AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0234050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0234050 MtrunA17_Chr2g0281861 78.088 251 16 3 1 212 1 251 1.69e-135 380
Msa0234050 MtrunA17_Chr4g0047521 64.940 251 46 5 1 212 1 248 3.12e-104 300
Msa0234050 MtrunA17_Chr3g0104651 47.325 243 88 4 10 212 13 255 1.76e-71 218
Msa0234050 MtrunA17_Chr4g0006201 50.431 232 76 3 10 202 6 237 7.91e-71 216
Msa0234050 MtrunA17_Chr7g0242261 48.718 234 80 4 5 198 16 249 2.88e-65 202
Msa0234050 MtrunA17_Chr8g0376861 36.400 250 101 6 14 211 10 253 7.23e-42 142
Msa0234050 MtrunA17_Chr3g0123161 35.827 254 99 7 14 211 13 258 9.66e-38 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0234050 AT3G47160.1 51.037 241 77 4 13 212 5 245 1.66e-79 238
Msa0234050 AT3G47160.2 48.617 253 77 5 13 212 5 257 7.09e-76 229
Msa0234050 AT5G01520.1 48.523 237 83 4 10 207 1 237 1.28e-73 223
Msa0234050 AT5G58787.1 51.452 241 73 5 13 212 5 242 1.04e-70 216
Msa0234050 AT5G58787.2 50.885 226 82 7 13 212 5 227 3.01e-63 196
Msa0234050 AT3G47160.3 47.596 208 68 4 46 212 1 208 6.10e-61 189
Msa0234050 AT5G58787.3 47.619 210 81 7 29 212 2 208 1.81e-51 165
Msa0234050 AT5G01520.2 44.848 165 60 3 10 143 1 165 1.60e-43 144
Msa0234050 AT1G24440.1 38.367 245 102 7 13 211 9 250 1.21e-40 139
Msa0234050 AT1G13195.1 37.238 239 104 5 14 207 16 253 2.72e-40 138
Msa0234050 AT1G13195.2 43.624 149 73 3 69 207 68 215 1.05e-32 118
Msa0234050 AT1G24440.2 42.208 154 73 3 71 211 68 218 1.13e-32 117

Find 67 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGCCTCTTATGATATTA+AGG 0.242881 2_2:-6512167 Msa0234050:three_prime_UTR
CATATAATCTACCTTTATAT+TGG 0.260470 2_2:+6512040 None:intergenic
AAAGTCTGCATTCAACTATT+TGG 0.271531 2_2:+6512010 None:intergenic
GAGAGTCATAAGGATCAAAA+AGG 0.298294 2_2:+6512448 None:intergenic
AACTCAAGGCTGGAATCTTC+TGG 0.300509 2_2:+6512292 None:intergenic
TATAAACTTTGAATGTAATC+TGG 0.341065 2_2:-6512358 Msa0234050:three_prime_UTR
TGCAATCTTGCTGGAGCCCT+TGG 0.344245 2_2:-6516008 Msa0234050:CDS
TTGTTGTGGTTACTATTTCA+AGG 0.358630 2_2:-6511989 Msa0234050:three_prime_UTR
AAAAGAAATTTACAAGGTAT+TGG 0.363016 2_2:+6517138 None:intergenic
TTTAAGACTGTCACGACAAA+AGG 0.370109 2_2:+6512602 None:intergenic
TGTACATGAAAAGCCTTCTA+AGG 0.378666 2_2:+6512502 None:intergenic
AGAAGAGTGTGGAATATGTA+TGG 0.390272 2_2:-6515378 Msa0234050:CDS
GAGTAAACTCGGGCGATCTC+TGG 0.395134 2_2:-6512578 Msa0234050:CDS
AAAAGAAACAAGTGCGCTGC+TGG 0.395977 2_2:+6516050 None:intergenic
TGGACAGATTGCAATCTTGC+TGG 0.408751 2_2:-6516017 Msa0234050:intron
ACTATGAAACTTGTTGTTGT+TGG 0.410368 2_2:-6517285 Msa0234050:five_prime_UTR
TAGACTATGAACCAATATAA+AGG 0.423597 2_2:-6512051 Msa0234050:three_prime_UTR
TCTGGATATTCACCGATAGT+AGG 0.429327 2_2:-6512560 Msa0234050:CDS
TAACAAGAGAGAACCTTAGA+AGG 0.432085 2_2:-6512515 Msa0234050:CDS
AAGTGGTGGTTCTTCTTCCA+TGG 0.437052 2_2:-6517212 Msa0234050:CDS
CACAGAAATGTGTTCTTTGA+TGG 0.446529 2_2:-6512402 Msa0234050:three_prime_UTR
ATTCACCTTAATATCATAAG+AGG 0.459611 2_2:+6512162 None:intergenic
TTGTTGTAGTTATTGTTCCA+AGG 0.471942 2_2:-6511953 None:intergenic
GTGTTCTTTGATGGGTGGTT+CGG 0.474646 2_2:-6512393 Msa0234050:three_prime_UTR
ATCTTTGATCATGAATGCAT+TGG 0.478399 2_2:-6512107 Msa0234050:three_prime_UTR
AGTTGGTCATGAAGTTGAAA+TGG 0.483667 2_2:-6512262 Msa0234050:three_prime_UTR
TGGTTCATAGTCTAAGTTGT+TGG 0.484833 2_2:+6512060 None:intergenic
TTAGAATTCTTAATAATCCA+AGG 0.493296 2_2:+6515991 None:intergenic
CAGTCTTAAAAGAGTAAACT+CGG 0.499948 2_2:-6512589 Msa0234050:CDS
TTAAGACTGTCACGACAAAA+GGG 0.503150 2_2:+6512603 None:intergenic
TGTTGTGGTTACTATTTCAA+GGG 0.504413 2_2:-6511988 Msa0234050:three_prime_UTR
TGTTGTAGTTATTGTTCCAA+GGG 0.504529 2_2:-6511952 None:intergenic
GTGGTTCTTCTTCCATGGGA+AGG 0.507770 2_2:-6517207 Msa0234050:CDS
ATTAAGAATTCTAATTTACA+AGG 0.511384 2_2:-6515982 Msa0234050:intron
TATCTTAAGTGAGAGTCATA+AGG 0.513554 2_2:+6512438 None:intergenic
GCCTTGAGTTTGCGATGAGT+TGG 0.514298 2_2:-6512279 Msa0234050:three_prime_UTR
ACTCATCGCAAACTCAAGGC+TGG 0.525194 2_2:+6512282 None:intergenic
TGAGGAAACATGTACATAAG+TGG 0.527124 2_2:-6517229 Msa0234050:exon
CTGGATATTCACCGATAGTA+GGG 0.527934 2_2:-6512559 Msa0234050:CDS
TCTTTGTTACAACTTGAAAG+AGG 0.536875 2_2:-6515509 Msa0234050:CDS
AAAACAGAAGGTTGTATGCA+TGG 0.538430 2_2:-6515465 Msa0234050:CDS
TTTGAAAGAGAAGAAGAGTG+TGG 0.544267 2_2:-6515389 Msa0234050:CDS
