AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1373320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373320 MtrunA17_Chr1g0213381 90.625 288 19 4 1 284 1 284 2.52e-162 452
Msa1373320 MtrunA17_Chr7g0214161 79.891 184 37 0 100 283 37 220 1.61e-104 303
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373320 AT2G39290.1 61.290 279 85 5 15 284 32 296 1.13e-102 301
Msa1373320 AT3G55030.1 70.048 207 59 1 78 284 29 232 1.05e-99 292

Find 122 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGACAAATTAGGGGTTTC+TGG 0.112582 tig0019430:-7905 Msa1373320:CDS
TCTTCTTTCTCAGACAAATT+AGG 0.144337 tig0019430:-7914 Msa1373320:CDS
CTTCTTTCTCAGACAAATTA+GGG 0.185465 tig0019430:-7913 Msa1373320:CDS
GAAAGAAGGCAACTAGATTT+TGG 0.200423 tig0019430:-5798 Msa1373320:three_prime_UTR
GAAGAGGAAGAAGAAGAAAT+TGG 0.202231 tig0019430:+7932 None:intergenic
GATCTAAGAATGCACCAAAT+TGG 0.237949 tig0019430:+7484 None:intergenic
AACGTGTGCGGATAACTTTC+AGG 0.269679 tig0019430:+5851 None:intergenic
CTTCTGCAGGGCTCGCCTTA+TGG 0.285511 tig0019430:-6086 Msa1373320:CDS
ATGAACTTAAAATCCCAATT+TGG 0.289154 tig0019430:-7498 Msa1373320:CDS
AATTTGGAAGGTTCAGGTTT+AGG 0.294883 tig0019430:+7845 None:intergenic
TTGTATATATGAGGAAAATT+TGG 0.305878 tig0019430:-6056 Msa1373320:CDS
TCGGTTACTGATTGGCTTGA+TGG 0.314356 tig0019430:-7623 Msa1373320:CDS
TGGTGGTGAATGTTTCTATA+AGG 0.336822 tig0019430:+7980 None:intergenic
GTGAGCAATTTGGAAGGTTC+AGG 0.341309 tig0019430:+7839 None:intergenic
GAAGGTTCAGGTTTAGGTTC+AGG 0.343225 tig0019430:+7851 None:intergenic
TTTGTATATAGCTTTCTATA+TGG 0.348834 tig0019430:-7693 Msa1373320:intron
ATGATGGCAATGGCAGGTAT+AGG 0.358335 tig0019430:+7256 None:intergenic
CACTGTAGTTGCAATTTAAC+TGG 0.359824 tig0019430:+5654 None:intergenic
TTGCTGCCTCGGTTACTGAT+TGG 0.370730 tig0019430:-7631 Msa1373320:CDS
GCGTTGCTTTATACTTCTGC+AGG 0.371218 tig0019430:-6099 Msa1373320:CDS
GGTGGGCAGAGTGAGCAATT+TGG 0.375572 tig0019430:+7829 None:intergenic
AGGGCTCGCCTTATGGTCAT+TGG 0.390373 tig0019430:-6079 Msa1373320:CDS
ATACCTGCCATTGCCATCAT+TGG 0.391623 tig0019430:-7253 Msa1373320:CDS
ATCTAAGAATGCACCAAATT+GGG 0.400128 tig0019430:+7485 None:intergenic
CCTCTAAAAGCTTACTATCC+TGG 0.403316 tig0019430:+6616 None:intergenic
CAGGGAATGGGCAGCTTCCC+AGG 0.403525 tig0019430:-6634 Msa1373320:CDS
GGTCATTGGTTGTATATATG+AGG 0.404412 tig0019430:-6065 Msa1373320:CDS
TAGGGAGTAGCCAGGGTAGT+TGG 0.414090 tig0019430:+7275 None:intergenic
GATGGGTTTGGTCCTGGACT+TGG 0.414128 tig0019430:+8015 None:intergenic
GGTCCTGGACTTGGCGGCAG+TGG 0.415176 tig0019430:+8024 None:intergenic
GGCTGTTGCTGTAAATAACT+TGG 0.415831 tig0019430:-6509 Msa1373320:CDS
TCAGGTTTAGGTTCAGGTTG+TGG 0.416772 tig0019430:+7857 None:intergenic
AGATTACCATGTCTGCTGTC+AGG 0.423266 tig0019430:-6653 Msa1373320:CDS
AAGAGGAAGAAGAAGAAATT+GGG 0.423557 tig0019430:+7933 None:intergenic
GATTTGCTTGTCCGGTGAAT+TGG 0.424888 tig0019430:-8114 Msa1373320:five_prime_UTR
AGTCCCGGGTCGCGAGGAGG+AGG 0.426213 tig0019430:+6449 None:intergenic
TGATGGCAATGGCAGGTATA+GGG 0.434558 tig0019430:+7257 None:intergenic
CTGTAAATAACTTGGGGAAG+TGG 0.438180 tig0019430:-6501 Msa1373320:CDS
ACAGGTACCTTGTCAGCAAC+AGG 0.446463 tig0019430:+7462 None:intergenic
GCTGCCTTTGTAGTGGGGTC+TGG 0.448252 tig0019430:-6126 Msa1373320:CDS
GGTGGTGAATGTTTCTATAA+GGG 0.450824 tig0019430:+7981 None:intergenic
CTCTAAAAGCTTACTATCCT+GGG 0.451476 tig0019430:+6617 None:intergenic
