AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0135200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0135200 MtrunA17_Chr1g0205221 93.750 544 12 2 1 522 1 544 0.0 1005
Msa0135200 MtrunA17_Chr3g0098661 29.878 492 263 10 98 510 6 494 7.04e-59 202
Msa0135200 MtrunA17_Chr1g0150001 32.530 415 238 9 133 516 74 477 5.04e-56 195
Msa0135200 MtrunA17_Chr3g0079271 28.741 421 267 6 119 512 109 523 3.45e-37 144
Msa0135200 MtrunA17_Chr2g0293351 26.526 426 271 6 121 514 33 448 1.42e-35 138
Msa0135200 MtrunA17_Chr2g0293371 25.341 367 232 6 180 514 2 358 3.32e-20 92.4
Msa0135200 MtrunA17_Chr1g0150041 25.564 266 155 6 99 360 29 255 1.13e-19 89.4
Msa0135200 MtrunA17_Chr1g0150031 25.843 178 111 1 366 522 3 180 2.17e-15 75.1
Msa0135200 MtrunA17_Chr2g0293361 26.484 219 139 2 318 514 35 253 8.14e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0135200 AT2G32040.1 70.810 531 121 5 25 522 31 560 0.0 669
Msa0135200 AT2G32040.2 79.953 429 63 2 117 522 1 429 0.0 627
Msa0135200 AT1G79710.2 30.588 425 256 10 114 510 52 465 6.96e-60 206
Msa0135200 AT1G79710.1 30.588 425 256 10 114 510 52 465 6.96e-60 206
Msa0135200 AT5G54860.1 28.602 465 258 6 115 505 20 484 5.07e-57 198
Msa0135200 AT5G25050.1 28.723 470 290 12 85 518 17 477 1.92e-54 191
Msa0135200 AT5G25040.4 29.138 429 259 9 127 522 63 479 4.83e-51 182
Msa0135200 AT5G25040.2 27.974 454 257 10 127 522 63 504 1.17e-47 173
Msa0135200 AT1G79710.3 29.494 356 214 9 114 441 52 398 7.11e-45 163
Msa0135200 AT5G25040.1 28.841 371 225 7 127 470 63 421 6.85e-43 159
Msa0135200 AT5G10820.1 27.294 436 263 11 122 516 69 491 4.48e-38 146
Msa0135200 AT5G25040.5 28.655 342 201 7 212 522 3 332 3.59e-32 127
Msa0135200 AT5G25040.3 27.439 328 199 7 127 427 63 378 2.36e-30 122
Msa0135200 AT1G64890.1 27.949 390 241 6 119 479 27 405 5.13e-30 122
Msa0135200 AT2G33280.1 27.494 451 283 12 105 522 77 516 4.60e-27 115
Msa0135200 AT1G04570.1 26.841 421 275 7 112 507 88 500 2.44e-26 113
Msa0135200 AT2G33280.3 26.988 415 260 11 140 522 5 408 4.26e-22 99.4
Msa0135200 AT1G04570.2 25.926 216 138 2 314 507 137 352 3.09e-15 78.2
Msa0135200 AT2G33280.2 26.608 342 211 10 210 522 4 334 9.73e-14 73.2

Find 158 sgRNAs with CRISPR-Local

Find 700 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTCAAAAGACTATTAT+TGG 0.146532 1_3:+66825756 None:intergenic
GACTAGGCAGCTGTGATTTC+TGG 0.171486 1_3:-66832397 Msa0135200:intron
CGACGATAGCGACTCATTAT+TGG 0.200510 1_3:-66833674 Msa0135200:CDS
ATCAAAATTCACTTTAAATC+TGG 0.207622 1_3:-66826002 Msa0135200:three_prime_UTR
TGCTGGGGTTCTTCAGCTTT+TGG 0.228174 1_3:-66831339 Msa0135200:CDS
GATCGGCGAGGTGTAGAAAT+TGG 0.232444 1_3:+66833801 None:intergenic
ATCTCTCTCTGTTGCTTTCT+CGG 0.232890 1_3:-66832072 Msa0135200:CDS
ACCTTCTCCGATAACCAAAA+AGG 0.249081 1_3:+66832195 None:intergenic
AGTCCTTACAAAGAAGTAAA+AGG 0.252498 1_3:+66825798 None:intergenic
TAATTATTTAAATTGAATTA+AGG 0.262870 1_3:+66833889 None:intergenic
TTACTGCCTCTACCACTTCT+TGG 0.266430 1_3:-66826292 Msa0135200:CDS
GGTGTAGAAATTGGGAAATT+TGG 0.267603 1_3:+66833810 None:intergenic
GCAGGCCTGACTCAAGTATT+TGG 0.283071 1_3:-66826376 Msa0135200:CDS
CTTGGTGTTGGACTTTATAA+TGG 0.284228 1_3:-66830748 Msa0135200:CDS
CTGTCTCAATGTTCTTAAAA+TGG 0.285635 1_3:+66825963 None:intergenic
ATTAGACTTCATCTCGATTT+CGG 0.303513 1_3:+66826225 None:intergenic
CACTTCTTGGTCTTCTCCCT+GGG 0.305804 1_3:-66826279 Msa0135200:CDS
TACAAAGCTCGTGGATGTTC+TGG 0.305856 1_3:+66825866 None:intergenic
TCTAATGGAGGGAGTGTTCT+TGG 0.307833 1_3:-66826412 Msa0135200:CDS
AACAGATATAGTACATTGTT+TGG 0.312139 1_3:-66833032 Msa0135200:CDS
CTACTTCAGCGGGTCTTTGT+TGG 0.335964 1_3:-66831301 Msa0135200:CDS
CCACTTCTTGGTCTTCTCCC+TGG 0.340018 1_3:-66826280 Msa0135200:CDS
ATCTCTTCAGTCCTTATGCT+GGG 0.350602 1_3:-66831355 Msa0135200:CDS
TGGCTTGTGAAACCTCTATA+TGG 0.351457 1_3:-66832358 Msa0135200:CDS
CTAATGGAGGGAGTGTTCTT+GGG 0.352512 1_3:-66826411 Msa0135200:CDS
GACGATAGCGACTCATTATT+GGG 0.363290 1_3:-66833673 Msa0135200:CDS
GGTGAGTCACAAAGCACTTC+GGG 0.376967 1_3:-66831378 Msa0135200:CDS
CAAGGACAAATTTGATAACT+TGG 0.380656 1_3:-66826347 Msa0135200:CDS
ACAGATATAGTACATTGTTT+GGG 0.381846 1_3:-66833031 Msa0135200:CDS
ACTGGACTAAACCGGAAGTT+TGG 0.383574 1_3:-66830542 Msa0135200:CDS
ACTCTCATGTCTGTATCTAA+TGG 0.383974 1_3:-66826427 Msa0135200:CDS
TCGATTTCGGAATCGTCCTT+TGG 0.387782 1_3:+66826238 None:intergenic
TCAAAATTCACTTTAAATCT+GGG 0.388741 1_3:-66826001 Msa0135200:three_prime_UTR
ATCGCAACAGCAACAGTATC+CGG 0.393229 1_3:+66832996 None:intergenic
CATCGCTTATTCCAAACTTC+CGG 0.395932 1_3:+66830531 None:intergenic
TTTAAAGGATGATTTGCATC+TGG 0.399641 1_3:-66832919 Msa0135200:CDS
CTTCTGTATCATCTAGTGTA+TGG 0.401404 1_3:-66825545 Msa0135200:three_prime_UTR
ACCTTCTCCTTGGTGGCTAC+TGG 0.404337 1_3:+66825899 None:intergenic
GTCTGCTTGGTGCACTCTCA+TGG 0.404435 1_3:-66832154 Msa0135200:CDS
TCGTCCTTTGGATTTGCATC+AGG 0.409697 1_3:+66826250 None:intergenic
GGTTGTAGATTCAATGGTTG+TGG 0.412195 1_3:-66831412 Msa0135200:CDS
ATACCGGACATTTCAGTTCC+CGG 0.417769 1_3:+66833733 None:intergenic
GATCTCTTCAGTCCTTATGC+TGG 0.418334 1_3:-66831356 Msa0135200:CDS
ACCTCGATTGCATCTCTGCT+TGG 0.422137 1_3:-66830766 Msa0135200:CDS
TTACAAAAGCTTGTATAAAC+AGG 0.426888 1_3:+66825707 None:intergenic
TCATTATTGGGTTCTAGAAC+TGG 0.427066 1_3:-66833661 Msa0135200:intron
TCACTTTAAATCTGGGTTTG+TGG 0.429136 1_3:-66825994 Msa0135200:three_prime_UTR
AGCGATGAGTGGTTTGCAAT+TGG 0.431214 1_3:-66830515 Msa0135200:CDS
CAAGTTATCAAATTTGTCCT+TGG 0.434615 1_3:+66826348 None:intergenic
CATTTCAGCACAAATTCTCT+TGG 0.437574 1_3:-66830826 Msa0135200:intron
ATTGCATCTCTGCTTGGTGT+TGG 0.442139 1_3:-66830760 Msa0135200:CDS
CTGGTATTTCTGCGTTTCCA+TGG 0.443683 1_3:-66832378 Msa0135200:CDS
TGATATTAGTTGTTCTCCAC+TGG 0.450158 1_3:-66826202 Msa0135200:three_prime_UTR
CTTGCTGCTAGCACAAGAAC+AGG 0.454091 1_3:+66826487 None:intergenic
GGGTCTTTGTTGGATGCATA+TGG 0.457699 1_3:-66831291 Msa0135200:CDS
GGAAATTTGGAGGGCAATAA+CGG 0.459031 1_3:+66833823 None:intergenic
AGATTCAATGGTTGTGGAAA+GGG 0.459319 1_3:-66831406 Msa0135200:CDS
TGTTGGATGCATATGGAGTA+AGG 0.460266 1_3:-66831284 Msa0135200:intron
AGCTGAAGAACCCCAGCATA+AGG 0.464178 1_3:+66831344 None:intergenic
CTCAGGCCTGGCAAATGAAA+AGG 0.475164 1_3:+66831069 None:intergenic
ATCGGCGAGGTGTAGAAATT+GGG 0.476127 1_3:+66833802 None:intergenic
CAGTGCTATACAATATGCTC+TGG 0.481138 1_3:-66825943 Msa0135200:three_prime_UTR
TTTGTGACAGGTGCAGGAAA+AGG 0.484679 1_3:-66833119 Msa0135200:intron
TAATTCCAAATACTTGAGTC+AGG 0.485447 1_3:+66826371 None:intergenic
TACTGGTTACTGGACTAAAC+CGG 0.488334 1_3:-66830550 Msa0135200:CDS
GTAGAAATTGGGAAATTTGG+AGG 0.495587 1_3:+66833813 None:intergenic
ATTAAAATCTATAATCGAGA+TGG 0.501287 1_3:+66826033 None:intergenic
CTCGTTCGCCGCAATACCGC+CGG 0.505966 1_3:-66833774 Msa0135200:CDS
TAAATTAAACAAAAGTGAAA+AGG 0.506643 1_3:+66825830 None:intergenic
TCGCAACAGCAACAGTATCC+GGG 0.512033 1_3:+66832997 None:intergenic
GACAGATACCTTCTCCTTGG+TGG 0.517160 1_3:+66825892 None:intergenic
TAATGGAGGGAGTGTTCTTG+GGG 0.517980 1_3:-66826410 Msa0135200:CDS
TAGAACAGCTTGGATAAGAA+AGG 0.519813 1_3:+66826164 None:intergenic
ATTTACCTAAAATAGACAAC+AGG 0.519872 1_3:-66825595 Msa0135200:three_prime_UTR
CCTCTTGCTGTACCAAGTGT+AGG 0.520059 1_3:+66831097 None:intergenic
CAAGCAGACCGGATAAAACT+AGG 0.524590 1_3:+66832168 None:intergenic
AGAAGACCAAGAAGTGGTAG+AGG 0.525079 1_3:+66826286 None:intergenic
ACAGAGTATCATTCAGCTGT+GGG 0.525230 1_3:-66831029 Msa0135200:CDS
AAGATTATGTCCCGAGGGGA+TGG 0.527273 1_3:-66826467 Msa0135200:CDS
CAACAAAGACCCGCTGAAGT+AGG 0.527539 1_3:+66831302 None:intergenic
GTTTGGGATTGATCTATCCC+CGG 0.528718 1_3:-66833015 Msa0135200:CDS
CCACAAGAAAATAAATAATG+TGG 0.530329 1_3:+66830976 None:intergenic
AGGGACAGATACCTTCTCCT+TGG 0.530773 1_3:+66825889 None:intergenic
TTTGCATCAGGATTGTCCCC+AGG 0.535541 1_3:+66826262 None:intergenic
TATAGAGGTTTCACAAGCCA+TGG 0.535812 1_3:+66832361 None:intergenic
GCGATGGTATACTTTGTTCA+AGG 0.536780 1_3:-66832978 Msa0135200:CDS
TTAAGAATGGATACCTCAGC+AGG 0.538127 1_3:+66832894 None:intergenic
AAGCAAAACTTAGAACAGCT+TGG 0.540142 1_3:+66826154 None:intergenic
GAGAACTCATCGGAATCCGC+CGG 0.542775 1_3:-66833752 Msa0135200:CDS
GCCAGTAGCCACCAAGGAGA+AGG 0.542893 1_3:-66825900 Msa0135200:three_prime_UTR
TTGTGAGCTCCTACTTCAGC+GGG 0.546600 1_3:-66831311 Msa0135200:CDS
GCGGATTCCGATGAGTTCTC+CGG 0.546638 1_3:+66833755 None:intergenic
CACCTAATAAAACCATATAG+AGG 0.547156 1_3:+66832346 None:intergenic
ATATTTGTTGTCAACAGAAG+TGG 0.547608 1_3:+66832121 None:intergenic
CGATGCTAAAGTTGCCGCCA+GGG 0.548051 1_3:-66826068 Msa0135200:three_prime_UTR
AGAGTTGCCTCCATCCCCTC+GGG 0.549319 1_3:+66826457 None:intergenic
TGTCGACCTCGGAATGATAC+CGG 0.551706 1_3:+66833717 None:intergenic
TAGATTCAATGGTTGTGGAA+AGG 0.551877 1_3:-66831407 Msa0135200:CDS
TGCGGCGAACGAGCGACGAT+CGG 0.555805 1_3:+66833784 None:intergenic
AAGAGTTGCCTCCATCCCCT+CGG 0.556034 1_3:+66826456 None:intergenic
CCGCCGGGAACTGAAATGTC+CGG 0.556427 1_3:-66833736 Msa0135200:CDS
