Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1373320 | XP_003592809.1 | 90.625 | 288 | 19 | 4 | 1 | 284 | 1 | 284 | 2.75e-158 | 452 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1373320 | sp|O80952|PGPS1_ARATH | 61.290 | 279 | 85 | 5 | 15 | 284 | 32 | 296 | 1.11e-101 | 301 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1373320 | G7IAX4 | 90.625 | 288 | 19 | 4 | 1 | 284 | 1 | 284 | 1.31e-158 | 452 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0124930 | Msa1373320 | -0.802204 | 6.268956e-49 | -8.615850e-47 |
Msa0135200 | Msa1373320 | 0.811277 | 7.588857e-51 | -8.615850e-47 |
Msa0278570 | Msa1373320 | -0.850071 | 2.152010e-60 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1373320 | MtrunA17_Chr1g0213381 | 90.625 | 288 | 19 | 4 | 1 | 284 | 1 | 284 | 2.52e-162 | 452 |
Msa1373320 | MtrunA17_Chr7g0214161 | 79.891 | 184 | 37 | 0 | 100 | 283 | 37 | 220 | 1.61e-104 | 303 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1373320 | AT2G39290.1 | 61.290 | 279 | 85 | 5 | 15 | 284 | 32 | 296 | 1.13e-102 | 301 |
Msa1373320 | AT3G55030.1 | 70.048 | 207 | 59 | 1 | 78 | 284 | 29 | 232 | 1.05e-99 | 292 |
Find 122 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGACAAATTAGGGGTTTC+TGG | 0.112582 | tig0019430:-7905 | Msa1373320:CDS |
TCTTCTTTCTCAGACAAATT+AGG | 0.144337 | tig0019430:-7914 | Msa1373320:CDS |
CTTCTTTCTCAGACAAATTA+GGG | 0.185465 | tig0019430:-7913 | Msa1373320:CDS |
GAAAGAAGGCAACTAGATTT+TGG | 0.200423 | tig0019430:-5798 | Msa1373320:three_prime_UTR |
GAAGAGGAAGAAGAAGAAAT+TGG | 0.202231 | tig0019430:+7932 | None:intergenic |
GATCTAAGAATGCACCAAAT+TGG | 0.237949 | tig0019430:+7484 | None:intergenic |
AACGTGTGCGGATAACTTTC+AGG | 0.269679 | tig0019430:+5851 | None:intergenic |
CTTCTGCAGGGCTCGCCTTA+TGG | 0.285511 | tig0019430:-6086 | Msa1373320:CDS |
ATGAACTTAAAATCCCAATT+TGG | 0.289154 | tig0019430:-7498 | Msa1373320:CDS |
AATTTGGAAGGTTCAGGTTT+AGG | 0.294883 | tig0019430:+7845 | None:intergenic |
TTGTATATATGAGGAAAATT+TGG | 0.305878 | tig0019430:-6056 | Msa1373320:CDS |
TCGGTTACTGATTGGCTTGA+TGG | 0.314356 | tig0019430:-7623 | Msa1373320:CDS |
TGGTGGTGAATGTTTCTATA+AGG | 0.336822 | tig0019430:+7980 | None:intergenic |
GTGAGCAATTTGGAAGGTTC+AGG | 0.341309 | tig0019430:+7839 | None:intergenic |
GAAGGTTCAGGTTTAGGTTC+AGG | 0.343225 | tig0019430:+7851 | None:intergenic |
TTTGTATATAGCTTTCTATA+TGG | 0.348834 | tig0019430:-7693 | Msa1373320:intron |
ATGATGGCAATGGCAGGTAT+AGG | 0.358335 | tig0019430:+7256 | None:intergenic |
CACTGTAGTTGCAATTTAAC+TGG | 0.359824 | tig0019430:+5654 | None:intergenic |
TTGCTGCCTCGGTTACTGAT+TGG | 0.370730 | tig0019430:-7631 | Msa1373320:CDS |
GCGTTGCTTTATACTTCTGC+AGG | 0.371218 | tig0019430:-6099 | Msa1373320:CDS |
GGTGGGCAGAGTGAGCAATT+TGG | 0.375572 | tig0019430:+7829 | None:intergenic |
AGGGCTCGCCTTATGGTCAT+TGG | 0.390373 | tig0019430:-6079 | Msa1373320:CDS |
ATACCTGCCATTGCCATCAT+TGG | 0.391623 | tig0019430:-7253 | Msa1373320:CDS |
ATCTAAGAATGCACCAAATT+GGG | 0.400128 | tig0019430:+7485 | None:intergenic |
CCTCTAAAAGCTTACTATCC+TGG | 0.403316 | tig0019430:+6616 | None:intergenic |
CAGGGAATGGGCAGCTTCCC+AGG | 0.403525 | tig0019430:-6634 | Msa1373320:CDS |
GGTCATTGGTTGTATATATG+AGG | 0.404412 | tig0019430:-6065 | Msa1373320:CDS |
TAGGGAGTAGCCAGGGTAGT+TGG | 0.414090 | tig0019430:+7275 | None:intergenic |
GATGGGTTTGGTCCTGGACT+TGG | 0.414128 | tig0019430:+8015 | None:intergenic |
GGTCCTGGACTTGGCGGCAG+TGG | 0.415176 | tig0019430:+8024 | None:intergenic |
GGCTGTTGCTGTAAATAACT+TGG | 0.415831 | tig0019430:-6509 | Msa1373320:CDS |
TCAGGTTTAGGTTCAGGTTG+TGG | 0.416772 | tig0019430:+7857 | None:intergenic |
AGATTACCATGTCTGCTGTC+AGG | 0.423266 | tig0019430:-6653 | Msa1373320:CDS |
AAGAGGAAGAAGAAGAAATT+GGG | 0.423557 | tig0019430:+7933 | None:intergenic |