TTGATCATGAATGCATTGGA+TGG 0.551447 2_2:-6512103 Msa0234050:three_prime_UTR
GTCTACTATGTCCCTACTAT+CGG 0.552253 2_2:+6512548 None:intergenic
CACATGACATGGTTGCAGTT+AGG 0.552857 2_2:+6515332 None:intergenic
AGTGGTGGTTCTTCTTCCAT+GGG 0.553651 2_2:-6517211 Msa0234050:CDS
TCTTTGATGGGTGGTTCGGA+TGG 0.557204 2_2:-6512389 Msa0234050:three_prime_UTR
AGGGATTCTGGTATGATCAA+AGG 0.560502 2_2:+6512468 None:intergenic
AGCATTTCAGGCACATGACA+TGG 0.568729 2_2:+6515321 None:intergenic
TTCCTTAAAAGACCTTCCCA+TGG 0.575494 2_2:+6517195 None:intergenic
ACCAACTCATCGCAAACTCA+AGG 0.575881 2_2:+6512278 None:intergenic
CTGGAATCTTCTGGAAGACG+TGG 0.580626 2_2:+6512301 None:intergenic
AGATTGAATTACTTATCAAG+AGG 0.589731 2_2:-6512200 Msa0234050:three_prime_UTR
TAGAATTCTTAATAATCCAA+GGG 0.590750 2_2:+6515992 None:intergenic
CTTTCAAGTTGTAACAAAGA+CGG 0.593343 2_2:+6515512 None:intergenic
CACGCACCATCGTATTCCCT+CGG 0.609698 2_2:+6516098 None:intergenic
ACAGAAATGTGTTCTTTGAT+GGG 0.615943 2_2:-6512401 Msa0234050:three_prime_UTR
TAGTAGGGACATAGTAGACA+TGG 0.618868 2_2:-6512544 Msa0234050:CDS
TAAGTAATTCAATCTGTACA+AGG 0.625817 2_2:+6512208 None:intergenic
GAAATGTGTTCTTTGATGGG+TGG 0.628752 2_2:-6512398 Msa0234050:three_prime_UTR
TAAGACTGTCACGACAAAAG+GGG 0.632510 2_2:+6512604 None:intergenic
GTTGAATGCAGACTTTGTTG+TGG 0.647394 2_2:-6512003 Msa0234050:three_prime_UTR
GTATCGTAGAAGAGAAGACG+AGG 0.670479 2_2:-6515438 Msa0234050:CDS
AGAAGGTTGTATGCATGGAG+CGG 0.676580 2_2:-6515460 Msa0234050:CDS
GGAAACATGTACATAAGTGG+TGG 0.683193 2_2:-6517226 Msa0234050:exon
AGTCTTAAAAGAGTAAACTC+GGG 0.691812 2_2:-6512588 Msa0234050:CDS
AAGAGGTGTCACTGATGCTG+AGG 0.697146 2_2:-6515492 Msa0234050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAATTTTTATTATTTT+TGG - chr2_2:6512229-6512248 Msa0234050:three_prime_UTR 0.0%
!! GTTAAAAAAAATTAAGATAA+AGG + chr2_2:6513650-6513669 None:intergenic 10.0%
!! TCAATATTATTTATTACATA+TGG - chr2_2:6514518-6514537 Msa0234050:intron 10.0%
!!! AACTTAAAATATTCTTTTTA+AGG - chr2_2:6516277-6516296 Msa0234050:intron 10.0%
!!! ATCATGAGTTATTTTTATTT+TGG - chr2_2:6512258-6512277 Msa0234050:three_prime_UTR 15.0%
!!! TTTATTTTGGAATTATTTTC+TGG - chr2_2:6512271-6512290 Msa0234050:three_prime_UTR 15.0%
!!! TTATTTTGGAATTATTTTCT+GGG - chr2_2:6512272-6512291 Msa0234050:three_prime_UTR 15.0%
!! AACCAAAAAAAAAAAAATCA+GGG + chr2_2:6512311-6512330 None:intergenic 15.0%
!!! ATTTTTCTTTTCCATAAATA+TGG - chr2_2:6512340-6512359 Msa0234050:three_prime_UTR 15.0%
!! TTATAACTTGATCATATAAT+TGG - chr2_2:6513112-6513131 Msa0234050:intron 15.0%
!! TATAACTTGATCATATAATT+GGG - chr2_2:6513113-6513132 Msa0234050:intron 15.0%
!! ATTAAGAATTCTAATTTACA+AGG - chr2_2:6513272-6513291 Msa0234050:intron 15.0%
!! TTATAAAAATAACTTAGACA+TGG - chr2_2:6513517-6513536 Msa0234050:intron 15.0%
!! TTCAGAACTAAATTAATTTA+AGG + chr2_2:6514141-6514160 None:intergenic 15.0%
!! GTAATAAATAATATTGAGAT+TGG + chr2_2:6514515-6514534 None:intergenic 15.0%
!!! AAAATACGAATCTTTAAAAT+TGG + chr2_2:6514595-6514614 None:intergenic 15.0%
!! GAAATCTAATAAACTTAATT+AGG + chr2_2:6515553-6515572 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTGATGCA+TGG + chr2_2:6515720-6515739 None:intergenic 15.0%
!! AAAAAAATACATATTATCTG+TGG - chr2_2:6515733-6515752 Msa0234050:intron 15.0%
!! AAAAAATACATATTATCTGT+GGG - chr2_2:6515734-6515753 Msa0234050:intron 15.0%
!!! CATTTTTTTTTTTTTTTTGC+AGG - chr2_2:6516607-6516626 Msa0234050:intron 15.0%
!!! AAAAGAAAAACAGTATTTTG+AGG - chr2_2:6512007-6512026 Msa0234050:three_prime_UTR 20.0%
!! AAAAGAAATTTACAAGGTAT+TGG + chr2_2:6512119-6512138 None:intergenic 20.0%
!!! TTTTTTAGTTGTTTTCTTGA+AGG - chr2_2:6512186-6512205 Msa0234050:three_prime_UTR 20.0%
!!! TTTTTAGTTGTTTTCTTGAA+GGG - chr2_2:6512187-6512206 Msa0234050:three_prime_UTR 20.0%
!!! TATTTTGGAATTATTTTCTG+GGG - chr2_2:6512273-6512292 Msa0234050:three_prime_UTR 20.0%
!! GAACCAAAAAAAAAAAAATC+AGG + chr2_2:6512312-6512331 None:intergenic 20.0%
!! TAGAATTCTTAATAATCCAA+GGG + chr2_2:6513265-6513284 None:intergenic 20.0%
!! TTAGAATTCTTAATAATCCA+AGG + chr2_2:6513266-6513285 None:intergenic 20.0%
!! TAGCTTATATGAAAAAAGTT+TGG - chr2_2:6513477-6513496 Msa0234050:intron 20.0%
!! CCATATAAAAAGAAATCATA+CGG + chr2_2:6514102-6514121 None:intergenic 20.0%
!! AGATAAAGAAGAATTTAACA+TGG + chr2_2:6514643-6514662 None:intergenic 20.0%
!! ACAATTCAAAACTAATGATT+TGG + chr2_2:6514695-6514714 None:intergenic 20.0%
!! TATAATACCATTATGAAAGA+AGG - chr2_2:6514898-6514917 Msa0234050:intron 20.0%