TGGTGAGTCACAAAGCACTT+CGG 0.557058 1_3:-66831379 Msa0135200:CDS
AGAACTCATCGGAATCCGCC+GGG 0.559318 1_3:-66833751 Msa0135200:CDS
CGCTATCGTCGATGTTGAGT+CGG 0.561810 1_3:+66833686 None:intergenic
TTGCATCAGGATTGTCCCCA+GGG 0.566609 1_3:+66826263 None:intergenic
ACGATGCTAAAGTTGCCGCC+AGG 0.567540 1_3:-66826069 Msa0135200:three_prime_UTR
CTCATGTCTGTATCTAATGG+AGG 0.574248 1_3:-66826424 Msa0135200:CDS
TGCACTCTCATGGAGTCTGA+TGG 0.577488 1_3:-66832144 Msa0135200:CDS
CCTACACTTGGTACAGCAAG+AGG 0.578175 1_3:-66831097 Msa0135200:CDS
CACAAGAAAATAAATAATGT+GGG 0.584571 1_3:+66830977 None:intergenic
AACAGAGTATCATTCAGCTG+TGG 0.586939 1_3:-66831030 Msa0135200:CDS
CAACAAACTTACAAAGCTCG+TGG 0.587004 1_3:+66825857 None:intergenic
GTCGATGTTGAGTCGGAAAG+CGG 0.587421 1_3:+66833693 None:intergenic
GGAAGCCTCTAGATCTGTCT+CGG 0.588163 1_3:+66833082 None:intergenic
TCTCTTCAGTCCTTATGCTG+GGG 0.588582 1_3:-66831354 Msa0135200:CDS
TGAGAGTGCACCAAGCAGAC+CGG 0.590587 1_3:+66832157 None:intergenic
TAGAAATTGGGAAATTTGGA+GGG 0.590749 1_3:+66833814 None:intergenic
GATGGTTTACAACAAGGCCC+TGG 0.594725 1_3:+66826051 None:intergenic
AAAGCTCGTGGATGTTCTGG+AGG 0.602621 1_3:+66825869 None:intergenic
AAGAAAGGCAATCTCAAGGA+AGG 0.603309 1_3:+66826179 None:intergenic
GGATACTGTTGCTGTTGCGA+TGG 0.603826 1_3:-66832994 Msa0135200:CDS
ATTATGTCCCGAGGGGATGG+AGG 0.606500 1_3:-66826464 Msa0135200:CDS
GGATAAGAAAGGCAATCTCA+AGG 0.606521 1_3:+66826175 None:intergenic
TCATGTCTGTATCTAATGGA+GGG 0.612558 1_3:-66826423 Msa0135200:CDS
CGCAACAGCAACAGTATCCG+GGG 0.616699 1_3:+66832998 None:intergenic
GTAAAAGAACAACCTACACT+TGG 0.619642 1_3:-66831109 Msa0135200:CDS
TGAGTTCTCCGGCGGTATTG+CGG 0.621556 1_3:+66833766 None:intergenic
CGGAAAGCGGATGTCGACCT+CGG 0.623787 1_3:+66833706 None:intergenic
AGTTTGGAATAAGCGATGAG+TGG 0.627347 1_3:-66830526 Msa0135200:CDS
AGCAGCAAGATTATGTCCCG+AGG 0.628817 1_3:-66826473 Msa0135200:CDS
CAATCCTGATGCAAATCCAA+AGG 0.634709 1_3:-66826254 Msa0135200:CDS
ATTGTGAGCTCCTACTTCAG+CGG 0.634840 1_3:-66831312 Msa0135200:CDS
CCAGGGAGAAGACCAAGAAG+TGG 0.640736 1_3:+66826280 None:intergenic
AATCGAGATGGTTTACAACA+AGG 0.641661 1_3:+66826045 None:intergenic
TCAAGTATTTGGAATTACCA+AGG 0.643118 1_3:-66826365 Msa0135200:CDS
AATACCGCCGGAGAACTCAT+CGG 0.643407 1_3:-66833762 Msa0135200:CDS
ACCAAGCAGAGATGCAATCG+AGG 0.646963 1_3:+66830765 None:intergenic
GCAGCAAGATTATGTCCCGA+GGG 0.648094 1_3:-66826472 Msa0135200:CDS
AACAACCGAGACAGATCTAG+AGG 0.648500 1_3:-66833087 Msa0135200:CDS
AACATAGCGGAGTCAGAATG+CGG 0.648710 1_3:+66830944 None:intergenic
ATGCTAGCCAGTAGCCACCA+AGG 0.655064 1_3:-66825906 Msa0135200:three_prime_UTR
GCAACGGCAGATGTTAGCAG+TGG 0.657397 1_3:+66831139 None:intergenic
ACTTCTTGGTCTTCTCCCTG+GGG 0.662903 1_3:-66826278 Msa0135200:CDS
CTACACTTGGTACAGCAAGA+GGG 0.666566 1_3:-66831096 Msa0135200:CDS
AATGGAGGGAGTGTTCTTGG+GGG 0.667150 1_3:-66826409 Msa0135200:CDS
GCAATCTCAAGGAAGGCCAG+TGG 0.669941 1_3:+66826186 None:intergenic
AAGCTCGTGGATGTTCTGGA+GGG 0.672881 1_3:+66825870 None:intergenic
TTACCTAAAATAGACAACAC+AGG 0.673146 1_3:-66825677 Msa0135200:three_prime_UTR
AAATGTCCGGTATCATTCCG+AGG 0.674031 1_3:-66833723 Msa0135200:CDS
TTTGCATCTGGATCCTGCTG+AGG 0.674351 1_3:-66832907 Msa0135200:intron
GGTTTACAACAAGGCCCTGG+CGG 0.678697 1_3:+66826054 None:intergenic
ATGGTTGTGGAAAGGGCGCG+TGG 0.678786 1_3:-66831399 Msa0135200:CDS
CGAACGAGCGACGATCGGCG+AGG 0.716961 1_3:+66833789 None:intergenic
CAGCAAGATTATGTCCCGAG+GGG 0.733719 1_3:-66826471 Msa0135200:CDS
GATTCCGATGAGTTCTCCGG+CGG 0.747973 1_3:+66833758 None:intergenic
GTAATGAGCTAAGATTGCAG+AGG 0.760900 1_3:+66826311 None:intergenic
CCGGACATTTCAGTTCCCGG+CGG 0.777672 1_3:+66833736 None:intergenic
ATACGTAAAGTAGAACATAG+CGG 0.800875 1_3:+66830931 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATGAAAAAATAAATTAA+AGG - chr1_3:66832397-66832416 Msa0135200:intron 10.0%
!! TTATATGAAAACAGTTAAAA+TGG + chr1_3:66826119-66826138 None:intergenic 15.0%
!!! ATTATTTTAATAAACTCTTC+AGG + chr1_3:66826167-66826186 None:intergenic 15.0%
!! AAAAAATCCACTAATAAATA+AGG + chr1_3:66827878-66827897 None:intergenic 15.0%
!! TAATCTGAATCATATATTAA+AGG - chr1_3:66827912-66827931 Msa0135200:intron 15.0%
!! TCTATAGATTAAAATTGTTT+AGG - chr1_3:66828074-66828093 Msa0135200:intron 15.0%
!! CTATAGATTAAAATTGTTTA+GGG - chr1_3:66828075-66828094 Msa0135200:intron 15.0%
!! TATAGATTAAAATTGTTTAG+GGG - chr1_3:66828076-66828095 Msa0135200:intron 15.0%
!!! ATTTAACTTTTGTTAAACAA+AGG + chr1_3:66829166-66829185 None:intergenic 15.0%
!! TTAACAAAAGTTAAATAAAG+AGG - chr1_3:66829170-66829189 Msa0135200:intron 15.0%
!!! ATATTAAATTTTGACTTCAT+AGG + chr1_3:66829253-66829272 None:intergenic 15.0%
!! AAAAGTAATATTACTGAAAT+GGG + chr1_3:66832217-66832236 None:intergenic 15.0%
!! TCAAATAAGATATCAATAAA+AGG + chr1_3:66832525-66832544 None:intergenic 15.0%
!!! AAGTAAAACCAAATATATTT+TGG + chr1_3:66832741-66832760 None:intergenic 15.0%
!! ATGCAAAAGTAAATTAATAA+GGG - chr1_3:66832817-66832836 Msa0135200:intron 15.0%
!! TAAATTAAACAAAAGTGAAA+AGG + chr1_3:66833710-66833729 None:intergenic 15.0%
!!! TTTTGTTTAATTTAATCTTG+TGG - chr1_3:66833716-66833735 Msa0135200:CDS 15.0%
!! CAATTAAAAAGTTTCAAACA+TGG + chr1_3:66825621-66825640 None:intergenic 20.0%
!! AATAATTTGAAAACAACCTA+TGG - chr1_3:66826181-66826200 Msa0135200:three_prime_UTR 20.0%
!! ATAAGTCCTTATTCTAATAA+TGG - chr1_3:66826276-66826295 Msa0135200:CDS 20.0%
!! ATAAAGCCATTATTAGAATA+AGG + chr1_3:66826285-66826304 None:intergenic 20.0%
!! TAATAGAAGTCTAGAAATAA+GGG + chr1_3:66826899-66826918 None:intergenic 20.0%
!! TTAATAGAAGTCTAGAAATA+AGG + chr1_3:66826900-66826919 None:intergenic 20.0%
!! ATTAAATGTGAAAACAAATC+AGG - chr1_3:66826925-66826944 Msa0135200:intron 20.0%
!!! TTTGAATTACATTATTGACT+AGG - chr1_3:66827124-66827143 Msa0135200:intron 20.0%
!! ATTCAGATTAAGTTAAGAAT+GGG + chr1_3:66827902-66827921 None:intergenic 20.0%
!! GTAAATAGAAAACATTAGAA+GGG + chr1_3:66828338-66828357 None:intergenic 20.0%
!! TGTAAATAGAAAACATTAGA+AGG + chr1_3:66828339-66828358 None:intergenic 20.0%
!!! AATGTTTTCTATTTACACTA+TGG - chr1_3:66828342-66828361 Msa0135200:intron 20.0%
!! CACAAGAAAATAAATAATGT+GGG + chr1_3:66828563-66828582 None:intergenic 20.0%
!! AAAATGCTTGTATTCAATAA+AGG + chr1_3:66828634-66828653 None:intergenic 20.0%
!!! TGTTTCTAATATCTTTATCA+TGG - chr1_3:66828942-66828961 Msa0135200:intron 20.0%
!!! ATGGTTTCATTTTTTTTATC+AGG - chr1_3:66828961-66828980 Msa0135200:intron 20.0%
!!! TTTTTTTTATCAGGTTTTAC+TGG - chr1_3:66828970-66828989 Msa0135200:intron 20.0%
!!! TGATTCAATTGTTATTAACT+AGG - chr1_3:66829137-66829156 Msa0135200:intron 20.0%
!! AAGAATTACTCACAAAAATA+GGG + chr1_3:66830029-66830048 None:intergenic 20.0%
!! TTGCAATTTACAAATTGAAA+AGG + chr1_3:66830517-66830536 None:intergenic 20.0%
!! TATAAAGAGTTTATAAAGAG+TGG - chr1_3:66831704-66831723 Msa0135200:intron 20.0%
!! TGATAAGAATTTATAAAGAG+TGG - chr1_3:66831941-66831960 Msa0135200:intron 20.0%
!! GAAAAGTAATATTACTGAAA+TGG + chr1_3:66832218-66832237 None:intergenic 20.0%
!! CATTCACATATGTTATAAAA+AGG - chr1_3:66832364-66832383 Msa0135200:CDS 20.0%
!! ATAGGCTTAATTAAACATTA+TGG + chr1_3:66832441-66832460 None:intergenic 20.0%
!! CTGATTTATTGAACTTTAAT+AGG + chr1_3:66832459-66832478 None:intergenic 20.0%
!! CTATTAAAGTTCAATAAATC+AGG - chr1_3:66832457-66832476 Msa0135200:intron 20.0%
!! AATAAGATATCAATAAAAGG+TGG + chr1_3:66832522-66832541 None:intergenic 20.0%
!! AGATTCCATTGTATAAAAAA+GGG + chr1_3:66832764-66832783 None:intergenic 20.0%
!! AAGATTCCATTGTATAAAAA+AGG + chr1_3:66832765-66832784 None:intergenic 20.0%
!! CATGCAAAAGTAAATTAATA+AGG - chr1_3:66832816-66832835 Msa0135200:intron 20.0%
!! TGCAAAAGTAAATTAATAAG+GGG - chr1_3:66832818-66832837 Msa0135200:intron 20.0%
!! ATTAAAATCTATAATCGAGA+TGG + chr1_3:66833507-66833526 None:intergenic 20.0%
!! ATCAAAATTCACTTTAAATC+TGG - chr1_3:66833535-66833554 Msa0135200:intron 20.0%
!! TCAAAATTCACTTTAAATCT+GGG - chr1_3:66833536-66833555 Msa0135200:intron 20.0%
! ACTTATTTAAGCTTATCTAC+TGG + chr1_3:66826262-66826281 None:intergenic 25.0%
! AACAGATATAGTACATTGTT+TGG - chr1_3:66826505-66826524 Msa0135200:intron 25.0%
! ACAGATATAGTACATTGTTT+GGG - chr1_3:66826506-66826525 Msa0135200:intron 25.0%
!!! GGAAATTCTATCACTTTTTT+AGG + chr1_3:66827054-66827073 None:intergenic 25.0%
!!! AACCTCTATATGGTTTTATT+AGG - chr1_3:66827189-66827208 Msa0135200:intron 25.0%
!! AGCAATTTATGCATGTATTT+TGG + chr1_3:66827683-66827702 None:intergenic 25.0%
! TATGTGATCTACATCTTAAT+CGG + chr1_3:66827767-66827786 None:intergenic 25.0%
!!! AGATCACATAATTTTTTCGT+TGG - chr1_3:66827777-66827796 Msa0135200:intron 25.0%
!! CAAAAACATTTTTCCTTTCA+GGG - chr1_3:66827831-66827850 Msa0135200:intron 25.0%
!! ACTGTTTCCTTATTTATTAG+TGG - chr1_3:66827868-66827887 Msa0135200:intron 25.0%
! GATTCAGATTAAGTTAAGAA+TGG + chr1_3:66827903-66827922 None:intergenic 25.0%
!!! ATTTTAGGTTGTAGATTCAA+TGG - chr1_3:66828119-66828138 Msa0135200:intron 25.0%
! CCACAAGAAAATAAATAATG+TGG + chr1_3:66828564-66828583 None:intergenic 25.0%