GATTTGCTTGTCCGGTGAAT+TGG | 0.424888 | tig0019430:-8114 | Msa1373320:five_prime_UTR |
AGTCCCGGGTCGCGAGGAGG+AGG | 0.426213 | tig0019430:+6449 | None:intergenic |
TGATGGCAATGGCAGGTATA+GGG | 0.434558 | tig0019430:+7257 | None:intergenic |
CTGTAAATAACTTGGGGAAG+TGG | 0.438180 | tig0019430:-6501 | Msa1373320:CDS |
ACAGGTACCTTGTCAGCAAC+AGG | 0.446463 | tig0019430:+7462 | None:intergenic |
GCTGCCTTTGTAGTGGGGTC+TGG | 0.448252 | tig0019430:-6126 | Msa1373320:CDS |
GGTGGTGAATGTTTCTATAA+GGG | 0.450824 | tig0019430:+7981 | None:intergenic |
CTCTAAAAGCTTACTATCCT+GGG | 0.451476 | tig0019430:+6617 | None:intergenic |
AGGGAGTAGCCAGGGTAGTT+GGG | 0.452299 | tig0019430:+7276 | None:intergenic |
CCATGTCTGCTGTCAGGGAA+TGG | 0.452876 | tig0019430:-6647 | Msa1373320:CDS |
AGCGGTTGCGCTCAGTTTCA+AGG | 0.457872 | tig0019430:+8078 | None:intergenic |
CTTATTATGTACTAGACCCT+TGG | 0.460718 | tig0019430:-7314 | Msa1373320:CDS |
CAGCCACTGCCGCCAAGTCC+AGG | 0.464455 | tig0019430:-8027 | Msa1373320:CDS |
GATGAAGATGGGTTTGGTCC+TGG | 0.465842 | tig0019430:+8009 | None:intergenic |
GGAGGAGCTGCCTTTGTAGT+GGG | 0.469667 | tig0019430:-6132 | Msa1373320:CDS |
AGCAATGAAAATTGTGGTAC+TGG | 0.471953 | tig0019430:+7649 | None:intergenic |
GTGGTTACCGACGTCACAAA+AGG | 0.473157 | tig0019430:-5949 | Msa1373320:three_prime_UTR |
CTTAGATCCTGTTGCTGACA+AGG | 0.479252 | tig0019430:-7469 | Msa1373320:intron |
GCTGTTGCTGTAAATAACTT+GGG | 0.480082 | tig0019430:-6508 | Msa1373320:CDS |
CATTACCTCTCTTCCAATGA+TGG | 0.481958 | tig0019430:+7240 | None:intergenic |
CATGTCTGCTGTCAGGGAAT+GGG | 0.482501 | tig0019430:-6646 | Msa1373320:CDS |
GGGTTTGGTCCTGGACTTGG+CGG | 0.486026 | tig0019430:+8018 | None:intergenic |
TAACCACACAACAGGAGAAT+CGG | 0.488145 | tig0019430:+5965 | None:intergenic |
TAAATAGATACCTCAAGTCC+CGG | 0.490023 | tig0019430:+6434 | None:intergenic |
TATATAGCTTTCTATATGGA+TGG | 0.490246 | tig0019430:-7689 | Msa1373320:intron |
ACTTTCAGGAATAGTAGAAA+TGG | 0.492678 | tig0019430:+5865 | None:intergenic |
CTGCCCACCATTCTCACACT+TGG | 0.496973 | tig0019430:-7815 | Msa1373320:CDS |
GATAGAGATGAAGATGGGTT+TGG | 0.498739 | tig0019430:+8003 | None:intergenic |
GACGTCGGTAACCACACAAC+AGG | 0.507865 | tig0019430:+5957 | None:intergenic |
TGGAGGAGCTGCCTTTGTAG+TGG | 0.508908 | tig0019430:-6133 | Msa1373320:CDS |
TCCTCGCGACCCGGGACTTG+AGG | 0.512133 | tig0019430:-6444 | Msa1373320:intron |
GCTTATGGTTGCCGCCACAT+TGG | 0.512365 | tig0019430:-7338 | Msa1373320:CDS |
GATTACCATGTCTGCTGTCA+GGG | 0.518665 | tig0019430:-6652 | Msa1373320:CDS |
GGCAGGTATAGGGAGTAGCC+AGG | 0.520558 | tig0019430:+7267 | None:intergenic |
GACTTACTAGCAACAAGAAG+GGG | 0.521194 | tig0019430:+7776 | None:intergenic |
ATATACAACCAATGACCATA+AGG | 0.522448 | tig0019430:+6071 | None:intergenic |
GTATCTTTGCCCAACTACCC+TGG | 0.523614 | tig0019430:-7285 | Msa1373320:CDS |
GACACGACCAAGTGTGAGAA+TGG | 0.529892 | tig0019430:+7808 | None:intergenic |
AAAATAGTGATTTGCTTGTC+CGG | 0.532097 | tig0019430:-8122 | Msa1373320:five_prime_UTR |
ACAGATAGAAGAAGAAGAAG+CGG | 0.536223 | tig0019430:+8060 | None:intergenic |
CTTCCAATGATGGCAATGGC+AGG | 0.538644 | tig0019430:+7250 | None:intergenic |
GACATCATCAACCAATTCAC+CGG | 0.541296 | tig0019430:+8103 | None:intergenic |
TTCTATATGGATGGTTGGCG+TGG | 0.541796 | tig0019430:-7680 | Msa1373320:CDS |
TAGCTTTCTATATGGATGGT+TGG | 0.541898 | tig0019430:-7685 | Msa1373320:CDS |
CCATTCCCTGACAGCAGACA+TGG | 0.547207 | tig0019430:+6647 | None:intergenic |
CGTTGCTTTATACTTCTGCA+GGG | 0.549588 | tig0019430:-6098 | Msa1373320:CDS |
ATAATAACATACCAGAAGAA+AGG | 0.551084 | tig0019430:+5701 | None:intergenic |
GGTTTAGGTTCAGGTTGTGG+TGG | 0.555201 | tig0019430:+7860 | None:intergenic |
CTCTCTTCCAATGATGGCAA+TGG | 0.555438 | tig0019430:+7246 | None:intergenic |
TTGTGACGCGTCCATGTTGG+TGG | 0.559472 | tig0019430:+7963 | None:intergenic |