AGGGAGTAGCCAGGGTAGTT+GGG 0.452299 tig0019430:+7276 None:intergenic
CCATGTCTGCTGTCAGGGAA+TGG 0.452876 tig0019430:-6647 Msa1373320:CDS
AGCGGTTGCGCTCAGTTTCA+AGG 0.457872 tig0019430:+8078 None:intergenic
CTTATTATGTACTAGACCCT+TGG 0.460718 tig0019430:-7314 Msa1373320:CDS
CAGCCACTGCCGCCAAGTCC+AGG 0.464455 tig0019430:-8027 Msa1373320:CDS
GATGAAGATGGGTTTGGTCC+TGG 0.465842 tig0019430:+8009 None:intergenic
GGAGGAGCTGCCTTTGTAGT+GGG 0.469667 tig0019430:-6132 Msa1373320:CDS
AGCAATGAAAATTGTGGTAC+TGG 0.471953 tig0019430:+7649 None:intergenic
GTGGTTACCGACGTCACAAA+AGG 0.473157 tig0019430:-5949 Msa1373320:three_prime_UTR
CTTAGATCCTGTTGCTGACA+AGG 0.479252 tig0019430:-7469 Msa1373320:intron
GCTGTTGCTGTAAATAACTT+GGG 0.480082 tig0019430:-6508 Msa1373320:CDS
CATTACCTCTCTTCCAATGA+TGG 0.481958 tig0019430:+7240 None:intergenic
CATGTCTGCTGTCAGGGAAT+GGG 0.482501 tig0019430:-6646 Msa1373320:CDS
GGGTTTGGTCCTGGACTTGG+CGG 0.486026 tig0019430:+8018 None:intergenic
TAACCACACAACAGGAGAAT+CGG 0.488145 tig0019430:+5965 None:intergenic
TAAATAGATACCTCAAGTCC+CGG 0.490023 tig0019430:+6434 None:intergenic
TATATAGCTTTCTATATGGA+TGG 0.490246 tig0019430:-7689 Msa1373320:intron
ACTTTCAGGAATAGTAGAAA+TGG 0.492678 tig0019430:+5865 None:intergenic
CTGCCCACCATTCTCACACT+TGG 0.496973 tig0019430:-7815 Msa1373320:CDS
GATAGAGATGAAGATGGGTT+TGG 0.498739 tig0019430:+8003 None:intergenic
GACGTCGGTAACCACACAAC+AGG 0.507865 tig0019430:+5957 None:intergenic
TGGAGGAGCTGCCTTTGTAG+TGG 0.508908 tig0019430:-6133 Msa1373320:CDS
TCCTCGCGACCCGGGACTTG+AGG 0.512133 tig0019430:-6444 Msa1373320:intron
GCTTATGGTTGCCGCCACAT+TGG 0.512365 tig0019430:-7338 Msa1373320:CDS
GATTACCATGTCTGCTGTCA+GGG 0.518665 tig0019430:-6652 Msa1373320:CDS
GGCAGGTATAGGGAGTAGCC+AGG 0.520558 tig0019430:+7267 None:intergenic
GACTTACTAGCAACAAGAAG+GGG 0.521194 tig0019430:+7776 None:intergenic
ATATACAACCAATGACCATA+AGG 0.522448 tig0019430:+6071 None:intergenic
GTATCTTTGCCCAACTACCC+TGG 0.523614 tig0019430:-7285 Msa1373320:CDS
GACACGACCAAGTGTGAGAA+TGG 0.529892 tig0019430:+7808 None:intergenic
AAAATAGTGATTTGCTTGTC+CGG 0.532097 tig0019430:-8122 Msa1373320:five_prime_UTR
ACAGATAGAAGAAGAAGAAG+CGG 0.536223 tig0019430:+8060 None:intergenic
CTTCCAATGATGGCAATGGC+AGG 0.538644 tig0019430:+7250 None:intergenic
GACATCATCAACCAATTCAC+CGG 0.541296 tig0019430:+8103 None:intergenic
TTCTATATGGATGGTTGGCG+TGG 0.541796 tig0019430:-7680 Msa1373320:CDS
TAGCTTTCTATATGGATGGT+TGG 0.541898 tig0019430:-7685 Msa1373320:CDS
CCATTCCCTGACAGCAGACA+TGG 0.547207 tig0019430:+6647 None:intergenic
CGTTGCTTTATACTTCTGCA+GGG 0.549588 tig0019430:-6098 Msa1373320:CDS
ATAATAACATACCAGAAGAA+AGG 0.551084 tig0019430:+5701 None:intergenic
GGTTTAGGTTCAGGTTGTGG+TGG 0.555201 tig0019430:+7860 None:intergenic
CTCTCTTCCAATGATGGCAA+TGG 0.555438 tig0019430:+7246 None:intergenic
TTGTGACGCGTCCATGTTGG+TGG 0.559472 tig0019430:+7963 None:intergenic
CGACCAAGTGTGAGAATGGT+GGG 0.560193 tig0019430:+7812 None:intergenic
ATAAGGGATAGAGATGAAGA+TGG 0.560789 tig0019430:+7997 None:intergenic
AAGACTTACTAGCAACAAGA+AGG 0.569579 tig0019430:+7774 None:intergenic
GGATATATATGTGAAATACA+TGG 0.569622 tig0019430:+6002 None:intergenic
GGCAAAGATACCAACATCCA+AGG 0.570230 tig0019430:+7297 None:intergenic
TGTACTAGACCCTTGGATGT+TGG 0.572861 tig0019430:-7307 Msa1373320:CDS
TGGTTACCGACGTCACAAAA+GGG 0.573280 tig0019430:-5948 Msa1373320:three_prime_UTR
TAAGGGATAGAGATGAAGAT+GGG 0.578208 tig0019430:+7998 None:intergenic
