Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124930 | A0A396JTX8 | 93.266 | 297 | 20 | 0 | 38 | 334 | 16 | 312 | 0.0 | 555 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029360 | Msa0124930 | 0.826215 | 3.065085e-54 | -8.615850e-47 |
| Msa0090510 | Msa0124930 | 0.821531 | 3.843144e-53 | -8.615850e-47 |
| Msa0124930 | Msa0183910 | 0.804615 | 1.984118e-49 | -8.615850e-47 |
| Msa0124930 | Msa0374340 | -0.804458 | 2.139938e-49 | -8.615850e-47 |
| Msa0124930 | Msa1031460 | 0.816981 | 4.179098e-52 | -8.615850e-47 |
| Msa0124930 | Msa1070540 | 0.822958 | 1.792901e-53 | -8.615850e-47 |
| Msa0124930 | Msa1074350 | 0.810448 | 1.146818e-50 | -8.615850e-47 |
| Msa0124930 | Msa1101240 | 0.824347 | 8.477201e-54 | -8.615850e-47 |
| Msa0124930 | Msa1229480 | 0.813443 | 2.552836e-51 | -8.615850e-47 |
| Msa0124930 | Msa1272010 | 0.819756 | 9.826760e-53 | -8.615850e-47 |
| Msa0124930 | Msa1373320 | -0.802204 | 6.268956e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124930 | MtrunA17_Chr1g0186121 | 93.266 | 297 | 20 | 0 | 38 | 334 | 16 | 312 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCAAGAGCATGTCTATT+TGG | 0.260332 | 1_3:-52787978 | None:intergenic |
| TACCTGTTATTGAAGACTTT+GGG | 0.278202 | 1_3:+52786683 | Msa0124930:CDS |
| TTTGGTACTTTGACAATAGA+TGG | 0.307291 | 1_3:-52786502 | None:intergenic |
| TAGGTTCCATCTCAAGAAAA+AGG | 0.324911 | 1_3:+52788188 | Msa0124930:three_prime_UTR |
| TTCTGCAGAACCGGAGGAAT+TGG | 0.348481 | 1_3:-52786722 | None:intergenic |
| TACCTGTCACTGAAGACTTT+GGG | 0.350219 | 1_3:+52786809 | Msa0124930:CDS |
| TGATCATGTAGGAAAGAAAA+AGG | 0.353754 | 1_3:+52788082 | Msa0124930:CDS |
| TCTTGTCTTAATTTCACCTT+TGG | 0.358291 | 1_3:-52785530 | None:intergenic |
| AGACTTTGGGGACGGCGGTT+TGG | 0.358797 | 1_3:+52786822 | Msa0124930:CDS |
| CACAAATAAACATTGAAAAC+TGG | 0.373736 | 1_3:-52788271 | None:intergenic |
| ACAGCACGAGGGCGTGGAAT+TGG | 0.374576 | 1_3:-52786943 | None:intergenic |
| ATGGCACAGAGACAACTTTA+TGG | 0.375380 | 1_3:-52786483 | None:intergenic |
| TCTTGCGTCCGGAGGAATAT+CGG | 0.385319 | 1_3:-52788027 | None:intergenic |
| CTTCTCTGGTTCTGCAGAAC+CGG | 0.386674 | 1_3:-52786731 | None:intergenic |
| AGCAGAAACAAGACTGGAAA+TGG | 0.386793 | 1_3:+52787921 | Msa0124930:CDS |
| ACAGAAAATGACTTAATGAT+TGG | 0.389455 | 1_3:+52787897 | Msa0124930:intron |
| TCCCCAAAGTCTTCAATAAC+AGG | 0.399542 | 1_3:-52786685 | None:intergenic |
| GTACCTGTTATTGAAGACTT+TGG | 0.416459 | 1_3:+52786682 | Msa0124930:CDS |
| ATGTGACATGATCTTAATCT+AGG | 0.417453 | 1_3:+52788163 | Msa0124930:three_prime_UTR |
| TTCCACTCTCCTACTTCTCC+TGG | 0.421371 | 1_3:+52785623 | Msa0124930:CDS |
| GCATCCGATTTGTCAGGACC+TGG | 0.425980 | 1_3:+52786844 | Msa0124930:CDS |
| TCTATATTGCCGTCCTTCTC+AGG | 0.427850 | 1_3:-52786889 | None:intergenic |
| AAAATTCGAAATTGAAATGC+TGG | 0.441202 | 1_3:+52785004 | Msa0124930:CDS |
| TCAGTATCTCCATCCTTCTC+TGG | 0.448833 | 1_3:-52786619 | None:intergenic |
| TCAGTATCTCCATCCTTCTC+TGG | 0.448833 | 1_3:-52786745 | None:intergenic |
| ATCAACTTTATCTTTAGACT+TGG | 0.466112 | 1_3:-52788063 | None:intergenic |
| AGTTTGACATCTGATTCCTC+TGG | 0.470171 | 1_3:+52786586 | Msa0124930:CDS |
| GTACCTGTCACTGAAGACTT+TGG | 0.473223 | 1_3:+52786808 | Msa0124930:CDS |
| CAGAAAATGACTTAATGATT+GGG | 0.477294 | 1_3:+52787898 | Msa0124930:intron |
| CTGATAATTTACATAGGCAC+TGG | 0.480813 | 1_3:+52788126 | Msa0124930:CDS |
| TCCCCAAAGTCTTCAGTGAC+AGG | 0.504033 | 1_3:-52786811 | None:intergenic |