CGACCAAGTGTGAGAATGGT+GGG | 0.560193 | tig0019430:+7812 | None:intergenic |
ATAAGGGATAGAGATGAAGA+TGG | 0.560789 | tig0019430:+7997 | None:intergenic |
AAGACTTACTAGCAACAAGA+AGG | 0.569579 | tig0019430:+7774 | None:intergenic |
GGATATATATGTGAAATACA+TGG | 0.569622 | tig0019430:+6002 | None:intergenic |
GGCAAAGATACCAACATCCA+AGG | 0.570230 | tig0019430:+7297 | None:intergenic |
TGTACTAGACCCTTGGATGT+TGG | 0.572861 | tig0019430:-7307 | Msa1373320:CDS |
TGGTTACCGACGTCACAAAA+GGG | 0.573280 | tig0019430:-5948 | Msa1373320:three_prime_UTR |
TAAGGGATAGAGATGAAGAT+GGG | 0.578208 | tig0019430:+7998 | None:intergenic |
GGTGAATTGGTTGATGATGT+CGG | 0.579366 | tig0019430:-8101 | Msa1373320:exon |
ACTTGGCGGCAGTGGCTGAA+CGG | 0.582509 | tig0019430:+8032 | None:intergenic |
TGATGGCTATATTGCTCGCA+AGG | 0.583037 | tig0019430:-7606 | Msa1373320:intron |
GAGGAGCTGCCTTTGTAGTG+GGG | 0.587924 | tig0019430:-6131 | Msa1373320:CDS |
AGACTTACTAGCAACAAGAA+GGG | 0.595087 | tig0019430:+7775 | None:intergenic |
CATTGCCATCATTGGAAGAG+AGG | 0.598467 | tig0019430:-7245 | Msa1373320:intron |
CACAAAAGGGAGCTGCATAG+TGG | 0.600747 | tig0019430:-5935 | Msa1373320:three_prime_UTR |
AAATAGATACCTCAAGTCCC+GGG | 0.611811 | tig0019430:+6435 | None:intergenic |
GCTCCGATTCTCCTGTTGTG+TGG | 0.612904 | tig0019430:-5968 | Msa1373320:three_prime_UTR |
TTCTTTCTCAGACAAATTAG+GGG | 0.614292 | tig0019430:-7912 | Msa1373320:CDS |
ATATATGAGGAAAATTTGGA+AGG | 0.614928 | tig0019430:-6052 | Msa1373320:CDS |
CGAGGCAGCAATGAAAATTG+TGG | 0.615674 | tig0019430:+7643 | None:intergenic |
AACACCAGACCCCACTACAA+AGG | 0.616087 | tig0019430:+6122 | None:intergenic |
ACGACCAAGTGTGAGAATGG+TGG | 0.617760 | tig0019430:+7811 | None:intergenic |
GCAGGTATAGGGAGTAGCCA+GGG | 0.619917 | tig0019430:+7268 | None:intergenic |
TAATTTGTCTGAGAAAGAAG+AGG | 0.626633 | tig0019430:+7916 | None:intergenic |
AGAAACATTCACCACCAACA+TGG | 0.632356 | tig0019430:-7974 | Msa1373320:CDS |
GGCAGAGTGAGCAATTTGGA+AGG | 0.632472 | tig0019430:+7833 | None:intergenic |
AAATTTGGAAGGTGTTGTTG+AGG | 0.632998 | tig0019430:-6041 | Msa1373320:CDS |
TAGTTGTGACGCGTCCATGT+TGG | 0.635478 | tig0019430:+7960 | None:intergenic |
TTTATTACTTACAGTGACTG+GGG | 0.636818 | tig0019430:+5823 | None:intergenic |
CTGTTGCTGTAAATAACTTG+GGG | 0.642896 | tig0019430:-6507 | Msa1373320:CDS |
ACTTACTAGCAACAAGAAGG+GGG | 0.658643 | tig0019430:+7777 | None:intergenic |
AGGTAACTGAAAAGTAAACA+AGG | 0.658868 | tig0019430:+5721 | None:intergenic |
GCAAAGATACCAACATCCAA+GGG | 0.664746 | tig0019430:+7298 | None:intergenic |
ACATAATAAGACCAATGTGG+CGG | 0.672036 | tig0019430:+7327 | None:intergenic |
ATCAAGCCAATCAGTAACCG+AGG | 0.672140 | tig0019430:+7625 | None:intergenic |
GGCTAACGCAGTCATCTGTG+TGG | 0.691702 | tig0019430:+6471 | None:intergenic |
AATGAAAATTGTGGTACTGG+CGG | 0.723059 | tig0019430:+7652 | None:intergenic |
AGTACATAATAAGACCAATG+TGG | 0.733330 | tig0019430:+7324 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACAAGAAAAAAATAAAAATA+AGG | + | tig0019430:7159-7178 | None:intergenic | 10.0% |
!!! | ATTTATTTTTTTTCCATTGA+CGG | - | tig0019430:5662-5681 | Msa1373320:three_prime_UTR | 15.0% |
!!! | CATATATATCCAATTTTTTT+TGG | - | tig0019430:7854-7873 | Msa1373320:CDS | 15.0% |
!! | AATGAATGTGAAATTGTAAT+TGG | + | tig0019430:6122-6141 | None:intergenic | 20.0% |
!! | TTTGTATATAGCTTTCTATA+TGG | - | tig0019430:6151-6170 | Msa1373320:intron | 20.0% |
!! | CAAATATCAAACATAGTAAT+AGG | + | tig0019430:6311-6330 | None:intergenic | 20.0% |
!! | ATTGTATTGTAATATGCAAT+AGG | + | tig0019430:6419-6438 | None:intergenic | 20.0% |
!! | ATAAGTTATAAGTAAAGCAT+GGG | + | tig0019430:6650-6669 | None:intergenic | 20.0% |
!! | AATAAGTTATAAGTAAAGCA+TGG | + | tig0019430:6651-6670 | None:intergenic | 20.0% |