GGTGAATTGGTTGATGATGT+CGG 0.579366 tig0019430:-8101 Msa1373320:exon
ACTTGGCGGCAGTGGCTGAA+CGG 0.582509 tig0019430:+8032 None:intergenic
TGATGGCTATATTGCTCGCA+AGG 0.583037 tig0019430:-7606 Msa1373320:intron
GAGGAGCTGCCTTTGTAGTG+GGG 0.587924 tig0019430:-6131 Msa1373320:CDS
AGACTTACTAGCAACAAGAA+GGG 0.595087 tig0019430:+7775 None:intergenic
CATTGCCATCATTGGAAGAG+AGG 0.598467 tig0019430:-7245 Msa1373320:intron
CACAAAAGGGAGCTGCATAG+TGG 0.600747 tig0019430:-5935 Msa1373320:three_prime_UTR
AAATAGATACCTCAAGTCCC+GGG 0.611811 tig0019430:+6435 None:intergenic
GCTCCGATTCTCCTGTTGTG+TGG 0.612904 tig0019430:-5968 Msa1373320:three_prime_UTR
TTCTTTCTCAGACAAATTAG+GGG 0.614292 tig0019430:-7912 Msa1373320:CDS
ATATATGAGGAAAATTTGGA+AGG 0.614928 tig0019430:-6052 Msa1373320:CDS
CGAGGCAGCAATGAAAATTG+TGG 0.615674 tig0019430:+7643 None:intergenic
AACACCAGACCCCACTACAA+AGG 0.616087 tig0019430:+6122 None:intergenic
ACGACCAAGTGTGAGAATGG+TGG 0.617760 tig0019430:+7811 None:intergenic
GCAGGTATAGGGAGTAGCCA+GGG 0.619917 tig0019430:+7268 None:intergenic
TAATTTGTCTGAGAAAGAAG+AGG 0.626633 tig0019430:+7916 None:intergenic
AGAAACATTCACCACCAACA+TGG 0.632356 tig0019430:-7974 Msa1373320:CDS
GGCAGAGTGAGCAATTTGGA+AGG 0.632472 tig0019430:+7833 None:intergenic
AAATTTGGAAGGTGTTGTTG+AGG 0.632998 tig0019430:-6041 Msa1373320:CDS
TAGTTGTGACGCGTCCATGT+TGG 0.635478 tig0019430:+7960 None:intergenic
TTTATTACTTACAGTGACTG+GGG 0.636818 tig0019430:+5823 None:intergenic
CTGTTGCTGTAAATAACTTG+GGG 0.642896 tig0019430:-6507 Msa1373320:CDS
ACTTACTAGCAACAAGAAGG+GGG 0.658643 tig0019430:+7777 None:intergenic
AGGTAACTGAAAAGTAAACA+AGG 0.658868 tig0019430:+5721 None:intergenic
GCAAAGATACCAACATCCAA+GGG 0.664746 tig0019430:+7298 None:intergenic
ACATAATAAGACCAATGTGG+CGG 0.672036 tig0019430:+7327 None:intergenic
ATCAAGCCAATCAGTAACCG+AGG 0.672140 tig0019430:+7625 None:intergenic
GGCTAACGCAGTCATCTGTG+TGG 0.691702 tig0019430:+6471 None:intergenic
AATGAAAATTGTGGTACTGG+CGG 0.723059 tig0019430:+7652 None:intergenic
AGTACATAATAAGACCAATG+TGG 0.733330 tig0019430:+7324 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAGAAAAAAATAAAAATA+AGG + tig0019430:7159-7178 None:intergenic 10.0%
!!! ATTTATTTTTTTTCCATTGA+CGG - tig0019430:5662-5681 Msa1373320:three_prime_UTR 15.0%
!!! CATATATATCCAATTTTTTT+TGG - tig0019430:7854-7873 Msa1373320:CDS 15.0%
!! AATGAATGTGAAATTGTAAT+TGG + tig0019430:6122-6141 None:intergenic 20.0%
!! TTTGTATATAGCTTTCTATA+TGG - tig0019430:6151-6170 Msa1373320:intron 20.0%
!! CAAATATCAAACATAGTAAT+AGG + tig0019430:6311-6330 None:intergenic 20.0%
!! ATTGTATTGTAATATGCAAT+AGG + tig0019430:6419-6438 None:intergenic 20.0%
!! ATAAGTTATAAGTAAAGCAT+GGG + tig0019430:6650-6669 None:intergenic 20.0%
!! AATAAGTTATAAGTAAAGCA+TGG + tig0019430:6651-6670 None:intergenic 20.0%
!! TAAAAATAAGGAATCTGATT+TGG + tig0019430:7147-7166 None:intergenic 20.0%
!! ATAATGAAACTTGGTATAAT+AGG - tig0019430:7314-7333 Msa1373320:CDS 20.0%
!!! TCTATTTACTTTGTATTTTG+AGG - tig0019430:7425-7444 Msa1373320:intron 20.0%
!!! TATAGAAAAATAACTCCTTT+TGG - tig0019430:7565-7584 Msa1373320:intron 20.0%
!! TTGTATATATGAGGAAAATT+TGG - tig0019430:7788-7807 Msa1373320:CDS 20.0%
!! GTAAGTAATAAAAAGAAAGA+AGG - tig0019430:8032-8051 Msa1373320:CDS 20.0%
! AAATTGTAATTGGCATATGA+TGG + tig0019430:6112-6131 None:intergenic 25.0%
! TATATAGCTTTCTATATGGA+TGG - tig0019430:6155-6174 Msa1373320:intron 25.0%