| ATCTTTAGACTTGGGCTCTG+TGG | 0.509252 | 1_3:-52788054 | None:intergenic |
| CATCCGATTTGTCAGGACCT+GGG | 0.510606 | 1_3:+52786845 | Msa0124930:CDS |
| GGTTTGGCATCCGATTTGTC+AGG | 0.511838 | 1_3:+52786838 | Msa0124930:CDS |
| GATATGACAGCACGAGGGCG+TGG | 0.515028 | 1_3:-52786949 | None:intergenic |
| GGTTTGACATCCAATTCCTC+CGG | 0.524831 | 1_3:+52786712 | Msa0124930:CDS |
| AGGTACTCGTGGAATCAAAT+CGG | 0.525694 | 1_3:-52786665 | None:intergenic |
| TCAACTTTATCTTTAGACTT+GGG | 0.525773 | 1_3:-52788062 | None:intergenic |
| ATCCGATTTGTCAGGACCTG+GGG | 0.530457 | 1_3:+52786846 | Msa0124930:CDS |
| ACTGCAGTCGACAAAATCTT+CGG | 0.536162 | 1_3:-52786566 | None:intergenic |
| CATGATCTTAATCTAGGACT+AGG | 0.540490 | 1_3:+52788169 | Msa0124930:three_prime_UTR |
| CGTGCTGTCATATCTAGTCC+TGG | 0.542686 | 1_3:+52786958 | Msa0124930:CDS |
| TGGTTCTGCAGAACCAGAGA+AGG | 0.544655 | 1_3:+52786606 | Msa0124930:CDS |
| AAAGATAAAGTTGATCATGT+AGG | 0.545329 | 1_3:+52788071 | Msa0124930:CDS |
| ACTTGTGGCAAGTAACACTT+TGG | 0.547468 | 1_3:-52786520 | None:intergenic |
| GGTGGTGATGTAAGAGACCT+TGG | 0.548065 | 1_3:+52785575 | Msa0124930:CDS |
| CGGTTCTGCAGAACCAGAGA+AGG | 0.550317 | 1_3:+52786732 | Msa0124930:CDS |
| AGGAAGATATATAATGCCTC+AGG | 0.557283 | 1_3:-52788326 | None:intergenic |
| CTCTGGTTCTGCAGAACCAG+AGG | 0.560999 | 1_3:-52786602 | None:intergenic |
| ACATGAGAAAGATGAATACA+AGG | 0.564963 | 1_3:+52785553 | Msa0124930:CDS |
| ACCTGTTATTGAAGACTTTG+GGG | 0.566193 | 1_3:+52786684 | Msa0124930:CDS |
| CTCTGGTTCTGCAGAACCGG+AGG | 0.570758 | 1_3:-52786728 | None:intergenic |
| ATTGGGAGCAGAAACAAGAC+TGG | 0.572746 | 1_3:+52787915 | Msa0124930:CDS |
| GTTATTGAAGACTTTGGGGA+AGG | 0.576122 | 1_3:+52786688 | Msa0124930:CDS |
| AAGTATTAAGCACGTCGTCA+TGG | 0.577628 | 1_3:-52788243 | None:intergenic |
| TACCAGGAGAAGTAGGAGAG+TGG | 0.585645 | 1_3:-52785625 | None:intergenic |
| ACCTGTCACTGAAGACTTTG+GGG | 0.594909 | 1_3:+52786810 | Msa0124930:CDS |
| TAAAATCTGATAATTTACAT+AGG | 0.595012 | 1_3:+52788120 | Msa0124930:CDS |
| GAAGGATCATGGACCTGAGA+AGG | 0.596092 | 1_3:+52786876 | Msa0124930:CDS |
| TCTTCAATAACAGGTACTCG+TGG | 0.602537 | 1_3:-52786676 | None:intergenic |
| TGACACTACCGATATTCCTC+CGG | 0.603823 | 1_3:+52788019 | Msa0124930:CDS |
| AGAGAAAAGCTTTCAAACCA+AGG | 0.604343 | 1_3:-52785592 | None:intergenic |
| ATTGAAGACTTTGGGGAAGG+CGG | 0.604745 | 1_3:+52786691 | Msa0124930:CDS |
| TCTGCAGAACCAGAGAAGGA+TGG | 0.614650 | 1_3:+52786610 | Msa0124930:CDS |
| TCTGCAGAACCAGAGAAGGA+TGG | 0.614650 | 1_3:+52786736 | Msa0124930:CDS |
| AGATTAAGATCATGTCACAT+TGG | 0.629085 | 1_3:-52788160 | None:intergenic |
| TCTTCGGTTACAGATACTCG+TGG | 0.630012 | 1_3:-52786550 | None:intergenic |
| AAACAGTCACAACATATACA+AGG | 0.634574 | 1_3:+52785042 | Msa0124930:CDS |
| ACTGAAGACTTTGGGGACGG+CGG | 0.636584 | 1_3:+52786817 | Msa0124930:CDS |
| AAATCTTAAGCAAAAGAGAG+AGG | 0.638186 | 1_3:-52788346 | None:intergenic |
| TCTTCAGTGACAGGTACTCG+TGG | 0.639277 | 1_3:-52786802 | None:intergenic |
| GATCATGGACCTGAGAAGGA+CGG | 0.642589 | 1_3:+52786880 | Msa0124930:CDS |
| ACTCGTGGAATTGATACTTG+TGG | 0.645193 | 1_3:-52786535 | None:intergenic |
| TGTAAGATTATTAAGCAACA+AGG | 0.649360 | 1_3:+52788298 | Msa0124930:three_prime_UTR |
| GTCACTGAAGACTTTGGGGA+CGG | 0.652392 | 1_3:+52786814 | Msa0124930:CDS |
| CATGAGAAAGATGAATACAA+GGG | 0.653599 | 1_3:+52785554 | Msa0124930:CDS |
