Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373890 | XP_013449825.1 | 97.248 | 218 | 6 | 0 | 1 | 218 | 1 | 218 | 1.24e-154 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373890 | sp|P13089|AUX28_SOYBN | 75.688 | 218 | 34 | 7 | 11 | 218 | 1 | 209 | 7.24e-105 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373890 | I3SRI4 | 97.248 | 218 | 6 | 0 | 1 | 218 | 1 | 218 | 5.93e-155 | 440 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1373890 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1036330 | Msa1373890 | 0.968453 | 1.064678e-128 | -8.615850e-47 |
| Msa1076610 | Msa1373890 | 0.926082 | 7.632510e-91 | -8.615850e-47 |
| Msa1133640 | Msa1373890 | 0.925972 | 8.880097e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373890 | MtrunA17_Chr7g0260641 | 97.248 | 218 | 6 | 0 | 1 | 218 | 1 | 218 | 1.14e-158 | 440 |
| Msa1373890 | MtrunA17_Chr1g0184791 | 70.044 | 227 | 45 | 9 | 1 | 218 | 1 | 213 | 2.63e-97 | 285 |
| Msa1373890 | MtrunA17_Chr1g0187921 | 62.150 | 214 | 58 | 5 | 11 | 218 | 8 | 204 | 8.22e-78 | 235 |
| Msa1373890 | MtrunA17_Chr1g0190711 | 58.879 | 214 | 75 | 5 | 11 | 218 | 15 | 221 | 2.18e-72 | 221 |
| Msa1373890 | MtrunA17_Chr8g0366881 | 42.126 | 254 | 105 | 6 | 7 | 218 | 63 | 316 | 1.52e-50 | 169 |
| Msa1373890 | MtrunA17_Chr5g0428141 | 65.079 | 126 | 42 | 2 | 94 | 218 | 191 | 315 | 1.76e-50 | 168 |
| Msa1373890 | MtrunA17_Chr5g0411501 | 63.281 | 128 | 44 | 2 | 94 | 218 | 176 | 303 | 8.35e-50 | 166 |
| Msa1373890 | MtrunA17_Chr2g0331411 | 63.281 | 128 | 42 | 3 | 94 | 217 | 167 | 293 | 2.43e-49 | 165 |
| Msa1373890 | MtrunA17_Chr6g0486121 | 47.222 | 180 | 77 | 4 | 40 | 217 | 58 | 221 | 9.57e-47 | 156 |
| Msa1373890 | MtrunA17_Chr8g0390281 | 57.031 | 128 | 51 | 2 | 94 | 218 | 135 | 261 | 1.32e-45 | 154 |
| Msa1373890 | MtrunA17_Chr1g0187961 | 51.908 | 131 | 37 | 5 | 89 | 218 | 53 | 158 | 6.94e-38 | 131 |
| Msa1373890 | MtrunA17_Chr1g0166011 | 53.906 | 128 | 33 | 5 | 92 | 218 | 60 | 162 | 6.63e-37 | 129 |
| Msa1373890 | MtrunA17_Chr1g0184801 | 53.968 | 126 | 34 | 4 | 94 | 218 | 79 | 181 | 1.05e-36 | 129 |
| Msa1373890 | MtrunA17_Chr7g0260621 | 38.679 | 212 | 85 | 8 | 11 | 218 | 11 | 181 | 8.99e-35 | 124 |
| Msa1373890 | MtrunA17_Chr2g0332141 | 57.609 | 92 | 28 | 4 | 130 | 217 | 3 | 87 | 3.40e-26 | 99.0 |