! ACATAGTAATAGGAAAAGTA+GGG + tig0019430:6301-6320 None:intergenic 25.0%
! AACATAGTAATAGGAAAAGT+AGG + tig0019430:6302-6321 None:intergenic 25.0%
! ATGAACTTAAAATCCCAATT+TGG - tig0019430:6346-6365 Msa1373320:intron 25.0%
! TTGTAATATGCAATAGGAAT+AGG + tig0019430:6413-6432 None:intergenic 25.0%
!!! TATTTAACTTGCCTTTACTT+TGG + tig0019430:6771-6790 None:intergenic 25.0%
! ATTGCTTGATAAACAAACAT+TGG + tig0019430:6848-6867 None:intergenic 25.0%
! TCAAAAGCTTCATTGTTTAA+TGG - tig0019430:7017-7036 Msa1373320:intron 25.0%
! GACTGAAATCCATATTTATA+TGG - tig0019430:7039-7058 Msa1373320:intron 25.0%
! GGCTAATTACCATATAAATA+TGG + tig0019430:7051-7070 None:intergenic 25.0%
!! CATATTTTCTTCTGATTTAC+TGG - tig0019430:7107-7126 Msa1373320:intron 25.0%
!!! AATAATTTGCTCTAAACTTC+AGG - tig0019430:7519-7538 Msa1373320:intron 25.0%
! CTTATAAACTCAAATCCAAA+AGG + tig0019430:7583-7602 None:intergenic 25.0%
!! TGCTTAAAACACAATTTTCA+GGG + tig0019430:7641-7660 None:intergenic 25.0%
! ATATATGAGGAAAATTTGGA+AGG - tig0019430:7792-7811 Msa1373320:CDS 25.0%
! GGATATATATGTGAAATACA+TGG + tig0019430:7845-7864 None:intergenic 25.0%
!! TTTTATTACTTACAGTGACT+GGG + tig0019430:8025-8044 None:intergenic 25.0%
!! TTTTTATTACTTACAGTGAC+TGG + tig0019430:8026-8045 None:intergenic 25.0%
! ATAATAACATACCAGAAGAA+AGG + tig0019430:8146-8165 None:intergenic 25.0%
!! AAAATAGTGATTTGCTTGTC+CGG - tig0019430:5722-5741 Msa1373320:three_prime_UTR 30.0%
AAGAGGAAGAAGAAGAAATT+GGG + tig0019430:5914-5933 None:intergenic 30.0%
! TAATTTGTCTGAGAAAGAAG+AGG + tig0019430:5931-5950 None:intergenic 30.0%
TCTTCTTTCTCAGACAAATT+AGG - tig0019430:5930-5949 Msa1373320:three_prime_UTR 30.0%
CTTCTTTCTCAGACAAATTA+GGG - tig0019430:5931-5950 Msa1373320:three_prime_UTR 30.0%
TTCTTTCTCAGACAAATTAG+GGG - tig0019430:5932-5951 Msa1373320:three_prime_UTR 30.0%
ATCTAAGAATGCACCAAATT+GGG + tig0019430:6362-6381 None:intergenic 30.0%
AATATGCAATAGGAATAGGT+AGG + tig0019430:6409-6428 None:intergenic 30.0%
AGTACATAATAAGACCAATG+TGG + tig0019430:6523-6542 None:intergenic 30.0%
!!! TGTTTTAATCTAGAATGCTC+TGG - tig0019430:6879-6898 Msa1373320:intron 30.0%
AATTAAGCCAGACAATTTGT+TGG - tig0019430:6923-6942 Msa1373320:intron 30.0%
GCAAAGCAAAATACAATTAC+AGG + tig0019430:6964-6983 None:intergenic 30.0%
! AATTGTATTTTGCTTTGCCA+TGG - tig0019430:6966-6985 Msa1373320:intron 30.0%
TTAACTATGCATAATGACCA+TGG + tig0019430:6986-7005 None:intergenic 30.0%
! TATGATGTCTCAAAAGCATA+AGG + tig0019430:7091-7110 None:intergenic 30.0%
TGAGCTTGTATAATGAAACT+TGG - tig0019430:7305-7324 Msa1373320:CDS 30.0%
! GCTTAAAACACAATTTTCAG+GGG + tig0019430:7640-7659 None:intergenic 30.0%
! GTGCTTAAAACACAATTTTC+AGG + tig0019430:7642-7661 None:intergenic 30.0%
ATATACAACCAATGACCATA+AGG + tig0019430:7776-7795 None:intergenic 30.0%
ACTTTCAGGAATAGTAGAAA+TGG + tig0019430:7982-8001 None:intergenic 30.0%
TTTATTACTTACAGTGACTG+GGG + tig0019430:8024-8043 None:intergenic 30.0%
! TTCGTGTTTCGAATTTTCTA+TGG + tig0019430:8091-8110 None:intergenic 30.0%
AGGTAACTGAAAAGTAAACA+AGG + tig0019430:8126-8145 None:intergenic 30.0%
!!! TTCACTTTTTTCTCCGTCAA+TGG + tig0019430:5678-5697 None:intergenic 35.0%
ACAGATAGAAGAAGAAGAAG+CGG + tig0019430:5787-5806 None:intergenic 35.0%
TAAGGGATAGAGATGAAGAT+GGG + tig0019430:5849-5868 None:intergenic 35.0%
ATAAGGGATAGAGATGAAGA+TGG + tig0019430:5850-5869 None:intergenic 35.0%
! GGTGGTGAATGTTTCTATAA+GGG + tig0019430:5866-5885 None:intergenic 35.0%