!!! GATATGAAATAGCTTTATAA+AGG - chr2_2:6515448-6515467 Msa0234050:CDS 20.0%
!! ATTAATTACTAATGAGAATC+AGG - chr2_2:6515599-6515618 Msa0234050:intron 20.0%
!! AAAAATACATATTATCTGTG+GGG - chr2_2:6515735-6515754 Msa0234050:intron 20.0%
!!! TTGGTATTTGTTTTATTGAT+CGG - chr2_2:6516244-6516263 Msa0234050:intron 20.0%
!! TATAAACTTTGAATGTAATC+TGG - chr2_2:6516896-6516915 Msa0234050:intron 20.0%
!! CATATAATCTACCTTTATAT+TGG + chr2_2:6517217-6517236 None:intergenic 20.0%
! GAAGGAAAAAGAAATTTACA+AGG + chr2_2:6512125-6512144 None:intergenic 25.0%
! GAGAATTGAAAGAAAAAAGA+AGG + chr2_2:6512143-6512162 None:intergenic 25.0%
!!! AGCCCTGATTTTTTTTTTTT+TGG - chr2_2:6512306-6512325 Msa0234050:three_prime_UTR 25.0%
!! TTTCTTTTCCATAAATATGG+TGG - chr2_2:6512343-6512362 Msa0234050:three_prime_UTR 25.0%
! TAAATTCACCACCATATTTA+TGG + chr2_2:6512354-6512373 None:intergenic 25.0%
! TTTATTTCACTGCAAATTCA+TGG - chr2_2:6512370-6512389 Msa0234050:three_prime_UTR 25.0%
! CAGTTATGAATAAATTCTTG+TGG - chr2_2:6512469-6512488 Msa0234050:CDS 25.0%
!!! ATTCTTGTGGAATTTTTCAA+TGG - chr2_2:6512482-6512501 Msa0234050:CDS 25.0%
!!! TTTGTTTTGTTTTGTGTGAA+TGG - chr2_2:6512732-6512751 Msa0234050:intron 25.0%
! ATAGATCAGGAAACAATAAT+TGG + chr2_2:6512861-6512880 None:intergenic 25.0%
! AATTATGTTAAGACTTTCGA+CGG - chr2_2:6513039-6513058 Msa0234050:intron 25.0%
! GAATTCTAATTTACAAGGTT+AGG - chr2_2:6513277-6513296 Msa0234050:intron 25.0%
!! CATTATGAACTGAGAAATTT+TGG - chr2_2:6513320-6513339 Msa0234050:intron 25.0%
! ATGAAAGAAAAGCAAGTATT+AGG - chr2_2:6513605-6513624 Msa0234050:intron 25.0%
! TGAAAGAAAAGCAAGTATTA+GGG - chr2_2:6513606-6513625 Msa0234050:intron 25.0%
!!! GTTTTAAGAAGTATGAAGTT+TGG - chr2_2:6514023-6514042 Msa0234050:intron 25.0%
!! CCGTATGATTTCTTTTTATA+TGG - chr2_2:6514099-6514118 Msa0234050:intron 25.0%
! TCACATACATGATTCTATAT+AGG - chr2_2:6514161-6514180 Msa0234050:intron 25.0%
!! TCGTAAGTCTTGTATTAATT+CGG - chr2_2:6514215-6514234 Msa0234050:intron 25.0%
!! TTGTATTAATTCGGTTTGTT+TGG - chr2_2:6514224-6514243 Msa0234050:intron 25.0%
! ACTTAAAGATGCTCAAAAAA+TGG - chr2_2:6514403-6514422 Msa0234050:intron 25.0%
! CTTAAAGATGCTCAAAAAAT+GGG - chr2_2:6514404-6514423 Msa0234050:intron 25.0%
! ACAAGTATCAATATGAGATT+CGG + chr2_2:6514445-6514464 None:intergenic 25.0%
!!! GAATCTTTAAAATTGGAGTT+GGG + chr2_2:6514588-6514607 None:intergenic 25.0%
!!! ATCATTAGTTTTGAATTGTG+TGG - chr2_2:6514696-6514715 Msa0234050:intron 25.0%
! TAAGTATATATGTCATGCAT+AGG + chr2_2:6514878-6514897 None:intergenic 25.0%
! TCAAATCATGGTTTGAATTT+CGG + chr2_2:6515294-6515313 None:intergenic 25.0%
!!! TTTTAAAATGGCTCAAATCA+TGG + chr2_2:6515306-6515325 None:intergenic 25.0%
! AAAGGTTATTAAAATCGAGT+TGG + chr2_2:6515393-6515412 None:intergenic 25.0%
!!! AACTCGATTTTAATAACCTT+TGG - chr2_2:6515392-6515411 Msa0234050:CDS 25.0%
! TGAGATTACAATGATTTGAA+AGG - chr2_2:6515483-6515502 Msa0234050:CDS 25.0%
!!! ATTTTCTTCTGGAACTATTA+CGG - chr2_2:6515518-6515537 Msa0234050:CDS 25.0%
! TATATACATATTGTCTGAGT+GGG - chr2_2:6515681-6515700 Msa0234050:intron 25.0%
!!! TTTTTTTTTGATGCATGGTA+GGG + chr2_2:6515715-6515734 None:intergenic 25.0%
!!! TTTTTTTTTTGATGCATGGT+AGG + chr2_2:6515716-6515735 None:intergenic 25.0%
!! GAGTTATTTATAGCCTTTTT+GGG - chr2_2:6515836-6515855 Msa0234050:intron 25.0%
! TGAATGATAAGTATTCTATG+TGG - chr2_2:6516173-6516192 Msa0234050:intron 25.0%
! TTAGGCTTTGCATATTATAT+TGG - chr2_2:6516225-6516244 Msa0234050:intron 25.0%
!!! TTTTAATTATAGTGATGTCC+TGG - chr2_2:6516302-6516321 Msa0234050:intron 25.0%
! CAATGTTCATATATCTTATG+TGG - chr2_2:6516334-6516353 Msa0234050:intron 25.0%
! AAAACAAAGACATTTGAAAG+AGG + chr2_2:6516371-6516390 None:intergenic 25.0%
! TAAGTAATTCAATCTGTACA+AGG + chr2_2:6517049-6517068 None:intergenic 25.0%
! AGATTGAATTACTTATCAAG+AGG - chr2_2:6517054-6517073 Msa0234050:intron 25.0%
! ATTCACCTTAATATCATAAG+AGG + chr2_2:6517095-6517114 None:intergenic 25.0%
!!! ATCAAAGATTTGTTTTAGGA+GGG + chr2_2:6517136-6517155 None:intergenic 25.0%
!!! CATGATCAAAGATTTGTTTT+AGG + chr2_2:6517140-6517159 None:intergenic 25.0%
! TAGACTATGAACCAATATAA+AGG - chr2_2:6517203-6517222 Msa0234050:CDS 25.0%
!! ACTATGAAACTTGTTGTTGT+TGG - chr2_2:6511969-6511988 Msa0234050:three_prime_UTR 30.0%
AGTCAAAACTTAGACAACTT+TGG - chr2_2:6512617-6512636 Msa0234050:CDS 30.0%
!!! ACTCAGATGGAGAATTTTTT+TGG - chr2_2:6512661-6512680 Msa0234050:intron 30.0%