!! | TAAAAATAAGGAATCTGATT+TGG | + | tig0019430:7147-7166 | None:intergenic | 20.0% |
!! | ATAATGAAACTTGGTATAAT+AGG | - | tig0019430:7314-7333 | Msa1373320:CDS | 20.0% |
!!! | TCTATTTACTTTGTATTTTG+AGG | - | tig0019430:7425-7444 | Msa1373320:intron | 20.0% |
!!! | TATAGAAAAATAACTCCTTT+TGG | - | tig0019430:7565-7584 | Msa1373320:intron | 20.0% |
!! | TTGTATATATGAGGAAAATT+TGG | - | tig0019430:7788-7807 | Msa1373320:CDS | 20.0% |
!! | GTAAGTAATAAAAAGAAAGA+AGG | - | tig0019430:8032-8051 | Msa1373320:CDS | 20.0% |
! | AAATTGTAATTGGCATATGA+TGG | + | tig0019430:6112-6131 | None:intergenic | 25.0% |
! | TATATAGCTTTCTATATGGA+TGG | - | tig0019430:6155-6174 | Msa1373320:intron | 25.0% |
! | ACATAGTAATAGGAAAAGTA+GGG | + | tig0019430:6301-6320 | None:intergenic | 25.0% |
! | AACATAGTAATAGGAAAAGT+AGG | + | tig0019430:6302-6321 | None:intergenic | 25.0% |
! | ATGAACTTAAAATCCCAATT+TGG | - | tig0019430:6346-6365 | Msa1373320:intron | 25.0% |
! | TTGTAATATGCAATAGGAAT+AGG | + | tig0019430:6413-6432 | None:intergenic | 25.0% |
!!! | TATTTAACTTGCCTTTACTT+TGG | + | tig0019430:6771-6790 | None:intergenic | 25.0% |
! | ATTGCTTGATAAACAAACAT+TGG | + | tig0019430:6848-6867 | None:intergenic | 25.0% |
! | TCAAAAGCTTCATTGTTTAA+TGG | - | tig0019430:7017-7036 | Msa1373320:intron | 25.0% |
! | GACTGAAATCCATATTTATA+TGG | - | tig0019430:7039-7058 | Msa1373320:intron | 25.0% |
! | GGCTAATTACCATATAAATA+TGG | + | tig0019430:7051-7070 | None:intergenic | 25.0% |
!! | CATATTTTCTTCTGATTTAC+TGG | - | tig0019430:7107-7126 | Msa1373320:intron | 25.0% |
!!! | AATAATTTGCTCTAAACTTC+AGG | - | tig0019430:7519-7538 | Msa1373320:intron | 25.0% |
! | CTTATAAACTCAAATCCAAA+AGG | + | tig0019430:7583-7602 | None:intergenic | 25.0% |
!! | TGCTTAAAACACAATTTTCA+GGG | + | tig0019430:7641-7660 | None:intergenic | 25.0% |
! | ATATATGAGGAAAATTTGGA+AGG | - | tig0019430:7792-7811 | Msa1373320:CDS | 25.0% |
! | GGATATATATGTGAAATACA+TGG | + | tig0019430:7845-7864 | None:intergenic | 25.0% |
!! | TTTTATTACTTACAGTGACT+GGG | + | tig0019430:8025-8044 | None:intergenic | 25.0% |
!! | TTTTTATTACTTACAGTGAC+TGG | + | tig0019430:8026-8045 | None:intergenic | 25.0% |
! | ATAATAACATACCAGAAGAA+AGG | + | tig0019430:8146-8165 | None:intergenic | 25.0% |
!! | AAAATAGTGATTTGCTTGTC+CGG | - | tig0019430:5722-5741 | Msa1373320:three_prime_UTR | 30.0% |
AAGAGGAAGAAGAAGAAATT+GGG | + | tig0019430:5914-5933 | None:intergenic | 30.0% | |
! | TAATTTGTCTGAGAAAGAAG+AGG | + | tig0019430:5931-5950 | None:intergenic | 30.0% |
TCTTCTTTCTCAGACAAATT+AGG | - | tig0019430:5930-5949 | Msa1373320:three_prime_UTR | 30.0% | |
CTTCTTTCTCAGACAAATTA+GGG | - | tig0019430:5931-5950 | Msa1373320:three_prime_UTR | 30.0% | |
TTCTTTCTCAGACAAATTAG+GGG | - | tig0019430:5932-5951 | Msa1373320:three_prime_UTR | 30.0% | |
ATCTAAGAATGCACCAAATT+GGG | + | tig0019430:6362-6381 | None:intergenic | 30.0% | |
AATATGCAATAGGAATAGGT+AGG | + | tig0019430:6409-6428 | None:intergenic | 30.0% | |
AGTACATAATAAGACCAATG+TGG | + | tig0019430:6523-6542 | None:intergenic | 30.0% | |
!!! | TGTTTTAATCTAGAATGCTC+TGG | - | tig0019430:6879-6898 | Msa1373320:intron | 30.0% |
AATTAAGCCAGACAATTTGT+TGG | - | tig0019430:6923-6942 | Msa1373320:intron | 30.0% | |
GCAAAGCAAAATACAATTAC+AGG | + | tig0019430:6964-6983 | None:intergenic | 30.0% | |
! | AATTGTATTTTGCTTTGCCA+TGG | - | tig0019430:6966-6985 | Msa1373320:intron | 30.0% |
TTAACTATGCATAATGACCA+TGG | + | tig0019430:6986-7005 | None:intergenic | 30.0% | |
! | TATGATGTCTCAAAAGCATA+AGG | + | tig0019430:7091-7110 | None:intergenic | 30.0% |
TGAGCTTGTATAATGAAACT+TGG | - | tig0019430:7305-7324 | Msa1373320:CDS | 30.0% | |
! | GCTTAAAACACAATTTTCAG+GGG | + | tig0019430:7640-7659 | None:intergenic | 30.0% |
! | GTGCTTAAAACACAATTTTC+AGG | + | tig0019430:7642-7661 | None:intergenic | 30.0% |
