Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373470 | ACJ85662.1 | 35.610 | 205 | 129 | 2 | 1 | 205 | 31 | 232 | 3.24e-18 | 92.8 |
| Msa1373470 | ACJ85662.1 | 99.563 | 229 | 1 | 0 | 1 | 229 | 103 | 331 | 2.98e-153 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373470 | sp|Q8BID8|FXL14_MOUSE | 33.482 | 224 | 124 | 13 | 1 | 202 | 168 | 388 | 9.55e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373470 | B7FLM8 | 35.610 | 205 | 129 | 2 | 1 | 205 | 31 | 232 | 1.55e-18 | 92.8 |
| Msa1373470 | B7FLM8 | 99.563 | 229 | 1 | 0 | 1 | 229 | 103 | 331 | 1.43e-153 | 439 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0234050 | Msa1373470 | 0.806429 | 8.261759e-50 | -8.615850e-47 |
| Msa1215750 | Msa1373470 | 0.923690 | 1.905273e-89 | -8.615850e-47 |
| Msa0542260 | Msa1373470 | 0.800235 | 1.585338e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373470 | MtrunA17_Chr4g0064941 | 99.563 | 229 | 1 | 0 | 1 | 229 | 348 | 576 | 2.58e-153 | 437 |
| Msa1373470 | MtrunA17_Chr4g0064941 | 35.610 | 205 | 129 | 2 | 1 | 205 | 276 | 477 | 7.39e-22 | 93.6 |
| Msa1373470 | MtrunA17_Chr4g0064941 | 30.000 | 230 | 135 | 3 | 11 | 215 | 189 | 417 | 3.65e-18 | 82.8 |
| Msa1373470 | MtrunA17_Chr4g0064941 | 34.132 | 167 | 90 | 5 | 55 | 210 | 135 | 292 | 4.35e-15 | 73.9 |
| Msa1373470 | MtrunA17_Chr4g0003031 | 70.306 | 229 | 68 | 0 | 1 | 229 | 349 | 577 | 3.92e-101 | 304 |
| Msa1373470 | MtrunA17_Chr4g0003031 | 32.547 | 212 | 139 | 4 | 7 | 215 | 160 | 370 | 2.80e-21 | 91.7 |
| Msa1373470 | MtrunA17_Chr4g0003031 | 29.730 | 222 | 122 | 7 | 5 | 223 | 114 | 304 | 1.27e-13 | 69.3 |
| Msa1373470 | MtrunA17_Chr8g0388071 | 34.225 | 187 | 112 | 6 | 3 | 187 | 86 | 263 | 1.54e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373470 | AT1G15740.1 | 72.926 | 229 | 62 | 0 | 1 | 229 | 357 | 585 | 1.18e-96 | 293 |
| Msa1373470 | AT1G15740.1 | 31.780 | 236 | 128 | 7 | 2 | 207 | 138 | 370 | 5.07e-18 | 82.8 |
| Msa1373470 | AT1G15740.1 | 33.641 | 217 | 141 | 3 | 1 | 215 | 211 | 426 | 1.12e-16 | 79.0 |
| Msa1373470 | AT1G15740.1 | 38.509 | 161 | 92 | 5 | 55 | 210 | 143 | 301 | 7.95e-15 | 73.6 |
| Msa1373470 | AT4G23840.1 | 31.658 | 199 | 94 | 5 | 4 | 162 | 299 | 495 | 2.86e-11 | 63.2 |
Find 56 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCGAAAGCTTATCAAATT+TGG | 0.143186 | tig0019439:-4897 | None:intergenic |
| TATCTGTCAATTTGCAATTC+TGG | 0.168982 | tig0019439:-4242 | None:intergenic |
| TTTGACAGGTTTAACAAAAT+TGG | 0.169661 | tig0019439:+230 | None:intergenic |
| CTCGATCACCTGGTCTATTC+TGG | 0.204590 | tig0019439:-4918 | None:intergenic |
| AAAAGTGACTTTACAGTTAT+AGG | 0.206245 | tig0019439:+5043 | Msa1373470:three_prime_UTR |
| TTGATAACATTGGATCTCTT+TGG | 0.281225 | tig0019439:+3448 | Msa1373470:CDS |
| AAAATTGGAGTATTTGAATC+TGG | 0.313739 | tig0019439:+245 | Msa1373470:CDS |
| ATCTGTCAATTTGCAATTCT+GGG | 0.314315 | tig0019439:-4241 | None:intergenic |
| TAACTGATAATGGCCTAAAA+AGG | 0.330485 | tig0019439:+1314 | Msa1373470:CDS |
| AAATCTTAAATCACTTAATC+TGG | 0.338919 | tig0019439:+1351 | Msa1373470:CDS |
| ATCTGGATTCTTGCCAGATC+GGG | 0.348051 | tig0019439:+262 | Msa1373470:CDS |
| TCTGTACATACCTACTGTTT+TGG | 0.361636 | tig0019439:+4976 | Msa1373470:three_prime_UTR |
| CACATATCTCAAGGGATTGC+AGG | 0.397014 | tig0019439:-4149 | None:intergenic |
| TTCACCTCAGTAACTGATAA+TGG | 0.400145 | tig0019439:+1304 | Msa1373470:CDS |
| AAATTTACGCACTCTTTCCT+TGG | 0.431091 | tig0019439:+4821 | Msa1373470:CDS |
| AGCGGGATTCGATATATATC+AGG | 0.436160 | tig0019439:+462 | Msa1373470:CDS |
| CAAGTCCTTCATCCCCGATC+TGG | 0.445820 | tig0019439:-275 | None:intergenic |
| TGATAAAGACATTGTTGCTC+TGG | 0.448952 | tig0019439:-5161 | None:intergenic |
| GAAGGACTTGTGAATTTGAC+AGG | 0.449523 | tig0019439:+288 | Msa1373470:CDS |
| AATTCTCGTGTAACAAATGA+AGG | 0.455834 | tig0019439:+4774 | Msa1373470:CDS |
| GAAAGTTTGTGCATATGAAT+TGG | 0.460503 | tig0019439:+5221 | Msa1373470:three_prime_UTR |
| AAAACTCTGGAATTAATCTC+TGG | 0.466687 | tig0019439:+4264 | Msa1373470:CDS |
| ACAGATAACTGATGCTGGAT+TGG | 0.471355 | tig0019439:+1381 | Msa1373470:CDS |
| AATTTGGAAGATCAGTTGAA+TGG | 0.473738 | tig0019439:-4881 | None:intergenic |
| AATCTGGATTCTTGCCAGAT+CGG | 0.478857 | tig0019439:+261 | Msa1373470:CDS |
| TCAATTTGCAATTCTGGGAA+AGG | 0.481116 | tig0019439:-4236 | None:intergenic |
| TCTTTCCTTGGAGTCTTGCA+AGG | 0.481679 | tig0019439:+4833 | Msa1373470:CDS |
| TCTTGCCAGATCGGGGATGA+AGG | 0.485215 | tig0019439:+270 | Msa1373470:CDS |
| TAGTTCCAGAGTCAGTAATA+CGG | 0.502622 | tig0019439:-3474 | None:intergenic |
