:12560-12579 Msa1337880:CDS 45.0%
AAGGAACTTGTAGTGGTTCC+TGG - tig0001529:12581-12600 Msa1337880:intergenic 45.0%
CTCTCTGATCAGAAATTGCG+TGG + tig0001529:12602-12621 Msa1337880:CDS 45.0%
AAGGGATTTCTCTGCAGTTC+CGG - tig0001529:12817-12836 Msa1337880:intergenic 45.0%
GGATTACTCTCTGCAGTTGT+GGG - tig0001529:12895-12914 Msa1337880:intergenic 45.0%
CCAAATTAACCAGAGGCCAT+GGG - tig0001529:12999-13018 Msa1337880:intergenic 45.0%
TCCAAATTAACCAGAGGCCA+TGG - tig0001529:13000-13019 Msa1337880:intergenic 45.0%
GCGTTTGGATGAGATGATTC+CGG - tig0001529:13028-13047 Msa1337880:intergenic 45.0%
TCATCTCATCCAAACGCTCT+TGG + tig0001529:13031-13050 Msa1337880:intron 45.0%
CATCTCATCCAAACGCTCTT+GGG + tig0001529:13032-13051 Msa1337880:intron 45.0%
!! GCTCTTGGGTTGGTGTATAT+GGG + tig0001529:13046-13065 Msa1337880:intron 45.0%
GTGATGTTACTAGCCGTTCT+AGG + tig0001529:13093-13112 Msa1337880:intron 45.0%
! ATGTTACTAGCCGTTCTAGG+TGG + tig0001529:13096-13115 Msa1337880:intron 45.0%
CAAACTGGCAACACATCAAG+CGG - tig0001529:13199-13218 Msa1337880:intergenic 45.0%
GCTTGATGTGTTGCCAGTTT+GGG + tig0001529:13198-13217 Msa1337880:intron 45.0%
CTTGATGTGTTGCCAGTTTG+GGG + tig0001529:13199-13218 Msa1337880:intron 45.0%
TTGATGTGTTGCCAGTTTGG+GGG + tig0001529:13200-13219 Msa1337880:intron 45.0%
CACATACCAGCTAAGCATGT+TGG - tig0001529:13700-13719 Msa1337880:intergenic 45.0%
! TTGCAGGTTTTACTGATGCC+AGG + tig0001529:13827-13846 Msa1337880:intron 45.0%
TGCCAGGTCATAGTAGAGTT+TGG + tig0001529:13843-13862 Msa1337880:intron 45.0%
GCCAGGTCATAGTAGAGTTT+GGG + tig0001529:13844-13863 Msa1337880:intron 45.0%
ACCCAAACTCTACTATGACC+TGG - tig0001529:13848-13867 Msa1337880:intergenic 45.0%
!!! TGTTTTAACGGGAACCTGTC+GGG - tig0001529:13934-13953 Msa1337880:intergenic 45.0%
!!! GTGTTTTAACGGGAACCTGT+CGG - tig0001529:13935-13954 Msa1337880:intergenic 45.0%
! CATGAAGGAGTATATGACCG+TGG - tig0001529:14015-14034 Msa1337880:intergenic 45.0%
GGTCATATACTCCTTCATGC+AGG + tig0001529:14016-14035 Msa1337880:CDS 45.0%
CATATACTCCTTCATGCAGG+TGG + tig0001529:14019-14038 Msa1337880:CDS 45.0%
GTTGTATGAAGCTTTCCGGA+TGG + tig0001529:14339-14358 Msa1337880:three_prime_UTR 45.0%
! GAGAGAGAAGGAAGAGTGTG+GGG - tig0001529:10311-10330 None:intergenic 50.0%
! AACGGAATCTTGGCCTTTCG+AGG + tig0001529:10488-10507 Msa1337880:five_prime_UTR 50.0%
CTTCAGGAGGTCCTAGATTG+AGG + tig0001529:10902-10921 Msa1337880:CDS 50.0%