| TCCGATTTGTCAGGACCTGG+GGG | 0.661422 | 1_3:+52786847 | Msa0124930:CDS |
| GGACTAGATATGACAGCACG+AGG | 0.661674 | 1_3:-52786955 | None:intergenic |
| AAGCAACAAGGCATTGCCTG+AGG | 0.670667 | 1_3:+52788310 | Msa0124930:three_prime_UTR |
| GAGAAAGATGAATACAAGGG+TGG | 0.696625 | 1_3:+52785557 | Msa0124930:CDS |
| GACTAGATATGACAGCACGA+GGG | 0.734110 | 1_3:-52786954 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTATTAAAAAAAATA+GGG | - | chr1_3:52785665-52785684 | None:intergenic | 0.0% |
| !! | GATGAAAATAAAAATAAAAA+AGG | - | chr1_3:52786413-52786432 | None:intergenic | 10.0% |
| !! | TTAAGTAATATTATATTGTT+AGG | + | chr1_3:52787463-52787482 | Msa0124930:intron | 10.0% |
| !!! | AAATAATAAAATGATGATGA+TGG | - | chr1_3:52785318-52785337 | None:intergenic | 15.0% |
| !!! | TCAATTTTTTTGTTTTGATT+TGG | + | chr1_3:52785684-52785703 | Msa0124930:intron | 15.0% |
| !! | TTATAGAAATAAGTTACTTA+TGG | + | chr1_3:52785903-52785922 | Msa0124930:intron | 15.0% |
| !! | AATTATTTGAACCAAAAATT+AGG | + | chr1_3:52786354-52786373 | Msa0124930:intron | 15.0% |
| !!! | AAAATTGAAACAAAATTTTG+AGG | - | chr1_3:52787873-52787892 | None:intergenic | 15.0% |
| !! | TAAAATCTGATAATTTACAT+AGG | + | chr1_3:52788120-52788139 | Msa0124930:CDS | 15.0% |
| !! | TTTGTTTCAAAAACATGATA+AGG | + | chr1_3:52785707-52785726 | Msa0124930:intron | 20.0% |
| !! | AAAAATTTGAGCTTCAAATA+AGG | - | chr1_3:52786209-52786228 | None:intergenic | 20.0% |
| !! | ATAAAATTGCAAAAAGTAAC+TGG | - | chr1_3:52787041-52787060 | None:intergenic | 20.0% |
| !!! | TATCATAGATAACAATGTTT+TGG | + | chr1_3:52787122-52787141 | Msa0124930:intron | 20.0% |
| !!! | ATCATAGATAACAATGTTTT+GGG | + | chr1_3:52787123-52787142 | Msa0124930:intron | 20.0% |
| !! | AATATTTGTGTATGTTCTAA+AGG | - | chr1_3:52787199-52787218 | None:intergenic | 20.0% |
| !!! | GTACTGAAAAGAATATTTTA+GGG | + | chr1_3:52787398-52787417 | Msa0124930:intron | 20.0% |
| ! | AAAATTCGAAATTGAAATGC+TGG | + | chr1_3:52785004-52785023 | Msa0124930:CDS | 25.0% |
| ! | ATTAAAAACGAAGTAAACGT+GGG | + | chr1_3:52785144-52785163 | Msa0124930:intron | 25.0% |
| ! | AAATCATGTTTCATCAAAAG+TGG | - | chr1_3:52785476-52785495 | None:intergenic | 25.0% |
| !!! | CATGATTTGATTGTTTTGTT+TGG | + | chr1_3:52785488-52785507 | Msa0124930:intron | 25.0% |
| !!! | TTATTTTTCAGTGTATCCAA+AGG | + | chr1_3:52785514-52785533 | Msa0124930:intron | 25.0% |
| ! | GGAAAATTAGAAAAATTACC+AGG | - | chr1_3:52785644-52785663 | None:intergenic | 25.0% |
| ! | AAATAAGTTACTTATGGACA+TGG | + | chr1_3:52785909-52785928 | Msa0124930:intron | 25.0% |
| !!! | TCAACTAAGCTATTTTAAAC+AGG | + | chr1_3:52785994-52786013 | Msa0124930:intron | 25.0% |
| !! | ATTGTCTAATTTTGCAGTAA+AGG | + | chr1_3:52786459-52786478 | Msa0124930:intron | 25.0% |
| ! | ATAAAGCATAACTGTTCTTA+TGG | - | chr1_3:52787103-52787122 | None:intergenic | 25.0% |
| ! | AAGGTAAACAAAACTCATAA+TGG | + | chr1_3:52787313-52787332 | Msa0124930:intron | 25.0% |
| !!! | GGTACTGAAAAGAATATTTT+AGG | + | chr1_3:52787397-52787416 | Msa0124930:intron | 25.0% |
| !! | AGGTTTATTATGTAGCTTTT+CGG | + | chr1_3:52787841-52787860 | Msa0124930:intron | 25.0% |
| ! | ACAGAAAATGACTTAATGAT+TGG | + | chr1_3:52787897-52787916 | Msa0124930:intron | 25.0% |
| ! | CAGAAAATGACTTAATGATT+GGG | + | chr1_3:52787898-52787917 | Msa0124930:intron | 25.0% |
| ! | TCAACTTTATCTTTAGACTT+GGG | - | chr1_3:52788065-52788084 | None:intergenic | 25.0% |
| ! | ATCAACTTTATCTTTAGACT+TGG | - | chr1_3:52788066-52788085 | None:intergenic | 25.0% |