| TTGTCCAGGTTTAAACAAGC+TGG | 0.514004 | tig0019439:+1264 | Msa1373470:intron |
| TGTTGTCTGACACTGAAGTC+GGG | 0.528592 | tig0019439:+436 | Msa1373470:CDS |
| AGAAAATTCTGCTCTTTGCA+CGG | 0.536987 | tig0019439:+4939 | Msa1373470:three_prime_UTR |
| GCTCGACAGATAACTGATGC+TGG | 0.537912 | tig0019439:+1376 | Msa1373470:CDS |
| CAAATTGACAGATAAAACTC+TGG | 0.546445 | tig0019439:+4251 | Msa1373470:CDS |
| CTTCAGTGTCAGACAACACT+AGG | 0.549300 | tig0019439:-431 | None:intergenic |
| ACACTGAAGTCGGGAACAGC+GGG | 0.563185 | tig0019439:+445 | Msa1373470:CDS |
| TAAGATTAATTGAAGATGAG+AGG | 0.571138 | tig0019439:+5011 | Msa1373470:three_prime_UTR |
| AGTTCCAGAGTCAGTAATAC+GGG | 0.571326 | tig0019439:-3473 | None:intergenic |
| ATAATCCACCACATATCTCA+AGG | 0.573061 | tig0019439:-4158 | None:intergenic |
| TTATAATTATCCAAAACAGT+AGG | 0.577374 | tig0019439:-4986 | None:intergenic |
| ATTGACCTTGCAAGACTCCA+AGG | 0.594308 | tig0019439:-4838 | None:intergenic |
| GTGTTGTCTGACACTGAAGT+CGG | 0.600409 | tig0019439:+435 | Msa1373470:CDS |
| GGTGGATTATTAACTGATGC+AGG | 0.602912 | tig0019439:+4171 | Msa1373470:CDS |
| CTGCAATCCCTTGAGATATG+TGG | 0.609218 | tig0019439:+4150 | Msa1373470:CDS |
| GGAAAGGTTTAGCTGTGTCA+AGG | 0.612583 | tig0019439:-4220 | None:intergenic |
| TCTGAGTGGATTGATAACAT+TGG | 0.618036 | tig0019439:+3438 | Msa1373470:CDS |
| GACACTGAAGTCGGGAACAG+CGG | 0.618186 | tig0019439:+444 | Msa1373470:CDS |
| TAGGCCATTATCAGTTACTG+AGG | 0.624623 | tig0019439:-1308 | None:intergenic |
| TCTGGATTCTTGCCAGATCG+GGG | 0.638042 | tig0019439:+263 | Msa1373470:CDS |
| TAATCCACCACATATCTCAA+GGG | 0.643788 | tig0019439:-4157 | None:intergenic |
| CAATCCCTTGAGATATGTGG+TGG | 0.662022 | tig0019439:+4153 | Msa1373470:CDS |
| GCTTTCGACCAGAATAGACC+AGG | 0.666065 | tig0019439:+4910 | Msa1373470:exon |
| GTGTTCTGTATAGGTCTGAG+TGG | 0.686367 | tig0019439:+3424 | Msa1373470:intron |
| GTGTAACAAATGAAGGACTG+CGG | 0.737810 | tig0019439:+4781 | Msa1373470:CDS |
| GGAGTCTTGCAAGGTCAATG+CGG | 0.748537 | tig0019439:+4842 | Msa1373470:CDS |
| ATGCAGGAATGACTGCACTG+AGG | 0.826458 | tig0019439:+4736 | Msa1373470:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAATAACAAAAAATAAA+AGG | - | tig0019439:1608-1627 | None:intergenic | 10.0% |
| !!! | TATTTTTTCGTTTTTATTTT+GGG | - | tig0019439:3892-3911 | None:intergenic | 10.0% |
| !!! | TTATTTTTTCGTTTTTATTT+TGG | - | tig0019439:3893-3912 | None:intergenic | 10.0% |
| !! | TTGTCAAAAAAAAAAAAAAA+AGG | - | tig0019439:4064-4083 | None:intergenic | 10.0% |
| !!! | TTTTTAGTTATTTTTCTTTC+AGG | + | tig0019439:390-409 | Msa1373470:intron | 15.0% |
| !!! | GACATTTTTAATTTGATTTA+AGG | + | tig0019439:883-902 | Msa1373470:intron | 15.0% |
| !!! | TTCTTGTTATAGTTTTTTTT+TGG | + | tig0019439:909-928 | Msa1373470:intron | 15.0% |
| !! | TTCTTTGTCTATTTATAAAT+GGG | + | tig0019439:964-983 | Msa1373470:intron | 15.0% |
| !!! | GAAAAGCATATATTTATAAA+GGG | - | tig0019439:1139-1158 | None:intergenic | 15.0% |
| !!! | TGAAAAGCATATATTTATAA+AGG | - | tig0019439:1140-1159 | None:intergenic | 15.0% |
| !! | GATACTTAGAAATAAATAAT+CGG | - | tig0019439:1849-1868 | None:intergenic | 15.0% |
| !! | AAAAACGAAAAAATAATTTG+AGG | + | tig0019439:3897-3916 | Msa1373470:intron | 15.0% |
| !!! | TATCTACAATTATTTTTAGA+CGG | - | tig0019439:5114-5133 | None:intergenic | 15.0% |
| !!! | TTCTGAATATCTAAGATTTT+AGG | + | tig0019439:326-345 | Msa1373470:intron | 20.0% |
| !! | TGTGTTTCATATAATATGAT+TGG | + | tig0019439:631-650 | Msa1373470:intron | 20.0% |
| !! | CTTCTTTGTCTATTTATAAA+TGG | + | tig0019439:963-982 | Msa1373470:intron | 20.0% |
| !!! | ATTTTAATGCATGTCTTAAT+TGG | + | tig0019439:1232-1251 | Msa1373470:intron | 20.0% |
| !! | AAATCTTAAATCACTTAATC+TGG | + | tig0019439:1351-1370 | Msa1373470:CDS | 20.0% |
| !! | TCAATAATAAACCATTGATA+TGG | + | tig0019439:1548-1567 | Msa1373470:intron | 20.0% |
| !! | AAACAACTAACTTATTGTAT+TGG | + | tig0019439:1910-1929 | Msa1373470:intron | 20.0% |
| !! | TTGTAAAGATTAATTGATAG+TGG | - | tig0019439:2471-2490 | None:intergenic | 20.0% |
| !!! | TTGCATCTAAAATTTAAAAC+AGG | - | tig0019439:3177-3196 | None:intergenic | 20.0% |
| !!! | TGAACACTAATTTGAAATAA+TGG | + | tig0019439:4000-4019 | Msa1373470:intron | 20.0% |
| !!! | GAACACTAATTTGAAATAAT+GGG | + | tig0019439:4001-4020 | Msa1373470:intron | 20.0% |
| !! | TTATAATTATCCAAAACAGT+AGG | - | tig0019439:4989-5008 | None:intergenic | 20.0% |
| !!! | ATCTACAATTATTTTTAGAC+GGG | - | tig0019439:5113-5132 | None:intergenic | 20.0% |
| !!! | AGTAATTTTTCAATTGTACA+AGG | + | tig0019439:5194-5213 | Msa1373470:three_prime_UTR | 20.0% |