!!! CCACATTATTTATTTTCTTG+TGG - chr1_3:66828561-66828580 Msa0135200:intron 25.0%
! GTTAATAACAATTGAATCAG+AGG + chr1_3:66829136-66829155 None:intergenic 25.0%
! AAATTAATGAGCCAAACATA+TGG + chr1_3:66829516-66829535 None:intergenic 25.0%
! ATCTTTGAATGTTCCATATT+TGG - chr1_3:66829790-66829809 Msa0135200:intron 25.0%
!! AGATATTTCAACAGGTTTTA+TGG - chr1_3:66829820-66829839 Msa0135200:intron 25.0%
!! GGAATATAAAGCAATTTTAG+TGG - chr1_3:66829862-66829881 Msa0135200:intron 25.0%
! CAAGAATTACTCACAAAAAT+AGG + chr1_3:66830030-66830049 None:intergenic 25.0%
!!! CTATTTTTGTGAGTAATTCT+TGG - chr1_3:66830028-66830047 Msa0135200:intron 25.0%
! GAAGAATGATCCTAAATTAT+TGG - chr1_3:66830490-66830509 Msa0135200:CDS 25.0%
! TTGAAAAGGACCAATAATTT+AGG + chr1_3:66830503-66830522 None:intergenic 25.0%
! TAGGCTAATTGATGTAAAAA+TGG - chr1_3:66830827-66830846 Msa0135200:intron 25.0%
! AGGCTAATTGATGTAAAAAT+GGG - chr1_3:66830828-66830847 Msa0135200:intron 25.0%
! TGATAAGAGTTTATAAAGAG+TGG - chr1_3:66831223-66831242 Msa0135200:intron 25.0%
! TGATACTATGTTGAAATTTG+GGG + chr1_3:66831291-66831310 None:intergenic 25.0%
! CTGATACTATGTTGAAATTT+GGG + chr1_3:66831292-66831311 None:intergenic 25.0%
! TCTGATACTATGTTGAAATT+TGG + chr1_3:66831293-66831312 None:intergenic 25.0%
! TGATAAGAGTTTATAAAGAG+TGG - chr1_3:66831223-66831242 Msa0135200:intron 25.0%
! TGATAAGAGTTTATAAAGAG+TGG - chr1_3:66831223-66831242 Msa0135200:intron 25.0%
! TAATATTACTGAAATGGGAA+AGG + chr1_3:66832212-66832231 None:intergenic 25.0%
! CATACTTATTGAGATATAGA+TGG + chr1_3:66832300-66832319 None:intergenic 25.0%
! TAAAAAAACATTGAAGAGGA+TGG + chr1_3:66832341-66832360 None:intergenic 25.0%
! GAGATAAAAAAACATTGAAG+AGG + chr1_3:66832345-66832364 None:intergenic 25.0%
! AATTTCTTACAGATTACTAG+AGG + chr1_3:66832601-66832620 None:intergenic 25.0%
! ACTTCATGCCAAAATATATT+TGG - chr1_3:66832730-66832749 Msa0135200:intron 25.0%
!!! TACTTCCCTTTTTTATACAA+TGG - chr1_3:66832756-66832775 Msa0135200:intron 25.0%
! CATTGTCAAAAGACTATTAT+TGG + chr1_3:66833784-66833803 None:intergenic 25.0%
! TTACAAAAGCTTGTATAAAC+AGG + chr1_3:66833833-66833852 None:intergenic 25.0%
! ATTTACCTAAAATAGACAAC+AGG - chr1_3:66833858-66833877 Msa0135200:exon 25.0%
TAGAAATTGGGAAATTTGGA+GGG + chr1_3:66825726-66825745 None:intergenic 30.0%
GTGGAATTTGACAATTTCTT+CGG + chr1_3:66825925-66825944 None:intergenic 30.0%
ATATCTTATGGTGTTTCCAT+AGG + chr1_3:66826200-66826219 None:intergenic 30.0%
GAGCTTATGGAAATATCTTA+TGG + chr1_3:66826212-66826231 None:intergenic 30.0%
! GTCAAGTTTTTACTATGTGA+AGG - chr1_3:66826312-66826331 Msa0135200:CDS 30.0%
!!! CATTGTTTTGATTTTGTGAC+AGG - chr1_3:66826406-66826425 Msa0135200:CDS 30.0%
!! TACTTTGTTCAAGGTGTTTT+AGG - chr1_3:66826568-66826587 Msa0135200:intron 30.0%
!! GGCTGTCAGTTTTTATTTAA+AGG - chr1_3:66826603-66826622 Msa0135200:intron 30.0%
! TTTAAAGGATGATTTGCATC+TGG - chr1_3:66826618-66826637 Msa0135200:intron 30.0%
GAAGAGCAAAATTTGCAAAA+TGG + chr1_3:66826719-66826738 None:intergenic 30.0%
CACATTAATTGATTACACCT+CGG + chr1_3:66826750-66826769 None:intergenic 30.0%
!! CTTTGCTTGTGTTTGTTATT+GGG - chr1_3:66826773-66826792 Msa0135200:intron 30.0%
CATATGCAATATAGAAGACA+AGG + chr1_3:66826850-66826869 None:intergenic 30.0%
TCAGGAACTATAAGTAGATA+AGG - chr1_3:66826943-66826962 Msa0135200:intron 30.0%
CAGGAACTATAAGTAGATAA+GGG - chr1_3:66826944-66826963 Msa0135200:intron 30.0%
! ATTTTATAGTTGACCCTGTT+AGG + chr1_3:66827031-66827050 None:intergenic 30.0%
!!! ACACCACTCCTTTTTATTTT+TGG - chr1_3:66827079-66827098 Msa0135200:intron 30.0%
GATCCAAAAATAAAAAGGAG+TGG + chr1_3:66827085-66827104 None:intergenic 30.0%
GACTCGATCCAAAAATAAAA+AGG + chr1_3:66827090-66827109 None:intergenic 30.0%
CACCTAATAAAACCATATAG+AGG + chr1_3:66827194-66827213 None:intergenic 30.0%
! TAATTAAACTTTTGTCCACG+GGG + chr1_3:66827285-66827304 None:intergenic 30.0%
! GTAATTAAACTTTTGTCCAC+GGG + chr1_3:66827286-66827305 None:intergenic 30.0%
! GGTAATTAAACTTTTGTCCA+CGG + chr1_3:66827287-66827306 None:intergenic 30.0%
!! ATATTTGTTGTCAACAGAAG+TGG + chr1_3:66827419-66827438 None:intergenic 30.0%
! CCTGAAAGGAAAAATGTTTT+TGG + chr1_3:66827833-66827852 None:intergenic 30.0%
! CCAAAAACATTTTTCCTTTC+AGG - chr1_3:66827830-66827849 Msa0135200:intron 30.0%
!! TACATTGTTATTTCCCTGAA+AGG + chr1_3:66827847-66827866 None:intergenic 30.0%
AATTGAACCAACTCAAATGT+TGG + chr1_3:66827989-66828008 None:intergenic 30.0%
!!! GAAGCATTTTATTTTGTCTC+TGG - chr1_3:66828027-66828046 Msa0135200:intron 30.0%
! CAGACACTAAGCTATATTTT+AGG - chr1_3:66828104-66828123 Msa0135200:intron 30.0%
! TTCTTTTACAAGAACAGCAA+CGG + chr1_3:66828417-66828436 None:intergenic 30.0%
TTTGAACTTTCCAAAAACTC+AGG + chr1_3:66828488-66828507 None:intergenic 30.0%
AATGTGGGAAGAAAAATACT+AGG + chr1_3:66828548-66828567 None:intergenic 30.0%
ATACGTAAAGTAGAACATAG+CGG + chr1_3:66828609-66828628 None:intergenic 30.0%
AGTAAATGATGTGTATTGAG+AGG + chr1_3:66828672-66828691 None:intergenic 30.0%
CTTTGCGGAAAATATTTCTT+GGG - chr1_3:66828829-66828848 Msa0135200:intron 30.0%
AGTATGTTTGTAGTGTTAGT+TGG - chr1_3:66828912-66828931 Msa0135200:intron 30.0%
CTCTTTAATGTCAGATATTC+AGG - chr1_3:66829277-66829296 Msa0135200:intron 30.0%
TTTAATGTCAGATATTCAGG+CGG - chr1_3:66829280-66829299 Msa0135200:intron 30.0%
AGTTGTTGGATGAGATAAAA+AGG + chr1_3:66829486-66829505 None:intergenic 30.0%
!! AAACCAGTTTGTTAGATTAG+TGG - chr1_3:66829539-66829558 Msa0135200:intron 30.0%
!! AACCAGTTTGTTAGATTAGT+GGG - chr1_3:66829540-66829559 Msa0135200:intron 30.0%
GGTGTTTACTAGAAGAAAAA+CGG - chr1_3:66829566-66829585 Msa0135200:intron 30.0%
GTGTTTACTAGAAGAAAAAC+GGG - chr1_3:66829567-66829586 Msa0135200:intron 30.0%
TGTTTACTAGAAGAAAAACG+GGG - chr1_3:66829568-66829587 Msa0135200:intron 30.0%
! GTCAATTGTTTTCTACGATA+TGG - chr1_3:66829620-66829639 Msa0135200:intron 30.0%
AAGGCAAAAATATTTAGCTG+TGG - chr1_3:66829747-66829766 Msa0135200:intron 30.0%
! GCTTTATATTCCTTTGACTT+TGG + chr1_3:66829854-66829873 None:intergenic 30.0%
AACTGTTTAGTAAAGAGGTT+GGG - chr1_3:66829955-66829974 Msa0135200:intron 30.0%
!! TGACTCTTACAATGGATTTT+GGG + chr1_3:66830002-66830021 None:intergenic 30.0%
! TTTTGTGAGTAATTCTTGGA+AGG - chr1_3:66830032-66830051 Msa0135200:intron 30.0%
CATCTATATAACACTTCAGT+CGG + chr1_3:66830123-66830142 None:intergenic 30.0%
! GCGTGAGATTTAATTGATTT+GGG - chr1_3:66830332-66830351 Msa0135200:intron 30.0%
GAGAAACATGGAATATTGAA+TGG + chr1_3:66830560-66830579 None:intergenic 30.0%
! TGTTGGCTACTAGAAAAATA+AGG - chr1_3:66830675-66830694 Msa0135200:intron 30.0%
GTTGGCTACTAGAAAAATAA+GGG - chr1_3:66830676-66830695 Msa0135200:intron 30.0%
AAGAAGTCAATTACCAACAT+AGG - chr1_3:66830781-66830800 Msa0135200:CDS 30.0%
GGCTAATTGATGTAAAAATG+GGG - chr1_3:66830829-66830848 Msa0135200:intron 30.0%
GCTAATTGATGTAAAAATGG+GGG - chr1_3:66830830-66830849 Msa0135200:intron 30.0%
ATACCTGAAGAGACAAAATA+GGG - chr1_3:66830920-66830939 Msa0135200:intron 30.0%
TAGATTAACACCTGTGAATA+CGG + chr1_3:66831002-66831021 None:intergenic 30.0%
!! TTCTAAAGCCTTTCATTTCT+CGG - chr1_3:66832273-66832292 Msa0135200:intron 30.0%
GGCTTAATTAAACATTATGG+AGG + chr1_3:66832438-66832457 None:intergenic 30.0%
AGATATCAATAAAAGGTGGA+CGG + chr1_3:66832518-66832537 None:intergenic 30.0%
TGCTTATTTGCAAGTATACA+TGG - chr1_3:66832686-66832705 Msa0135200:intron 30.0%
! ATGGTTTTCCATGGATTTTT+AGG - chr1_3:66832705-66832724 Msa0135200:intron 30.0%
! TGGTTTTCCATGGATTTTTA+GGG - chr1_3:66832706-66832725 Msa0135200:intron 30.0%
! ATCTTTCAACTATTTTCCCT+AGG - chr1_3:66832780-66832799 Msa0135200:intron 30.0%
!! GTAGCTTTGATAATTGCAAT+TGG - chr1_3:66832856-66832875 Msa0135200:intron 30.0%
CAGTGAATGATATTATTGCT+TGG + chr1_3:66832926-66832945 None:intergenic 30.0%
! TGCATGAATTACCTTCTTTT+GGG - chr1_3:66832944-66832963 Msa0135200:CDS 30.0%
TAATTCCAAATACTTGAGTC+AGG + chr1_3:66833169-66833188 None:intergenic 30.0%
! TCAAGTATTTGGAATTACCA+AGG - chr1_3:66833172-66833191 Msa0135200:intron 30.0%
CAAGTTATCAAATTTGTCCT+TGG + chr1_3:66833192-66833211 None:intergenic 30.0%
! CAAGGACAAATTTGATAACT+TGG - chr1_3:66833190-66833209 Msa0135200:intron 30.0%
ATTAGACTTCATCTCGATTT+CGG + chr1_3:66833315-66833334 None:intergenic 30.0%
CTGTCTCAATGTTCTTAAAA+TGG + chr1_3:66833577-66833596 None:intergenic 30.0%
AGTCCTTACAAAGAAGTAAA+AGG + chr1_3:66833742-66833761 None:intergenic 30.0%
TTACCTAAAATAGACAACAC+AGG - chr1_3:66833860-66833879 Msa0135200:exon 30.0%
! AGTCATCGTGTCTCTATTTT+TGG + chr1_3:66825575-66825594 None:intergenic 35.0%
GTAGAAATTGGGAAATTTGG+AGG + chr1_3:66825727-66825746 None:intergenic 35.0%
GGTGTAGAAATTGGGAAATT+TGG + chr1_3:66825730-66825749 None:intergenic 35.0%
!! TCATTATTGGGTTCTAGAAC+TGG - chr1_3:66825876-66825895 Msa0135200:three_prime_UTR 35.0%
GAATTTGACAATTTCTTCGG+AGG + chr1_3:66825922-66825941 None:intergenic 35.0%
TTTACTATGTGAAGGATCAG+CGG - chr1_3:66826320-66826339 Msa0135200:CDS 35.0%
!!! ACACCATTGTTTGTTTTAGC+TGG - chr1_3:66826343-66826362 Msa0135200:CDS 35.0%
TAGCCAGCTAAAACAAACAA+TGG + chr1_3:66826349-66826368 None:intergenic 35.0%