| Msa1373890 | MtrunA17_Chr4g0004181 | 46.721 | 122 | 38 | 3 | 97 | 218 | 52 | 146 | 5.37e-25 | 97.8 |
| Msa1373890 | MtrunA17_Chr1g0183251 | 36.471 | 170 | 70 | 5 | 85 | 217 | 67 | 235 | 5.74e-22 | 92.0 |
| Msa1373890 | MtrunA17_Chr2g0330951 | 37.162 | 148 | 70 | 3 | 93 | 217 | 90 | 237 | 1.43e-20 | 88.2 |
| Msa1373890 | MtrunA17_Chr8g0340731 | 35.762 | 151 | 79 | 2 | 85 | 217 | 93 | 243 | 3.08e-20 | 87.0 |
| Msa1373890 | MtrunA17_Chr4g0069561 | 34.351 | 131 | 62 | 5 | 88 | 218 | 61 | 167 | 1.56e-13 | 67.0 |
| Msa1373890 | MtrunA17_Chr1g0193861 | 33.028 | 109 | 61 | 1 | 110 | 218 | 61 | 157 | 1.57e-13 | 67.0 |
| Msa1373890 | MtrunA17_Chr3g0137601 | 26.316 | 152 | 87 | 5 | 72 | 219 | 64 | 194 | 1.16e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373890 | AT4G14550.3 | 61.538 | 208 | 66 | 4 | 11 | 217 | 1 | 195 | 6.55e-78 | 234 |
| Msa1373890 | AT4G14550.1 | 61.538 | 208 | 66 | 4 | 11 | 217 | 1 | 195 | 1.43e-77 | 234 |
| Msa1373890 | AT4G14550.2 | 61.538 | 208 | 66 | 4 | 11 | 217 | 1 | 195 | 2.14e-77 | 234 |
| Msa1373890 | AT3G23050.2 | 56.951 | 223 | 63 | 7 | 11 | 218 | 6 | 210 | 3.44e-74 | 225 |
| Msa1373890 | AT3G23050.1 | 56.951 | 223 | 63 | 7 | 11 | 218 | 6 | 210 | 9.45e-74 | 225 |
| Msa1373890 | AT3G04730.1 | 55.605 | 223 | 64 | 6 | 11 | 218 | 2 | 204 | 4.43e-70 | 215 |
| Msa1373890 | AT1G04250.1 | 55.769 | 208 | 73 | 4 | 11 | 217 | 7 | 196 | 4.15e-69 | 213 |
| Msa1373890 | AT2G22670.5 | 43.295 | 261 | 89 | 10 | 3 | 218 | 41 | 287 | 6.33e-51 | 169 |
| Msa1373890 | AT2G22670.2 | 43.295 | 261 | 89 | 10 | 3 | 218 | 41 | 287 | 6.33e-51 | 169 |
| Msa1373890 | AT2G22670.3 | 43.295 | 261 | 89 | 10 | 3 | 218 | 41 | 287 | 6.59e-51 | 169 |
| Msa1373890 | AT2G22670.1 | 43.295 | 261 | 89 | 10 | 3 | 218 | 41 | 287 | 6.59e-51 | 169 |
| Msa1373890 | AT5G65670.1 | 64.800 | 125 | 42 | 1 | 96 | 218 | 180 | 304 | 6.97e-51 | 169 |
| Msa1373890 | AT5G65670.2 | 64.800 | 125 | 42 | 1 | 96 | 218 | 180 | 304 | 7.95e-51 | 169 |
| Msa1373890 | AT2G22670.4 | 43.295 | 261 | 89 | 10 | 3 | 218 | 58 | 304 | 8.27e-51 | 169 |
| Msa1373890 | AT4G29080.1 | 44.215 | 242 | 95 | 7 | 11 | 218 | 38 | 273 | 2.15e-50 | 167 |
| Msa1373890 | AT4G14550.4 | 56.707 | 164 | 57 | 4 | 11 | 173 | 1 | 151 | 1.45e-47 | 156 |
| Msa1373890 | AT3G23050.3 | 51.124 | 178 | 54 | 7 | 11 | 173 | 6 | 165 | 1.82e-43 | 145 |
| Msa1373890 | AT1G04240.1 | 40.476 | 210 | 78 | 5 | 9 | 218 | 3 | 165 | 3.98e-39 | 135 |