!!! ATTTTGTTTTCTCCACCTTA+TGG - chr2_2:6512760-6512779 Msa0234050:intron 30.0%
TGCAATGCATATTATAGATC+AGG + chr2_2:6512874-6512893 None:intergenic 30.0%
!!! TTTTTTCGCTCAATGTTTCA+AGG - chr2_2:6512918-6512937 Msa0234050:intron 30.0%
ATTATGTTAAGACTTTCGAC+GGG - chr2_2:6513040-6513059 Msa0234050:intron 30.0%
!!! TGTTTCTTTTTCTGGTTCAA+TGG - chr2_2:6513217-6513236 Msa0234050:intron 30.0%
! ATTTACAAGGTTAGGCATTT+TGG - chr2_2:6513285-6513304 Msa0234050:intron 30.0%
ACTTATTTGAGCTTACTTAC+TGG - chr2_2:6513362-6513381 Msa0234050:intron 30.0%
! TTTTCTTTCATGTGTAGACA+TGG + chr2_2:6513596-6513615 None:intergenic 30.0%
! TGAAATTCTGTATTGATCAG+CGG - chr2_2:6513711-6513730 Msa0234050:intron 30.0%
!! CTTTCAAGTTGTAACAAAGA+CGG + chr2_2:6513745-6513764 None:intergenic 30.0%
TCTTTGTTACAACTTGAAAG+AGG - chr2_2:6513745-6513764 Msa0234050:intron 30.0%
!!! CATTCCTTATTTTACGATCA+TGG - chr2_2:6513993-6514012 Msa0234050:intron 30.0%
CTTATGCAAAATCTGAATGA+TGG + chr2_2:6514283-6514302 None:intergenic 30.0%
TCATATATATGGTAAAGCAC+AGG + chr2_2:6514323-6514342 None:intergenic 30.0%
TAAGTCATAGCTTAGAAACT+AGG + chr2_2:6514388-6514407 None:intergenic 30.0%
!! CGAATCTTTAAAATTGGAGT+TGG + chr2_2:6514589-6514608 None:intergenic 30.0%
TAAATGATGTGATCTGATGT+AGG - chr2_2:6514614-6514633 Msa0234050:intron 30.0%
AAATGATGTGATCTGATGTA+GGG - chr2_2:6514615-6514634 Msa0234050:intron 30.0%
CTTGAGATTCTTGATAAACT+TGG - chr2_2:6514803-6514822 Msa0234050:intron 30.0%
CATTATGAAAGAAGGAAACA+GGG - chr2_2:6514906-6514925 Msa0234050:intron 30.0%
AAAGAGGTTCTTCTTTACTT+AGG - chr2_2:6515424-6515443 Msa0234050:CDS 30.0%
!! TGAAATAGCTTTATAAAGGC+CGG - chr2_2:6515452-6515471 Msa0234050:CDS 30.0%
! AGAATCAGGCACAATATTTT+AGG - chr2_2:6515613-6515632 Msa0234050:intron 30.0%
ACAGAATCTAAATACAGTGT+TGG + chr2_2:6515644-6515663 None:intergenic 30.0%
CTATATACATATTGTCTGAG+TGG - chr2_2:6515680-6515699 Msa0234050:intron 30.0%
ATATACATATTGTCTGAGTG+GGG - chr2_2:6515682-6515701 Msa0234050:intron 30.0%
!!! TTTTTTTTGATGCATGGTAG+GGG + chr2_2:6515714-6515733 None:intergenic 30.0%
TGAGTACAATACTGAAACTA+GGG - chr2_2:6515771-6515790 Msa0234050:intron 30.0%
! GGAGTTATTTATAGCCTTTT+TGG - chr2_2:6515835-6515854 Msa0234050:intron 30.0%
TTGTAGGATAATGCTCTAAT+TGG - chr2_2:6516128-6516147 Msa0234050:intron 30.0%
CATACAGCTTTCAATTAAAC+AGG + chr2_2:6516579-6516598 None:intergenic 30.0%
CAGTCTTAAAAGAGTAAACT+CGG - chr2_2:6516665-6516684 Msa0234050:intron 30.0%
AGTCTTAAAAGAGTAAACTC+GGG - chr2_2:6516666-6516685 Msa0234050:intron 30.0%
AGAGTCATAAGGATCAAAAA+GGG + chr2_2:6516808-6516827 None:intergenic 30.0%
TATCTTAAGTGAGAGTCATA+AGG + chr2_2:6516819-6516838 None:intergenic 30.0%
ACAGAAATGTGTTCTTTGAT+GGG - chr2_2:6516853-6516872 Msa0234050:intron 30.0%
ATGTGCCTCTTATGATATTA+AGG - chr2_2:6517087-6517106 Msa0234050:intron 30.0%
!!! GATCAAAGATTTGTTTTAGG+AGG + chr2_2:6517137-6517156 None:intergenic 30.0%
ATCTTTGATCATGAATGCAT+TGG - chr2_2:6517147-6517166 Msa0234050:intron 30.0%
AAAGTCTGCATTCAACTATT+TGG + chr2_2:6517247-6517266 None:intergenic 30.0%
TTGTTGTGGTTACTATTTCA+AGG - chr2_2:6517265-6517284 Msa0234050:five_prime_UTR 30.0%
TGTTGTGGTTACTATTTCAA+GGG - chr2_2:6517266-6517285 Msa0234050:five_prime_UTR 30.0%
TGAGGAAACATGTACATAAG+TGG - chr2_2:6512025-6512044 Msa0234050:three_prime_UTR 35.0%
! TCACTGCAAATTCATGGTTT+TGG - chr2_2:6512376-6512395 Msa0234050:three_prime_UTR 35.0%
ACTCATCAAGAAAAAGTTGC+TGG + chr2_2:6513085-6513104 None:intergenic 35.0%
ATCATATAATTGGGCGTGTA+GGG - chr2_2:6513122-6513141 Msa0234050:intron 35.0%
!!! AGGTTAGGCATTTTGGTTTT+TGG - chr2_2:6513292-6513311 Msa0234050:intron 35.0%
! CTAAATTTTCCTCATGCTGT+AGG - chr2_2:6513549-6513568 Msa0234050:intron 35.0%
GCAAGTATTAGGGAATTCTA+TGG - chr2_2:6513616-6513635 Msa0234050:intron 35.0%
! AGTTTGCATTTTACTGTGTG+TGG - chr2_2:6513675-6513694 Msa0234050:intron 35.0%
TGCTGAGGATAAAAAACAGA+AGG - chr2_2:6513777-6513796 Msa0234050:intron 35.0%
AAAACAGAAGGTTGTATGCA+TGG - chr2_2:6513789-6513808 Msa0234050:intron 35.0%
TTTGAAAGAGAAGAAGAGTG+TGG - chr2_2:6513865-6513884 Msa0234050:intron 35.0%
! AGAAGAGTGTGGAATATGTA+TGG - chr2_2:6513876-6513895 Msa0234050:intron 35.0%
AATAAGGAATGTGTGTGTGA+GGG + chr2_2:6513984-6514003 None:intergenic 35.0%
AAATAAGGAATGTGTGTGTG+AGG + chr2_2:6513985-6514004 None:intergenic 35.0%
CAAGCCATGATCGTAAAATA+AGG + chr2_2:6514000-6514019 None:intergenic 35.0%
!! ATTTTACGATCATGGCTTGT+TGG - chr2_2:6514001-6514020 Msa0234050:intron 35.0%