! AAGCGCATTTTTACTAGTAG+AGG + chr1_3:66826479-66826498 None:intergenic 35.0%
CCAATAACAAACACAAGCAA+AGG + chr1_3:66826775-66826794 None:intergenic 35.0%
!! CCTTTGCTTGTGTTTGTTAT+TGG - chr1_3:66826772-66826791 Msa0135200:intron 35.0%
! TTGTTATTGGGACTTAGTGA+AGG - chr1_3:66826785-66826804 Msa0135200:intron 35.0%
TAAAAAGGAGTGGTGTTTCA+AGG + chr1_3:66827075-66827094 None:intergenic 35.0%
TATAATGAACAGACTGTACG+AGG + chr1_3:66827245-66827264 None:intergenic 35.0%
! AATTAAACTTTTGTCCACGG+GGG + chr1_3:66827284-66827303 None:intergenic 35.0%
!!! AGGTCATACCTAGTTTTATC+CGG - chr1_3:66827361-66827380 Msa0135200:intron 35.0%
ATCCATGGTTAAATGATTCC+AGG + chr1_3:66827537-66827556 None:intergenic 35.0%
CATGTGACAAACATTATCCA+TGG + chr1_3:66827552-66827571 None:intergenic 35.0%
CATGCATAAATTGCTTCTGT+TGG - chr1_3:66827688-66827707 Msa0135200:intron 35.0%
ACACAAACCAACATTTGAGT+TGG - chr1_3:66827979-66827998 Msa0135200:intron 35.0%
TAGATTCAATGGTTGTGGAA+AGG - chr1_3:66828130-66828149 Msa0135200:intron 35.0%
AGATTCAATGGTTGTGGAAA+GGG - chr1_3:66828131-66828150 Msa0135200:intron 35.0%
TTCTATTTACACTATGGTCC+AGG - chr1_3:66828348-66828367 Msa0135200:intron 35.0%
GTAAAAGAACAACCTACACT+TGG - chr1_3:66828428-66828447 Msa0135200:intron 35.0%
CAAGAGAATTTGTGCTGAAA+TGG + chr1_3:66828713-66828732 None:intergenic 35.0%
CATTTCAGCACAAATTCTCT+TGG - chr1_3:66828711-66828730 Msa0135200:intron 35.0%
!! CTTGGTGTTGGACTTTATAA+TGG - chr1_3:66828789-66828808 Msa0135200:intron 35.0%
! TTCTGAAGAATGTTCCTTTG+CGG - chr1_3:66828814-66828833 Msa0135200:intron 35.0%
! CCAAGAAATATTTTCCGCAA+AGG + chr1_3:66828831-66828850 None:intergenic 35.0%
CCTTTGCGGAAAATATTTCT+TGG - chr1_3:66828828-66828847 Msa0135200:intron 35.0%
TTTGTAGTGTTAGTTGGAGA+AGG - chr1_3:66828918-66828937 Msa0135200:intron 35.0%
!! TATCAGGTTTTACTGGTTAC+TGG - chr1_3:66828977-66828996 Msa0135200:intron 35.0%
!! AATTCTCACTGTTTTGAGTC+AGG - chr1_3:66829054-66829073 Msa0135200:intron 35.0%
!!! AGACGCTTTTTTCTCTGATT+TGG - chr1_3:66829448-66829467 Msa0135200:intron 35.0%
AACTTCGTAAGCCATATGTT+TGG - chr1_3:66829502-66829521 Msa0135200:intron 35.0%
!! ACCAGTTTGTTAGATTAGTG+GGG - chr1_3:66829541-66829560 Msa0135200:intron 35.0%
! TCTTTTGTGTTGTCAGTCAA+AGG - chr1_3:66829728-66829747 Msa0135200:intron 35.0%
AGATTGCAACAAACCAGTAT+GGG + chr1_3:66829774-66829793 None:intergenic 35.0%
AAGATTGCAACAAACCAGTA+TGG + chr1_3:66829775-66829794 None:intergenic 35.0%
TGAATGTTCCATATTTGGTC+TGG - chr1_3:66829795-66829814 Msa0135200:intron 35.0%
GAATGTTCCATATTTGGTCT+GGG - chr1_3:66829796-66829815 Msa0135200:intron 35.0%
ATATCTTCCCAGACCAAATA+TGG + chr1_3:66829806-66829825 None:intergenic 35.0%
!!! AGTGCAACCAGTTTTTTTGT+TGG - chr1_3:66829902-66829921 Msa0135200:intron 35.0%
GAACTGTTTAGTAAAGAGGT+TGG - chr1_3:66829954-66829973 Msa0135200:intron 35.0%
!! GTGACTCTTACAATGGATTT+TGG + chr1_3:66830003-66830022 None:intergenic 35.0%
AAGGAATAATTTCAGCTGCT+TGG - chr1_3:66830051-66830070 Msa0135200:intron 35.0%
! GAAGTGTTATATAGATGCTC+AGG - chr1_3:66830126-66830145 Msa0135200:intron 35.0%
TTGCAGATAACAAGTGATTG+TGG + chr1_3:66830288-66830307 None:intergenic 35.0%
!! ACAATCACTTGTTATCTGCA+AGG - chr1_3:66830287-66830306 Msa0135200:intron 35.0%
!! CAATCACTTGTTATCTGCAA+GGG - chr1_3:66830288-66830307 Msa0135200:intron 35.0%
!! AATCACTTGTTATCTGCAAG+GGG - chr1_3:66830289-66830308 Msa0135200:intron 35.0%
GGCGTGAGATTTAATTGATT+TGG - chr1_3:66830331-66830350 Msa0135200:intron 35.0%
! AGTGTAATTTAGAGCAACGT+TGG - chr1_3:66830376-66830395 Msa0135200:intron 35.0%
ATGTGACAATCATTTGCAGT+TGG - chr1_3:66830421-66830440 Msa0135200:intron 35.0%
! GGAGAGTTTTCTTGAAATTC+AGG - chr1_3:66830442-66830461 Msa0135200:intron 35.0%
GCCATACTAACAGCATTATA+TGG - chr1_3:66830464-66830483 Msa0135200:intron 35.0%
GCCATATAATGCTGTTAGTA+TGG + chr1_3:66830468-66830487 None:intergenic 35.0%
ATTGAATGGATCGTAGAAGT+TGG + chr1_3:66830546-66830565 None:intergenic 35.0%
! CTCTTTTAAGCTGAGAAACA+TGG + chr1_3:66830572-66830591 None:intergenic 35.0%
GCTACTAGAAAAATAAGGGA+AGG - chr1_3:66830680-66830699 Msa0135200:intron 35.0%
CTACTTAATGAGCGATAAAG+TGG - chr1_3:66830711-66830730 Msa0135200:intron 35.0%
TTAATGAGCGATAAAGTGGA+AGG - chr1_3:66830715-66830734 Msa0135200:intron 35.0%
TTTCAATGAAGCATGTTCCA+AGG + chr1_3:66830747-66830766 None:intergenic 35.0%
GATGTAAAAATGGGGGTTAT+TGG - chr1_3:66830837-66830856 Msa0135200:intron 35.0%
TGGAAGAATTCAAGGTCATA+CGG - chr1_3:66830857-66830876 Msa0135200:intron 35.0%
ATTCAAGGTCATACGGTTAA+TGG - chr1_3:66830864-66830883 Msa0135200:intron 35.0%
TTCAAGGTCATACGGTTAAT+GGG - chr1_3:66830865-66830884 Msa0135200:intron 35.0%
TATGCACCTTCAAAAATCCT+GGG + chr1_3:66830903-66830922 None:intergenic 35.0%
CATACCTGAAGAGACAAAAT+AGG - chr1_3:66830919-66830938 Msa0135200:intron 35.0%
AGAGACAAAATAGGGCAAAA+TGG - chr1_3:66830928-66830947 Msa0135200:intron 35.0%
GAGACAAAATAGGGCAAAAT+GGG - chr1_3:66830929-66830948 Msa0135200:intron 35.0%
AGACAAAATAGGGCAAAATG+GGG - chr1_3:66830930-66830949 Msa0135200:intron 35.0%
ATTCACAGGTGTTAATCTAG+TGG - chr1_3:66831003-66831022 Msa0135200:CDS 35.0%
TTCACAGGTGTTAATCTAGT+GGG - chr1_3:66831004-66831023 Msa0135200:CDS 35.0%
ATGATCAGTGTGAATGTTGT+TGG - chr1_3:66831037-66831056 Msa0135200:CDS 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_3:66831267-66831286 None:intergenic 35.0%
TAGTCCCACATTGTTTAGAT+AGG - chr1_3:66831450-66831469 Msa0135200:intron 35.0%
GCATCCTATCTAAACAATGT+GGG + chr1_3:66831457-66831476 None:intergenic 35.0%
AGCATCCTATCTAAACAATG+TGG + chr1_3:66831458-66831477 None:intergenic 35.0%
GATAGGATGCTTGTTTAGAT+AGG - chr1_3:66831467-66831486 Msa0135200:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_3:66831267-66831286 None:intergenic 35.0%
TCGAGAACTGTTGAAATGTA+GGG + chr1_3:66832159-66832178 None:intergenic 35.0%
ATCGAGAACTGTTGAAATGT+AGG + chr1_3:66832160-66832179 None:intergenic 35.0%
! TTTTCTTTCCTATCTCTCTC+TGG - chr1_3:66832233-66832252 Msa0135200:intron 35.0%
!! AAATGAAAGGCTTTAGAAGG+TGG + chr1_3:66832271-66832290 None:intergenic 35.0%
!! GAGAAATGAAAGGCTTTAGA+AGG + chr1_3:66832274-66832293 None:intergenic 35.0%
ACATTGAAGAGGATGGATAA+TGG + chr1_3:66832334-66832353 None:intergenic 35.0%
TCACAACCTAAGACTTCAAT+AGG + chr1_3:66832488-66832507 None:intergenic 35.0%
GATATCAATAAAAGGTGGAC+GGG + chr1_3:66832517-66832536 None:intergenic 35.0%
! AGTTTTTGCAACTCAGATAG+TGG - chr1_3:66832575-66832594 Msa0135200:intron 35.0%
! CAAGTATACATGGTTTTCCA+TGG - chr1_3:66832696-66832715 Msa0135200:intron 35.0%
! TGAAGTACCCTAAAAATCCA+TGG + chr1_3:66832716-66832735 None:intergenic 35.0%
ATGTGAAAATGAGCATCCTA+GGG + chr1_3:66832799-66832818 None:intergenic 35.0%
! CTGCATGAATTACCTTCTTT+TGG - chr1_3:66832943-66832962 Msa0135200:CDS 35.0%
! GCATGAATTACCTTCTTTTG+GGG - chr1_3:66832945-66832964 Msa0135200:CDS 35.0%
TGAATTAAAGCCCCAAAAGA+AGG + chr1_3:66832958-66832977 None:intergenic 35.0%
TCTGAATGCTAGTGTATTTC+AGG - chr1_3:66833016-66833035 Msa0135200:CDS 35.0%
ACTCTCATGTCTGTATCTAA+TGG - chr1_3:66833110-66833129 Msa0135200:CDS 35.0%
TCATGTCTGTATCTAATGGA+GGG - chr1_3:66833114-66833133 Msa0135200:intron 35.0%
TGATATTAGTTGTTCTCCAC+TGG - chr1_3:66833335-66833354 Msa0135200:intron 35.0%
TAGAACAGCTTGGATAAGAA+AGG + chr1_3:66833376-66833395 None:intergenic 35.0%
AAGCAAAACTTAGAACAGCT+TGG + chr1_3:66833386-66833405 None:intergenic 35.0%
AATCGAGATGGTTTACAACA+AGG + chr1_3:66833495-66833514 None:intergenic 35.0%
TCACTTTAAATCTGGGTTTG+TGG - chr1_3:66833543-66833562 Msa0135200:intron 35.0%
! TGGCCTTTTACTTCTTTGTA+AGG - chr1_3:66833736-66833755 Msa0135200:CDS 35.0%
! TAGCCTGTGTTGTCTATTTT+AGG + chr1_3:66833866-66833885 None:intergenic 35.0%
! TGTAGCCTGTTGTCTATTTT+AGG + chr1_3:66833950-66833969 None:intergenic 35.0%
CTTCTGTATCATCTAGTGTA+TGG - chr1_3:66833992-66834011 Msa0135200:five_prime_UTR 35.0%
GGAAATTTGGAGGGCAATAA+CGG + chr1_3:66825717-66825736 None:intergenic 40.0%
GACGATAGCGACTCATTATT+GGG - chr1_3:66825864-66825883 Msa0135200:three_prime_UTR 40.0%
AGACTGTTTAGCAGAGCTTA+TGG + chr1_3:66826225-66826244 None:intergenic 40.0%
TTATCTACTGGCATAAGCAC+CGG + chr1_3:66826250-66826269 None:intergenic 40.0%
!! TTTGATTTTGTGACAGGTGC+AGG - chr1_3:66826412-66826431 Msa0135200:CDS 40.0%
GCGATGGTATACTTTGTTCA+AGG - chr1_3:66826559-66826578 Msa0135200:intron 40.0%
!!! AAGGTGTTTTAGGACTAGCA+AGG - chr1_3:66826578-66826597 Msa0135200:intron 40.0%
!!! TGTTTTAGGACTAGCAAGGT+TGG - chr1_3:66826582-66826601 Msa0135200:intron 40.0%
TTAAGAATGGATACCTCAGC+AGG + chr1_3:66826646-66826665 None:intergenic 40.0%
GTATCCATTCTTAAGACTCG+TGG - chr1_3:66826652-66826671 Msa0135200:intron 40.0%
ACAACCACGAGTCTTAAGAA+TGG + chr1_3:66826659-66826678 None:intergenic 40.0%
TTGCTCTTCTATATGATCCG+AGG - chr1_3:66826730-66826749 Msa0135200:intron 40.0%
TGCCTCTCATATATCCTAAC+AGG - chr1_3:66827014-66827033 Msa0135200:intron 40.0%
GCCTCTCATATATCCTAACA+GGG - chr1_3:66827015-66827034 Msa0135200:intron 40.0%
ACCCTGTTAGGATATATGAG+AGG + chr1_3:66827019-66827038 None:intergenic 40.0%