| !! | AAAGATAAAGTTGATCATGT+AGG | + | chr1_3:52788071-52788090 | Msa0124930:CDS | 25.0% |
| ! | CACAAATAAACATTGAAAAC+TGG | - | chr1_3:52788274-52788293 | None:intergenic | 25.0% |
| ! | TGTAAGATTATTAAGCAACA+AGG | + | chr1_3:52788298-52788317 | Msa0124930:three_prime_UTR | 25.0% |
| AAACAGTCACAACATATACA+AGG | + | chr1_3:52785042-52785061 | Msa0124930:CDS | 30.0% | |
| ACAAGGAAAAAAGAGAGAAA+AGG | + | chr1_3:52785059-52785078 | Msa0124930:CDS | 30.0% | |
| TGAAATAGATGAACAGTGAA+AGG | - | chr1_3:52785089-52785108 | None:intergenic | 30.0% | |
| CATTAAAAACGAAGTAAACG+TGG | + | chr1_3:52785143-52785162 | Msa0124930:intron | 30.0% | |
| TTAAAAACGAAGTAAACGTG+GGG | + | chr1_3:52785145-52785164 | Msa0124930:intron | 30.0% | |
| AAGGCATGAACATAACATAA+TGG | + | chr1_3:52785228-52785247 | Msa0124930:intron | 30.0% | |
| CTGAGAAAGAAGGAAAAAAA+GGG | - | chr1_3:52785373-52785392 | None:intergenic | 30.0% | |
| TCTGAGAAAGAAGGAAAAAA+AGG | - | chr1_3:52785374-52785393 | None:intergenic | 30.0% | |
| TCTTGTCTTAATTTCACCTT+TGG | - | chr1_3:52785533-52785552 | None:intergenic | 30.0% | |
| ACATGAGAAAGATGAATACA+AGG | + | chr1_3:52785553-52785572 | Msa0124930:CDS | 30.0% | |
| CATGAGAAAGATGAATACAA+GGG | + | chr1_3:52785554-52785573 | Msa0124930:CDS | 30.0% | |
| !!! | TCAATCGTTTTTTACACTGA+CGG | - | chr1_3:52785749-52785768 | None:intergenic | 30.0% |
| CTGTTATTCATAAGCTATCA+TGG | + | chr1_3:52785875-52785894 | Msa0124930:intron | 30.0% | |
| ATTGACATTGAATCTTGAGA+GGG | + | chr1_3:52786165-52786184 | Msa0124930:intron | 30.0% | |
| ATGAAGTCGATAATATGCAT+AGG | + | chr1_3:52786233-52786252 | Msa0124930:intron | 30.0% | |
| !! | ATAGGCTTTCTACTTTTATG+TGG | + | chr1_3:52786251-52786270 | Msa0124930:intron | 30.0% |
| ATGTTAGTTACTTGAAAAGC+AGG | + | chr1_3:52786329-52786348 | Msa0124930:intron | 30.0% | |
| ! | GATATTACGGTCCTAATTTT+TGG | - | chr1_3:52786368-52786387 | None:intergenic | 30.0% |
| ! | ATGACTGGTTCATGATATTA+CGG | - | chr1_3:52786381-52786400 | None:intergenic | 30.0% |
| TTTGGTACTTTGACAATAGA+TGG | - | chr1_3:52786505-52786524 | None:intergenic | 30.0% | |
| TACCTGTTATTGAAGACTTT+GGG | + | chr1_3:52786683-52786702 | Msa0124930:CDS | 30.0% | |
| ATAGCTAAACAGAAAACTGA+TGG | - | chr1_3:52786997-52787016 | None:intergenic | 30.0% | |
| ATTGTCTGAGCTATAACTAA+AGG | + | chr1_3:52787059-52787078 | Msa0124930:intron | 30.0% | |
| TTACCAACATCTATATCTCT+TGG | - | chr1_3:52787172-52787191 | None:intergenic | 30.0% | |
| ! | AAAGTACTTCAAATTTGCTC+TGG | - | chr1_3:52787292-52787311 | None:intergenic | 30.0% |
| ! | GCAAATTTGAAGTACTTTGA+AGG | + | chr1_3:52787294-52787313 | Msa0124930:intron | 30.0% |
| !!! | AAACTTGAATTTTTAGCCTG+TGG | + | chr1_3:52787422-52787441 | Msa0124930:intron | 30.0% |
| TATGCATTAAGTGAGAATAC+AGG | + | chr1_3:52787577-52787596 | Msa0124930:intron | 30.0% | |
| ATGCATTAAGTGAGAATACA+GGG | + | chr1_3:52787578-52787597 | Msa0124930:intron | 30.0% | |
| ATCTCTATAGCAAATAAGCA+AGG | + | chr1_3:52787610-52787629 | Msa0124930:intron | 30.0% | |
| !! | TAATTTTCACTTCTAGCTGA+TGG | + | chr1_3:52787677-52787696 | Msa0124930:intron | 30.0% |
| AGAATTCAATTCGTTGTTTG+TGG | + | chr1_3:52787705-52787724 | Msa0124930:intron | 30.0% | |
| ACTAGAATCAGCATAATTGA+TGG | - | chr1_3:52787787-52787806 | None:intergenic | 30.0% | |
| ! | TCTACTTTCTGTGTTATTCA+AGG | + | chr1_3:52787821-52787840 | Msa0124930:intron | 30.0% |