! TGGTGGTGAATGTTTCTATA+AGG + tig0019430:5867-5886 None:intergenic 35.0%
GAAGAGGAAGAAGAAGAAAT+TGG + tig0019430:5915-5934 None:intergenic 35.0%
! AATTTGGAAGGTTCAGGTTT+AGG + tig0019430:6002-6021 None:intergenic 35.0%
AGACTTACTAGCAACAAGAA+GGG + tig0019430:6072-6091 None:intergenic 35.0%
AAGACTTACTAGCAACAAGA+AGG + tig0019430:6073-6092 None:intergenic 35.0%
! TGTAATTGGCATATGATGGA+TGG + tig0019430:6108-6127 None:intergenic 35.0%
TAGCTTTCTATATGGATGGT+TGG - tig0019430:6159-6178 Msa1373320:intron 35.0%
! AATGAAAATTGTGGTACTGG+CGG + tig0019430:6195-6214 None:intergenic 35.0%
AGCAATGAAAATTGTGGTAC+TGG + tig0019430:6198-6217 None:intergenic 35.0%
! AAAGTAGGGTTAGTAAGTGT+GGG + tig0019430:6287-6306 None:intergenic 35.0%
! AAAAGTAGGGTTAGTAAGTG+TGG + tig0019430:6288-6307 None:intergenic 35.0%
GATCTAAGAATGCACCAAAT+TGG + tig0019430:6363-6382 None:intergenic 35.0%
ACATAATAAGACCAATGTGG+CGG + tig0019430:6520-6539 None:intergenic 35.0%
CTTATTATGTACTAGACCCT+TGG - tig0019430:6530-6549 Msa1373320:intron 35.0%
AATGAACTGAGCCAAAGTAA+AGG - tig0019430:6757-6776 Msa1373320:intron 35.0%
! TAATCAGTTTTCCTGTGTGT+TGG - tig0019430:6789-6808 Msa1373320:intron 35.0%
GAATTCATATTTCCCTTGTC+TGG - tig0019430:6818-6837 Msa1373320:intron 35.0%
AAGGAAAATACACGAGAGTA+TGG + tig0019430:7072-7091 None:intergenic 35.0%
! CTCTAAAAGCTTACTATCCT+GGG + tig0019430:7230-7249 None:intergenic 35.0%
! TAGTTGATTCAAGTGTACAG+GGG + tig0019430:7264-7283 None:intergenic 35.0%
! CTAGTTGATTCAAGTGTACA+GGG + tig0019430:7265-7284 None:intergenic 35.0%
GCTGTTGCTGTAAATAACTT+GGG - tig0019430:7336-7355 Msa1373320:CDS 35.0%
CTGTTGCTGTAAATAACTTG+GGG - tig0019430:7337-7356 Msa1373320:CDS 35.0%
TAAATAGATACCTCAAGTCC+CGG + tig0019430:7413-7432 None:intergenic 35.0%
!! TTCCCATTTTTCTTCAGTCA+TGG - tig0019430:7691-7710 Msa1373320:intron 35.0%
CTCCATGACTGAAGAAAAAT+GGG + tig0019430:7696-7715 None:intergenic 35.0%
! GGTCATTGGTTGTATATATG+AGG - tig0019430:7779-7798 Msa1373320:intron 35.0%
!! AAATTTGGAAGGTGTTGTTG+AGG - tig0019430:7803-7822 Msa1373320:CDS 35.0%
GAATCGGAGCCAAAAAAAAT+TGG + tig0019430:7866-7885 None:intergenic 35.0%
! GAAAGAAGGCAACTAGATTT+TGG - tig0019430:8046-8065 Msa1373320:CDS 35.0%
!!! CAACTAGATTTTGGAGTCAT+CGG - tig0019430:8055-8074 Msa1373320:CDS 35.0%
! GTGTTTCGAATTTTCTATGG+TGG + tig0019430:8088-8107 None:intergenic 35.0%
! CTTTTCAGTTACCTTTCTTC+TGG - tig0019430:8132-8151 Msa1373320:five_prime_UTR 35.0%
CACTGTAGTTGCAATTTAAC+TGG + tig0019430:8193-8212 None:intergenic 35.0%
GACATCATCAACCAATTCAC+CGG + tig0019430:5744-5763 None:intergenic 40.0%
!! GGTGAATTGGTTGATGATGT+CGG - tig0019430:5743-5762 Msa1373320:three_prime_UTR 40.0%
! GATAGAGATGAAGATGGGTT+TGG + tig0019430:5844-5863 None:intergenic 40.0%
AGAAACATTCACCACCAACA+TGG - tig0019430:5870-5889 Msa1373320:three_prime_UTR 40.0%
TCAGACAAATTAGGGGTTTC+TGG - tig0019430:5939-5958 Msa1373320:three_prime_UTR 40.0%
ACTTACTAGCAACAAGAAGG+GGG + tig0019430:6070-6089 None:intergenic 40.0%
GACTTACTAGCAACAAGAAG+GGG + tig0019430:6071-6090 None:intergenic 40.0%
!! ATTGGCATATGATGGATGGA+AGG + tig0019430:6104-6123 None:intergenic 40.0%
! CACAATTTTCATTGCTGCCT+CGG - tig0019430:6202-6221 Msa1373320:intron 40.0%
CAATAGGAATAGGTAGGTAC+AGG + tig0019430:6403-6422 None:intergenic 40.0%
CTTCTACTCATTGCAGCTTA+TGG - tig0019430:6491-6510 Msa1373320:CDS 40.0%
GCAAAGATACCAACATCCAA+GGG + tig0019430:6549-6568 None:intergenic 40.0%