CCTGTTAGGCATCATATATA+TGG + chr2_2:6514334-6514353 None:intergenic 35.0%
CCATATATATGATGCCTAAC+AGG - chr2_2:6514331-6514350 Msa0234050:intron 35.0%
ACAACATAACCCTCTTCTTA+CGG + chr2_2:6514359-6514378 None:intergenic 35.0%
CAGTATTACACACACATTCA+TGG - chr2_2:6514480-6514499 Msa0234050:intron 35.0%
ATTACATATGGACTTGAGAG+AGG - chr2_2:6514530-6514549 Msa0234050:intron 35.0%
TTACATATGGACTTGAGAGA+GGG - chr2_2:6514531-6514550 Msa0234050:intron 35.0%
TAAAATTGGAGTTGGGTAAG+TGG + chr2_2:6514581-6514600 None:intergenic 35.0%
CCTGTTTCCTTCTTTCATAA+TGG + chr2_2:6514908-6514927 None:intergenic 35.0%
CCATTATGAAAGAAGGAAAC+AGG - chr2_2:6514905-6514924 Msa0234050:intron 35.0%
GTGTTCTCACTTACTTTACT+TGG + chr2_2:6514963-6514982 None:intergenic 35.0%
AGTGAGAACACATTCATTGA+AGG - chr2_2:6514972-6514991 Msa0234050:intron 35.0%
AACTGTTTGGAAACAAGGTT+AGG + chr2_2:6515227-6515246 None:intergenic 35.0%
TGAATTTCGGAGACAAGAAA+GGG + chr2_2:6515281-6515300 None:intergenic 35.0%
TTGAATTTCGGAGACAAGAA+AGG + chr2_2:6515282-6515301 None:intergenic 35.0%
!! GAAATAGCTTTATAAAGGCC+GGG - chr2_2:6515453-6515472 Msa0234050:CDS 35.0%
TATACATATTGTCTGAGTGG+GGG - chr2_2:6515683-6515702 Msa0234050:intron 35.0%
GTGAGTACAATACTGAAACT+AGG - chr2_2:6515770-6515789 Msa0234050:intron 35.0%
CTAGGGTTTAGTATCTGATT+AGG - chr2_2:6515788-6515807 Msa0234050:intron 35.0%
AGGCTATAAATAACTCCCTT+GGG + chr2_2:6515832-6515851 None:intergenic 35.0%
AAGGCTATAAATAACTCCCT+TGG + chr2_2:6515833-6515852 None:intergenic 35.0%
TATGCGTTTCTACCTATCTT+GGG + chr2_2:6515893-6515912 None:intergenic 35.0%
ATATGCGTTTCTACCTATCT+TGG + chr2_2:6515894-6515913 None:intergenic 35.0%
AGCCAGAATATCCATATTTG+GGG + chr2_2:6515921-6515940 None:intergenic 35.0%
CAGCCAGAATATCCATATTT+GGG + chr2_2:6515922-6515941 None:intergenic 35.0%
TCAGCCAGAATATCCATATT+TGG + chr2_2:6515923-6515942 None:intergenic 35.0%
GACCACCAATACTCAAATAA+GGG + chr2_2:6516045-6516064 None:intergenic 35.0%
ATTATCCTACAAATGAACCC+TGG + chr2_2:6516120-6516139 None:intergenic 35.0%
ATGCTCTAATTGGAACTTAC+TGG - chr2_2:6516138-6516157 Msa0234050:intron 35.0%
TGAACATTGAAAACAGTTCC+AGG + chr2_2:6516323-6516342 None:intergenic 35.0%
GAAACTTGGTTAGACAACTA+CGG + chr2_2:6516412-6516431 None:intergenic 35.0%
GTAGTTGTCTAACCAAGTTT+CGG - chr2_2:6516411-6516430 Msa0234050:intron 35.0%
AGAAAACAATCACCGAAACT+TGG + chr2_2:6516426-6516445 None:intergenic 35.0%
CTTGGTACACAACAAAATTG+TGG - chr2_2:6516519-6516538 Msa0234050:intron 35.0%
TTAAGACTGTCACGACAAAA+GGG + chr2_2:6516654-6516673 None:intergenic 35.0%
! TTTAAGACTGTCACGACAAA+AGG + chr2_2:6516655-6516674 None:intergenic 35.0%
TAACAAGAGAGAACCTTAGA+AGG - chr2_2:6516739-6516758 Msa0234050:intron 35.0%
TGTACATGAAAAGCCTTCTA+AGG + chr2_2:6516755-6516774 None:intergenic 35.0%
TAAGGATCAAAAAGGGATTC+TGG + chr2_2:6516801-6516820 None:intergenic 35.0%
GAGAGTCATAAGGATCAAAA+AGG + chr2_2:6516809-6516828 None:intergenic 35.0%
CACAGAAATGTGTTCTTTGA+TGG - chr2_2:6516852-6516871 Msa0234050:intron 35.0%
AGTTGGTCATGAAGTTGAAA+TGG - chr2_2:6516992-6517011 Msa0234050:intron 35.0%
!!! AAGATTTGTTTTAGGAGGGA+GGG + chr2_2:6517132-6517151 None:intergenic 35.0%
!!! AAAGATTTGTTTTAGGAGGG+AGG + chr2_2:6517133-6517152 None:intergenic 35.0%
TTGATCATGAATGCATTGGA+TGG - chr2_2:6517151-6517170 Msa0234050:CDS 35.0%
TGGTTCATAGTCTAAGTTGT+TGG + chr2_2:6517197-6517216 None:intergenic 35.0%
GGAAACATGTACATAAGTGG+TGG - chr2_2:6512028-6512047 Msa0234050:three_prime_UTR 40.0%
! TTCCATGGGAAGGTCTTTTA+AGG - chr2_2:6512057-6512076 Msa0234050:three_prime_UTR 40.0%
TTCCTTAAAAGACCTTCCCA+TGG + chr2_2:6512062-6512081 None:intergenic 40.0%
! AACAGTGTCTCTGTCTTGTT+GGG - chr2_2:6512424-6512443 Msa0234050:exon 40.0%
GTACAACACAAAGGTAGTGA+AGG + chr2_2:6512643-6512662 None:intergenic 40.0%
ACCTTTGTGTTGTACTCAGA+TGG - chr2_2:6512648-6512667 Msa0234050:intron 40.0%
TCCATCTGAGTACAACACAA+AGG + chr2_2:6512652-6512671 None:intergenic 40.0%
TTTCTCCACCTTATGGTATG+TGG - chr2_2:6512767-6512786 Msa0234050:intron 40.0%
TTCTCCACCTTATGGTATGT+GGG - chr2_2:6512768-6512787 Msa0234050:intron 40.0%
TGTTAGCAGGGATAGTACTT+TGG - chr2_2:6512802-6512821 Msa0234050:intron 40.0%
CTGTATTTGTGATGAGTCTC+TGG - chr2_2:6512947-6512966 Msa0234050:intron 40.0%
TGATGAGTCTCTGGTGAAAT+TGG - chr2_2:6512956-6512975 Msa0234050:intron 40.0%
! GGTGAAATTGGACTAGAGAA+AGG - chr2_2:6512968-6512987 Msa0234050:intron 40.0%
TCAAGAAAAAGTTGCTGGAG+AGG + chr2_2:6513080-6513099 None:intergenic 40.0%