| TGATCATGTAGGAAAGAAAA+AGG | + | chr1_3:52788082-52788101 | Msa0124930:CDS | 30.0% | |
| AGATTAAGATCATGTCACAT+TGG | - | chr1_3:52788163-52788182 | None:intergenic | 30.0% | |
| ATGTGACATGATCTTAATCT+AGG | + | chr1_3:52788163-52788182 | Msa0124930:three_prime_UTR | 30.0% | |
| AAATCTTAAGCAAAAGAGAG+AGG | - | chr1_3:52788349-52788368 | None:intergenic | 30.0% | |
| ! | TCTCTTTTGCTTAAGATTTC+AGG | + | chr1_3:52788350-52788369 | Msa0124930:three_prime_UTR | 30.0% |
| TAAACGTGGGGAAGTAAAAA+AGG | + | chr1_3:52785157-52785176 | Msa0124930:intron | 35.0% | |
| TGTGTTGTCTAAACTCAAGT+TGG | + | chr1_3:52785191-52785210 | Msa0124930:intron | 35.0% | |
| GTGTTGTCTAAACTCAAGTT+GGG | + | chr1_3:52785192-52785211 | Msa0124930:intron | 35.0% | |
| AGAGAAAAGCTTTCAAACCA+AGG | - | chr1_3:52785595-52785614 | None:intergenic | 35.0% | |
| GAAAAATTACCAGGAGAAGT+AGG | - | chr1_3:52785635-52785654 | None:intergenic | 35.0% | |
| TGTCGATAAACTCGTATGAA+TGG | + | chr1_3:52785941-52785960 | Msa0124930:intron | 35.0% | |
| TCTAGATCACTACAGCTTTA+TGG | - | chr1_3:52786020-52786039 | None:intergenic | 35.0% | |
| GATTGACATTGAATCTTGAG+AGG | + | chr1_3:52786164-52786183 | Msa0124930:intron | 35.0% | |
| ! | ACTCAGCTTGTTCTTCAATT+TGG | + | chr1_3:52786300-52786319 | Msa0124930:intron | 35.0% |
| AAAAGGAAATTCTGCATGAC+TGG | - | chr1_3:52786396-52786415 | None:intergenic | 35.0% | |
| AGCGACTCTATATCAGTAAA+TGG | - | chr1_3:52786439-52786458 | None:intergenic | 35.0% | |
| GTACCTGTTATTGAAGACTT+TGG | + | chr1_3:52786682-52786701 | Msa0124930:CDS | 35.0% | |
| ACCTGTTATTGAAGACTTTG+GGG | + | chr1_3:52786684-52786703 | Msa0124930:CDS | 35.0% | |
| ! | ACTAAAGGTTGACTTAGAGA+TGG | + | chr1_3:52787074-52787093 | Msa0124930:intron | 35.0% |
| CTATATCTCTTGGCTTCAAT+GGG | - | chr1_3:52787162-52787181 | None:intergenic | 35.0% | |
| TCTATATCTCTTGGCTTCAA+TGG | - | chr1_3:52787163-52787182 | None:intergenic | 35.0% | |
| AAGCCAAGAGATATAGATGT+TGG | + | chr1_3:52787166-52787185 | Msa0124930:intron | 35.0% | |
| !! | CATAATGGAAGCACTTCATA+TGG | + | chr1_3:52787328-52787347 | Msa0124930:intron | 35.0% |
| AGTGACATGAAAAGAAACCT+TGG | + | chr1_3:52787374-52787393 | Msa0124930:intron | 35.0% | |
| GTGACATGAAAAGAAACCTT+GGG | + | chr1_3:52787375-52787394 | Msa0124930:intron | 35.0% | |
| TGACATGAAAAGAAACCTTG+GGG | + | chr1_3:52787376-52787395 | Msa0124930:intron | 35.0% | |
| ! | ATATTCTTTTCAGTACCCCA+AGG | - | chr1_3:52787394-52787413 | None:intergenic | 35.0% |
| ! | TATTGTTAGGAGACTGCTTT+TGG | + | chr1_3:52787476-52787495 | Msa0124930:intron | 35.0% |
| TCTCACTTAATGCATACCAT+AGG | - | chr1_3:52787573-52787592 | None:intergenic | 35.0% | |
| GTTTGTGGTTGTAAAGAGAA+TGG | + | chr1_3:52787720-52787739 | Msa0124930:intron | 35.0% | |
| GAGAATGGAATGCTTTAACA+TGG | + | chr1_3:52787735-52787754 | Msa0124930:intron | 35.0% | |
| GGAAAGAAAAAGGTTCACAA+AGG | + | chr1_3:52788092-52788111 | Msa0124930:CDS | 35.0% | |
| CTGATAATTTACATAGGCAC+TGG | + | chr1_3:52788126-52788145 | Msa0124930:CDS | 35.0% | |
| ! | CATGATCTTAATCTAGGACT+AGG | + | chr1_3:52788169-52788188 | Msa0124930:three_prime_UTR | 35.0% |
| TAGGTTCCATCTCAAGAAAA+AGG | + | chr1_3:52788188-52788207 | Msa0124930:three_prime_UTR | 35.0% | |
| AGGTTCCATCTCAAGAAAAA+GGG | + | chr1_3:52788189-52788208 | Msa0124930:three_prime_UTR | 35.0% | |
| ! | TCTTTCCCTTTTTCTTGAGA+TGG | - | chr1_3:52788197-52788216 | None:intergenic | 35.0% |