| !! | AAAATTGGAGTATTTGAATC+TGG | + | tig0019439:245-264 | Msa1373470:CDS | 25.0% |
| ! | AACAATCAGTGTGAATTTAT+TGG | + | tig0019439:529-548 | Msa1373470:intron | 25.0% |
| !!! | ATAGTTTTTTTTTGGACCAA+AGG | + | tig0019439:917-936 | Msa1373470:intron | 25.0% |
| ! | ATTTATAAATGGGAAATGCT+AGG | + | tig0019439:974-993 | Msa1373470:intron | 25.0% |
| ! | TTTATAAATGGGAAATGCTA+GGG | + | tig0019439:975-994 | Msa1373470:intron | 25.0% |
| ! | CCAAATATAAAAAGACAAAC+AGG | - | tig0019439:1468-1487 | None:intergenic | 25.0% |
| !! | CCTGTTTGTCTTTTTATATT+TGG | + | tig0019439:1465-1484 | Msa1373470:intron | 25.0% |
| ! | CATTCAAAAGAAACAAGATA+GGG | - | tig0019439:1670-1689 | None:intergenic | 25.0% |
| ! | TCATTCAAAAGAAACAAGAT+AGG | - | tig0019439:1671-1690 | None:intergenic | 25.0% |
| ! | GAGCATATGAAAATAAAGAA+GGG | - | tig0019439:1785-1804 | None:intergenic | 25.0% |
| ! | ACTAACTTATTGTATTGGAT+TGG | + | tig0019439:1915-1934 | Msa1373470:intron | 25.0% |
| !! | TGGTTGATATTATTGTTGAT+TGG | - | tig0019439:2297-2316 | None:intergenic | 25.0% |
| !! | ACTCTTTTTATCATGTTCTT+TGG | - | tig0019439:2368-2387 | None:intergenic | 25.0% |
| ! | TACAAGAGATAAAAAAGAGT+CGG | + | tig0019439:2486-2505 | Msa1373470:intron | 25.0% |
| ! | TGAGTAATAATGAGAATACT+CGG | + | tig0019439:3667-3686 | Msa1373470:intron | 25.0% |
| !!! | AAACTTTAAAACTGCTAAAC+TGG | + | tig0019439:3842-3861 | Msa1373470:intron | 25.0% |
| ! | AAACTGGACAAACAAATAAA+TGG | + | tig0019439:3858-3877 | Msa1373470:intron | 25.0% |
| ! | CAAATAATGAAAAAGTAAGC+TGG | - | tig0019439:3951-3970 | None:intergenic | 25.0% |
| !! | TCATTATTTGTCATTTCGTT+TGG | + | tig0019439:3961-3980 | Msa1373470:intron | 25.0% |
| !! | TTCATGTTGACTGTTAATTA+AGG | + | tig0019439:4428-4447 | Msa1373470:intron | 25.0% |
| ! | AGTTATTGTATATGTGCAAA+AGG | + | tig0019439:4489-4508 | Msa1373470:intron | 25.0% |
| ! | TAAGATTAATTGAAGATGAG+AGG | + | tig0019439:5011-5030 | Msa1373470:three_prime_UTR | 25.0% |
| ! | AAAAGTGACTTTACAGTTAT+AGG | + | tig0019439:5043-5062 | Msa1373470:three_prime_UTR | 25.0% |
| AGATATTCAGAAGAAGAAAG+CGG | - | tig0019439:318-337 | None:intergenic | 30.0% | |
| !! | GATTTTAGGAGTCCAATATT+TGG | + | tig0019439:340-359 | Msa1373470:intron | 30.0% |
| CATACTTCCAATCCAAATAT+TGG | - | tig0019439:355-374 | None:intergenic | 30.0% | |
| ! | ATTCTCATTTGATAGCTACA+GGG | - | tig0019439:501-520 | None:intergenic | 30.0% |
| ! | AATTCTCATTTGATAGCTAC+AGG | - | tig0019439:502-521 | None:intergenic | 30.0% |
| TATACTAGAAGTTGTCAACA+TGG | - | tig0019439:681-700 | None:intergenic | 30.0% | |
| ! | AATTGACATTTTGTGCGTTA+TGG | + | tig0019439:703-722 | Msa1373470:intron | 30.0% |
| !! | AATAATTTGCTAATCTGCCT+AGG | + | tig0019439:842-861 | Msa1373470:intron | 30.0% |
| ACTGTAAAAAGAAATGCCTT+TGG | - | tig0019439:936-955 | None:intergenic | 30.0% | |
| !! | TAACTGATAATGGCCTAAAA+AGG | + | tig0019439:1314-1333 | Msa1373470:CDS | 30.0% |
| ! | ATCGTTTTGTATATGTACAG+AGG | + | tig0019439:1501-1520 | Msa1373470:intron | 30.0% |
| ! | TCGTTTTGTATATGTACAGA+GGG | + | tig0019439:1502-1521 | Msa1373470:intron | 30.0% |
| AAAATAATCGGTCAGATTCT+GGG | - | tig0019439:1574-1593 | None:intergenic | 30.0% | |
| AAAAATAATCGGTCAGATTC+TGG | - | tig0019439:1575-1594 | None:intergenic | 30.0% | |
| GTCAAAAGTGATCATAAAGA+GGG | - | tig0019439:1728-1747 | None:intergenic | 30.0% | |
| AGTCAAAAGTGATCATAAAG+AGG | - | tig0019439:1729-1748 | None:intergenic | 30.0% | |
| GGAGCATATGAAAATAAAGA+AGG | - | tig0019439:1786-1805 | None:intergenic | 30.0% | |
| !!! | TTCATATGCTCCATTTTTTC+TGG | + | tig0019439:1794-1813 | Msa1373470:intron | 30.0% |
| !!! | TCATATGCTCCATTTTTTCT+GGG | + | tig0019439:1795-1814 | Msa1373470:intron | 30.0% |
| ! | ATCAACTCAAGTGCTTTATT+GGG | + | tig0019439:1938-1957 | Msa1373470:intron | 30.0% |
| !! | CTGAAGAAGTGTTTATAAGT+AGG | - | tig0019439:2179-2198 | None:intergenic | 30.0% |
| !! | ATAGGTTCTAGATTTGTTCA+TGG | - | tig0019439:2317-2336 | None:intergenic | 30.0% |
| GAACATGATAAAAAGAGTAG+AGG | + | tig0019439:2370-2389 | Msa1373470:intron | 30.0% | |
| !! | AAGATTAATTGATAGTGGAG+TGG | - | tig0019439:2466-2485 | None:intergenic | 30.0% |
| ! | CTTTTGTACTGCAATTTCAT+TGG | - | tig0019439:2616-2635 | None:intergenic | 30.0% |
| CAATGAAATTGCAGTACAAA+AGG | + | tig0019439:2614-2633 | Msa1373470:intron | 30.0% | |
| CGGATATGGTATAAAATAAC+AGG | - | tig0019439:2762-2781 | None:intergenic | 30.0% | |
| !! | AGATTTAAGTTGAAGAAGAG+TGG | - | tig0019439:3046-3065 | None:intergenic | 30.0% |
| GATAAAATGCATTTCATGCA+GGG | - | tig0019439:3200-3219 | None:intergenic | 30.0% | |