TCAGAAGCAAGGCCTGTGTT+TGG + tig0001529:10943-10962 Msa1337880:CDS 50.0%
TTTCCAGCAGGACCAAACAC+AGG - tig0001529:10958-10977 Msa1337880:intergenic 50.0%
GGTCCTGCTGGAAATAAGAC+AGG + tig0001529:10964-10983 Msa1337880:CDS 50.0%
ACACTGGCAGAATGTGACTG+AGG - tig0001529:11087-11106 Msa1337880:intergenic 50.0%
GCGCAACACTGAAGAAACAC+TGG - tig0001529:11103-11122 Msa1337880:intergenic 50.0%
TCGGCTATGAAACGAGTCTG+TGG - tig0001529:11187-11206 Msa1337880:intergenic 50.0%
TTGGAATCTCCTCCTCCTGA+TGG + tig0001529:11300-11319 Msa1337880:CDS 50.0%
TTGGATTGTGCACCATCAGG+AGG - tig0001529:11315-11334 Msa1337880:intergenic 50.0%
GATCCAAGCACACCTCTTCT+TGG - tig0001529:11334-11353 Msa1337880:intergenic 50.0%
CAAGGAAATTGGGGAAGGAG+TGG - tig0001529:11377-11396 Msa1337880:intergenic 50.0%
GCACACAGCCACACATATAC+AGG - tig0001529:11486-11505 Msa1337880:intergenic 50.0%
! TGTGGCTGTGTGCCTTTTGT+AGG + tig0001529:11493-11512 Msa1337880:intron 50.0%
AGGGATTTCTCTGCAGTTCC+GGG - tig0001529:12816-12835 Msa1337880:intergenic 50.0%
GGGATTACTCTCTGCAGTTG+TGG - tig0001529:12896-12915 Msa1337880:intergenic 50.0%
!! CGGTGCTTCATTTTCAGGGT+TGG + tig0001529:12966-12985 Msa1337880:intron 50.0%
CAGGGTTGGATTTGAACCCA+TGG + tig0001529:12980-12999 Msa1337880:intron 50.0%
CCCATGGCCTCTGGTTAATT+TGG + tig0001529:12996-13015 Msa1337880:intron 50.0%
TCATCCAAACGCTCTTGGGT+TGG + tig0001529:13036-13055 Msa1337880:intron 50.0%
!! TACACCAACCCAAGAGCGTT+TGG - tig0001529:13043-13062 Msa1337880:intergenic 50.0%
!! CGCTCTTGGGTTGGTGTATA+TGG + tig0001529:13045-13064 Msa1337880:intron 50.0%
CGCTTGATGTGTTGCCAGTT+TGG + tig0001529:13197-13216 Msa1337880:intron 50.0%
! CAGTTTGGGGGTTTTCCCTT+CGG + tig0001529:13212-13231 Msa1337880:intron 50.0%
! AGGTAATTGGGTTGTGGTCC+TGG + tig0001529:13548-13567 Msa1337880:intron 50.0%
AACCAGCCAACATGCTTAGC+TGG + tig0001529:13691-13710 Msa1337880:intron 50.0%
TACCAGCTAAGCATGTTGGC+TGG - tig0001529:13696-13715 Msa1337880:intergenic 50.0%
CAAATTCCGATATCCCCGAC+AGG + tig0001529:13917-13936 Msa1337880:CDS 50.0%
!! GTTTTAACGGGAACCTGTCG+GGG - tig0001529:13933-13952 Msa1337880:intergenic 50.0%
AGCAAAGACCTGGTGAGAAG+AGG + tig0001529:13972-13991 Msa1337880:CDS 50.0%
ATACTCCTTCATGCAGGTGG+TGG + tig0001529:14022-14041 Msa1337880:CDS 50.0%
TACTCCTTCATGCAGGTGGT+GGG + tig0001529:14023-14042 Msa1337880:CDS 50.0%
AATGTGTGGCTGCAGCAGAA+GGG + tig0001529:14087-14106 Msa1337880:CDS 50.0%