TATAGAGGTTTCACAAGCCA+TGG + chr1_3:66827179-66827198 None:intergenic 40.0%
! TGGCTTGTGAAACCTCTATA+TGG - chr1_3:66827179-66827198 Msa0135200:intron 40.0%
GCATGTCAAAACAACAGCTT+CGG + chr1_3:66827308-66827327 None:intergenic 40.0%
!!! CTATCCCCCTTTTTGGTTAT+CGG - chr1_3:66827335-66827354 Msa0135200:intron 40.0%
TTCTCCGATAACCAAAAAGG+GGG + chr1_3:66827342-66827361 None:intergenic 40.0%
CTTCTCCGATAACCAAAAAG+GGG + chr1_3:66827343-66827362 None:intergenic 40.0%
CCTTCTCCGATAACCAAAAA+GGG + chr1_3:66827344-66827363 None:intergenic 40.0%
ACCTTCTCCGATAACCAAAA+AGG + chr1_3:66827345-66827364 None:intergenic 40.0%
!!! GCTGCTTTTTGCATACTTCT+TGG - chr1_3:66827442-66827461 Msa0135200:intron 40.0%
!! ATCTCTCTCTGTTGCTTTCT+CGG - chr1_3:66827465-66827484 Msa0135200:intron 40.0%
!! CACACATACTGTTTTTCTCC+TGG - chr1_3:66827516-66827535 Msa0135200:intron 40.0%
CTCCTGGAATCATTTAACCA+TGG - chr1_3:66827532-66827551 Msa0135200:intron 40.0%
CTAGTTCAGTAACCTCACAT+AGG + chr1_3:66827604-66827623 None:intergenic 40.0%
GGTTGTAGATTCAATGGTTG+TGG - chr1_3:66828125-66828144 Msa0135200:intron 40.0%
ATCTCTTCAGTCCTTATGCT+GGG - chr1_3:66828182-66828201 Msa0135200:intron 40.0%
TGTTGGATGCATATGGAGTA+AGG - chr1_3:66828253-66828272 Msa0135200:intron 40.0%
! TGCATATGGAGTAAGGTACT+AGG - chr1_3:66828260-66828279 Msa0135200:intron 40.0%
! GCATATGGAGTAAGGTACTA+GGG - chr1_3:66828261-66828280 Msa0135200:intron 40.0%
!! CTATGGTCCAGGTTTGTTTT+TGG - chr1_3:66828359-66828378 Msa0135200:intron 40.0%
TGTGACACCAAAAACAAACC+TGG + chr1_3:66828369-66828388 None:intergenic 40.0%
! AACAGAGTATCATTCAGCTG+TGG - chr1_3:66828507-66828526 Msa0135200:intron 40.0%
! ACAGAGTATCATTCAGCTGT+GGG - chr1_3:66828508-66828527 Msa0135200:intron 40.0%
TTGACACGTCCTAAAAACTC+GGG + chr1_3:66828744-66828763 None:intergenic 40.0%
CTTGACACGTCCTAAAAACT+CGG + chr1_3:66828745-66828764 None:intergenic 40.0%
TTTCTTGGGACTACCATCTT+AGG - chr1_3:66828843-66828862 Msa0135200:intron 40.0%
! TACTGGTTACTGGACTAAAC+CGG - chr1_3:66828987-66829006 Msa0135200:intron 40.0%
CATCGCTTATTCCAAACTTC+CGG + chr1_3:66829009-66829028 None:intergenic 40.0%
! AGTTTGGAATAAGCGATGAG+TGG - chr1_3:66829011-66829030 Msa0135200:intron 40.0%
CATATGGCTTACGAAGTTGT+TGG + chr1_3:66829500-66829519 None:intergenic 40.0%
TCCCCACTAATCTAACAAAC+TGG + chr1_3:66829545-66829564 None:intergenic 40.0%
! GTTTGTTAGATTAGTGGGGA+AGG - chr1_3:66829545-66829564 Msa0135200:intron 40.0%
TACTAGAAGAAAAACGGGGA+AGG - chr1_3:66829572-66829591 Msa0135200:intron 40.0%
TATCCTTAGCAGTTCAGCAT+TGG - chr1_3:66829697-66829716 Msa0135200:intron 40.0%
GTCTGGGAAGATATTTCAAC+AGG - chr1_3:66829812-66829831 Msa0135200:intron 40.0%
!! CAATTTTAGTGGTGACCGTA+GGG - chr1_3:66829873-66829892 Msa0135200:intron 40.0%
CGGTGTTCCAACAAAAAAAC+TGG + chr1_3:66829912-66829931 None:intergenic 40.0%
! CCACTAAGTTGGCTGTATAA+CGG + chr1_3:66829932-66829951 None:intergenic 40.0%
TTATACAGCCAACTTAGTGG+CGG - chr1_3:66829932-66829951 Msa0135200:intron 40.0%
AGGGTTTGTGACTCTTACAA+TGG + chr1_3:66830010-66830029 None:intergenic 40.0%
GCATATCATCCCAAATCTGA+TGG - chr1_3:66830096-66830115 Msa0135200:intron 40.0%
AGATGCTCAGGATTTACTTC+AGG - chr1_3:66830138-66830157 Msa0135200:intron 40.0%
TCAAACTGTGTCATACCAAC+AGG + chr1_3:66830245-66830264 None:intergenic 40.0%
TGTTGGTATGACACAGTTTG+AGG - chr1_3:66830244-66830263 Msa0135200:intron 40.0%
AGTGATTGTGGTGAATTGCA+TGG + chr1_3:66830276-66830295 None:intergenic 40.0%
TCAGCTTAAAAGAGCAGTGT+GGG - chr1_3:66830578-66830597 Msa0135200:intron 40.0%
TAATTGCAGCTCAACAGGAT+AGG + chr1_3:66830606-66830625 None:intergenic 40.0%
CTAGTAGCCAACATAAACTC+AGG + chr1_3:66830668-66830687 None:intergenic 40.0%
! TGAAGCATGTTCCAAGGTTT+TGG + chr1_3:66830741-66830760 None:intergenic 40.0%
TCAATTACCAACATAGGCTG+TGG - chr1_3:66830787-66830806 Msa0135200:CDS 40.0%
GGGGTTATTGGAAGAATTCA+AGG - chr1_3:66830849-66830868 Msa0135200:intron 40.0%
! CAAATGCCCAGGATTTTTGA+AGG - chr1_3:66830894-66830913 Msa0135200:intron 40.0%
GTATGCACCTTCAAAAATCC+TGG + chr1_3:66830904-66830923 None:intergenic 40.0%
! TTGCCCTATTTTGTCTCTTC+AGG + chr1_3:66830926-66830945 None:intergenic 40.0%
AAAATAGGGCAAAATGGGGA+AGG - chr1_3:66830934-66830953 Msa0135200:intron 40.0%
TCACAGGTGTTAATCTAGTG+GGG - chr1_3:66831005-66831024 Msa0135200:CDS 40.0%
CAAGAACTTAAGACTCCACA+GGG + chr1_3:66831072-66831091 None:intergenic 40.0%
ACAAGAACTTAAGACTCCAC+AGG + chr1_3:66831073-66831092 None:intergenic 40.0%
GTGGAGTCTTAAGTTCTTGT+TGG - chr1_3:66831073-66831092 Msa0135200:CDS 40.0%
!! TTGTCTTGGCTTGTCTTTGA+GGG - chr1_3:66831164-66831183 Msa0135200:CDS 40.0%
!! CCTTACAAAACCGGTTTGTA+AGG + chr1_3:66831258-66831277 None:intergenic 40.0%
!! CCTTACAAACCGGTTTTGTA+AGG - chr1_3:66831255-66831274 Msa0135200:intron 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1_3:66831265-66831284 Msa0135200:intron 40.0%
GTCACTCATCCTTACAAAAC+CGG + chr1_3:66831539-66831558 None:intergenic 40.0%
!! TTGTGTTGGCTTGTCTTTGA+GGG - chr1_3:66831673-66831692 Msa0135200:intron 40.0%
GTCACTCATCCTTACAAAAC+CGG + chr1_3:66831539-66831558 None:intergenic 40.0%
GGGCAAATTGCAATTAAGGT+GGG + chr1_3:66831853-66831872 None:intergenic 40.0%
!! TTGTGTTGGCTTGTCTTTGA+GGG - chr1_3:66831673-66831692 Msa0135200:intron 40.0%
! TTGTCCCACATTGGTTAGAT+AGG - chr1_3:66831913-66831932 Msa0135200:intron 40.0%
CCTTACAAAACCGGATTGTA+AGG + chr1_3:66831976-66831995 None:intergenic 40.0%
!! CCTTACAATCCGGTTTTGTA+AGG - chr1_3:66831973-66831992 Msa0135200:intron 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1_3:66831265-66831284 Msa0135200:intron 40.0%
!! TTGTGTTGGCTTGTCTTTGA+GGG - chr1_3:66831673-66831692 Msa0135200:intron 40.0%
CCTTACAAAACCAGCTTGTA+AGG + chr1_3:66832119-66832138 None:intergenic 40.0%
!!! CCTTACAAGCTGGTTTTGTA+AGG - chr1_3:66832116-66832135 Msa0135200:CDS 40.0%
!! TTCCTATCTCTCTCTGGTTT+TGG - chr1_3:66832239-66832258 Msa0135200:intron 40.0%
TAGATGGACCGAGAAATGAA+AGG + chr1_3:66832284-66832303 None:intergenic 40.0%
GATCAGCCTATTGAAGTCTT+AGG - chr1_3:66832479-66832498 Msa0135200:intron 40.0%
!! GAAAGCTTCTCGTTTTTCTG+TGG + chr1_3:66832657-66832676 None:intergenic 40.0%
CATGTGAAAATGAGCATCCT+AGG + chr1_3:66832800-66832819 None:intergenic 40.0%
CTCATGTCTGTATCTAATGG+AGG - chr1_3:66833113-66833132 Msa0135200:intron 40.0%
GTAATGAGCTAAGATTGCAG+AGG + chr1_3:66833229-66833248 None:intergenic 40.0%
CAATCCTGATGCAAATCCAA+AGG - chr1_3:66833283-66833302 Msa0135200:intron 40.0%
AAGAAAGGCAATCTCAAGGA+AGG + chr1_3:66833361-66833380 None:intergenic 40.0%
GGATAAGAAAGGCAATCTCA+AGG + chr1_3:66833365-66833384 None:intergenic 40.0%
CAGTGCTATACAATATGCTC+TGG - chr1_3:66833594-66833613 Msa0135200:intron 40.0%
CAACAAACTTACAAAGCTCG+TGG + chr1_3:66833683-66833702 None:intergenic 40.0%
ATCGGCGAGGTGTAGAAATT+GGG + chr1_3:66825738-66825757 None:intergenic 45.0%
ATACCGGACATTTCAGTTCC+CGG + chr1_3:66825807-66825826 None:intergenic 45.0%
AAATGTCCGGTATCATTCCG+AGG - chr1_3:66825814-66825833 Msa0135200:three_prime_UTR 45.0%
CGACGATAGCGACTCATTAT+TGG - chr1_3:66825863-66825882 Msa0135200:three_prime_UTR 45.0%
AAGAAACGCGATGAAAGACG+TGG + chr1_3:66825944-66825963 None:intergenic 45.0%
TTTGTGACAGGTGCAGGAAA+AGG - chr1_3:66826418-66826437 Msa0135200:CDS 45.0%
AACAACCGAGACAGATCTAG+AGG - chr1_3:66826450-66826469 Msa0135200:CDS 45.0%
! GTTTGGGATTGATCTATCCC+CGG - chr1_3:66826522-66826541 Msa0135200:intron 45.0%
ATCGCAACAGCAACAGTATC+CGG + chr1_3:66826544-66826563 None:intergenic 45.0%
! CTGGTATTTCTGCGTTTCCA+TGG - chr1_3:66827159-66827178 Msa0135200:intron 45.0%
! AGTGACTCTATCCCCCTTTT+TGG - chr1_3:66827328-66827347 Msa0135200:intron 45.0%
!!! CCCTTTTTGGTTATCGGAGA+AGG - chr1_3:66827341-66827360 Msa0135200:intron 45.0%
CAAGCAGACCGGATAAAACT+AGG + chr1_3:66827372-66827391 None:intergenic 45.0%
!!! CTAGTTTTATCCGGTCTGCT+TGG - chr1_3:66827370-66827389 Msa0135200:intron 45.0%
AGTAACCTCACATAGGTGGT+AGG + chr1_3:66827597-66827616 None:intergenic 45.0%
GTTCAGTAACCTCACATAGG+TGG + chr1_3:66827601-66827620 None:intergenic 45.0%
AGGAGAAGACAAAGCTGTAG+AGG + chr1_3:66827939-66827958 None:intergenic 45.0%
! CTGTGTCTGAAGCACAAAGA+AGG + chr1_3:66827959-66827978 None:intergenic 45.0%
! TGGTGAGTCACAAAGCACTT+CGG - chr1_3:66828158-66828177 Msa0135200:intron 45.0%
GATCTCTTCAGTCCTTATGC+TGG - chr1_3:66828181-66828200 Msa0135200:intron 45.0%
TCTCTTCAGTCCTTATGCTG+GGG - chr1_3:66828183-66828202 Msa0135200:intron 45.0%
ATTGTGAGCTCCTACTTCAG+CGG - chr1_3:66828225-66828244 Msa0135200:intron 45.0%
GGGTCTTTGTTGGATGCATA+TGG - chr1_3:66828246-66828265 Msa0135200:intron 45.0%
CTACACTTGGTACAGCAAGA+GGG - chr1_3:66828441-66828460 Msa0135200:intron 45.0%
! GGCAAACCTTTTCATTTGCC+AGG - chr1_3:66828462-66828481 Msa0135200:intron 45.0%
! ATTTGCCAGGCCTGAGTTTT+TGG - chr1_3:66828475-66828494 Msa0135200:intron 45.0%
ACTTTCCAAAAACTCAGGCC+TGG + chr1_3:66828483-66828502 None:intergenic 45.0%
! AACATAGCGGAGTCAGAATG+CGG + chr1_3:66828596-66828615 None:intergenic 45.0%
TGATGTGTATTGAGAGGACG+TGG + chr1_3:66828666-66828685 None:intergenic 45.0%