| AGAGTAAAACTACCTTAGTT+TGG | - | tig0019439:3232-3251 | None:intergenic | 30.0% | |
| TTCAAATGCAACTTTCTGAT+TGG | + | tig0019439:3398-3417 | Msa1373470:intron | 30.0% | |
| ! | TTGATAACATTGGATCTCTT+TGG | + | tig0019439:3448-3467 | Msa1373470:CDS | 30.0% |
| !! | GTTGTTTTCCTTTGTTCATT+TGG | + | tig0019439:3538-3557 | Msa1373470:intron | 30.0% |
| AACATACACCAAATGAACAA+AGG | - | tig0019439:3549-3568 | None:intergenic | 30.0% | |
| TACTACAATTTACAGAGACA+TGG | - | tig0019439:3606-3625 | None:intergenic | 30.0% | |
| ! | AGAAGTGTAGACTAATTAGT+CGG | - | tig0019439:3635-3654 | None:intergenic | 30.0% |
| !! | CTAAAAATAGAAAGCACCAT+GGG | - | tig0019439:3698-3717 | None:intergenic | 30.0% |
| GTATTTGATGCCTATCATAT+GGG | + | tig0019439:3718-3737 | Msa1373470:intron | 30.0% | |
| ! | ACAAAAGCATAAAGTCATCT+TGG | + | tig0019439:4080-4099 | Msa1373470:intron | 30.0% |
| ATCTGTCAATTTGCAATTCT+GGG | - | tig0019439:4244-4263 | None:intergenic | 30.0% | |
| TATCTGTCAATTTGCAATTC+TGG | - | tig0019439:4245-4264 | None:intergenic | 30.0% | |
| CAAATTGACAGATAAAACTC+TGG | + | tig0019439:4251-4270 | Msa1373470:CDS | 30.0% | |
| !! | AAAACTCTGGAATTAATCTC+TGG | + | tig0019439:4264-4283 | Msa1373470:CDS | 30.0% |
| TTTGTTGAAAAGATGATGCA+AGG | - | tig0019439:4323-4342 | None:intergenic | 30.0% | |
| GTTATTTGCTCATGATCAAT+GGG | - | tig0019439:4554-4573 | None:intergenic | 30.0% | |
| AGTTATTTGCTCATGATCAA+TGG | - | tig0019439:4555-4574 | None:intergenic | 30.0% | |
| TTGATCATGAGCAAATAACT+AGG | + | tig0019439:4555-4574 | Msa1373470:intron | 30.0% | |
| TTTGTTTGATACCAACTATG+GGG | - | tig0019439:4667-4686 | None:intergenic | 30.0% | |
| ! | CTTTGTTTGATACCAACTAT+GGG | - | tig0019439:4668-4687 | None:intergenic | 30.0% |
| ! | TCTTTGTTTGATACCAACTA+TGG | - | tig0019439:4669-4688 | None:intergenic | 30.0% |
| ! | ATAGTTGGTATCAAACAAAG+AGG | + | tig0019439:4668-4687 | Msa1373470:intron | 30.0% |
| AATTCTCGTGTAACAAATGA+AGG | + | tig0019439:4774-4793 | Msa1373470:CDS | 30.0% | |
| !! | AGAGTGCGTAAATTTTTCAA+AGG | - | tig0019439:4816-4835 | None:intergenic | 30.0% |
| AATTTGGAAGATCAGTTGAA+TGG | - | tig0019439:4884-4903 | None:intergenic | 30.0% | |
| GAAAGTTTGTGCATATGAAT+TGG | + | tig0019439:5221-5240 | Msa1373470:three_prime_UTR | 30.0% | |
| TAGGAGTCCAATATTTGGAT+TGG | + | tig0019439:345-364 | Msa1373470:intron | 35.0% | |
| GGATTCGATATATATCAGGT+TGG | + | tig0019439:466-485 | Msa1373470:intron | 35.0% | |
| !! | TTCGATATATATCAGGTTGG+TGG | + | tig0019439:469-488 | Msa1373470:intron | 35.0% |
| AACATGGAAGCTGAATAACA+AGG | - | tig0019439:665-684 | None:intergenic | 35.0% | |
| !! | TTAGGGCAATTGACTTGTTA+AGG | - | tig0019439:1098-1117 | None:intergenic | 35.0% |
| TTAACAAGTCAATTGCCCTA+AGG | + | tig0019439:1097-1116 | Msa1373470:intron | 35.0% | |
| TAACAAGTCAATTGCCCTAA+GGG | + | tig0019439:1098-1117 | Msa1373470:intron | 35.0% | |
| ATCTCTAACAAGACATGATC+AGG | - | tig0019439:1199-1218 | None:intergenic | 35.0% | |
| ! | TGCATGTCTTAATTGGTTCT+TGG | + | tig0019439:1239-1258 | Msa1373470:intron | 35.0% |
| TTCACCTCAGTAACTGATAA+TGG | + | tig0019439:1304-1323 | Msa1373470:CDS | 35.0% | |
| TAATGGCCTAAAAAGGCTAT+CGG | + | tig0019439:1321-1340 | Msa1373470:CDS | 35.0% | |
| AAAGACATAGCAGATACACA+AGG | - | tig0019439:1429-1448 | None:intergenic | 35.0% | |
| AGAAACAAGATAGGGAACTT+TGG | - | tig0019439:1662-1681 | None:intergenic | 35.0% | |
| CCAAATAGCATGTGACAAAT+AGG | - | tig0019439:1890-1909 | None:intergenic | 35.0% | |
| CCTATTTGTCACATGCTATT+TGG | + | tig0019439:1887-1906 | Msa1373470:intron | 35.0% | |
| GATCAACTCAAGTGCTTTAT+TGG | + | tig0019439:1937-1956 | Msa1373470:intron | 35.0% | |
| ! | TCAACTCAAGTGCTTTATTG+GGG | + | tig0019439:1939-1958 | Msa1373470:intron | 35.0% |
| CAAACATCGTGTTTGTACAA+GGG | - | tig0019439:2007-2026 | None:intergenic | 35.0% | |
| TCAAACATCGTGTTTGTACA+AGG | - | tig0019439:2008-2027 | None:intergenic | 35.0% | |
| ATTGTCAGTTGAAGGTAAAC+AGG | - | tig0019439:2075-2094 | None:intergenic | 35.0% | |
| AAAAAGGGATTGTCAGTTGA+AGG | - | tig0019439:2083-2102 | None:intergenic | 35.0% | |
| TTGATTGAAACCTCAACAAC+TGG | - | tig0019439:2231-2250 | None:intergenic | 35.0% | |
| AGTTGTTGAGGTTTCAATCA+AGG | + | tig0019439:2230-2249 | Msa1373470:intron | 35.0% | |
| !! | GATTGGACTGTTTAGTTTGT+TGG | - | tig0019439:2280-2299 | None:intergenic | 35.0% |
| TAGAACCTATGTGTAAAGCA+AGG | + | tig0019439:2327-2346 | Msa1373470:intron | 35.0% | |
| TGTTTCCTTGCTTTACACAT+AGG | - | tig0019439:2335-2354 | None:intergenic | 35.0% | |
| ! | TCTTTGAGGGTTAAGAGAAA+GGG | - | tig0019439:2551-2570 | None:intergenic | 35.0% |