CATTACCTCTCTTCCAATGA+TGG + tig0019430:6607-6626 None:intergenic 40.0%
TCTTCATGTATCACCACTTG+TGG - tig0019430:6710-6729 Msa1373320:intron 40.0%
CTTCATGTATCACCACTTGT+GGG - tig0019430:6711-6730 Msa1373320:intron 40.0%
! AGTTTTCCTGTGTGTTGGAT+TGG - tig0019430:6794-6813 Msa1373320:intron 40.0%
AATTCTCCAATCCAACACAC+AGG + tig0019430:6803-6822 None:intergenic 40.0%
AACATTGGAGATCCAGACAA+GGG + tig0019430:6833-6852 None:intergenic 40.0%
AAACATTGGAGATCCAGACA+AGG + tig0019430:6834-6853 None:intergenic 40.0%
CGATATGCCAACAAATTGTC+TGG + tig0019430:6933-6952 None:intergenic 40.0%
AGCAGACATGGTAATCTACT+TGG + tig0019430:7188-7207 None:intergenic 40.0%
! CCTCTAAAAGCTTACTATCC+TGG + tig0019430:7231-7250 None:intergenic 40.0%
! CCAGGATAGTAAGCTTTTAG+AGG - tig0019430:7228-7247 Msa1373320:intron 40.0%
! GCTAGTTGATTCAAGTGTAC+AGG + tig0019430:7266-7285 None:intergenic 40.0%
GTACACTTGAATCAACTAGC+TGG - tig0019430:7266-7285 Msa1373320:CDS 40.0%
GGCTGTTGCTGTAAATAACT+TGG - tig0019430:7335-7354 Msa1373320:CDS 40.0%
CTGTAAATAACTTGGGGAAG+TGG - tig0019430:7343-7362 Msa1373320:intron 40.0%
AAATAGATACCTCAAGTCCC+GGG + tig0019430:7412-7431 None:intergenic 40.0%
CCTCCATGACTGAAGAAAAA+TGG + tig0019430:7697-7716 None:intergenic 40.0%
!! CCATTTTTCTTCAGTCATGG+AGG - tig0019430:7694-7713 Msa1373320:intron 40.0%
! CGTTGCTTTATACTTCTGCA+GGG - tig0019430:7746-7765 Msa1373320:intron 40.0%
TAACCACACAACAGGAGAAT+CGG + tig0019430:7882-7901 None:intergenic 40.0%
! GATTTGCTTGTCCGGTGAAT+TGG - tig0019430:5730-5749 Msa1373320:three_prime_UTR 45.0%
!! TCAGGTTTAGGTTCAGGTTG+TGG + tig0019430:5990-6009 None:intergenic 45.0%
! GAAGGTTCAGGTTTAGGTTC+AGG + tig0019430:5996-6015 None:intergenic 45.0%
GTGAGCAATTTGGAAGGTTC+AGG + tig0019430:6008-6027 None:intergenic 45.0%
TTCTATATGGATGGTTGGCG+TGG - tig0019430:6164-6183 Msa1373320:intron 45.0%
CGAGGCAGCAATGAAAATTG+TGG + tig0019430:6204-6223 None:intergenic 45.0%
ATCAAGCCAATCAGTAACCG+AGG + tig0019430:6222-6241 None:intergenic 45.0%
!! TCGGTTACTGATTGGCTTGA+TGG - tig0019430:6221-6240 Msa1373320:intron 45.0%
TGATGGCTATATTGCTCGCA+AGG - tig0019430:6238-6257 Msa1373320:intron 45.0%
CTTAGATCCTGTTGCTGACA+AGG - tig0019430:6375-6394 Msa1373320:intron 45.0%
TGTACTAGACCCTTGGATGT+TGG - tig0019430:6537-6556 Msa1373320:intron 45.0%
GGCAAAGATACCAACATCCA+AGG + tig0019430:6550-6569 None:intergenic 45.0%
TGATGGCAATGGCAGGTATA+GGG + tig0019430:6590-6609 None:intergenic 45.0%
ATGATGGCAATGGCAGGTAT+AGG + tig0019430:6591-6610 None:intergenic 45.0%
ATACCTGCCATTGCCATCAT+TGG - tig0019430:6591-6610 Msa1373320:intron 45.0%
CTCTCTTCCAATGATGGCAA+TGG + tig0019430:6601-6620 None:intergenic 45.0%
CATTGCCATCATTGGAAGAG+AGG - tig0019430:6599-6618 Msa1373320:intron 45.0%
AAGAAGCAACCTCACATGGT+TGG + tig0019430:6694-6713 None:intergenic 45.0%
CATGAAGAAGCAACCTCACA+TGG + tig0019430:6698-6717 None:intergenic 45.0%
GTATCACCACTTGTGGGATA+AGG - tig0019430:6717-6736 Msa1373320:intron 45.0%
AGATTACCATGTCTGCTGTC+AGG - tig0019430:7191-7210 Msa1373320:intron 45.0%
GATTACCATGTCTGCTGTCA+GGG - tig0019430:7192-7211 Msa1373320:intron 45.0%
! AAGCACTGTCATTGACTGAG+AGG - tig0019430:7656-7675 Msa1373320:CDS 45.0%
! GCGTTGCTTTATACTTCTGC+AGG - tig0019430:7745-7764 Msa1373320:intron 45.0%
TGGTTACCGACGTCACAAAA+GGG - tig0019430:7896-7915 Msa1373320:CDS 45.0%
AACGTGTGCGGATAACTTTC+AGG + tig0019430:7996-8015 None:intergenic 45.0%
! GATGAAGATGGGTTTGGTCC+TGG + tig0019430:5838-5857 None:intergenic 50.0%