GATCATATAATTGGGCGTGT+AGG - chr2_2:6513121-6513140 Msa0234050:intron 40.0%
!! AGCGCACTTGTTTCTTTTTC+TGG - chr2_2:6513209-6513228 Msa0234050:intron 40.0%
GCATAAACACTTGTCAGACT+GGG - chr2_2:6513384-6513403 Msa0234050:intron 40.0%
ACCATTCATGGTAGCATTTC+AGG + chr2_2:6513948-6513967 None:intergenic 40.0%
! CAGATTTTGCATAAGCGACA+TGG - chr2_2:6514288-6514307 Msa0234050:intron 40.0%
! TTTTGAATTGTGTGGTCCAG+TGG - chr2_2:6514704-6514723 Msa0234050:intron 40.0%
GACTTCACTAAAGGGTGAAA+GGG + chr2_2:6514739-6514758 None:intergenic 40.0%
GCAAGTGAGAACACAATCAT+TGG - chr2_2:6515014-6515033 Msa0234050:intron 40.0%
GTGAGAACACAATCATTGGA+TGG - chr2_2:6515018-6515037 Msa0234050:intron 40.0%
GTTGCAACTGTTTGGAAACA+AGG + chr2_2:6515232-6515251 None:intergenic 40.0%
TGTTTCCAAACAGTTGCAAC+TGG - chr2_2:6515232-6515251 Msa0234050:intron 40.0%
GACTCAATTTCGCGAGTTTA+AGG + chr2_2:6515360-6515379 None:intergenic 40.0%
TTGTAATCTCACACTAGTCC+CGG + chr2_2:6515474-6515493 None:intergenic 40.0%
!!! AGCGTGTTGCTATTTTCTTC+TGG - chr2_2:6515507-6515526 Msa0234050:CDS 40.0%
TTAGATTCTGTCAGTCTCTC+AGG - chr2_2:6515653-6515672 Msa0234050:intron 40.0%
TATCTGATTAGGTCATGCCT+TGG - chr2_2:6515799-6515818 Msa0234050:intron 40.0%
ATCTGATTAGGTCATGCCTT+GGG - chr2_2:6515800-6515819 Msa0234050:intron 40.0%
ACGTAATAAGAGGCCCAAAA+AGG + chr2_2:6515852-6515871 None:intergenic 40.0%
GGAGTAAGTCACGTAATAAG+AGG + chr2_2:6515862-6515881 None:intergenic 40.0%
TACCTATCTTGGGTGACTTA+GGG + chr2_2:6515883-6515902 None:intergenic 40.0%
CCAGAATATCCATATTTGGG+GGG + chr2_2:6515919-6515938 None:intergenic 40.0%
GCCAGAATATCCATATTTGG+GGG + chr2_2:6515920-6515939 None:intergenic 40.0%
! GGATATTCTGGCTGAATATC+TGG - chr2_2:6515928-6515947 Msa0234050:intron 40.0%
GGACCACCAATACTCAAATA+AGG + chr2_2:6516046-6516065 None:intergenic 40.0%
AACCCAGACTGTTGTTCTTT+AGG - chr2_2:6516207-6516226 Msa0234050:intron 40.0%
AGCCTAAAGAACAACAGTCT+GGG + chr2_2:6516212-6516231 None:intergenic 40.0%
AAGCCTAAAGAACAACAGTC+TGG + chr2_2:6516213-6516232 None:intergenic 40.0%
TAAGACTGTCACGACAAAAG+GGG + chr2_2:6516653-6516672 None:intergenic 40.0%
TCTGGATATTCACCGATAGT+AGG - chr2_2:6516694-6516713 Msa0234050:intron 40.0%
CTGGATATTCACCGATAGTA+GGG - chr2_2:6516695-6516714 Msa0234050:intron 40.0%
GTCTACTATGTCCCTACTAT+CGG + chr2_2:6516709-6516728 None:intergenic 40.0%
TAGTAGGGACATAGTAGACA+TGG - chr2_2:6516710-6516729 Msa0234050:intron 40.0%
AGGGATTCTGGTATGATCAA+AGG + chr2_2:6516789-6516808 None:intergenic 40.0%
GAAATGTGTTCTTTGATGGG+TGG - chr2_2:6516856-6516875 Msa0234050:intron 40.0%
GTTGAATGCAGACTTTGTTG+TGG - chr2_2:6517251-6517270 Msa0234050:five_prime_UTR 40.0%
AAGTGGTGGTTCTTCTTCCA+TGG - chr2_2:6512042-6512061 Msa0234050:three_prime_UTR 45.0%
AGTGGTGGTTCTTCTTCCAT+GGG - chr2_2:6512043-6512062 Msa0234050:three_prime_UTR 45.0%
AGACACTGTTGATCGTTGAG+TGG + chr2_2:6512414-6512433 None:intergenic 45.0%
CAACAGTGTCTCTGTCTTGT+TGG - chr2_2:6512423-6512442 Msa0234050:exon 45.0%
! ACAGTGTCTCTGTCTTGTTG+GGG - chr2_2:6512425-6512444 Msa0234050:exon 45.0%
TCTCCACCTTATGGTATGTG+GGG - chr2_2:6512769-6512788 Msa0234050:intron 45.0%
ACAATGCCCCACATACCATA+AGG + chr2_2:6512778-6512797 None:intergenic 45.0%
GGCATTGTCACATGTTAGCA+GGG - chr2_2:6512790-6512809 Msa0234050:intron 45.0%
! TGGACTAGAGAAAGGTTTCG+AGG - chr2_2:6512976-6512995 Msa0234050:intron 45.0%
!! TAGGGCATCTGATTTTCCGA+GGG - chr2_2:6513140-6513159 Msa0234050:intron 45.0%
! GATTTTCCGAGGGAATACGA+TGG - chr2_2:6513150-6513169 Msa0234050:intron 45.0%
AAAAGAAACAAGTGCGCTGC+TGG + chr2_2:6513207-6513226 None:intergenic 45.0%
TGGACAGATTGCAATCTTGC+TGG - chr2_2:6513237-6513256 Msa0234050:intron 45.0%
GGCATAAACACTTGTCAGAC+TGG - chr2_2:6513383-6513402 Msa0234050:intron 45.0%
ATGCTGTAGGTGTATGTGGA+TGG - chr2_2:6513562-6513581 Msa0234050:intron 45.0%
TGCTGTAGGTGTATGTGGAT+GGG - chr2_2:6513563-6513582 Msa0234050:intron 45.0%
AGAAGGTTGTATGCATGGAG+CGG - chr2_2:6513794-6513813 Msa0234050:intron 45.0%
GTATCGTAGAAGAGAAGACG+AGG - chr2_2:6513816-6513835 Msa0234050:intron 45.0%
CACATGACATGGTTGCAGTT+AGG + chr2_2:6513925-6513944 None:intergenic 45.0%
AGCATTTCAGGCACATGACA+TGG + chr2_2:6513936-6513955 None:intergenic 45.0%
GCCTGAAATGCTACCATGAA+TGG - chr2_2:6513944-6513963 Msa0234050:intron 45.0%
!! GCAAGAGAGAGTACCATTCA+TGG + chr2_2:6513960-6513979 None:intergenic 45.0%
! TAACAGGCACCGTAAGAAGA+GGG - chr2_2:6514347-6514366 Msa0234050:intron 45.0%