ACCTCAAAAGGTTGGCGCCA+CGG - tig0001529:10440-10459 Msa1337880:intergenic 55.0%
GGGTCACTTCATTGTGCACC+AGG + tig0001529:10696-10715 Msa1337880:five_prime_UTR 55.0%
GGCTGAGAAATTGGGCAAGG+AGG + tig0001529:11029-11048 Msa1337880:CDS 55.0%
GATTGTGCACCATCAGGAGG+AGG - tig0001529:11312-11331 Msa1337880:intergenic 55.0%
TTCTCTGCAGTTCCGGGTGA+AGG - tig0001529:12810-12829 Msa1337880:intergenic 55.0%
TCTCTGCAGTTGTGGGCGAA+GGG - tig0001529:12888-12907 Msa1337880:intergenic 55.0%
GGATTTGAACCCATGGCCTC+TGG + tig0001529:12987-13006 Msa1337880:intron 55.0%
CGAAGGGAAAACCCCCAAAC+TGG - tig0001529:13214-13233 Msa1337880:intergenic 55.0%
CTGGTGAGAAGAGGTTTCCG+CGG + tig0001529:13981-14000 Msa1337880:CDS 55.0%
AGAAGAGGTTTCCGCGGTGT+GGG + tig0001529:13987-14006 Msa1337880:CDS 55.0%
ACTCCTTCATGCAGGTGGTG+GGG + tig0001529:14024-14043 Msa1337880:CDS 55.0%
TAACCCCACCACCTGCATGA+AGG - tig0001529:14030-14049 Msa1337880:intergenic 55.0%
GAATGTGTGGCTGCAGCAGA+AGG + tig0001529:14086-14105 Msa1337880:CDS 55.0%
! ACCGTGGCGCCAACCTTTTG+AGG + tig0001529:10436-10455 Msa1337880:five_prime_UTR 60.0%
AGGCCTGTGTTTGGTCCTGC+TGG + tig0001529:10952-10971 Msa1337880:CDS 60.0%
CTCTCTGCAGTTGTGGGCGA+AGG - tig0001529:12889-12908 Msa1337880:intergenic 60.0%
CGGGAACCTGTCGGGGATAT+CGG - tig0001529:13926-13945 Msa1337880:intergenic 60.0%
CGCGGAAACCTCTTCTCACC+AGG - tig0001529:13983-14002 Msa1337880:intergenic 60.0%
GAGAAGAGGTTTCCGCGGTG+TGG + tig0001529:13986-14005 Msa1337880:CDS 60.0%
TGTGGCTGCAGCAGAAGGGA+AGG + tig0001529:14091-14110 Msa1337880:CDS 60.0%
TTTCCGCGGTGTGGGTCCCA+CGG + tig0001529:13995-14014 Msa1337880:CDS 65.0%
GGCTGCAGCAGAAGGGAAGG+AGG + tig0001529:14094-14113 Msa1337880:CDS 65.0%
TGACCGTGGGACCCACACCG+CGG - tig0001529:14001-14020 Msa1337880:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0001529 gene 10265 14544 10265 ID=Msa1337880;Name=Msa1337880
tig0001529 mRNA 10265 14544 10265 ID=Msa1337880-mRNA-1;Parent=Msa1337880;Name=Msa1337880-mRNA-1;_AED=0.08;_eAED=0.08;_QI=630|1|1|1|1|1|5|324|375
tig0001529 exon 10265 11366 10265 ID=Msa1337880-mRNA-1:exon:1393;Parent=Msa1337880-mRNA-1
tig0001529 exon 12131 12188 12131 ID=Msa1337880-mRNA-1:exon:1394;Parent=Msa1337880-mRNA-1
tig0001529 exon 12285 12368 12285 ID=Msa1337880-mRNA-1:exon:1395;Parent=Msa1337880-mRNA-1
tig0001529 exon 12514 12655 12514 ID=Msa1337880-mRNA-1:exon:1396;Parent=Msa1337880-mRNA-1