| ! | TTCTTTGAGGGTTAAGAGAA+AGG | - | tig0019439:2552-2571 | None:intergenic | 35.0% |
| TCTTGAGTGACTTTCTTTGA+GGG | - | tig0019439:2564-2583 | None:intergenic | 35.0% | |
| TTCTTGAGTGACTTTCTTTG+AGG | - | tig0019439:2565-2584 | None:intergenic | 35.0% | |
| TTGTACTGCAATTTCATTGG+AGG | - | tig0019439:2613-2632 | None:intergenic | 35.0% | |
| AGTACAAAAGGTCTTGAGAA+TGG | + | tig0019439:2626-2645 | Msa1373470:intron | 35.0% | |
| !! | ATAAGTCTCAAGGTGTTTTC+AGG | - | tig0019439:2835-2854 | None:intergenic | 35.0% |
| TAAGCACTCAATGCAGATAT+TGG | - | tig0019439:2987-3006 | None:intergenic | 35.0% | |
| ! | TAGCTAACTGCAATAGCTTT+TGG | - | tig0019439:3018-3037 | None:intergenic | 35.0% |
| AAAGCTATTGCAGTTAGCTA+AGG | + | tig0019439:3018-3037 | Msa1373470:intron | 35.0% | |
| GGATAAAATGCATTTCATGC+AGG | - | tig0019439:3201-3220 | None:intergenic | 35.0% | |
| !! | TACCTTAGTTTGGCTAGTTT+CGG | - | tig0019439:3222-3241 | None:intergenic | 35.0% |
| ! | GATCATTCTCCCTTTTTATG+AGG | + | tig0019439:3263-3282 | Msa1373470:intron | 35.0% |
| ! | TAGCTTGCACCTCATAAAAA+GGG | - | tig0019439:3275-3294 | None:intergenic | 35.0% |
| ! | ATAGCTTGCACCTCATAAAA+AGG | - | tig0019439:3276-3295 | None:intergenic | 35.0% |
| ! | TTTTATGAGGTGCAAGCTAT+AGG | + | tig0019439:3276-3295 | Msa1373470:intron | 35.0% |
| AGATTAATATGGACATCGAG+TGG | - | tig0019439:3331-3350 | None:intergenic | 35.0% | |
| ACAGCTCACACAGATTAATA+TGG | - | tig0019439:3342-3361 | None:intergenic | 35.0% | |
| !! | TCTGAGTGGATTGATAACAT+TGG | + | tig0019439:3438-3457 | Msa1373470:CDS | 35.0% |
| TAGTTCCAGAGTCAGTAATA+CGG | - | tig0019439:3477-3496 | None:intergenic | 35.0% | |
| !! | CCTAAAAATAGAAAGCACCA+TGG | - | tig0019439:3699-3718 | None:intergenic | 35.0% |
| !! | CCATGGTGCTTTCTATTTTT+AGG | + | tig0019439:3696-3715 | Msa1373470:intron | 35.0% |
| GGTATTTGATGCCTATCATA+TGG | + | tig0019439:3717-3736 | Msa1373470:intron | 35.0% | |
| ATGCCTATCATATGGGTATT+GGG | + | tig0019439:3725-3744 | Msa1373470:intron | 35.0% | |
| GCATGTGTCTACATAATCTT+CGG | + | tig0019439:4027-4046 | Msa1373470:intron | 35.0% | |
| AACGCTGCAAGATTCAAAAA+AGG | - | tig0019439:4123-4142 | None:intergenic | 35.0% | |
| TAATCCACCACATATCTCAA+GGG | - | tig0019439:4160-4179 | None:intergenic | 35.0% | |
| ATAATCCACCACATATCTCA+AGG | - | tig0019439:4161-4180 | None:intergenic | 35.0% | |
| ! | TCAATTTGCAATTCTGGGAA+AGG | - | tig0019439:4239-4258 | None:intergenic | 35.0% |
| AGTCAACATGAATTACCAAG+GGG | - | tig0019439:4420-4439 | None:intergenic | 35.0% | |
| CAGTCAACATGAATTACCAA+GGG | - | tig0019439:4421-4440 | None:intergenic | 35.0% | |
| ACAGTCAACATGAATTACCA+AGG | - | tig0019439:4422-4441 | None:intergenic | 35.0% | |
| ATTAAGGACCACATGTAATG+AGG | + | tig0019439:4444-4463 | Msa1373470:intron | 35.0% | |
| AATATTAGTGTAGTCATCCC+AGG | + | tig0019439:4516-4535 | Msa1373470:intron | 35.0% | |
| AAATTTACGCACTCTTTCCT+TGG | + | tig0019439:4821-4840 | Msa1373470:CDS | 35.0% | |
| GGTCGAAAGCTTATCAAATT+TGG | - | tig0019439:4900-4919 | None:intergenic | 35.0% | |
| AGAAAATTCTGCTCTTTGCA+CGG | + | tig0019439:4939-4958 | Msa1373470:three_prime_UTR | 35.0% | |
| ! | TCTGTACATACCTACTGTTT+TGG | + | tig0019439:4976-4995 | Msa1373470:three_prime_UTR | 35.0% |
| TGATAAAGACATTGTTGCTC+TGG | - | tig0019439:5164-5183 | None:intergenic | 35.0% | |
| AATCTGGATTCTTGCCAGAT+CGG | + | tig0019439:261-280 | Msa1373470:CDS | 40.0% | |
| GAAGGACTTGTGAATTTGAC+AGG | + | tig0019439:288-307 | Msa1373470:CDS | 40.0% | |
| AGCGGGATTCGATATATATC+AGG | + | tig0019439:462-481 | Msa1373470:CDS | 40.0% | |
| CACAGACTGCTGTATATATG+TGG | + | tig0019439:745-764 | Msa1373470:intron | 40.0% | |
| TATGCTAACAAGTGCCCTTA+GGG | - | tig0019439:1115-1134 | None:intergenic | 40.0% | |
| TTATGCTAACAAGTGCCCTT+AGG | - | tig0019439:1116-1135 | None:intergenic | 40.0% | |
| TCTAACAAGACATGATCAGG+TGG | - | tig0019439:1196-1215 | None:intergenic | 40.0% | |
| !!! | ATTGGTTCTTGGTTTTGTCC+AGG | + | tig0019439:1250-1269 | Msa1373470:intron | 40.0% |
| TTGTCCAGGTTTAAACAAGC+TGG | + | tig0019439:1264-1283 | Msa1373470:intron | 40.0% | |
| ! | TCTTCCAGCTTGTTTAAACC+TGG | - | tig0019439:1271-1290 | None:intergenic | 40.0% |
| TAGGCCATTATCAGTTACTG+AGG | - | tig0019439:1311-1330 | None:intergenic | 40.0% | |
| AATGGCCTAAAAAGGCTATC+GGG | + | tig0019439:1322-1341 | Msa1373470:CDS | 40.0% | |
| ! | TCAATCCCGATAGCCTTTTT+AGG | - | tig0019439:1330-1349 | None:intergenic | 40.0% |
| ACAGATAACTGATGCTGGAT+TGG | + | tig0019439:1381-1400 | Msa1373470:CDS | 40.0% | |