! GGTTTTACCCCCGAGTTTTT+AGG - chr1_3:66828732-66828751 Msa0135200:intron 45.0%
TGACACGTCCTAAAAACTCG+GGG + chr1_3:66828743-66828762 None:intergenic 45.0%
!! ATTGCATCTCTGCTTGGTGT+TGG - chr1_3:66828777-66828796 Msa0135200:intron 45.0%
ACCATCTTAGGTTCTGCTCT+TGG - chr1_3:66828855-66828874 Msa0135200:intron 45.0%
CCATCTTAGGTTCTGCTCTT+GGG - chr1_3:66828856-66828875 Msa0135200:intron 45.0%
ACTGGACTAAACCGGAAGTT+TGG - chr1_3:66828995-66829014 Msa0135200:intron 45.0%
! AGCGATGAGTGGTTTGCAAT+TGG - chr1_3:66829022-66829041 Msa0135200:intron 45.0%
AAGAAAAACGGGGAAGGCTA+GGG - chr1_3:66829578-66829597 Msa0135200:intron 45.0%
GCTAGGGTAACTAGCTGAAT+TGG - chr1_3:66829594-66829613 Msa0135200:intron 45.0%
ATTTAGCTGTGGTCCCATAC+TGG - chr1_3:66829758-66829777 Msa0135200:intron 45.0%
!! GCAATTTTAGTGGTGACCGT+AGG - chr1_3:66829872-66829891 Msa0135200:intron 45.0%
CCGTTATACAGCCAACTTAG+TGG - chr1_3:66829929-66829948 Msa0135200:intron 45.0%
AAACAGTTCCGCCACTAAGT+TGG + chr1_3:66829943-66829962 None:intergenic 45.0%
GGCGGAACTGTTTAGTAAAG+AGG - chr1_3:66829950-66829969 Msa0135200:intron 45.0%
TAGTAAAGAGGTTGGGACTC+TGG - chr1_3:66829962-66829981 Msa0135200:intron 45.0%
TAATTTCAGCTGCTTGGCAC+AGG - chr1_3:66830057-66830076 Msa0135200:intron 45.0%
TCAGTCGGTCCATCAGATTT+GGG + chr1_3:66830108-66830127 None:intergenic 45.0%
TTCAGTCGGTCCATCAGATT+TGG + chr1_3:66830109-66830128 None:intergenic 45.0%
! TACTTCAGGTGTTTTGCGTC+AGG - chr1_3:66830152-66830171 Msa0135200:intron 45.0%
TGTCATACCAACAGGCATGT+GGG + chr1_3:66830237-66830256 None:intergenic 45.0%
TGGTATGACACAGTTTGAGG+TGG - chr1_3:66830247-66830266 Msa0135200:intron 45.0%
CTCAGCTTAAAAGAGCAGTG+TGG - chr1_3:66830577-66830596 Msa0135200:intron 45.0%
CAGCTTAAAAGAGCAGTGTG+GGG - chr1_3:66830579-66830598 Msa0135200:intron 45.0%
TCTGGTAATTGCAGCTCAAC+AGG + chr1_3:66830611-66830630 None:intergenic 45.0%
TGTTGAGCTGCAATTACCAG+AGG - chr1_3:66830610-66830629 Msa0135200:intron 45.0%
GTTGAGCTGCAATTACCAGA+GGG - chr1_3:66830611-66830630 Msa0135200:intron 45.0%
ATTACCAGAGGGAATGGAAG+TGG - chr1_3:66830622-66830641 Msa0135200:intron 45.0%
GGCTGATCCTGAGTTTATGT+TGG - chr1_3:66830658-66830677 Msa0135200:intron 45.0%
AAAGTGGAAGGCCAAAACCT+TGG - chr1_3:66830727-66830746 Msa0135200:intron 45.0%
AGAACAACCACAGCCTATGT+TGG + chr1_3:66830797-66830816 None:intergenic 45.0%
AACATAGGCTGTGGTTGTTC+TGG - chr1_3:66830796-66830815 Msa0135200:CDS 45.0%
ACATAGGCTGTGGTTGTTCT+GGG - chr1_3:66830797-66830816 Msa0135200:CDS 45.0%
GCTAGGATAGCTTAATGACC+TGG - chr1_3:66830956-66830975 Msa0135200:CDS 45.0%
AACTTAAGACTCCACAGGGA+AGG + chr1_3:66831068-66831087 None:intergenic 45.0%
AAGCCAAGACAAGGCAATTG+GGG + chr1_3:66831156-66831175 None:intergenic 45.0%
CAAGCCAAGACAAGGCAATT+GGG + chr1_3:66831157-66831176 None:intergenic 45.0%
ACAAGCCAAGACAAGGCAAT+TGG + chr1_3:66831158-66831177 None:intergenic 45.0%
CTCAAAGACAAGCCAAGACA+AGG + chr1_3:66831165-66831184 None:intergenic 45.0%
!! CTTGTCTTGGCTTGTCTTTG+AGG - chr1_3:66831163-66831182 Msa0135200:CDS 45.0%
!! TGTCTTGGCTTGTCTTTGAG+GGG - chr1_3:66831165-66831184 Msa0135200:CDS 45.0%
! GGTTGGATTTTGTCCCACAT+CGG - chr1_3:66831186-66831205 Msa0135200:intron 45.0%
!! CAAAACCGGTTTGTAAGGTG+AGG + chr1_3:66831253-66831272 None:intergenic 45.0%
CGAGGGGCAAATCACAATTA+AGG + chr1_3:66831404-66831423 None:intergenic 45.0%
! AATTGTGATTTGCCCCTCGT+TGG - chr1_3:66831405-66831424 Msa0135200:CDS 45.0%
TTCAAAGACAAGCCAACGAG+GGG + chr1_3:66831420-66831439 None:intergenic 45.0%
CTTCAAAGACAAGCCAACGA+GGG + chr1_3:66831421-66831440 None:intergenic 45.0%
!! CTCGTTGGCTTGTCTTTGAA+GGG - chr1_3:66831420-66831439 Msa0135200:intron 45.0%
!! TCGTTGGCTTGTCTTTGAAG+GGG - chr1_3:66831421-66831440 Msa0135200:intron 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr1_3:66831530-66831549 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr1_3:66831527-66831546 Msa0135200:intron 45.0%
GGGCAAATCGCAATTAAGGT+GGG + chr1_3:66831644-66831663 None:intergenic 45.0%
AAGCCAACACAAGACAACGA+GGG + chr1_3:66831665-66831684 None:intergenic 45.0%
!! CTTGTGTTGGCTTGTCTTTG+AGG - chr1_3:66831672-66831691 Msa0135200:intron 45.0%
!! TGTGTTGGCTTGTCTTTGAG+GGG - chr1_3:66831674-66831693 Msa0135200:intron 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr1_3:66831530-66831549 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr1_3:66831527-66831546 Msa0135200:intron 45.0%
GGGGCAAATTGCAATTAAGG+TGG + chr1_3:66831854-66831873 None:intergenic 45.0%
CGAGGGGCAAATTGCAATTA+AGG + chr1_3:66831857-66831876 None:intergenic 45.0%
AAGCCAACACAAGACAACGA+GGG + chr1_3:66831665-66831684 None:intergenic 45.0%
!! CTTGTGTTGGCTTGTCTTTG+AGG - chr1_3:66831672-66831691 Msa0135200:intron 45.0%
!! TGTGTTGGCTTGTCTTTGAG+GGG - chr1_3:66831674-66831693 Msa0135200:intron 45.0%
GCGTCCTATCTAACCAATGT+GGG + chr1_3:66831920-66831939 None:intergenic 45.0%
AGCGTCCTATCTAACCAATG+TGG + chr1_3:66831921-66831940 None:intergenic 45.0%
CAAAACCGGATTGTAAGGTG+AGG + chr1_3:66831971-66831990 None:intergenic 45.0%
GTAAGGATGAGTTAGGCAGT+AGG - chr1_3:66831990-66832009 Msa0135200:intron 45.0%
AAGCCAACACAAGGCAACTA+GGG + chr1_3:66832017-66832036 None:intergenic 45.0%
CTCAAAGACAAGCCAACACA+AGG + chr1_3:66831674-66831693 None:intergenic 45.0%
!! CTTGTGTTGGCTTGTCTTTG+AGG - chr1_3:66831672-66831691 Msa0135200:intron 45.0%
!! TGTGTTGGCTTGTCTTTGAG+GGG - chr1_3:66831674-66831693 Msa0135200:intron 45.0%
! TAGTCCCACATCGGTTAGAT+AGG - chr1_3:66832056-66832075 Msa0135200:intron 45.0%
CAAAACCAGCTTGTAAGGTG+AGG + chr1_3:66832114-66832133 None:intergenic 45.0%
GTAAGGACGAGTTAGACGTT+AGG - chr1_3:66832133-66832152 Msa0135200:CDS 45.0%
GACCAAAACCAGAGAGAGAT+AGG + chr1_3:66832244-66832263 None:intergenic 45.0%
!! TGAAAGGCTTTAGAAGGTGG+TGG + chr1_3:66832268-66832287 None:intergenic 45.0%
!! TCTAATGGAGGGAGTGTTCT+TGG - chr1_3:66833125-66833144 Msa0135200:intron 45.0%
!! CTAATGGAGGGAGTGTTCTT+GGG - chr1_3:66833126-66833145 Msa0135200:intron 45.0%
!! TAATGGAGGGAGTGTTCTTG+GGG - chr1_3:66833127-66833146 Msa0135200:intron 45.0%
AGTGTTCTTGGGGGATTGAT+AGG - chr1_3:66833137-66833156 Msa0135200:intron 45.0%
TTACTGCCTCTACCACTTCT+TGG - chr1_3:66833245-66833264 Msa0135200:intron 45.0%
AGAAGACCAAGAAGTGGTAG+AGG + chr1_3:66833254-66833273 None:intergenic 45.0%
TCGTCCTTTGGATTTGCATC+AGG + chr1_3:66833290-66833309 None:intergenic 45.0%
TCGATTTCGGAATCGTCCTT+TGG + chr1_3:66833302-66833321 None:intergenic 45.0%
TACAAAGCTCGTGGATGTTC+TGG + chr1_3:66833674-66833693 None:intergenic 45.0%
!! TAATTATTTAAATTGAATTA+AGG + chr1_3:66825651-66825670 None:intergenic 5.0%
GATCGGCGAGGTGTAGAAAT+TGG + chr1_3:66825739-66825758 None:intergenic 50.0%
AATACCGCCGGAGAACTCAT+CGG - chr1_3:66825775-66825794 Msa0135200:three_prime_UTR 50.0%
TGTCGACCTCGGAATGATAC+CGG + chr1_3:66825823-66825842 None:intergenic 50.0%
GTCGATGTTGAGTCGGAAAG+CGG + chr1_3:66825847-66825866 None:intergenic 50.0%
CGCTATCGTCGATGTTGAGT+CGG + chr1_3:66825854-66825873 None:intergenic 50.0%
GCTCTGCTAAACAGTCTCAC+CGG - chr1_3:66826228-66826247 Msa0135200:CDS 50.0%
GGAAGCCTCTAGATCTGTCT+CGG + chr1_3:66826458-66826477 None:intergenic 50.0%
TCGCAACAGCAACAGTATCC+GGG + chr1_3:66826543-66826562 None:intergenic 50.0%
! GGATACTGTTGCTGTTGCGA+TGG - chr1_3:66826543-66826562 Msa0135200:intron 50.0%
TTTGCATCTGGATCCTGCTG+AGG - chr1_3:66826630-66826649 Msa0135200:intron 50.0%
GACTAGGCAGCTGTGATTTC+TGG - chr1_3:66827140-66827159 Msa0135200:intron 50.0%
CCACGGGGGAGATATAAGAT+GGG + chr1_3:66827270-66827289 None:intergenic 50.0%
TCCACGGGGGAGATATAAGA+TGG + chr1_3:66827271-66827290 None:intergenic 50.0%
TGCACTCTCATGGAGTCTGA+TGG - chr1_3:66827393-66827412 Msa0135200:intron 50.0%
! TAGGTGTGAGTTGGCATGCT+CGG + chr1_3:66827578-66827597 None:intergenic 50.0%
CATAGGTGGTAGGTGTGAGT+TGG + chr1_3:66827587-66827606 None:intergenic 50.0%
TCACACCTACCACCTATGTG+AGG - chr1_3:66827589-66827608 Msa0135200:intron 50.0%
! GGTGAGTCACAAAGCACTTC+GGG - chr1_3:66828159-66828178 Msa0135200:intron 50.0%
AGCTGAAGAACCCCAGCATA+AGG + chr1_3:66828196-66828215 None:intergenic 50.0%
! TGCTGGGGTTCTTCAGCTTT+TGG - chr1_3:66828198-66828217 Msa0135200:intron 50.0%
! TGGGGTTCTTCAGCTTTTGG+TGG - chr1_3:66828201-66828220 Msa0135200:intron 50.0%
TTGTGAGCTCCTACTTCAGC+GGG - chr1_3:66828226-66828245 Msa0135200:intron 50.0%
CAACAAAGACCCGCTGAAGT+AGG + chr1_3:66828238-66828257 None:intergenic 50.0%
CTACTTCAGCGGGTCTTTGT+TGG - chr1_3:66828236-66828255 Msa0135200:intron 50.0%
! CCTCTTGCTGTACCAAGTGT+AGG + chr1_3:66828443-66828462 None:intergenic 50.0%
CCTACACTTGGTACAGCAAG+AGG - chr1_3:66828440-66828459 Msa0135200:intron 50.0%
CTCAGGCCTGGCAAATGAAA+AGG + chr1_3:66828471-66828490 None:intergenic 50.0%
GACACGTCCTAAAAACTCGG+GGG + chr1_3:66828742-66828761 None:intergenic 50.0%
ACCTCGATTGCATCTCTGCT+TGG - chr1_3:66828771-66828790 Msa0135200:intron 50.0%
ACCAAGCAGAGATGCAATCG+AGG + chr1_3:66828775-66828794 None:intergenic 50.0%
CCCAAGAGCAGAACCTAAGA+TGG + chr1_3:66828859-66828878 None:intergenic 50.0%