| AGGAAGATATATAATGCCTC+AGG | - | chr1_3:52788329-52788348 | None:intergenic | 35.0% | |
| !! | TTGTCTAAACTCAAGTTGGG+TGG | + | chr1_3:52785195-52785214 | Msa0124930:intron | 40.0% |
| CATAACATAATGGCGTGTGA+AGG | + | chr1_3:52785238-52785257 | Msa0124930:intron | 40.0% | |
| !! | GATGATGATGGTGTTGTGTT+GGG | - | chr1_3:52785306-52785325 | None:intergenic | 40.0% |
| !! | TGATGATGATGGTGTTGTGT+TGG | - | chr1_3:52785307-52785326 | None:intergenic | 40.0% |
| ! | CTTCTGACTTCTGAGAAAGA+AGG | - | chr1_3:52785383-52785402 | None:intergenic | 40.0% |
| GAGAAAGATGAATACAAGGG+TGG | + | chr1_3:52785557-52785576 | Msa0124930:CDS | 40.0% | |
| ! | TGTAGTGATCTAGAGTGCTT+TGG | + | chr1_3:52786026-52786045 | Msa0124930:intron | 40.0% |
| ! | GTAGTGATCTAGAGTGCTTT+GGG | + | chr1_3:52786027-52786046 | Msa0124930:intron | 40.0% |
| ! | TAGTGATCTAGAGTGCTTTG+GGG | + | chr1_3:52786028-52786047 | Msa0124930:intron | 40.0% |
| AACTGTCAAGTATGTGTGTG+GGG | - | chr1_3:52786084-52786103 | None:intergenic | 40.0% | |
| GAACTGTCAAGTATGTGTGT+GGG | - | chr1_3:52786085-52786104 | None:intergenic | 40.0% | |
| AGAACTGTCAAGTATGTGTG+TGG | - | chr1_3:52786086-52786105 | None:intergenic | 40.0% | |
| ACATTGAATCTTGAGAGGGT+GGG | + | chr1_3:52786169-52786188 | Msa0124930:intron | 40.0% | |
| ATGGCACAGAGACAACTTTA+TGG | - | chr1_3:52786486-52786505 | None:intergenic | 40.0% | |
| ACTTGTGGCAAGTAACACTT+TGG | - | chr1_3:52786523-52786542 | None:intergenic | 40.0% | |
| ACTCGTGGAATTGATACTTG+TGG | - | chr1_3:52786538-52786557 | None:intergenic | 40.0% | |
| ACTGCAGTCGACAAAATCTT+CGG | - | chr1_3:52786569-52786588 | None:intergenic | 40.0% | |
| AGTTTGACATCTGATTCCTC+TGG | + | chr1_3:52786586-52786605 | Msa0124930:CDS | 40.0% | |
| AGGTACTCGTGGAATCAAAT+CGG | - | chr1_3:52786668-52786687 | None:intergenic | 40.0% | |
| TCTTCAATAACAGGTACTCG+TGG | - | chr1_3:52786679-52786698 | None:intergenic | 40.0% | |
| TCCCCAAAGTCTTCAATAAC+AGG | - | chr1_3:52786688-52786707 | None:intergenic | 40.0% | |
| ! | GTTATTGAAGACTTTGGGGA+AGG | + | chr1_3:52786688-52786707 | Msa0124930:CDS | 40.0% |
| TACCTGTCACTGAAGACTTT+GGG | + | chr1_3:52786809-52786828 | Msa0124930:CDS | 40.0% | |
| GATGGAGTATGAGATTTACC+AGG | - | chr1_3:52786979-52786998 | None:intergenic | 40.0% | |
| AGAGTTGCATTGCATCATTC+TGG | - | chr1_3:52787245-52787264 | None:intergenic | 40.0% | |
| !!! | GAATTTTTAGCCTGTGGTTG+TGG | + | chr1_3:52787428-52787447 | Msa0124930:intron | 40.0% |
| TTAATGCATACCATAGGCTC+TGG | - | chr1_3:52787567-52787586 | None:intergenic | 40.0% | |
| CAGAAAGTAGATGCAAAGTG+AGG | - | chr1_3:52787812-52787831 | None:intergenic | 40.0% | |
| AGCAGAAACAAGACTGGAAA+TGG | + | chr1_3:52787921-52787940 | Msa0124930:CDS | 40.0% | |
| ! | TGAGCAAGAGCATGTCTATT+TGG | - | chr1_3:52787981-52788000 | None:intergenic | 40.0% |
| AAGTATTAAGCACGTCGTCA+TGG | - | chr1_3:52788246-52788265 | None:intergenic | 40.0% | |
| ! | AGTGATCTAGAGTGCTTTGG+GGG | + | chr1_3:52786029-52786048 | Msa0124930:intron | 45.0% |
| !!! | GGGGTATTGGTAGAACCTTT+TGG | + | chr1_3:52786048-52786067 | Msa0124930:intron | 45.0% |
| ACTGTCAAGTATGTGTGTGG+GGG | - | chr1_3:52786083-52786102 | None:intergenic | 45.0% | |
| AGAGAGAACGACGATGATGT+AGG | - | chr1_3:52786132-52786151 | None:intergenic | 45.0% | |
| GACATTGAATCTTGAGAGGG+TGG | + | chr1_3:52786168-52786187 | Msa0124930:intron | 45.0% | |
| TCTTCGGTTACAGATACTCG+TGG | - | chr1_3:52786553-52786572 | None:intergenic | 45.0% | |