| !!! | TATGCTCCATTTTTTCTGGG+TGG | + | tig0019439:1798-1817 | Msa1373470:intron | 40.0% |
| GATGATCCACCCAGAAAAAA+TGG | - | tig0019439:1807-1826 | None:intergenic | 40.0% | |
| TAGCATGTGACAAATAGGCA+TGG | - | tig0019439:1885-1904 | None:intergenic | 40.0% | |
| ! | CAACTCAAGTGCTTTATTGG+GGG | + | tig0019439:1940-1959 | Msa1373470:intron | 40.0% |
| GGGTAAAAACTACATCTGTC+AGG | + | tig0019439:1960-1979 | Msa1373470:intron | 40.0% | |
| ACGATGTTTGAATCCAACTC+TGG | + | tig0019439:2017-2036 | Msa1373470:intron | 40.0% | |
| CATGTGTGAAGGCTTAGATA+GGG | - | tig0019439:2043-2062 | None:intergenic | 40.0% | |
| TCATGTGTGAAGGCTTAGAT+AGG | - | tig0019439:2044-2063 | None:intergenic | 40.0% | |
| CGCAGCTAAGTGCTAAAAAA+GGG | - | tig0019439:2098-2117 | None:intergenic | 40.0% | |
| TCGCAGCTAAGTGCTAAAAA+AGG | - | tig0019439:2099-2118 | None:intergenic | 40.0% | |
| CTGCGAGATTTCTACCTTTA+TGG | + | tig0019439:2113-2132 | Msa1373470:intron | 40.0% | |
| TGAGGTTTCAATCAAGGAAG+CGG | + | tig0019439:2236-2255 | Msa1373470:intron | 40.0% | |
| GGAAGCGGAACAAATAACAA+TGG | + | tig0019439:2251-2270 | Msa1373470:intron | 40.0% | |
| CAGAACTGTGCAAACAATCT+TGG | - | tig0019439:2406-2425 | None:intergenic | 40.0% | |
| AGGGTTAAGAGAAAGGGAAA+TGG | - | tig0019439:2545-2564 | None:intergenic | 40.0% | |
| ACTGCAATTTCATTGGAGGA+AGG | - | tig0019439:2609-2628 | None:intergenic | 40.0% | |
| !! | TGCTTTTGGGTGAGATTCTA+GGG | - | tig0019439:2661-2680 | None:intergenic | 40.0% |
| ! | ACTAAGGGTTGAGTGCTTTT+GGG | - | tig0019439:2674-2693 | None:intergenic | 40.0% |
| TAGGGAAACCTAAGGACTAA+GGG | - | tig0019439:2689-2708 | None:intergenic | 40.0% | |
| TTAGGGAAACCTAAGGACTA+AGG | - | tig0019439:2690-2709 | None:intergenic | 40.0% | |
| ! | ACCAAAAGAGGGGACTTTTA+GGG | - | tig0019439:2707-2726 | None:intergenic | 40.0% |
| TTCATCAGATTGTGAGAGCT+AGG | - | tig0019439:2735-2754 | None:intergenic | 40.0% | |
| TAAACCGTTCACTTTCTTCC+AGG | + | tig0019439:2883-2902 | Msa1373470:intron | 40.0% | |
| TGCATTCTGTTCAAATCGTG+AGG | - | tig0019439:2935-2954 | None:intergenic | 40.0% | |
| TATCTGCATTGAGTGCTTAC+CGG | + | tig0019439:2988-3007 | Msa1373470:intron | 40.0% | |
| AAATCTATCAGCAAGCTCTG+CGG | + | tig0019439:3060-3079 | Msa1373470:intron | 40.0% | |
| ATCCGAAACTAGCCAAACTA+AGG | + | tig0019439:3217-3236 | Msa1373470:intron | 40.0% | |
| AGTTCCAGAGTCAGTAATAC+GGG | - | tig0019439:3476-3495 | None:intergenic | 40.0% | |
| GATGCCTATCATATGGGTAT+TGG | + | tig0019439:3724-3743 | Msa1373470:intron | 40.0% | |
| AAGTAAGCTGGACTAAAACG+AGG | - | tig0019439:3939-3958 | None:intergenic | 40.0% | |
| !! | GGTGGATTATTAACTGATGC+AGG | + | tig0019439:4171-4190 | Msa1373470:CDS | 40.0% |
| GTCAACAATCTATTACCCCT+TGG | + | tig0019439:4402-4421 | Msa1373470:intron | 40.0% | |
| ATAACTAGGTCTTGCAGAAC+AGG | + | tig0019439:4569-4588 | Msa1373470:intron | 40.0% | |
| ! | CAAAGAGGTTTGTTCTGCTT+TGG | + | tig0019439:4683-4702 | Msa1373470:intron | 40.0% |
| GTGTAACAAATGAAGGACTG+CGG | + | tig0019439:4781-4800 | Msa1373470:CDS | 40.0% | |
| ATCTGGATTCTTGCCAGATC+GGG | + | tig0019439:262-281 | Msa1373470:CDS | 45.0% | |
| !! | CTAGGCTTTTCAAGAGAGTG+AGG | - | tig0019439:416-435 | None:intergenic | 45.0% |
| CTTCAGTGTCAGACAACACT+AGG | - | tig0019439:434-453 | None:intergenic | 45.0% | |
| GTGTTGTCTGACACTGAAGT+CGG | + | tig0019439:435-454 | Msa1373470:CDS | 45.0% | |
| TGTTGTCTGACACTGAAGTC+GGG | + | tig0019439:436-455 | Msa1373470:CDS | 45.0% | |
| TGTGCGTTATGGCTCAATCT+TGG | + | tig0019439:714-733 | Msa1373470:intron | 45.0% | |
| ACAAGACATGATCAGGTGGA+TGG | - | tig0019439:1192-1211 | None:intergenic | 45.0% | |
| CAGATTCTGGGCCATATCAA+TGG | - | tig0019439:1562-1581 | None:intergenic | 45.0% | |
| TGTGACAAATAGGCATGGCA+GGG | - | tig0019439:1880-1899 | None:intergenic | 45.0% | |
| ATGTGACAAATAGGCATGGC+AGG | - | tig0019439:1881-1900 | None:intergenic | 45.0% | |
| AGCCTTCACACATGACATGA+TGG | + | tig0019439:2049-2068 | Msa1373470:intron | 45.0% | |
| TTGTGGGGTTGTGTCCATAA+AGG | - | tig0019439:2130-2149 | None:intergenic | 45.0% | |
| AGACCATATCACCTCCAATG+TGG | + | tig0019439:2197-2216 | Msa1373470:intron | 45.0% | |
| GACCATATCACCTCCAATGT+GGG | + | tig0019439:2198-2217 | Msa1373470:intron | 45.0% | |
| AACTGGTATCAGTCCCACAT+TGG | - | tig0019439:2214-2233 | None:intergenic | 45.0% | |
| TGTCCAAATTGACCTACGTC+TGG | + | tig0019439:2424-2443 | Msa1373470:intron | 45.0% | |
| !! | TTGGGTGAGATTCTAGGGTT+GGG | - | tig0019439:2656-2675 | None:intergenic | 45.0% |
| !! | TTTGGGTGAGATTCTAGGGT+TGG | - | tig0019439:2657-2676 | None:intergenic | 45.0% |