TTCTGCTCTTGGGATGACTC+AGG - chr1_3:66828866-66828885 Msa0135200:intron 50.0%
GAAGAAAAACGGGGAAGGCT+AGG - chr1_3:66829577-66829596 Msa0135200:intron 50.0%
GGGTAACTAGCTGAATTGGC+AGG - chr1_3:66829598-66829617 Msa0135200:intron 50.0%
! CCTTAGCAGTTCAGCATTGG+CGG - chr1_3:66829700-66829719 Msa0135200:intron 50.0%
GGCTGTCATGCCAAAGTCAA+AGG - chr1_3:66829841-66829860 Msa0135200:intron 50.0%
TAAAGAGGTTGGGACTCTGG+AGG - chr1_3:66829965-66829984 Msa0135200:intron 50.0%
AACCAACAAGCTGGTCGATG+TGG - chr1_3:66830177-66830196 Msa0135200:intron 50.0%
CTGGTCGATGTGGCTTGATT+AGG - chr1_3:66830187-66830206 Msa0135200:intron 50.0%
TCGATGTGGCTTGATTAGGC+TGG - chr1_3:66830191-66830210 Msa0135200:intron 50.0%
GGCTTGATTAGGCTGGACTA+TGG - chr1_3:66830198-66830217 Msa0135200:intron 50.0%
GTGTCATACCAACAGGCATG+TGG + chr1_3:66830238-66830257 None:intergenic 50.0%
TCTGCAAGGGGAAATTCGAG+TGG - chr1_3:66830301-66830320 Msa0135200:intron 50.0%
GGAAATTCGAGTGGAAGCAG+CGG - chr1_3:66830310-66830329 Msa0135200:intron 50.0%
GCTGCAATTACCAGAGGGAA+TGG - chr1_3:66830616-66830635 Msa0135200:intron 50.0%
GGAAGTGGAGAGCAATGATG+AGG - chr1_3:66830637-66830656 Msa0135200:intron 50.0%
! GGTTGTTCTGGGCAGATGTT+AGG - chr1_3:66830808-66830827 Msa0135200:CDS 50.0%
ATGGGTGAGATCAAATGCCC+AGG - chr1_3:66830883-66830902 Msa0135200:intron 50.0%
GCGCTGAAAACCGTATTCAC+AGG - chr1_3:66830989-66831008 Msa0135200:CDS 50.0%
CAGGTGTTAATCTAGTGGGG+AGG - chr1_3:66831008-66831027 Msa0135200:CDS 50.0%
TGTTGGCAATTCCTTCCCTG+TGG - chr1_3:66831054-66831073 Msa0135200:CDS 50.0%
TTGGGGGCAGATCGCAATTA+AGG + chr1_3:66831139-66831158 None:intergenic 50.0%
AGCCAAGACAAGGCAATTGG+GGG + chr1_3:66831155-66831174 None:intergenic 50.0%
!! TTGGCTTGTCTTTGAGGGGT+TGG - chr1_3:66831169-66831188 Msa0135200:CDS 50.0%
! TTGTCCCACATCGGCTAGAT+AGG - chr1_3:66831195-66831214 Msa0135200:intron 50.0%
GAGTCCTATCTAGCCGATGT+GGG + chr1_3:66831202-66831221 None:intergenic 50.0%
AGAGTCCTATCTAGCCGATG+TGG + chr1_3:66831203-66831222 None:intergenic 50.0%
GCACTCCTCACCTTACAAAC+CGG - chr1_3:66831245-66831264 Msa0135200:intron 50.0%
AGCCTATCCAAGATCTACCG+TGG - chr1_3:66831312-66831331 Msa0135200:CDS 50.0%
GCCTATCCAAGATCTACCGT+GGG - chr1_3:66831313-66831332 Msa0135200:CDS 50.0%
CCTATCCAAGATCTACCGTG+GGG - chr1_3:66831314-66831333 Msa0135200:CDS 50.0%
CCTTCAAAGACAAGCCAACG+AGG + chr1_3:66831422-66831441 None:intergenic 50.0%
!! CCTCGTTGGCTTGTCTTTGA+AGG - chr1_3:66831419-66831438 Msa0135200:intron 50.0%
!! TTGGCTTGTCTTTGAAGGGG+TGG - chr1_3:66831424-66831443 Msa0135200:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr1_3:66831525-66831544 None:intergenic 50.0%
ACACTCCTCATCTCTACCGT+GGG - chr1_3:66831557-66831576 Msa0135200:intron 50.0%
GGGGCAAATCGCAATTAAGG+TGG + chr1_3:66831645-66831664 None:intergenic 50.0%
CGAGGGGCAAATCGCAATTA+AGG + chr1_3:66831648-66831667 None:intergenic 50.0%
AGCCAACACAAGACAACGAG+GGG + chr1_3:66831664-66831683 None:intergenic 50.0%
CAAGCCAACACAAGACAACG+AGG + chr1_3:66831666-66831685 None:intergenic 50.0%
!! GTGTTGGCTTGTCTTTGAGG+GGG - chr1_3:66831675-66831694 Msa0135200:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr1_3:66831525-66831544 None:intergenic 50.0%
ACACTCCTCATCTCTACCGT+GGG - chr1_3:66831557-66831576 Msa0135200:intron 50.0%
AGCCAACACAAGACAACGAG+GGG + chr1_3:66831664-66831683 None:intergenic 50.0%
CAAGCCAACACAAGACAACG+AGG + chr1_3:66831666-66831685 None:intergenic 50.0%
!! GTGTTGGCTTGTCTTTGAGG+GGG - chr1_3:66831675-66831694 Msa0135200:intron 50.0%
!! GGGTGGATTTTGTCCCACAT+TGG - chr1_3:66831904-66831923 Msa0135200:intron 50.0%
GCACTCCTCACCTTACAATC+CGG - chr1_3:66831963-66831982 Msa0135200:intron 50.0%
AGCCAACACAAGGCAACTAG+GGG + chr1_3:66832016-66832035 None:intergenic 50.0%
CAAGCCAACACAAGGCAACT+AGG + chr1_3:66832018-66832037 None:intergenic 50.0%
!! GTGTTGGCTTGTCTTTGAGG+GGG - chr1_3:66831675-66831694 Msa0135200:intron 50.0%
GGGTAGGTTTAGTCCCACAT+CGG - chr1_3:66832047-66832066 Msa0135200:intron 50.0%
GCGTCCTATCTAACCGATGT+GGG + chr1_3:66832063-66832082 None:intergenic 50.0%
AGCGTCCTATCTAACCGATG+TGG + chr1_3:66832064-66832083 None:intergenic 50.0%
CTTGCTGCTAGCACAAGAAC+AGG + chr1_3:66833053-66833072 None:intergenic 50.0%
AGCAGCAAGATTATGTCCCG+AGG - chr1_3:66833064-66833083 Msa0135200:CDS 50.0%
GCAGCAAGATTATGTCCCGA+GGG - chr1_3:66833065-66833084 Msa0135200:CDS 50.0%
CAGCAAGATTATGTCCCGAG+GGG - chr1_3:66833066-66833085 Msa0135200:CDS 50.0%
AAGATTATGTCCCGAGGGGA+TGG - chr1_3:66833070-66833089 Msa0135200:CDS 50.0%
!! AATGGAGGGAGTGTTCTTGG+GGG - chr1_3:66833128-66833147 Msa0135200:intron 50.0%
GCAGGCCTGACTCAAGTATT+TGG - chr1_3:66833161-66833180 Msa0135200:intron 50.0%
! CACTTCTTGGTCTTCTCCCT+GGG - chr1_3:66833258-66833277 Msa0135200:intron 50.0%
! ACTTCTTGGTCTTCTCCCTG+GGG - chr1_3:66833259-66833278 Msa0135200:intron 50.0%
TTGCATCAGGATTGTCCCCA+GGG + chr1_3:66833277-66833296 None:intergenic 50.0%
TTTGCATCAGGATTGTCCCC+AGG + chr1_3:66833278-66833297 None:intergenic 50.0%
GATGGTTTACAACAAGGCCC+TGG + chr1_3:66833489-66833508 None:intergenic 50.0%
GACAGATACCTTCTCCTTGG+TGG + chr1_3:66833648-66833667 None:intergenic 50.0%
AGGGACAGATACCTTCTCCT+TGG + chr1_3:66833651-66833670 None:intergenic 50.0%
! AAGCTCGTGGATGTTCTGGA+GGG + chr1_3:66833670-66833689 None:intergenic 50.0%
AAAGCTCGTGGATGTTCTGG+AGG + chr1_3:66833671-66833690 None:intergenic 50.0%
TGAGTTCTCCGGCGGTATTG+CGG + chr1_3:66825774-66825793 None:intergenic 55.0%
GATTCCGATGAGTTCTCCGG+CGG + chr1_3:66825782-66825801 None:intergenic 55.0%
GCGGATTCCGATGAGTTCTC+CGG + chr1_3:66825785-66825804 None:intergenic 55.0%
GAGAACTCATCGGAATCCGC+CGG - chr1_3:66825785-66825804 Msa0135200:three_prime_UTR 55.0%
AGAACTCATCGGAATCCGCC+GGG - chr1_3:66825786-66825805 Msa0135200:three_prime_UTR 55.0%
CGCAACAGCAACAGTATCCG+GGG + chr1_3:66826542-66826561 None:intergenic 55.0%
CCCATCTTATATCTCCCCCG+TGG - chr1_3:66827267-66827286 Msa0135200:intron 55.0%
! TGAGAGTGCACCAAGCAGAC+CGG + chr1_3:66827383-66827402 None:intergenic 55.0%
!! GTCTGCTTGGTGCACTCTCA+TGG - chr1_3:66827383-66827402 Msa0135200:intron 55.0%
GCAACGGCAGATGTTAGCAG+TGG + chr1_3:66828401-66828420 None:intergenic 55.0%
CCGCCAATGCTGAACTGCTA+AGG + chr1_3:66829703-66829722 None:intergenic 55.0%
GGTTGCACTTGAGAGCCCTA+CGG + chr1_3:66829891-66829910 None:intergenic 55.0%
! TTGGGACTCTGGAGGCTACA+TGG - chr1_3:66829973-66829992 Msa0135200:intron 55.0%
CGTCAGGACAACCAACAAGC+TGG - chr1_3:66830168-66830187 Msa0135200:intron 55.0%
AGCCACATCGACCAGCTTGT+TGG + chr1_3:66830182-66830201 None:intergenic 55.0%
ACCACTTCCCACATGCCTGT+TGG - chr1_3:66830227-66830246 Msa0135200:intron 55.0%
ACCAACAGGCATGTGGGAAG+TGG + chr1_3:66830231-66830250 None:intergenic 55.0%
CTCTCCACTTCCATTCCCTC+TGG + chr1_3:66830629-66830648 None:intergenic 55.0%
AGGGCAAAATGGGGAAGGCT+AGG - chr1_3:66830939-66830958 Msa0135200:CDS 55.0%
!! TTCAGCGCAACTGACTTGCC+AGG + chr1_3:66830977-66830996 None:intergenic 55.0%
GGGGCAGATCGCAATTAAGG+TGG + chr1_3:66831136-66831155 None:intergenic 55.0%
TGCCCCCAATTGCCTTGTCT+TGG - chr1_3:66831150-66831169 Msa0135200:CDS 55.0%
CCCCACGGTAGATCTTGGAT+AGG + chr1_3:66831317-66831336 None:intergenic 55.0%
GGAATCCCCACGGTAGATCT+TGG + chr1_3:66831322-66831341 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG - chr1_3:66831517-66831536 Msa0135200:intron 55.0%
GACACTCCTCATCTCTACCG+TGG - chr1_3:66831556-66831575 Msa0135200:intron 55.0%
CACTCCTCATCTCTACCGTG+GGG - chr1_3:66831558-66831577 Msa0135200:intron 55.0%
GAATCCCCACGGTAGAGATG+AGG + chr1_3:66831565-66831584 None:intergenic 55.0%
TGCCCCTCGTTGTCTTGTGT+TGG - chr1_3:66831659-66831678 Msa0135200:intron 55.0%
!! TTGGCTTGTCTTTGAGGGGG+TGG - chr1_3:66831678-66831697 Msa0135200:intron 55.0%
GCACTCCTCACCTTACAAGC+CGG - chr1_3:66831517-66831536 Msa0135200:intron 55.0%
GACACTCCTCATCTCTACCG+TGG - chr1_3:66831556-66831575 Msa0135200:intron 55.0%
CACTCCTCATCTCTACCGTG+GGG - chr1_3:66831558-66831577 Msa0135200:intron 55.0%
GAATCCCCACGGTAGAGATG+AGG + chr1_3:66831565-66831584 None:intergenic 55.0%
TGCCCCTCGTTGTCTTGTGT+TGG - chr1_3:66831659-66831678 Msa0135200:intron 55.0%
!! TTGGCTTGTCTTTGAGGGGG+TGG - chr1_3:66831678-66831697 Msa0135200:intron 55.0%
! TGGCTTGTCTTTGAGGGGGT+AGG - chr1_3:66831679-66831698 Msa0135200:intron 55.0%
GCACTCCTCACCTTACAAGC+TGG - chr1_3:66831517-66831536 Msa0135200:intron 55.0%
ATTATGTCCCGAGGGGATGG+AGG - chr1_3:66833073-66833092 Msa0135200:CDS 55.0%
AAGAGTTGCCTCCATCCCCT+CGG + chr1_3:66833084-66833103 None:intergenic 55.0%
CTTGGGGGATTGATAGGTGC+AGG - chr1_3:66833143-66833162 Msa0135200:intron 55.0%
CCAGGGAGAAGACCAAGAAG+TGG + chr1_3:66833260-66833279 None:intergenic 55.0%
! CCACTTCTTGGTCTTCTCCC+TGG - chr1_3:66833257-66833276 Msa0135200:intron 55.0%
GCAATCTCAAGGAAGGCCAG+TGG + chr1_3:66833354-66833373 None:intergenic 55.0%
ACGATGCTAAAGTTGCCGCC+AGG - chr1_3:66833468-66833487 Msa0135200:intron 55.0%
CGATGCTAAAGTTGCCGCCA+GGG - chr1_3:66833469-66833488 Msa0135200:intron 55.0%
GGTTTACAACAAGGCCCTGG+CGG + chr1_3:66833486-66833505 None:intergenic 55.0%