ATATACAACCAATGACCATA+AGG | + | tig0019430:7776-7795 | None:intergenic | 30.0% | |
ACTTTCAGGAATAGTAGAAA+TGG | + | tig0019430:7982-8001 | None:intergenic | 30.0% | |
TTTATTACTTACAGTGACTG+GGG | + | tig0019430:8024-8043 | None:intergenic | 30.0% | |
! | TTCGTGTTTCGAATTTTCTA+TGG | + | tig0019430:8091-8110 | None:intergenic | 30.0% |
AGGTAACTGAAAAGTAAACA+AGG | + | tig0019430:8126-8145 | None:intergenic | 30.0% | |
!!! | TTCACTTTTTTCTCCGTCAA+TGG | + | tig0019430:5678-5697 | None:intergenic | 35.0% |
ACAGATAGAAGAAGAAGAAG+CGG | + | tig0019430:5787-5806 | None:intergenic | 35.0% | |
TAAGGGATAGAGATGAAGAT+GGG | + | tig0019430:5849-5868 | None:intergenic | 35.0% | |
ATAAGGGATAGAGATGAAGA+TGG | + | tig0019430:5850-5869 | None:intergenic | 35.0% | |
! | GGTGGTGAATGTTTCTATAA+GGG | + | tig0019430:5866-5885 | None:intergenic | 35.0% |
! | TGGTGGTGAATGTTTCTATA+AGG | + | tig0019430:5867-5886 | None:intergenic | 35.0% |
GAAGAGGAAGAAGAAGAAAT+TGG | + | tig0019430:5915-5934 | None:intergenic | 35.0% | |
! | AATTTGGAAGGTTCAGGTTT+AGG | + | tig0019430:6002-6021 | None:intergenic | 35.0% |
AGACTTACTAGCAACAAGAA+GGG | + | tig0019430:6072-6091 | None:intergenic | 35.0% | |
AAGACTTACTAGCAACAAGA+AGG | + | tig0019430:6073-6092 | None:intergenic | 35.0% | |
! | TGTAATTGGCATATGATGGA+TGG | + | tig0019430:6108-6127 | None:intergenic | 35.0% |
TAGCTTTCTATATGGATGGT+TGG | - | tig0019430:6159-6178 | Msa1373320:intron | 35.0% | |
! | AATGAAAATTGTGGTACTGG+CGG | + | tig0019430:6195-6214 | None:intergenic | 35.0% |
AGCAATGAAAATTGTGGTAC+TGG | + | tig0019430:6198-6217 | None:intergenic | 35.0% | |
! | AAAGTAGGGTTAGTAAGTGT+GGG | + | tig0019430:6287-6306 | None:intergenic | 35.0% |
! | AAAAGTAGGGTTAGTAAGTG+TGG | + | tig0019430:6288-6307 | None:intergenic | 35.0% |
GATCTAAGAATGCACCAAAT+TGG | + | tig0019430:6363-6382 | None:intergenic | 35.0% | |
ACATAATAAGACCAATGTGG+CGG | + | tig0019430:6520-6539 | None:intergenic | 35.0% | |
CTTATTATGTACTAGACCCT+TGG | - | tig0019430:6530-6549 | Msa1373320:intron | 35.0% | |
AATGAACTGAGCCAAAGTAA+AGG | - | tig0019430:6757-6776 | Msa1373320:intron | 35.0% | |
! | TAATCAGTTTTCCTGTGTGT+TGG | - | tig0019430:6789-6808 | Msa1373320:intron | 35.0% |
GAATTCATATTTCCCTTGTC+TGG | - | tig0019430:6818-6837 | Msa1373320:intron | 35.0% | |
AAGGAAAATACACGAGAGTA+TGG | + | tig0019430:7072-7091 | None:intergenic | 35.0% | |
! | CTCTAAAAGCTTACTATCCT+GGG | + | tig0019430:7230-7249 | None:intergenic | 35.0% |
! | TAGTTGATTCAAGTGTACAG+GGG | + | tig0019430:7264-7283 | None:intergenic | 35.0% |
! | CTAGTTGATTCAAGTGTACA+GGG | + | tig0019430:7265-7284 | None:intergenic | 35.0% |
GCTGTTGCTGTAAATAACTT+GGG | - | tig0019430:7336-7355 | Msa1373320:CDS | 35.0% | |
CTGTTGCTGTAAATAACTTG+GGG | - | tig0019430:7337-7356 | Msa1373320:CDS | 35.0% | |
TAAATAGATACCTCAAGTCC+CGG | + | tig0019430:7413-7432 | None:intergenic | 35.0% | |
!! | TTCCCATTTTTCTTCAGTCA+TGG | - | tig0019430:7691-7710 | Msa1373320:intron | 35.0% |
CTCCATGACTGAAGAAAAAT+GGG | + | tig0019430:7696-7715 | None:intergenic | 35.0% | |
! | GGTCATTGGTTGTATATATG+AGG | - | tig0019430:7779-7798 | Msa1373320:intron | 35.0% |
!! | AAATTTGGAAGGTGTTGTTG+AGG | - | tig0019430:7803-7822 | Msa1373320:CDS | 35.0% |
GAATCGGAGCCAAAAAAAAT+TGG | + | tig0019430:7866-7885 | None:intergenic | 35.0% | |
! | GAAAGAAGGCAACTAGATTT+TGG | - | tig0019430:8046-8065 | Msa1373320:CDS | 35.0% |
!!! | CAACTAGATTTTGGAGTCAT+CGG | - | tig0019430:8055-8074 | Msa1373320:CDS | 35.0% |
! | GTGTTTCGAATTTTCTATGG+TGG | + | tig0019430:8088-8107 | None:intergenic | 35.0% |
! | CTTTTCAGTTACCTTTCTTC+TGG | - | tig0019430:8132-8151 | Msa1373320:five_prime_UTR | 35.0% |
CACTGTAGTTGCAATTTAAC+TGG | + | tig0019430:8193-8212 | None:intergenic | 35.0% | |
GACATCATCAACCAATTCAC+CGG | + | tig0019430:5744-5763 | None:intergenic | 40.0% | |