| !! | GTGCTTTTGGGTGAGATTCT+AGG | - | tig0019439:2662-2681 | None:intergenic | 45.0% |
| ! | GACTAAGGGTTGAGTGCTTT+TGG | - | tig0019439:2675-2694 | None:intergenic | 45.0% |
| !! | GGGACTTTTAGGGAAACCTA+AGG | - | tig0019439:2697-2716 | None:intergenic | 45.0% |
| ! | TCCCTAAAAGTCCCCTCTTT+TGG | + | tig0019439:2703-2722 | Msa1373470:intron | 45.0% |
| ! | CACCAAAAGAGGGGACTTTT+AGG | - | tig0019439:2708-2727 | None:intergenic | 45.0% |
| CTAGGTCATCACCAAAAGAG+GGG | - | tig0019439:2717-2736 | None:intergenic | 45.0% | |
| GCTAGGTCATCACCAAAAGA+GGG | - | tig0019439:2718-2737 | None:intergenic | 45.0% | |
| AGCTAGGTCATCACCAAAAG+AGG | - | tig0019439:2719-2738 | None:intergenic | 45.0% | |
| !! | CAAGGTGTTTTGCTCGGATA+TGG | - | tig0019439:2776-2795 | None:intergenic | 45.0% |
| CGTTCCTGGAAGAAAGTGAA+CGG | - | tig0019439:2890-2909 | None:intergenic | 45.0% | |
| ! | TGCAATAGCTTTTGGCCTAC+CGG | - | tig0019439:3010-3029 | None:intergenic | 45.0% |
| CAGCAATCTTTCTTGGCAAC+AGG | - | tig0019439:3103-3122 | None:intergenic | 45.0% | |
| TGTGGGTCAGCAATCTTTCT+TGG | - | tig0019439:3110-3129 | None:intergenic | 45.0% | |
| TGCAACCTGCAGTATGTTGT+GGG | - | tig0019439:3127-3146 | None:intergenic | 45.0% | |
| ATGCAACCTGCAGTATGTTG+TGG | - | tig0019439:3128-3147 | None:intergenic | 45.0% | |
| CATACTGCAGGTTGCATCTT+CGG | + | tig0019439:3131-3150 | Msa1373470:intron | 45.0% | |
| !! | GATTGGCTCGTGTTCTGTAT+AGG | + | tig0019439:3415-3434 | Msa1373470:intron | 45.0% |
| GTGTTCTGTATAGGTCTGAG+TGG | + | tig0019439:3424-3443 | Msa1373470:intron | 45.0% | |
| AGAATACTCGGCATTTCCCA+TGG | + | tig0019439:3679-3698 | Msa1373470:intron | 45.0% | |
| CAGCCCAATACCCATATGAT+AGG | - | tig0019439:3731-3750 | None:intergenic | 45.0% | |
| CACATATCTCAAGGGATTGC+AGG | - | tig0019439:4152-4171 | None:intergenic | 45.0% | |
| CTGCAATCCCTTGAGATATG+TGG | + | tig0019439:4150-4169 | Msa1373470:CDS | 45.0% | |
| CAATCCCTTGAGATATGTGG+TGG | + | tig0019439:4153-4172 | Msa1373470:CDS | 45.0% | |
| GGAAAGGTTTAGCTGTGTCA+AGG | - | tig0019439:4223-4242 | None:intergenic | 45.0% | |
| AGCTGCATCCTCATTACATG+TGG | - | tig0019439:4455-4474 | None:intergenic | 45.0% | |
| ACATGTAATGAGGATGCAGC+TGG | + | tig0019439:4454-4473 | Msa1373470:intron | 45.0% | |
| ATGGGTTTACACGTGTTCCT+GGG | - | tig0019439:4536-4555 | None:intergenic | 45.0% | |
| ! | AATGGGTTTACACGTGTTCC+TGG | - | tig0019439:4537-4556 | None:intergenic | 45.0% |
| TTGATACCAACTATGGGGCA+AGG | - | tig0019439:4662-4681 | None:intergenic | 45.0% | |
| TCTTTCCTTGGAGTCTTGCA+AGG | + | tig0019439:4833-4852 | Msa1373470:CDS | 45.0% | |
| ATTGACCTTGCAAGACTCCA+AGG | - | tig0019439:4841-4860 | None:intergenic | 45.0% | |
| ! | GCAGAATTTTCTCGATCACC+TGG | - | tig0019439:4931-4950 | None:intergenic | 45.0% |
| !! | GAAAAATAATAAAAAATAAT+CGG | - | tig0019439:1586-1605 | None:intergenic | 5.0% |
| !! | CAAAAAATATATAAATAATT+TGG | + | tig0019439:4339-4358 | Msa1373470:intron | 5.0% |
| TCTGGATTCTTGCCAGATCG+GGG | + | tig0019439:263-282 | Msa1373470:CDS | 50.0% | |
| GCTCGACAGATAACTGATGC+TGG | + | tig0019439:1376-1395 | Msa1373470:CDS | 50.0% | |
| TGACAAATAGGCATGGCAGG+GGG | - | tig0019439:1878-1897 | None:intergenic | 50.0% | |
| GTGACAAATAGGCATGGCAG+GGG | - | tig0019439:1879-1898 | None:intergenic | 50.0% | |
| TCGTGTTTGTACAAGGGCTC+AGG | - | tig0019439:2001-2020 | None:intergenic | 50.0% | |
| GGCCATCATGTCATGTGTGA+AGG | - | tig0019439:2054-2073 | None:intergenic | 50.0% | |
| TGGACACAACCCCACAAAAC+CGG | + | tig0019439:2133-2152 | Msa1373470:intron | 50.0% | |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | - | tig0019439:2146-2165 | None:intergenic | 50.0% |
| GTCCCACATTGGAGGTGATA+TGG | - | tig0019439:2203-2222 | None:intergenic | 50.0% | |
| TGGTATCAGTCCCACATTGG+AGG | - | tig0019439:2211-2230 | None:intergenic | 50.0% | |
| GGGACTGATACCAGTTGTTG+AGG | + | tig0019439:2218-2237 | Msa1373470:intron | 50.0% | |
| CCTCCAGACGTAGGTCAATT+TGG | - | tig0019439:2430-2449 | None:intergenic | 50.0% | |
| CCAAATTGACCTACGTCTGG+AGG | + | tig0019439:2427-2446 | Msa1373470:intron | 50.0% | |
| GCACTCAACCCTTAGTCCTT+AGG | + | tig0019439:2678-2697 | Msa1373470:intron | 50.0% | |
| !! | TGGGTGCAAGGTGTTTTGCT+CGG | - | tig0019439:2782-2801 | None:intergenic | 50.0% |
| AGCAAAACACCTTGCACCCA+GGG | + | tig0019439:2782-2801 | Msa1373470:intron | 50.0% | |
| !! | GTGTTTTCAGGCAGCTAGGA+AGG | - | tig0019439:2823-2842 | None:intergenic | 50.0% |
| !! | CAAGGTGTTTTCAGGCAGCT+AGG | - | tig0019439:2827-2846 | None:intergenic | 50.0% |
| GGTGCTTGGGATAAGTCTCA+AGG | - | tig0019439:2845-2864 | None:intergenic | 50.0% | |