TAGTTGTGACGCGTCCATGT+TGG + tig0019430:5887-5906 None:intergenic 50.0%
!! GGTTTAGGTTCAGGTTGTGG+TGG + tig0019430:5987-6006 None:intergenic 50.0%
GGCAGAGTGAGCAATTTGGA+AGG + tig0019430:6014-6033 None:intergenic 50.0%
CGACCAAGTGTGAGAATGGT+GGG + tig0019430:6035-6054 None:intergenic 50.0%
ACGACCAAGTGTGAGAATGG+TGG + tig0019430:6036-6055 None:intergenic 50.0%
GACACGACCAAGTGTGAGAA+TGG + tig0019430:6039-6058 None:intergenic 50.0%
TTGCTGCCTCGGTTACTGAT+TGG - tig0019430:6213-6232 Msa1373320:intron 50.0%
ACAGGTACCTTGTCAGCAAC+AGG + tig0019430:6385-6404 None:intergenic 50.0%
GTATCTTTGCCCAACTACCC+TGG - tig0019430:6559-6578 Msa1373320:intron 50.0%
CTTCCAATGATGGCAATGGC+AGG + tig0019430:6597-6616 None:intergenic 50.0%
ACATCAACGCCAACCATGTG+AGG - tig0019430:6682-6701 Msa1373320:intron 50.0%
ACCACTTGTGGGATAAGGCT+TGG - tig0019430:6722-6741 Msa1373320:intron 50.0%
! ACCAAGCCTTATCCCACAAG+TGG + tig0019430:6726-6745 None:intergenic 50.0%
! GTGGGATAAGGCTTGGTTGT+TGG - tig0019430:6729-6748 Msa1373320:intron 50.0%
CATGTCTGCTGTCAGGGAAT+GGG - tig0019430:7198-7217 Msa1373320:intron 50.0%
AACACCAGACCCCACTACAA+AGG + tig0019430:7725-7744 None:intergenic 50.0%
GTGGTTACCGACGTCACAAA+AGG - tig0019430:7895-7914 Msa1373320:CDS 50.0%
CACAAAAGGGAGCTGCATAG+TGG - tig0019430:7909-7928 Msa1373320:CDS 50.0%
ACTGGGGACAAAAACGTGTG+CGG + tig0019430:8008-8027 None:intergenic 50.0%
AGCGGTTGCGCTCAGTTTCA+AGG + tig0019430:5769-5788 None:intergenic 55.0%
! GATGGGTTTGGTCCTGGACT+TGG + tig0019430:5832-5851 None:intergenic 55.0%
TTGTGACGCGTCCATGTTGG+TGG + tig0019430:5884-5903 None:intergenic 55.0%
GGTGGGCAGAGTGAGCAATT+TGG + tig0019430:6018-6037 None:intergenic 55.0%
CTGCCCACCATTCTCACACT+TGG - tig0019430:6029-6048 Msa1373320:exon 55.0%
AGCAACAAGAAGGGGGACTG+CGG + tig0019430:6063-6082 None:intergenic 55.0%
GCTTATGGTTGCCGCCACAT+TGG - tig0019430:6506-6525 Msa1373320:CDS 55.0%
AGGGAGTAGCCAGGGTAGTT+GGG + tig0019430:6571-6590 None:intergenic 55.0%
TAGGGAGTAGCCAGGGTAGT+TGG + tig0019430:6572-6591 None:intergenic 55.0%
GCAGGTATAGGGAGTAGCCA+GGG + tig0019430:6579-6598 None:intergenic 55.0%
CCATTCCCTGACAGCAGACA+TGG + tig0019430:7200-7219 None:intergenic 55.0%
CCATGTCTGCTGTCAGGGAA+TGG - tig0019430:7197-7216 Msa1373320:intron 55.0%
GGCTAACGCAGTCATCTGTG+TGG + tig0019430:7376-7395 None:intergenic 55.0%
TGGAGGAGCTGCCTTTGTAG+TGG - tig0019430:7711-7730 Msa1373320:intron 55.0%
GGAGGAGCTGCCTTTGTAGT+GGG - tig0019430:7712-7731 Msa1373320:intron 55.0%
GAGGAGCTGCCTTTGTAGTG+GGG - tig0019430:7713-7732 Msa1373320:intron 55.0%
AGGGCTCGCCTTATGGTCAT+TGG - tig0019430:7765-7784 Msa1373320:intron 55.0%
GCTCCGATTCTCCTGTTGTG+TGG - tig0019430:7876-7895 Msa1373320:CDS 55.0%
GACGTCGGTAACCACACAAC+AGG + tig0019430:7890-7909 None:intergenic 55.0%
! GCAGCTCCCTTTTGTGACGT+CGG + tig0019430:7905-7924 None:intergenic 55.0%
ACTTGGCGGCAGTGGCTGAA+CGG + tig0019430:5815-5834 None:intergenic 60.0%
! GGGTTTGGTCCTGGACTTGG+CGG + tig0019430:5829-5848 None:intergenic 60.0%
GGCAGGTATAGGGAGTAGCC+AGG + tig0019430:6580-6599 None:intergenic 60.0%
! GCTGCCTTTGTAGTGGGGTC+TGG - tig0019430:7718-7737 Msa1373320:intron 60.0%
CTTCTGCAGGGCTCGCCTTA+TGG - tig0019430:7758-7777 Msa1373320:intron 60.0%
CAGGGAATGGGCAGCTTCCC+AGG - tig0019430:7210-7229 Msa1373320:intron 65.0%
CAGCCACTGCCGCCAAGTCC+AGG - tig0019430:5817-5836 Msa1373320:three_prime_UTR 70.0%
GGTCCTGGACTTGGCGGCAG+TGG + tig0019430:5823-5842 None:intergenic 70.0%