AATTGGAGTTGGGTAAGTGG+TGG + chr2_2:6514578-6514597 None:intergenic 45.0%
GGACTTCACTAAAGGGTGAA+AGG + chr2_2:6514740-6514759 None:intergenic 45.0%
! GAGCAACGGACTTCACTAAA+GGG + chr2_2:6514747-6514766 None:intergenic 45.0%
! AGAGCAACGGACTTCACTAA+AGG + chr2_2:6514748-6514767 None:intergenic 45.0%
TCCTCGCATCTAAAGAGCAA+CGG + chr2_2:6514761-6514780 None:intergenic 45.0%
TTGCTCTTTAGATGCGAGGA+AGG - chr2_2:6514761-6514780 Msa0234050:intron 45.0%
CTGACTCACGATCTTCAAAC+AGG + chr2_2:6515100-6515119 None:intergenic 45.0%
! AGATCGTGAGTCAGCATTGA+AGG - chr2_2:6515106-6515125 Msa0234050:intron 45.0%
!! GAAGGCTTAGTTTGCGTTGT+TGG - chr2_2:6515124-6515143 Msa0234050:intron 45.0%
!!! AGACTTTTTTTCGCGTCACC+AGG - chr2_2:6515153-6515172 Msa0234050:intron 45.0%
!!! TTTTTTTCGCGTCACCAGGA+TGG - chr2_2:6515157-6515176 Msa0234050:intron 45.0%
CGCAAACAAAATCTCCATCC+TGG + chr2_2:6515174-6515193 None:intergenic 45.0%
TTTGCGTCATCCACGACAAT+AGG - chr2_2:6515188-6515207 Msa0234050:intron 45.0%
TGTCACAGAACCTATTGTCG+TGG + chr2_2:6515201-6515220 None:intergenic 45.0%
CTCATCCAGTTGCAACTGTT+TGG + chr2_2:6515240-6515259 None:intergenic 45.0%
CCTCTTTATGCTTGCTCCAA+AGG + chr2_2:6515411-6515430 None:intergenic 45.0%
!! CCTTTGGAGCAAGCATAAAG+AGG - chr2_2:6515408-6515427 Msa0234050:CDS 45.0%
CTACCTATCTTGGGTGACTT+AGG + chr2_2:6515884-6515903 None:intergenic 45.0%
CGCATATATCCCCCCAAATA+TGG - chr2_2:6515907-6515926 Msa0234050:intron 45.0%
CCCCCCAAATATGGATATTC+TGG - chr2_2:6515916-6515935 Msa0234050:intron 45.0%
!! GGCCCTTATTTGAGTATTGG+TGG - chr2_2:6516040-6516059 Msa0234050:intron 45.0%
TTAACCAAGACTCATGCTCG+GGG + chr2_2:6516075-6516094 None:intergenic 45.0%
CTTAACCAAGACTCATGCTC+GGG + chr2_2:6516076-6516095 None:intergenic 45.0%
CCTTAACCAAGACTCATGCT+CGG + chr2_2:6516077-6516096 None:intergenic 45.0%
CGAGCATGAGTCTTGGTTAA+GGG - chr2_2:6516075-6516094 Msa0234050:CDS 45.0%
GTTAAGGGCGAAGTGGTTAT+TGG - chr2_2:6516090-6516109 Msa0234050:CDS 45.0%
CAACAGTCTGGGTTCATACT+CGG + chr2_2:6516201-6516220 None:intergenic 45.0%
! TTCTTTTCTGCCTCGTGTCT+TGG - chr2_2:6516501-6516520 Msa0234050:intron 45.0%
TTGTTGTGTACCAAGACACG+AGG + chr2_2:6516514-6516533 None:intergenic 45.0%
! GTGTTCTTTGATGGGTGGTT+CGG - chr2_2:6516861-6516880 Msa0234050:intron 45.0%
AACTCAAGGCTGGAATCTTC+TGG + chr2_2:6516965-6516984 None:intergenic 45.0%
ACCAACTCATCGCAAACTCA+AGG + chr2_2:6516979-6516998 None:intergenic 45.0%
!!! CATTTTTTTATTTTTTAAAA+TGG + chr2_2:6515318-6515337 None:intergenic 5.0%
GTGGTTCTTCTTCCATGGGA+AGG - chr2_2:6512047-6512066 Msa0234050:three_prime_UTR 50.0%
ATGCCCCACATACCATAAGG+TGG + chr2_2:6512775-6512794 None:intergenic 50.0%
! GGGCATTGTCACATGTTAGC+AGG - chr2_2:6512789-6512808 Msa0234050:intron 50.0%
!! GTAGGGCATCTGATTTTCCG+AGG - chr2_2:6513139-6513158 Msa0234050:intron 50.0%
CCACATACACCTACAGCATG+AGG + chr2_2:6513561-6513580 None:intergenic 50.0%
CCTCATGCTGTAGGTGTATG+TGG - chr2_2:6513558-6513577 Msa0234050:intron 50.0%
!! AAGAGGTGTCACTGATGCTG+AGG - chr2_2:6513762-6513781 Msa0234050:intron 50.0%
CTCTTCTTACGGTGCCTGTT+AGG + chr2_2:6514348-6514367 None:intergenic 50.0%
! CTAACAGGCACCGTAAGAAG+AGG - chr2_2:6514346-6514365 Msa0234050:intron 50.0%
GAAAGGGCAATGATCACCAC+TGG + chr2_2:6514723-6514742 None:intergenic 50.0%
TCCGTTGCTCTTTAGATGCG+AGG - chr2_2:6514757-6514776 Msa0234050:intron 50.0%
CTGCTCGCTCGAAATAGAGA+GGG - chr2_2:6515072-6515091 Msa0234050:intron 50.0%
TGCTCGCTCGAAATAGAGAG+GGG - chr2_2:6515073-6515092 Msa0234050:intron 50.0%
TTTGATGCATGGTAGGGGCA+AGG + chr2_2:6515709-6515728 None:intergenic 50.0%
ATGCCTTGGGAATGATCCCA+AGG - chr2_2:6515813-6515832 Msa0234050:intron 50.0%
TGCCTTGGGAATGATCCCAA+GGG - chr2_2:6515814-6515833 Msa0234050:intron 50.0%
CTCCCTAAGTCACCCAAGAT+AGG - chr2_2:6515878-6515897 Msa0234050:intron 50.0%
! AGGTTCGGGCTTGATGGTTT+CGG - chr2_2:6515956-6515975 Msa0234050:intron 50.0%
! CTTGATGGTTTCGGGGGATA+AGG - chr2_2:6515965-6515984 Msa0234050:intron 50.0%
ATGGTTTCGGGGGATAAGGA+GGG - chr2_2:6515969-6515988 Msa0234050:intron 50.0%
GTAGGCGACGTCCTTGTATA+GGG - chr2_2:6516011-6516030 Msa0234050:CDS 50.0%
ACGTCCTTGTATAGGGCTAG+CGG - chr2_2:6516018-6516037 Msa0234050:intron 50.0%
! GCGGGCCCTTATTTGAGTAT+TGG - chr2_2:6516037-6516056 Msa0234050:intron 50.0%
TAACCAAGACTCATGCTCGG+GGG + chr2_2:6516074-6516093 None:intergenic 50.0%
CCGAGCATGAGTCTTGGTTA+AGG - chr2_2:6516074-6516093 Msa0234050:CDS 50.0%
AGTCTTGGTTAAGGGCGAAG+TGG - chr2_2:6516083-6516102 Msa0234050:CDS 50.0%