| !! | TTATTTCTGCCTCAGTCGCG+AGG | - | tig0019439:2866-2885 | None:intergenic | 50.0% |
| ATCGTGAGGCAAGTACAGTG+TGG | - | tig0019439:2921-2940 | None:intergenic | 50.0% | |
| TGCATTGAGTGCTTACCGGT+AGG | + | tig0019439:2992-3011 | Msa1373470:intron | 50.0% | |
| TTCCTTCCTTGCCCCATAGT+TGG | + | tig0019439:4653-4672 | Msa1373470:intron | 50.0% | |
| TACCAACTATGGGGCAAGGA+AGG | - | tig0019439:4658-4677 | None:intergenic | 50.0% | |
| GGAGTCTTGCAAGGTCAATG+CGG | + | tig0019439:4842-4861 | Msa1373470:CDS | 50.0% | |
| GCTTTCGACCAGAATAGACC+AGG | + | tig0019439:4910-4929 | Msa1373470:exon | 50.0% | |
| CTCGATCACCTGGTCTATTC+TGG | - | tig0019439:4921-4940 | None:intergenic | 50.0% | |
| TCTTGCCAGATCGGGGATGA+AGG | + | tig0019439:270-289 | Msa1373470:CDS | 55.0% | |
| CAAGTCCTTCATCCCCGATC+TGG | - | tig0019439:278-297 | None:intergenic | 55.0% | |
| GACACTGAAGTCGGGAACAG+CGG | + | tig0019439:444-463 | Msa1373470:CDS | 55.0% | |
| ACACTGAAGTCGGGAACAGC+GGG | + | tig0019439:445-464 | Msa1373470:CDS | 55.0% | |
| ! | GAGTGTGAGTGCTGTCTACG+AGG | + | tig0019439:603-622 | Msa1373470:intron | 55.0% |
| GCTCACAGCAATCACGTCCT+AGG | - | tig0019439:862-881 | None:intergenic | 55.0% | |
| TAGGCATGGCAGGGGGAAAA+TGG | - | tig0019439:1871-1890 | None:intergenic | 55.0% | |
| GGCTTAGATAGGGCCAGAGT+TGG | - | tig0019439:2033-2052 | None:intergenic | 55.0% | |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | - | tig0019439:2145-2164 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | - | tig0019439:2147-2166 | None:intergenic | 55.0% |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | tig0019439:2147-2166 | Msa1373470:intron | 55.0% |
| CTGCTTTCTCCTCCAGACGT+AGG | - | tig0019439:2439-2458 | None:intergenic | 55.0% | |
| GAGCAAAACACCTTGCACCC+AGG | + | tig0019439:2781-2800 | Msa1373470:intron | 55.0% | |
| AGGCAAGTACAGTGTGGCTG+CGG | - | tig0019439:2915-2934 | None:intergenic | 55.0% | |
| GCTGACCCACAACATACTGC+AGG | + | tig0019439:3119-3138 | Msa1373470:intron | 55.0% | |
| !! | GGAGCCCGTATTACTGACTC+TGG | + | tig0019439:3469-3488 | Msa1373470:CDS | 55.0% |
| !! | CCCCACAAAACCGGCTTGTG+AGG | + | tig0019439:2142-2161 | Msa1373470:intron | 60.0% |
| GCAGTCCTCACCTCACAAGC+CGG | - | tig0019439:2155-2174 | None:intergenic | 60.0% | |
| TTCGTACTGCCCTGGGTGCA+AGG | - | tig0019439:2794-2813 | None:intergenic | 60.0% | |
| GCAGCGTTTCGTACTGCCCT+GGG | - | tig0019439:2801-2820 | None:intergenic | 60.0% | |
| GGCAAGTACAGTGTGGCTGC+GGG | - | tig0019439:2914-2933 | None:intergenic | 60.0% | |
| GGCAGCGTTTCGTACTGCCC+TGG | - | tig0019439:2802-2821 | None:intergenic | 65.0% | |
| TCCCAAGCACCTCGCGACTG+AGG | + | tig0019439:2854-2873 | Msa1373470:intron | 65.0% | |
| ! | GCCTCAGTCGCGAGGTGCTT+GGG | - | tig0019439:2858-2877 | None:intergenic | 65.0% |
| ! | TGCCTCAGTCGCGAGGTGCT+TGG | - | tig0019439:2859-2878 | None:intergenic | 65.0% |
| GTGTGGCTGCGGGACGTTCC+TGG | - | tig0019439:2904-2923 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019439 | gene | 240 | 5245 | 240 | ID=Msa1373470;Name=Msa1373470 |
| tig0019439 | mRNA | 240 | 5245 | 240 | ID=Msa1373470-mRNA-1;Parent=Msa1373470;Name=Msa1373470-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.6|0.5|1|1|1|6|319|229 |
| tig0019439 | exon | 240 | 309 | 240 | ID=Msa1373470-mRNA-1:exon:3363;Parent=Msa1373470-mRNA-1 |
| tig0019439 | exon | 412 | 483 | 412 | ID=Msa1373470-mRNA-1:exon:3364;Parent=Msa1373470-mRNA-1 |
| tig0019439 | exon | 1272 | 1415 | 1272 | ID=Msa1373470-mRNA-1:exon:3365;Parent=Msa1373470-mRNA-1 |
| tig0019439 | exon | 3437 | 3508 | 3437 | ID=Msa1373470-mRNA-1:exon:3366;Parent=Msa1373470-mRNA-1 |
| tig0019439 | exon | 4139 | 4285 | 4139 | ID=Msa1373470-mRNA-1:exon:3367;Parent=Msa1373470-mRNA-1 |
| tig0019439 | exon | 4742 | 5245 | 4742 | ID=Msa1373470-mRNA-1:exon:3368;Parent=Msa1373470-mRNA-1 |
| tig0019439 | CDS | 240 | 309 | 240 | ID=Msa1373470-mRNA-1:cds;Parent=Msa1373470-mRNA-1 |
| tig0019439 | CDS | 412 | 483 | 412 | ID=Msa1373470-mRNA-1:cds;Parent=Msa1373470-mRNA-1 |
| tig0019439 | CDS | 1272 | 1415 | 1272 | ID=Msa1373470-mRNA-1:cds;Parent=Msa1373470-mRNA-1 |
| tig0019439 | CDS | 3437 | 3508 | 3437 | ID=Msa1373470-mRNA-1:cds;Parent=Msa1373470-mRNA-1 |
| tig0019439 | CDS | 4139 | 4285 | 4139 | ID=Msa1373470-mRNA-1:cds;Parent=Msa1373470-mRNA-1 |
| tig0019439 | CDS | 4742 | 4926 | 4742 | ID=Msa1373470-mRNA-1:cds;Parent=Msa1373470-mRNA-1 |
| tig0019439 | three_prime_UTR | 4927 | 5245 | 4927 | ID=Msa1373470-mRNA-1:three_prime_utr;Parent=Msa1373470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