TAGCCCTCCTCCTCGCGACC+CGG - tig0019430:7391-7410 Msa1373320:intron 70.0%
TCAAGTCCCGGGTCGCGAGG+AGG + tig0019430:7401-7420 None:intergenic 70.0%
TCCTCGCGACCCGGGACTTG+AGG - tig0019430:7400-7419 Msa1373320:intron 70.0%
ACCTCAAGTCCCGGGTCGCG+AGG + tig0019430:7404-7423 None:intergenic 70.0%
AGCCCTCCTCCTCGCGACCC+GGG - tig0019430:7392-7411 Msa1373320:intron 75.0%
GTCCCGGGTCGCGAGGAGGA+GGG + tig0019430:7397-7416 None:intergenic 75.0%
AGTCCCGGGTCGCGAGGAGG+AGG + tig0019430:7398-7417 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0019430 gene 5651 8215 5651 ID=Msa1373320;Name=Msa1373320
tig0019430 mRNA 5651 8215 5651 ID=Msa1373320-mRNA-1;Parent=Msa1373320;Name=Msa1373320-mRNA-1;_AED=0.11;_eAED=0.11;_QI=105|1|1|1|1|1|7|387|284
tig0019430 exon 5651 6158 5651 ID=Msa1373320-mRNA-1:exon:3355;Parent=Msa1373320-mRNA-1
tig0019430 exon 6445 6530 6445 ID=Msa1373320-mRNA-1:exon:3354;Parent=Msa1373320-mRNA-1
tig0019430 exon 6617 6673 6617 ID=Msa1373320-mRNA-1:exon:3353;Parent=Msa1373320-mRNA-1
tig0019430 exon 7246 7359 7246 ID=Msa1373320-mRNA-1:exon:3352;Parent=Msa1373320-mRNA-1
tig0019430 exon 7470 7520 7470 ID=Msa1373320-mRNA-1:exon:3351;Parent=Msa1373320-mRNA-1
tig0019430 exon 7607 7704 7607 ID=Msa1373320-mRNA-1:exon:3350;Parent=Msa1373320-mRNA-1
tig0019430 exon 7783 8215 7783 ID=Msa1373320-mRNA-1:exon:3349;Parent=Msa1373320-mRNA-1
tig0019430 five_prime_UTR 8111 8215 8111 ID=Msa1373320-mRNA-1:five_prime_utr;Parent=Msa1373320-mRNA-1
tig0019430 CDS 7783 8110 7783 ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1
tig0019430 CDS 7607 7704 7607 ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1
tig0019430 CDS 7470 7520 7470 ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1
tig0019430 CDS 7246 7359 7246 ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1
tig0019430 CDS 6617 6673 6617 ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1
tig0019430 CDS 6445 6530 6445 ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1
tig0019430 CDS 6038 6158 6038 ID=Msa1373320-mRNA-1:cds;Parent=Msa1373320-mRNA-1
tig0019430 three_prime_UTR 5651 6037 5651 ID=Msa1373320-mRNA-1:three_prime_utr;Parent=Msa1373320-mRNA-1
Gene Sequence

>Msa1373320

ATGATGTCGGCCTTGAAACTGAGCGCAACCGCTTCTTCTTCTTCTATCTGTTTCGTCCGTTCAGCCACTGCCGCCAAGTCCAGGACCAAACCCATCTTCATCTCTATCCCTTATAGAAACATTCACCACCAACATGGACGCGTCACAACTAAATTCCCAATTTCTTCTTCTTCCTCTTCTTTCTCAGACAAATTAGGGGTTTCTGGAAAAGCTCTTGTCTCAACACTTCCACCACAACCTGAACCTAAACCTGAACCTTCCAAATTGCTCACTCTGCCCACCATTCTCACACTTGGTCGTGTCGCCGCAGTCCCCCTTCTTGTTGCTACTTTCTATATGGATGGTTGGCGTGGAACAGCCGCCAGTACCACAATTTTCATTGCTGCCTCGGTTACTGATTGGCTTGATGGCTATATTGCTCGCAAGATGAACTTAAAATCCCAATTTGGTGCATTCTTAGATCCTGTTGCTGACAAGCTTATGGTTGCCGCCACATTGGTCTTATTATGTACTAGACCCTTGGATGTTGGTATCTTTGCCCAACTACCCTGGCTACTCCCTATACCTGCCATTGCCATCATTGGAAGAGAGATTACCATGTCTGCTGTCAGGGAATGGGCAGCTTCCCAGGATAGTAAGCTTTTAGAGGCTGTTGCTGTAAATAACTTGGGGAAGTGGAAAACAGCCACACAGATGACTGCGTTAGCCCTCCTCCTCGCGACCCGGGACTTGAGTCATGGAGGAGCTGCCTTTGTAGTGGGGTCTGGTGTTGCGTTGCTTTATACTTCTGCAGGGCTCGCCTTATGGTCATTGGTTGTATATATGAGGAAAATTTGGAAGGTGTTGTTGAGGTAG

Protein sequence

>Msa1373320

MMSALKLSATASSSSICFVRSATAAKSRTKPIFISIPYRNIHHQHGRVTTKFPISSSSSSFSDKLGVSGKALVSTLPPQPEPKPEPSKLLTLPTILTLGRVAAVPLLVATFYMDGWRGTAASTTIFIAASVTDWLDGYIARKMNLKSQFGAFLDPVADKLMVAATLVLLCTRPLDVGIFAQLPWLLPIPAIAIIGREITMSAVREWAASQDSKLLEAVAVNNLGKWKTATQMTALALLLATRDLSHGGAAFVVGSGVALLYTSAGLALWSLVVYMRKIWKVLLR*