AAGGGCGAAGTGGTTATTGG+CGG - chr2_2:6516093-6516112 Msa0234050:CDS 50.0%
AAGTGGTTATTGGCGGTCCA+GGG - chr2_2:6516100-6516119 Msa0234050:CDS 50.0%
! TCTTTGATGGGTGGTTCGGA+TGG - chr2_2:6516865-6516884 Msa0234050:intron 50.0%
! CTGGAATCTTCTGGAAGACG+TGG + chr2_2:6516956-6516975 None:intergenic 50.0%
ACTCATCGCAAACTCAAGGC+TGG + chr2_2:6516975-6516994 None:intergenic 50.0%
GCCTTGAGTTTGCGATGAGT+TGG - chr2_2:6516975-6516994 Msa0234050:intron 50.0%
CACGCACCATCGTATTCCCT+CGG + chr2_2:6513159-6513178 None:intergenic 55.0%
TGCAATCTTGCTGGAGCCCT+TGG - chr2_2:6513246-6513265 Msa0234050:intron 55.0%
ATGCGAGGAAGGAGCAAGCA+AGG - chr2_2:6514772-6514791 Msa0234050:intron 55.0%
CGAGCGAGCAGCAAACTGAA+CGG + chr2_2:6515063-6515082 None:intergenic 55.0%
GCTGCTCGCTCGAAATAGAG+AGG - chr2_2:6515071-6515090 Msa0234050:intron 55.0%
CTCCCTTGGGATCATTCCCA+AGG + chr2_2:6515819-6515838 None:intergenic 55.0%
! GGTTCGGGCTTGATGGTTTC+GGG - chr2_2:6515957-6515976 Msa0234050:intron 55.0%
! GTTCGGGCTTGATGGTTTCG+GGG - chr2_2:6515958-6515977 Msa0234050:intron 55.0%
! TTCGGGCTTGATGGTTTCGG+GGG - chr2_2:6515959-6515978 Msa0234050:intron 55.0%
GATGGTTTCGGGGGATAAGG+AGG - chr2_2:6515968-6515987 Msa0234050:intron 55.0%
TGGTTTCGGGGGATAAGGAG+GGG - chr2_2:6515970-6515989 Msa0234050:intron 55.0%
CGTAGGCGACGTCCTTGTAT+AGG - chr2_2:6516010-6516029 Msa0234050:CDS 55.0%
! CGTCCTTGTATAGGGCTAGC+GGG - chr2_2:6516019-6516038 Msa0234050:intron 55.0%
GAAGTGGTTATTGGCGGTCC+AGG - chr2_2:6516099-6516118 Msa0234050:CDS 55.0%
GCGGTCCAGGGTTCATTTGT+AGG - chr2_2:6516112-6516131 Msa0234050:CDS 55.0%
GAGTAAACTCGGGCGATCTC+TGG - chr2_2:6516676-6516695 Msa0234050:intron 55.0%
AGCATGCCCTACGCAAGCGT+AGG - chr2_2:6515993-6516012 Msa0234050:CDS 60.0%
ACGTCGCCTACGCTTGCGTA+GGG + chr2_2:6516002-6516021 None:intergenic 60.0%
AGTCCCCCGAGCATGAGTCT+TGG - chr2_2:6516068-6516087 Msa0234050:CDS 60.0%
GACGTCGCCTACGCTTGCGT+AGG + chr2_2:6516003-6516022 None:intergenic 65.0%
GGGCCCGCTAGCCCTATACA+AGG + chr2_2:6516025-6516044 None:intergenic 65.0%
GACTCATGCTCGGGGGACTG+TGG + chr2_2:6516067-6516086 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 6511954 6517322 6511954 ID=Msa0234050;Name=Msa0234050
chr2_2 mRNA 6511954 6517322 6511954 ID=Msa0234050-mRNA-1;Parent=Msa0234050;Name=Msa0234050-mRNA-1;_AED=0.17;_eAED=0.17;_QI=80|0.25|0.4|1|0.25|0.4|5|483|212
chr2_2 exon 6511954 6512647 6511954 ID=Msa0234050-mRNA-1:exon:2937;Parent=Msa0234050-mRNA-1
chr2_2 exon 6515335 6515545 6515335 ID=Msa0234050-mRNA-1:exon:2936;Parent=Msa0234050-mRNA-1
chr2_2 exon 6515983 6516032 6515983 ID=Msa0234050-mRNA-1:exon:2935;Parent=Msa0234050-mRNA-1
chr2_2 exon 6516059 6516133 6516059 ID=Msa0234050-mRNA-1:exon:2934;Parent=Msa0234050-mRNA-1
chr2_2 exon 6517151 6517322 6517151 ID=Msa0234050-mRNA-1:exon:2933;Parent=Msa0234050-mRNA-1
chr2_2 five_prime_UTR 6517243 6517322 6517243 ID=Msa0234050-mRNA-1:five_prime_utr;Parent=Msa0234050-mRNA-1
chr2_2 CDS 6517151 6517242 6517151 ID=Msa0234050-mRNA-1:cds;Parent=Msa0234050-mRNA-1
chr2_2 CDS 6516059 6516133 6516059 ID=Msa0234050-mRNA-1:cds;Parent=Msa0234050-mRNA-1
chr2_2 CDS 6515983 6516032 6515983 ID=Msa0234050-mRNA-1:cds;Parent=Msa0234050-mRNA-1
chr2_2 CDS 6515335 6515545 6515335 ID=Msa0234050-mRNA-1:cds;Parent=Msa0234050-mRNA-1
chr2_2 CDS 6512437 6512647 6512437 ID=Msa0234050-mRNA-1:cds;Parent=Msa0234050-mRNA-1
chr2_2 three_prime_UTR 6511954 6512436 6511954 ID=Msa0234050-mRNA-1:three_prime_utr;Parent=Msa0234050-mRNA-1
Gene Sequence

>Msa0234050

ATGTACATAAGTGGTGGTTCTTCTTCCATGGGAAGGTCTTTTAAGGAATCTCTTAAACTGCTTGAAGCTGATATTCATCATGCCAATACCTTGGCATCTGATTTTCCGAGGGAATACGATGGTGCGTGTCTTCAGATGAGAATGTCATACAGTCCAGCAGCGCACTTATTGCAATCTTGCTGGAGCCCTTGGATTATTAAGAATTCTAATTTACAAGCGGTCATATATCCGTCTTTGTTACAACTTGAAAGAGGTGTCACTGATGCTGAGGATAAAAAACAGAAGGTTGTATGCATGGAGCGGTATCGTAGAAGAGAAGACGAGGAGCACAAACAATTCTCAGACATAGACTTTGAAAGAGAAGAAGAGTGTGGAATATGTATGGAGATGAATAGCAAGATTGTGTTGCCTAACTGCAACCATGTCATGAGAGCAAGATCACAGTCATGCCCCTTTTGTCGTGACAGTCTTAAAAGAGTAAACTCGGGCGATCTCTGGATATTCACCGATAGTAGGGACATAGTAGACATGGAAACAGTAACAAGAGAGAACCTTAGAAGGCTTTTCATGTACATAGATAAGTTACCTTTGATCATACCAGAATCCCTTTTTGATCCTTATGACTCTCACTTAAGATAA
Protein sequence

>Msa0234050

MYISGGSSSMGRSFKESLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLLQSCWSPWIIKNSNLQAVIYPSLLQLERGVTDAEDKKQKVVCMERYRRREDEEHKQFSDIDFEREEECGICMEMNSKIVLPNCNHVMRARSQSCPFCRDSLKRVNSGDLWIFTDSRDIVDMETVTRENLRRLFMYIDKLPLIIPESLFDPYDSHLR*