ATGCTAGCCAGTAGCCACCA+AGG - chr1_3:66833631-66833650 Msa0135200:intron 55.0%
! ACCTTCTCCTTGGTGGCTAC+TGG + chr1_3:66833641-66833660 None:intergenic 55.0%
CCGGACATTTCAGTTCCCGG+CGG + chr1_3:66825804-66825823 None:intergenic 60.0%
CCGCCGGGAACTGAAATGTC+CGG - chr1_3:66825801-66825820 Msa0135200:three_prime_UTR 60.0%
CGGAAAGCGGATGTCGACCT+CGG + chr1_3:66825834-66825853 None:intergenic 60.0%
! ATGGTTGTGGAAAGGGCGCG+TGG - chr1_3:66828138-66828157 Msa0135200:intron 60.0%
GTGGCAATGCGGAATCCCCA+CGG + chr1_3:66831332-66831351 None:intergenic 60.0%
TTGCCACGCTTCGTGCCCAT+TGG - chr1_3:66831345-66831364 Msa0135200:CDS 60.0%
TGCCACGCTTCGTGCCCATT+GGG - chr1_3:66831346-66831365 Msa0135200:CDS 60.0%
GTGGCAGTGCAGAATCCCCA+CGG + chr1_3:66831576-66831595 None:intergenic 60.0%
TGCCACGCTTCGTGCCCATT+GGG - chr1_3:66831346-66831365 Msa0135200:CDS 60.0%
GTGGCAGTGCAGAATCCCCA+CGG + chr1_3:66831576-66831595 None:intergenic 60.0%
TGCCACGCTTCGTGCCCATT+GGG - chr1_3:66831346-66831365 Msa0135200:CDS 60.0%
GGCCCCTAGTTGCCTTGTGT+TGG - chr1_3:66832011-66832030 Msa0135200:intron 60.0%
AGAGTTGCCTCCATCCCCTC+GGG + chr1_3:66833083-66833102 None:intergenic 60.0%
GCCAGTAGCCACCAAGGAGA+AGG - chr1_3:66833637-66833656 Msa0135200:intron 60.0%
TGCGGCGAACGAGCGACGAT+CGG + chr1_3:66825756-66825775 None:intergenic 65.0%
CTCGTTCGCCGCAATACCGC+CGG - chr1_3:66825763-66825782 Msa0135200:three_prime_UTR 65.0%
AAATCCCGCCCCGAGCGTGA+GGG - chr1_3:66831096-66831115 Msa0135200:CDS 65.0%
AACACACCCCCTCACGCTCG+GGG + chr1_3:66831107-66831126 None:intergenic 65.0%
CAACACACCCCCTCACGCTC+GGG + chr1_3:66831108-66831127 None:intergenic 65.0%
CCAACACACCCCCTCACGCT+CGG + chr1_3:66831109-66831128 None:intergenic 65.0%
GGGCACGAAGCGTGGCAATG+CGG + chr1_3:66831343-66831362 None:intergenic 65.0%
GACCCAATGGGCACGAAGCG+TGG + chr1_3:66831351-66831370 None:intergenic 65.0%
CCCTCACGCTCGGACCCAAT+GGG + chr1_3:66831363-66831382 None:intergenic 65.0%
CCCATTGGGTCCGAGCGTGA+GGG - chr1_3:66831360-66831379 Msa0135200:CDS 65.0%
CCATTGGGTCCGAGCGTGAG+GGG - chr1_3:66831361-66831380 Msa0135200:CDS 65.0%
CATTGGGTCCGAGCGTGAGG+GGG - chr1_3:66831362-66831381 Msa0135200:CDS 65.0%
CCAACACACCCCCTCACGCT+CGG + chr1_3:66831109-66831128 None:intergenic 65.0%
CTGCCACGCTTCGTGCCCAT+TGG - chr1_3:66831589-66831608 Msa0135200:intron 65.0%
GACCCAATGGGCACGAAGCG+TGG + chr1_3:66831351-66831370 None:intergenic 65.0%
CCCTCACGCACGGACCCAAT+GGG + chr1_3:66831607-66831626 None:intergenic 65.0%
CCCATTGGGTCCGTGCGTGA+GGG - chr1_3:66831604-66831623 Msa0135200:intron 65.0%
CCATTGGGTCCGTGCGTGAG+GGG - chr1_3:66831605-66831624 Msa0135200:intron 65.0%
CATTGGGTCCGTGCGTGAGG+GGG - chr1_3:66831606-66831625 Msa0135200:intron 65.0%
CCAACACACCCCCTCACGCA+CGG + chr1_3:66831617-66831636 None:intergenic 65.0%
CTGCCACGCTTCGTGCCCAT+TGG - chr1_3:66831589-66831608 Msa0135200:intron 65.0%
GACCCAATGGGCACGAAGCG+TGG + chr1_3:66831351-66831370 None:intergenic 65.0%
CCCTCACGCTCGGACCCAAT+GGG + chr1_3:66831363-66831382 None:intergenic 65.0%
CCCATTGGGTCCGAGCGTGA+GGG - chr1_3:66831360-66831379 Msa0135200:CDS 65.0%
CCATTGGGTCCGAGCGTGAG+GGG - chr1_3:66831361-66831380 Msa0135200:CDS 65.0%
CATTGGGTCCGAGCGTGAGG+GGG - chr1_3:66831362-66831381 Msa0135200:CDS 65.0%
CCAACACACCCCCTCACGCT+CGG + chr1_3:66831109-66831128 None:intergenic 65.0%
CGAACGAGCGACGATCGGCG+AGG + chr1_3:66825751-66825770 None:intergenic 70.0%
GAAATCCCGCCCCGAGCGTG+AGG - chr1_3:66831095-66831114 Msa0135200:CDS 70.0%
AATCCCGCCCCGAGCGTGAG+GGG - chr1_3:66831097-66831116 Msa0135200:CDS 70.0%
! CCGAGCGTGAGGGGGTGTGT+TGG - chr1_3:66831106-66831125 Msa0135200:CDS 70.0%
GCCCATTGGGTCCGAGCGTG+AGG - chr1_3:66831359-66831378 Msa0135200:CDS 70.0%
CCCCTCACGCTCGGACCCAA+TGG + chr1_3:66831364-66831383 None:intergenic 70.0%
! CCGAGCGTGAGGGGGTGTGT+TGG - chr1_3:66831106-66831125 Msa0135200:CDS 70.0%
GCCCATTGGGTCCGTGCGTG+AGG - chr1_3:66831603-66831622 Msa0135200:intron 70.0%
CCCCTCACGCACGGACCCAA+TGG + chr1_3:66831608-66831627 None:intergenic 70.0%
! CCGTGCGTGAGGGGGTGTGT+TGG - chr1_3:66831614-66831633 Msa0135200:intron 70.0%
GCCCATTGGGTCCGAGCGTG+AGG - chr1_3:66831359-66831378 Msa0135200:CDS 70.0%
CCCCTCACGCTCGGACCCAA+TGG + chr1_3:66831364-66831383 None:intergenic 70.0%
! CCGAGCGTGAGGGGGTGTGT+TGG - chr1_3:66831106-66831125 Msa0135200:CDS 70.0%
ATCCCGCCCCGAGCGTGAGG+GGG - chr1_3:66831098-66831117 Msa0135200:CDS 75.0%
ACACCCCCTCACGCTCGGGG+CGG + chr1_3:66831104-66831123 None:intergenic 75.0%
! CACCCCCTCACGCTCGGGGC+GGG + chr1_3:66831103-66831122 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 66825543 66834016 66825543 ID=Msa0135200;Name=Msa0135200
chr1_3 mRNA 66825543 66834016 66825543 ID=Msa0135200-mRNA-1;Parent=Msa0135200;Name=Msa0135200-mRNA-1;_AED=0.14;_eAED=0.14;_QI=141|0.87|0.88|1|1|1|9|679|522
chr1_3 exon 66825543 66826521 66825543 ID=Msa0135200-mRNA-1:exon:22867;Parent=Msa0135200-mRNA-1
chr1_3 exon 66830484 66830576 66830484 ID=Msa0135200-mRNA-1:exon:22866;Parent=Msa0135200-mRNA-1
chr1_3 exon 66830735 66830840 66830735 ID=Msa0135200-mRNA-1:exon:22865;Parent=Msa0135200-mRNA-1
chr1_3 exon 66830935 66831189 66830935 ID=Msa0135200-mRNA-1:exon:22864;Parent=Msa0135200-mRNA-1
chr1_3 exon 66831285 66831433 66831285 ID=Msa0135200-mRNA-1:exon:22863;Parent=Msa0135200-mRNA-1
chr1_3 exon 66832067 66832229 66832067 ID=Msa0135200-mRNA-1:exon:22862;Parent=Msa0135200-mRNA-1
chr1_3 exon 66832349 66832413 66832349 ID=Msa0135200-mRNA-1:exon:22861;Parent=Msa0135200-mRNA-1
chr1_3 exon 66832908 66833131 66832908 ID=Msa0135200-mRNA-1:exon:22860;Parent=Msa0135200-mRNA-1
chr1_3 exon 66833662 66834016 66833662 ID=Msa0135200-mRNA-1:exon:22859;Parent=Msa0135200-mRNA-1
chr1_3 five_prime_UTR 66833876 66834016 66833876 ID=Msa0135200-mRNA-1:five_prime_utr;Parent=Msa0135200-mRNA-1
chr1_3 CDS 66833662 66833875 66833662 ID=Msa0135200-mRNA-1:cds;Parent=Msa0135200-mRNA-1
chr1_3 CDS 66832908 66833131 66832908 ID=Msa0135200-mRNA-1:cds;Parent=Msa0135200-mRNA-1
chr1_3 CDS 66832349 66832413 66832349 ID=Msa0135200-mRNA-1:cds;Parent=Msa0135200-mRNA-1
chr1_3 CDS 66832067 66832229 66832067 ID=Msa0135200-mRNA-1:cds;Parent=Msa0135200-mRNA-1
chr1_3 CDS 66831285 66831433 66831285 ID=Msa0135200-mRNA-1:cds;Parent=Msa0135200-mRNA-1
chr1_3 CDS 66830935 66831189 66830935 ID=Msa0135200-mRNA-1:cds;Parent=Msa0135200-mRNA-1
chr1_3 CDS 66830735 66830840 66830735 ID=Msa0135200-mRNA-1:cds;Parent=Msa0135200-mRNA-1
chr1_3 CDS 66830484 66830576 66830484 ID=Msa0135200-mRNA-1:cds;Parent=Msa0135200-mRNA-1
chr1_3 CDS 66826222 66826521 66826222 ID=Msa0135200-mRNA-1:cds;Parent=Msa0135200-mRNA-1
chr1_3 three_prime_UTR 66825543 66826221 66825543 ID=Msa0135200-mRNA-1:three_prime_utr;Parent=Msa0135200-mRNA-1
Gene Sequence

>Msa0135200

ATGACTTGTGTTTATGTTTTGTCTTTAATACCGTTATTGCCCTCCAAATTTCCCAATTTCTACACCTCGCCGATCGTCGCTCGTTCGCCGCAATACCGCCGGAGAACTCATCGGAATCCGCCGGGAACTGAAATGTCCGGTATCATTCCGAGGTCGACATCCGCTTTCCGACTCAACATCGACGATAGCGACTCATTATTGGGTTCTAGAACTGGTGCAGGAAAAGGCGATACGATAACAACCGAGACAGATCTAGAGGCTTCCTCTACTAGTAAAAATGCGCTTTGTAAAAACAGATATAGTACATTGTTTGGGATTGATCTATCCCCGGATACTGTTGCTGTTGCGATGGTATACTTTGTTCAAGGTGTTTTAGGACTAGCAAGGTTGGCTGTCAGTTTTTATTTAAAGGATGATTTGCATCTGGATCCTGCTGAGGCAGCTGTGATTTCTGGTATTTCTGCGTTTCCATGGCTTGTGAAACCTCTATATGGTTTTATTAGTGACTCTATCCCCCTTTTTGGTTATCGGAGAAGGTCATACCTAGTTTTATCCGGTCTGCTTGGTGCACTCTCATGGAGTCTGATGGCCACTTCTGTTGACAACAAATATAGTGCTGCTTTTTGCATACTTCTTGGATCTCTCTCTGTTGCTTTCTCGGATGTTGTTGTAGATTCAATGGTTGTGGAAAGGGCGCGTGGTGAGTCACAAAGCACTTCGGGATCTCTTCAGTCCTTATGCTGGGGTTCTTCAGCTTTTGGTGGAATTGTGAGCTCCTACTTCAGCGGGTCTTTGTTGGATGCATATGGAGTAAGGTTTGTTTTTGGTGTCACAGCATTGCTTCCACTGCTAACATCTGCCGTTGCTGTTCTTGTAAAAGAACAACCTACACTTGGTACAGCAAGAGGGCAAACCTTTTCATTTGCCAGGCCTGAGTTTTTGGAAAGTTCAAAACAGAGTATCATTCAGCTGTGGGTTTCTGTACGACAGCCTAGTATTTTTCTTCCCACATTATTTATTTTCTTGTGGCAAGCAACTCCGCATTCTGACTCCGCTATGTTCTACTTTACCACAAATTCTCTTGGTTTTACCCCCGAGTTTTTAGGACGTGTCAAGCTCGTTACCTCGATTGCATCTCTGCTTGGTGTTGGACTTTATAATGGATTTCTGAAGAATGTTTTACTGGTTACTGGACTAAACCGGAAGTTTGGAATAAGCGATGAGTGGTTTGCAATTGGCGATTCATTAATTCTCACTGTTTTGAGTCAGGCTTCTTTCATGCCTGTTCTTGTGCTAGCAGCAAGATTATGTCCCGAGGGGATGGAGGCAACTCTTTTTGCAACTCTCATGTCTGTATCTAATGGAGGGAGTGTTCTTGGGGGATTGATAGGTGCAGGCCTGACTCAAGTATTTGGAATTACCAAGGACAAATTTGATAACTTGGCAGCTTTGATAATCCTCTGCAATCTTAGCTCATTACTGCCTCTACCACTTCTTGGTCTTCTCCCTGGGGACAATCCTGATGCAAATCCAAAGGACGATTCCGAAATCGAGATGAAGTCTAATTGA
Protein sequence

>Msa0135200

MTCVYVLSLIPLLPSKFPNFYTSPIVARSPQYRRRTHRNPPGTEMSGIIPRSTSAFRLNIDDSDSLLGSRTGAGKGDTITTETDLEASSTSKNALCKNRYSTLFGIDLSPDTVAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAEAAVISGISAFPWLVKPLYGFISDSIPLFGYRRRSYLVLSGLLGALSWSLMATSVDNKYSAAFCILLGSLSVAFSDVVVDSMVVERARGESQSTSGSLQSLCWGSSAFGGIVSSYFSGSLLDAYGVRFVFGVTALLPLLTSAVAVLVKEQPTLGTARGQTFSFARPEFLESSKQSIIQLWVSVRQPSIFLPTLFIFLWQATPHSDSAMFYFTTNSLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKNVLLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSVSNGGSVLGGLIGAGLTQVFGITKDKFDNLAALIILCNLSSLLPLPLLGLLPGDNPDANPKDDSEIEMKSN*