!! | GGTGAATTGGTTGATGATGT+CGG | - | tig0019430:5743-5762 | Msa1373320:three_prime_UTR | 40.0% |
! | GATAGAGATGAAGATGGGTT+TGG | + | tig0019430:5844-5863 | None:intergenic | 40.0% |
AGAAACATTCACCACCAACA+TGG | - | tig0019430:5870-5889 | Msa1373320:three_prime_UTR | 40.0% | |
TCAGACAAATTAGGGGTTTC+TGG | - | tig0019430:5939-5958 | Msa1373320:three_prime_UTR | 40.0% | |
ACTTACTAGCAACAAGAAGG+GGG | + | tig0019430:6070-6089 | None:intergenic | 40.0% | |
GACTTACTAGCAACAAGAAG+GGG | + | tig0019430:6071-6090 | None:intergenic | 40.0% | |
!! | ATTGGCATATGATGGATGGA+AGG | + | tig0019430:6104-6123 | None:intergenic | 40.0% |
! | CACAATTTTCATTGCTGCCT+CGG | - | tig0019430:6202-6221 | Msa1373320:intron | 40.0% |
CAATAGGAATAGGTAGGTAC+AGG | + | tig0019430:6403-6422 | None:intergenic | 40.0% | |
CTTCTACTCATTGCAGCTTA+TGG | - | tig0019430:6491-6510 | Msa1373320:CDS | 40.0% | |
GCAAAGATACCAACATCCAA+GGG | + | tig0019430:6549-6568 | None:intergenic | 40.0% | |
CATTACCTCTCTTCCAATGA+TGG | + | tig0019430:6607-6626 | None:intergenic | 40.0% | |
TCTTCATGTATCACCACTTG+TGG | - | tig0019430:6710-6729 | Msa1373320:intron | 40.0% | |
CTTCATGTATCACCACTTGT+GGG | - | tig0019430:6711-6730 | Msa1373320:intron | 40.0% | |
! | AGTTTTCCTGTGTGTTGGAT+TGG | - | tig0019430:6794-6813 | Msa1373320:intron | 40.0% |
AATTCTCCAATCCAACACAC+AGG | + | tig0019430:6803-6822 | None:intergenic | 40.0% | |
AACATTGGAGATCCAGACAA+GGG | + | tig0019430:6833-6852 | None:intergenic | 40.0% | |
AAACATTGGAGATCCAGACA+AGG | + | tig0019430:6834-6853 | None:intergenic | 40.0% | |
CGATATGCCAACAAATTGTC+TGG | + | tig0019430:6933-6952 | None:intergenic | 40.0% | |
AGCAGACATGGTAATCTACT+TGG | + | tig0019430:7188-7207 | None:intergenic | 40.0% | |
! | CCTCTAAAAGCTTACTATCC+TGG | + | tig0019430:7231-7250 | None:intergenic | 40.0% |
! | CCAGGATAGTAAGCTTTTAG+AGG | - | tig0019430:7228-7247 | Msa1373320:intron | 40.0% |
! | GCTAGTTGATTCAAGTGTAC+AGG | + | tig0019430:7266-7285 | None:intergenic | 40.0% |
GTACACTTGAATCAACTAGC+TGG | - | tig0019430:7266-7285 | Msa1373320:CDS | 40.0% | |
GGCTGTTGCTGTAAATAACT+TGG | - | tig0019430:7335-7354 | Msa1373320:CDS | 40.0% | |
CTGTAAATAACTTGGGGAAG+TGG | - | tig0019430:7343-7362 | Msa1373320:intron | 40.0% | |
AAATAGATACCTCAAGTCCC+GGG | + | tig0019430:7412-7431 | None:intergenic | 40.0% | |
CCTCCATGACTGAAGAAAAA+TGG | + | tig0019430:7697-7716 | None:intergenic | 40.0% | |
!! | CCATTTTTCTTCAGTCATGG+AGG | - | tig0019430:7694-7713 | Msa1373320:intron | 40.0% |
! | CGTTGCTTTATACTTCTGCA+GGG | - | tig0019430:7746-7765 | Msa1373320:intron | 40.0% |
TAACCACACAACAGGAGAAT+CGG | + | tig0019430:7882-7901 | None:intergenic | 40.0% | |
! | GATTTGCTTGTCCGGTGAAT+TGG | - | tig0019430:5730-5749 | Msa1373320:three_prime_UTR | 45.0% |
!! | TCAGGTTTAGGTTCAGGTTG+TGG | + | tig0019430:5990-6009 | None:intergenic | 45.0% |
! | GAAGGTTCAGGTTTAGGTTC+AGG | + | tig0019430:5996-6015 | None:intergenic | 45.0% |
GTGAGCAATTTGGAAGGTTC+AGG | + | tig0019430:6008-6027 | None:intergenic | 45.0% | |
TTCTATATGGATGGTTGGCG+TGG | - | tig0019430:6164-6183 | Msa1373320:intron | 45.0% | |
CGAGGCAGCAATGAAAATTG+TGG | + | tig0019430:6204-6223 | None:intergenic | 45.0% | |
ATCAAGCCAATCAGTAACCG+AGG | + | tig0019430:6222-6241 | None:intergenic | 45.0% | |
!! | TCGGTTACTGATTGGCTTGA+TGG | - | tig0019430:6221-6240 | Msa1373320:intron | 45.0% |
TGATGGCTATATTGCTCGCA+AGG | - | tig0019430:6238-6257 | Msa1373320:intron | 45.0% | |
CTTAGATCCTGTTGCTGACA+AGG | - | tig0019430:6375-6394 | Msa1373320:intron | 45.0% | |
TGTACTAGACCCTTGGATGT+TGG | - | tig0019430:6537-6556 | Msa1373320:intron | 45.0% | |
GGCAAAGATACCAACATCCA+AGG | + | tig0019430:6550-6569 | None:intergenic | 45.0% | |
TGATGGCAATGGCAGGTATA+GGG | + | tig0019430:6590-6609 | None:intergenic | 45.0% | |
ATGATGGCAATGGCAGGTAT+AGG | + | tig0019430:6591-6610 | None:intergenic | 45.0% | |