tig0001529 exon 13849 14544 13849 ID=Msa1337880-mRNA-1:exon:1397;Parent=Msa1337880-mRNA-1
tig0001529 five_prime_UTR 10265 10894 10265 ID=Msa1337880-mRNA-1:five_prime_utr;Parent=Msa1337880-mRNA-1
tig0001529 CDS 10895 11366 10895 ID=Msa1337880-mRNA-1:cds;Parent=Msa1337880-mRNA-1
tig0001529 CDS 12131 12188 12131 ID=Msa1337880-mRNA-1:cds;Parent=Msa1337880-mRNA-1
tig0001529 CDS 12285 12368 12285 ID=Msa1337880-mRNA-1:cds;Parent=Msa1337880-mRNA-1
tig0001529 CDS 12514 12655 12514 ID=Msa1337880-mRNA-1:cds;Parent=Msa1337880-mRNA-1
tig0001529 CDS 13849 14220 13849 ID=Msa1337880-mRNA-1:cds;Parent=Msa1337880-mRNA-1
tig0001529 three_prime_UTR 14221 14544 14221 ID=Msa1337880-mRNA-1:three_prime_utr;Parent=Msa1337880-mRNA-1
Gene Sequence

>Msa1337880

ATGTCAGCTTCAGGAGGTCCTAGATTGAGGTCTATGAATGTTGCTGACTCAGAAGCAAGGCCTGTGTTTGGTCCTGCTGGAAATAAGACAGGTTCTTATAGTTCTAGAAAAGATGCTTCAAAGCCACTGAGAAAGGCTGAGAAATTGGGCAAGGAGGTTGATTTGGCCAAAGAGAAGAAAGATGCTTCTCCTCAGTCACATTCTGCCAGTGTTTCTTCAGTGTTGCGCCGACATGAGCAGTTGTTGCATTCTAATTTGTCGATGAATGCTTCGTGTTCTTCGGATGCATCCACAGACTCGTTTCATAGCCGAGCTTCTACTGGAAGATTGACTCGGTCTAATAGCTATGGTTTGACAAGGAAGCGGTCAGTGTCGAAGCCAAGAAGTGTTGTTTCTGACGGTGTGTTGGAATCTCCTCCTCCTGATGGTGCACAATCCAAGAAGAGGTGTGCTTGGATCACTCCTAATACTGAGCCATATTATGCTGCTTTCCATGATGAAGAATGGGGAGTTCCAGTACATGACGACAAGAAACTGTTTGAGGTTCTTGTTCTTTCGAGTGCTCTATCTGAACTCACTTGGCCAGCCATTCTAAGCAAGAGACACATTTTTAGGGAAGTTTTTGCTGACTTTGATCCAGTTGCTGTCTCAAAATTAAATGAGAAGAAGGTGATAACACCAGGAACCACTACAAGTTCCTTACTCTCTGATCAGAAATTGCGTGGAATAATTGAGAATGCACGCCAAATATCAAAGGTCATAGTAGAGTTTGGGTCATTCGACAATTACATTTGGAGTTTTGTGAACCACAAGCCTATACTTAGCAAATTCCGATATCCCCGACAGGTTCCCGTTAAAACACCAAAAGCTGAAGTTATTAGCAAAGACCTGGTGAGAAGAGGTTTCCGCGGTGTGGGTCCCACGGTCATATACTCCTTCATGCAGGTGGTGGGGTTAACTAATGACCACCTCATTAGTTGCTTCAGATTTCAGGAATGTGTGGCTGCAGCAGAAGGGAAGGAGGAGAATTCCATCAAGAATGAGGATGCTCAACCAAATGCATGTGATAGTGTGATGGAATCTGATCTTTCCATTGCCATTGATAATTTGAGTTTGTCCTCAGAATGA
Protein sequence

>Msa1337880

MSASGGPRLRSMNVADSEARPVFGPAGNKTGSYSSRKDASKPLRKAEKLGKEVDLAKEKKDASPQSHSASVSSVLRRHEQLLHSNLSMNASCSSDASTDSFHSRASTGRLTRSNSYGLTRKRSVSKPRSVVSDGVLESPPPDGAQSKKRCAWITPNTEPYYAAFHDEEWGVPVHDDKKLFEVLVLSSALSELTWPAILSKRHIFREVFADFDPVAVSKLNEKKVITPGTTTSSLLSDQKLRGIIENARQISKVIVEFGSFDNYIWSFVNHKPILSKFRYPRQVPVKTPKAEVISKDLVRRGFRGVGPTVIYSFMQVVGLTNDHLISCFRFQECVAAAEGKEENSIKNEDAQPNACDSVMESDLSIAIDNLSLSSE*