| TCAGTATCTCCATCCTTCTC+TGG | - | chr1_3:52786622-52786641 | None:intergenic | 45.0% | |
| ! | ATTGAAGACTTTGGGGAAGG+CGG | + | chr1_3:52786691-52786710 | Msa0124930:CDS | 45.0% |
| GGTTTGACATCCAATTCCTC+CGG | + | chr1_3:52786712-52786731 | Msa0124930:CDS | 45.0% | |
| TCAGTATCTCCATCCTTCTC+TGG | - | chr1_3:52786622-52786641 | None:intergenic | 45.0% | |
| GTACCTGTCACTGAAGACTT+TGG | + | chr1_3:52786808-52786827 | Msa0124930:CDS | 45.0% | |
| ACCTGTCACTGAAGACTTTG+GGG | + | chr1_3:52786810-52786829 | Msa0124930:CDS | 45.0% | |
| TCTATATTGCCGTCCTTCTC+AGG | - | chr1_3:52786892-52786911 | None:intergenic | 45.0% | |
| GACTAGATATGACAGCACGA+GGG | - | chr1_3:52786957-52786976 | None:intergenic | 45.0% | |
| GATGTAAATGCCACAACCAC+AGG | - | chr1_3:52787441-52787460 | None:intergenic | 45.0% | |
| ! | TCATTTTGCTCCAGAGCCTA+TGG | + | chr1_3:52787554-52787573 | Msa0124930:intron | 45.0% |
| ATTGGGAGCAGAAACAAGAC+TGG | + | chr1_3:52787915-52787934 | Msa0124930:CDS | 45.0% | |
| TGACACTACCGATATTCCTC+CGG | + | chr1_3:52788019-52788038 | Msa0124930:CDS | 45.0% | |
| ! | TCTGTGGATTTTCTTGCGTC+CGG | - | chr1_3:52788041-52788060 | None:intergenic | 45.0% |
| ATCTTTAGACTTGGGCTCTG+TGG | - | chr1_3:52788057-52788076 | None:intergenic | 45.0% | |
| !!! | GAATTTTTATTAAAAAAAAT+AGG | - | chr1_3:52785666-52785685 | None:intergenic | 5.0% |
| !! | AAACTCAAGTTGGGTGGCGT+TGG | + | chr1_3:52785201-52785220 | Msa0124930:intron | 50.0% |
| ! | GGTGGTGATGTAAGAGACCT+TGG | + | chr1_3:52785575-52785594 | Msa0124930:CDS | 50.0% |
| TTCCACTCTCCTACTTCTCC+TGG | + | chr1_3:52785623-52785642 | Msa0124930:CDS | 50.0% | |
| TACCAGGAGAAGTAGGAGAG+TGG | - | chr1_3:52785628-52785647 | None:intergenic | 50.0% | |
| !! | CTAGAGTGCTTTGGGGGTAT+TGG | + | chr1_3:52786035-52786054 | Msa0124930:intron | 50.0% |
| CAAGTATGTGTGTGGGGGAT+GGG | - | chr1_3:52786078-52786097 | None:intergenic | 50.0% | |
| TCAAGTATGTGTGTGGGGGA+TGG | - | chr1_3:52786079-52786098 | None:intergenic | 50.0% | |
| TTGAATCTTGAGAGGGTGGG+TGG | + | chr1_3:52786172-52786191 | Msa0124930:intron | 50.0% | |
| ! | TGGTTCTGCAGAACCAGAGA+AGG | + | chr1_3:52786606-52786625 | Msa0124930:CDS | 50.0% |
| TCTGCAGAACCAGAGAAGGA+TGG | + | chr1_3:52786610-52786629 | Msa0124930:CDS | 50.0% | |
| TTCTGCAGAACCGGAGGAAT+TGG | - | chr1_3:52786725-52786744 | None:intergenic | 50.0% | |
| !! | CTTCTCTGGTTCTGCAGAAC+CGG | - | chr1_3:52786608-52786627 | None:intergenic | 50.0% |
| TCTGCAGAACCAGAGAAGGA+TGG | + | chr1_3:52786610-52786629 | Msa0124930:CDS | 50.0% | |
| TCTTCAGTGACAGGTACTCG+TGG | - | chr1_3:52786805-52786824 | None:intergenic | 50.0% | |
| TCCCCAAAGTCTTCAGTGAC+AGG | - | chr1_3:52786814-52786833 | None:intergenic | 50.0% | |
| ! | GTCACTGAAGACTTTGGGGA+CGG | + | chr1_3:52786814-52786833 | Msa0124930:CDS | 50.0% |
| ! | GGTTTGGCATCCGATTTGTC+AGG | + | chr1_3:52786838-52786857 | Msa0124930:CDS | 50.0% |
| ! | CATCCGATTTGTCAGGACCT+GGG | + | chr1_3:52786845-52786864 | Msa0124930:CDS | 50.0% |
| ! | ATCCGATTTGTCAGGACCTG+GGG | + | chr1_3:52786846-52786865 | Msa0124930:CDS | 50.0% |
| GAAGGATCATGGACCTGAGA+AGG | + | chr1_3:52786876-52786895 | Msa0124930:CDS | 50.0% | |
| GATCATGGACCTGAGAAGGA+CGG | + | chr1_3:52786880-52786899 | Msa0124930:CDS | 50.0% | |
| GGACTAGATATGACAGCACG+AGG | - | chr1_3:52786958-52786977 | None:intergenic | 50.0% | |
| CGTGCTGTCATATCTAGTCC+TGG | + | chr1_3:52786958-52786977 | Msa0124930:CDS | 50.0% | |