ATACCTGCCATTGCCATCAT+TGG | - | tig0019430:6591-6610 | Msa1373320:intron | 45.0% | |
CTCTCTTCCAATGATGGCAA+TGG | + | tig0019430:6601-6620 | None:intergenic | 45.0% | |
CATTGCCATCATTGGAAGAG+AGG | - | tig0019430:6599-6618 | Msa1373320:intron | 45.0% | |
AAGAAGCAACCTCACATGGT+TGG | + | tig0019430:6694-6713 | None:intergenic | 45.0% | |
CATGAAGAAGCAACCTCACA+TGG | + | tig0019430:6698-6717 | None:intergenic | 45.0% | |
GTATCACCACTTGTGGGATA+AGG | - | tig0019430:6717-6736 | Msa1373320:intron | 45.0% | |
AGATTACCATGTCTGCTGTC+AGG | - | tig0019430:7191-7210 | Msa1373320:intron | 45.0% | |
GATTACCATGTCTGCTGTCA+GGG | - | tig0019430:7192-7211 | Msa1373320:intron | 45.0% | |
! | AAGCACTGTCATTGACTGAG+AGG | - | tig0019430:7656-7675 | Msa1373320:CDS | 45.0% |
! | GCGTTGCTTTATACTTCTGC+AGG | - | tig0019430:7745-7764 | Msa1373320:intron | 45.0% |
TGGTTACCGACGTCACAAAA+GGG | - | tig0019430:7896-7915 | Msa1373320:CDS | 45.0% | |
AACGTGTGCGGATAACTTTC+AGG | + | tig0019430:7996-8015 | None:intergenic | 45.0% | |
! | GATGAAGATGGGTTTGGTCC+TGG | + | tig0019430:5838-5857 | None:intergenic | 50.0% |
TAGTTGTGACGCGTCCATGT+TGG | + | tig0019430:5887-5906 | None:intergenic | 50.0% | |
!! | GGTTTAGGTTCAGGTTGTGG+TGG | + | tig0019430:5987-6006 | None:intergenic | 50.0% |
GGCAGAGTGAGCAATTTGGA+AGG | + | tig0019430:6014-6033 | None:intergenic | 50.0% | |
CGACCAAGTGTGAGAATGGT+GGG | + | tig0019430:6035-6054 | None:intergenic | 50.0% | |
ACGACCAAGTGTGAGAATGG+TGG | + | tig0019430:6036-6055 | None:intergenic | 50.0% | |
GACACGACCAAGTGTGAGAA+TGG | + | tig0019430:6039-6058 | None:intergenic | 50.0% | |
TTGCTGCCTCGGTTACTGAT+TGG | - | tig0019430:6213-6232 | Msa1373320:intron | 50.0% | |
ACAGGTACCTTGTCAGCAAC+AGG | + | tig0019430:6385-6404 | None:intergenic | 50.0% | |
GTATCTTTGCCCAACTACCC+TGG | - | tig0019430:6559-6578 | Msa1373320:intron | 50.0% | |
CTTCCAATGATGGCAATGGC+AGG | + | tig0019430:6597-6616 | None:intergenic | 50.0% | |
ACATCAACGCCAACCATGTG+AGG | - | tig0019430:6682-6701 | Msa1373320:intron | 50.0% | |
ACCACTTGTGGGATAAGGCT+TGG | - | tig0019430:6722-6741 | Msa1373320:intron | 50.0% | |
! | ACCAAGCCTTATCCCACAAG+TGG | + | tig0019430:6726-6745 | None:intergenic | 50.0% |
! | GTGGGATAAGGCTTGGTTGT+TGG | - | tig0019430:6729-6748 | Msa1373320:intron | 50.0% |
CATGTCTGCTGTCAGGGAAT+GGG | - | tig0019430:7198-7217 | Msa1373320:intron | 50.0% | |
AACACCAGACCCCACTACAA+AGG | + | tig0019430:7725-7744 | None:intergenic | 50.0% | |
GTGGTTACCGACGTCACAAA+AGG | - | tig0019430:7895-7914 | Msa1373320:CDS | 50.0% | |
CACAAAAGGGAGCTGCATAG+TGG | - | tig0019430:7909-7928 | Msa1373320:CDS | 50.0% | |
ACTGGGGACAAAAACGTGTG+CGG | + | tig0019430:8008-8027 | None:intergenic | 50.0% | |
AGCGGTTGCGCTCAGTTTCA+AGG | + | tig0019430:5769-5788 | None:intergenic | 55.0% | |
! | GATGGGTTTGGTCCTGGACT+TGG | + | tig0019430:5832-5851 | None:intergenic | 55.0% |
TTGTGACGCGTCCATGTTGG+TGG | + | tig0019430:5884-5903 | None:intergenic | 55.0% | |
GGTGGGCAGAGTGAGCAATT+TGG | + | tig0019430:6018-6037 | None:intergenic | 55.0% | |
CTGCCCACCATTCTCACACT+TGG | - | tig0019430:6029-6048 | Msa1373320:exon | 55.0% | |
AGCAACAAGAAGGGGGACTG+CGG | + | tig0019430:6063-6082 | None:intergenic | 55.0% | |
GCTTATGGTTGCCGCCACAT+TGG | - | tig0019430:6506-6525 | Msa1373320:CDS | 55.0% | |
AGGGAGTAGCCAGGGTAGTT+GGG | + | tig0019430:6571-6590 | None:intergenic | 55.0% | |
TAGGGAGTAGCCAGGGTAGT+TGG | + | tig0019430:6572-6591 | None:intergenic | 55.0% | |
GCAGGTATAGGGAGTAGCCA+GGG | + | tig0019430:6579-6598 | None:intergenic | 55.0% | |
CCATTCCCTGACAGCAGACA+TGG | + | tig0019430:7200-7219 | None:intergenic | 55.0% | |
CCATGTCTGCTGTCAGGGAA+TGG | - | tig0019430:7197-7216 | Msa1373320:intron | 55.0% | |
GGCTAACGCAGTCATCTGTG+TGG | + | tig0019430:7376-7395 | None:intergenic | 55.0% | |