| TCTTGCGTCCGGAGGAATAT+CGG | - | chr1_3:52788030-52788049 | None:intergenic | 50.0% | |
| !! | AAGCAACAAGGCATTGCCTG+AGG | + | chr1_3:52788310-52788329 | Msa0124930:three_prime_UTR | 50.0% |
| !! | GTTGGGTGGCGTTGGTCAAA+AGG | + | chr1_3:52785209-52785228 | Msa0124930:intron | 55.0% |
| ! | ATAATGGCGTGTGAAGGCGC+AGG | + | chr1_3:52785244-52785263 | Msa0124930:intron | 55.0% |
| TGGGGGATGGGAGAACCAAA+AGG | - | chr1_3:52786066-52786085 | None:intergenic | 55.0% | |
| AGAGGGTGGGTGGTAACTGT+TGG | + | chr1_3:52786182-52786201 | Msa0124930:intron | 55.0% | |
| !! | CTCTGGTTCTGCAGAACCAG+AGG | - | chr1_3:52786603-52786622 | None:intergenic | 55.0% |
| CGGTTCTGCAGAACCAGAGA+AGG | + | chr1_3:52786732-52786751 | Msa0124930:CDS | 55.0% | |
| ! | ACTGAAGACTTTGGGGACGG+CGG | + | chr1_3:52786817-52786836 | Msa0124930:CDS | 55.0% |
| ! | GCATCCGATTTGTCAGGACC+TGG | + | chr1_3:52786844-52786863 | Msa0124930:CDS | 55.0% |
| ! | TCCGATTTGTCAGGACCTGG+GGG | + | chr1_3:52786847-52786866 | Msa0124930:CDS | 55.0% |
| TCCCCCAGGTCCTGACAAAT+CGG | - | chr1_3:52786851-52786870 | None:intergenic | 55.0% | |
| TGATCCTTCTCTAGTCCCCC+AGG | - | chr1_3:52786865-52786884 | None:intergenic | 55.0% | |
| GGGGGACTAGAGAAGGATCA+TGG | + | chr1_3:52786865-52786884 | Msa0124930:CDS | 55.0% | |
| ! | GTGGATTTTCTTGCGTCCGG+AGG | - | chr1_3:52788038-52788057 | None:intergenic | 55.0% |
| !! | CTCTGGTTCTGCAGAACCGG+AGG | - | chr1_3:52786731-52786750 | None:intergenic | 60.0% |
| ! | AGACTTTGGGGACGGCGGTT+TGG | + | chr1_3:52786822-52786841 | Msa0124930:CDS | 60.0% |
| AGGACCTGGGGGACTAGAGA+AGG | + | chr1_3:52786858-52786877 | Msa0124930:CDS | 60.0% | |
| ! | ACAGCACGAGGGCGTGGAAT+TGG | - | chr1_3:52786946-52786965 | None:intergenic | 60.0% |
| GATATGACAGCACGAGGGCG+TGG | - | chr1_3:52786952-52786971 | None:intergenic | 60.0% | |
| ! | GGCGTGTGAAGGCGCAGGAA+AGG | + | chr1_3:52785249-52785268 | Msa0124930:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 52784994 | 52788430 | 52784994 | ID=Msa0124930;Name=Msa0124930 |
| chr1_3 | mRNA | 52784994 | 52788430 | 52784994 | ID=Msa0124930-mRNA-1;Parent=Msa0124930;Name=Msa0124930-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|1|0.8|1|0.75|0.8|5|273|334 |
| chr1_3 | exon | 52784994 | 52785080 | 52784994 | ID=Msa0124930-mRNA-1:exon:16268;Parent=Msa0124930-mRNA-1 |
| chr1_3 | exon | 52785393 | 52785429 | 52785393 | ID=Msa0124930-mRNA-1:exon:16269;Parent=Msa0124930-mRNA-1 |
| chr1_3 | exon | 52785525 | 52785644 | 52785525 | ID=Msa0124930-mRNA-1:exon:16270;Parent=Msa0124930-mRNA-1 |
| chr1_3 | exon | 52786476 | 52786979 | 52786476 | ID=Msa0124930-mRNA-1:exon:16271;Parent=Msa0124930-mRNA-1 |
| chr1_3 | exon | 52787901 | 52788430 | 52787901 | ID=Msa0124930-mRNA-1:exon:16272;Parent=Msa0124930-mRNA-1 |
| chr1_3 | CDS | 52784994 | 52785080 | 52784994 | ID=Msa0124930-mRNA-1:cds;Parent=Msa0124930-mRNA-1 |
| chr1_3 | CDS | 52785393 | 52785429 | 52785393 | ID=Msa0124930-mRNA-1:cds;Parent=Msa0124930-mRNA-1 |
| chr1_3 | CDS | 52785525 | 52785644 | 52785525 | ID=Msa0124930-mRNA-1:cds;Parent=Msa0124930-mRNA-1 |
| chr1_3 | CDS | 52786476 | 52786979 | 52786476 | ID=Msa0124930-mRNA-1:cds;Parent=Msa0124930-mRNA-1 |
| chr1_3 | CDS | 52787901 | 52788157 | 52787901 | ID=Msa0124930-mRNA-1:cds;Parent=Msa0124930-mRNA-1 |
| chr1_3 | three_prime_UTR | 52788158 | 52788430 | 52788158 | ID=Msa0124930-mRNA-1:three_prime_utr;Parent=Msa0124930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