TGGAGGAGCTGCCTTTGTAG+TGG | - | tig0019430:7711-7730 | Msa1373320:intron | 55.0% | |
GGAGGAGCTGCCTTTGTAGT+GGG | - | tig0019430:7712-7731 | Msa1373320:intron | 55.0% | |
GAGGAGCTGCCTTTGTAGTG+GGG | - | tig0019430:7713-7732 | Msa1373320:intron | 55.0% | |
AGGGCTCGCCTTATGGTCAT+TGG | - | tig0019430:7765-7784 | Msa1373320:intron | 55.0% | |
GCTCCGATTCTCCTGTTGTG+TGG | - | tig0019430:7876-7895 | Msa1373320:CDS | 55.0% | |
GACGTCGGTAACCACACAAC+AGG | + | tig0019430:7890-7909 | None:intergenic | 55.0% | |
! | GCAGCTCCCTTTTGTGACGT+CGG | + | tig0019430:7905-7924 | None:intergenic | 55.0% |
ACTTGGCGGCAGTGGCTGAA+CGG | + | tig0019430:5815-5834 | None:intergenic | 60.0% | |
! | GGGTTTGGTCCTGGACTTGG+CGG | + | tig0019430:5829-5848 | None:intergenic | 60.0% |
GGCAGGTATAGGGAGTAGCC+AGG | + | tig0019430:6580-6599 | None:intergenic | 60.0% | |
! | GCTGCCTTTGTAGTGGGGTC+TGG | - | tig0019430:7718-7737 | Msa1373320:intron | 60.0% |
CTTCTGCAGGGCTCGCCTTA+TGG | - | tig0019430:7758-7777 | Msa1373320:intron | 60.0% | |
CAGGGAATGGGCAGCTTCCC+AGG | - | tig0019430:7210-7229 | Msa1373320:intron | 65.0% | |
CAGCCACTGCCGCCAAGTCC+AGG | - | tig0019430:5817-5836 | Msa1373320:three_prime_UTR | 70.0% | |
GGTCCTGGACTTGGCGGCAG+TGG | + | tig0019430:5823-5842 | None:intergenic | 70.0% | |
TAGCCCTCCTCCTCGCGACC+CGG | - | tig0019430:7391-7410 | Msa1373320:intron | 70.0% | |
TCAAGTCCCGGGTCGCGAGG+AGG | + | tig0019430:7401-7420 | None:intergenic | 70.0% | |
TCCTCGCGACCCGGGACTTG+AGG | - | tig0019430:7400-7419 | Msa1373320:intron | 70.0% | |
ACCTCAAGTCCCGGGTCGCG+AGG | + | tig0019430:7404-7423 | None:intergenic | 70.0% | |
AGCCCTCCTCCTCGCGACCC+GGG | - | tig0019430:7392-7411 | Msa1373320:intron | 75.0% | |
GTCCCGGGTCGCGAGGAGGA+GGG | + | tig0019430:7397-7416 | None:intergenic | 75.0% | |
AGTCCCGGGTCGCGAGGAGG+AGG | + | tig0019430:7398-7417 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0019430 | gene | 5651 | 8215 | 5651 | ID=Msa1373320;Name=Msa1373320 |
tig0019430 | mRNA | 5651 | 8215 | 5651 | ID=Msa1373320-mRNA-1;Parent=Msa1373320;Name=Msa1373320-mRNA-1;_AED=0.11;_eAED=0.11;_QI=105|1|1|1|1|1|7|387|284 |
tig0019430 | exon | 5651 | 6158 | 5651 | ID=Msa1373320-mRNA-1:exon:3355;Parent=Msa1373320-mRNA-1 |
tig0019430 | exon | 6445 | 6530 | 6445 | ID=Msa1373320-mRNA-1:exon:3354;Parent=Msa1373320-mRNA-1 |
tig0019430 | exon | 6617 | 6673 | 6617 | ID=Msa1373320-mRNA-1:exon:3353;Parent=Msa1373320-mRNA-1 |
tig0019430 | exon | 7246 | 7359 | 7246 | ID=Msa1373320-mRNA-1:exon:3352;Parent=Msa1373320-mRNA-1 |
tig0019430 | exon | 7470 | 7520 | 7470 | ID=Msa1373320-mRNA-1:exon:3351;Parent=Msa1373320-mRNA-1 |
tig0019430 | exon | 7607 | 7704 | 7607 | ID=Msa1373320-mRNA-1:exon:3350;Parent=Msa1373320-mRNA-1 |
tig0019430 | exon | 7783 | 8215 | 7783 | ID=Msa1373320-mRNA-1:exon:3349;Parent=Msa1373320-mRNA-1 |
tig0019430 | five_prime_UTR | 8111 | 8215 | 8111 | ID=Msa1373320-mRNA-1:five_prime_utr;Parent=Msa1373320-mRNA-1 |
tig0019430 | CDS | 7783 | 8110 | 7783 | ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1 |
tig0019430 | CDS | 7607 | 7704 | 7607 | ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1 |
tig0019430 | CDS | 7470 | 7520 | 7470 | ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1 |
tig0019430 | CDS | 7246 | 7359 | 7246 | ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1 |
tig0019430 | CDS | 6617 | 6673 | 6617 | ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1 |
tig0019430 | CDS | 6445 | 6530 | 6445 | ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1 |
tig0019430 | CDS | 6038 | 6158 | 6038 | ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1 |
tig0019430 | three_prime_UTR | 5651 | 6037 | 5651 | ID=Msa1373320-mRNA-1:three_prime_utr;Parent=Msa1373320-mRNA-1 |
Gene Sequence |
Protein sequence |