| Msa1373890 | AT5G43700.1 | 44.318 | 176 | 63 | 6 | 56 | 218 | 8 | 161 | 1.15e-38 | 133 |
| Msa1373890 | AT1G04240.2 | 40.476 | 210 | 78 | 5 | 9 | 218 | 103 | 265 | 2.87e-38 | 135 |
| Msa1373890 | AT3G23030.1 | 51.200 | 125 | 32 | 2 | 94 | 218 | 55 | 150 | 4.70e-36 | 126 |
| Msa1373890 | AT3G23030.2 | 51.200 | 125 | 32 | 2 | 94 | 218 | 142 | 237 | 2.94e-35 | 127 |
| Msa1373890 | AT3G15540.1 | 37.736 | 212 | 87 | 5 | 6 | 217 | 1 | 167 | 1.53e-32 | 118 |
| Msa1373890 | AT4G14560.1 | 50.781 | 128 | 34 | 4 | 92 | 218 | 48 | 147 | 7.92e-30 | 110 |
| Msa1373890 | AT1G52830.1 | 34.906 | 212 | 89 | 7 | 6 | 217 | 1 | 163 | 1.72e-28 | 107 |
| Msa1373890 | AT1G15580.1 | 35.238 | 210 | 63 | 7 | 10 | 218 | 7 | 144 | 3.24e-28 | 105 |
| Msa1373890 | AT1G04550.2 | 39.865 | 148 | 60 | 5 | 92 | 217 | 62 | 202 | 6.20e-25 | 99.4 |
| Msa1373890 | AT3G16500.1 | 40.244 | 164 | 68 | 6 | 72 | 217 | 84 | 235 | 3.09e-23 | 95.5 |
| Msa1373890 | AT3G16500.2 | 40.244 | 164 | 68 | 6 | 72 | 217 | 84 | 235 | 3.60e-23 | 95.5 |
| Msa1373890 | AT2G33310.3 | 38.621 | 145 | 63 | 5 | 94 | 217 | 70 | 209 | 7.26e-23 | 94.0 |
| Msa1373890 | AT2G33310.1 | 38.621 | 145 | 63 | 5 | 94 | 217 | 70 | 209 | 7.26e-23 | 94.0 |
| Msa1373890 | AT4G28640.1 | 39.706 | 136 | 64 | 3 | 98 | 217 | 87 | 220 | 4.88e-22 | 92.0 |
| Msa1373890 | AT4G28640.3 | 39.706 | 136 | 64 | 3 | 98 | 217 | 87 | 220 | 6.73e-22 | 91.7 |
| Msa1373890 | AT2G33310.2 | 37.333 | 150 | 68 | 5 | 89 | 217 | 66 | 210 | 7.59e-22 | 91.3 |
| Msa1373890 | AT4G28640.2 | 39.855 | 138 | 61 | 4 | 98 | 217 | 87 | 220 | 3.79e-21 | 90.5 |
| Msa1373890 | AT1G51950.1 | 39.865 | 148 | 56 | 5 | 96 | 217 | 93 | 233 | 6.74e-21 | 89.4 |
| Msa1373890 | AT1G04100.1 | 38.356 | 146 | 59 | 5 | 101 | 217 | 95 | 238 | 8.45e-20 | 86.3 |
| Msa1373890 | AT5G25890.1 | 35.503 | 169 | 86 | 5 | 50 | 218 | 2 | 147 | 1.34e-18 | 80.9 |
| Msa1373890 | AT3G17600.1 | 34.109 | 129 | 61 | 3 | 91 | 218 | 36 | 141 | 1.10e-17 | 78.2 |
| Msa1373890 | AT4G32280.1 | 25.843 | 178 | 79 | 6 | 72 | 217 | 70 | 226 | 8.07e-12 | 63.9 |
| Msa1373890 | AT2G46990.1 | 38.824 | 85 | 39 | 1 | 134 | 218 | 86 | 157 | 2.49e-11 | 61.2 |
| Msa1373890 | AT2G46990.2 | 38.824 | 85 | 39 | 1 | 134 | 218 | 86 | 157 | 2.62e-11 | 60.8 |
| Msa1373890 | AT3G62100.1 | 36.364 | 99 | 46 | 2 | 120 | 218 | 74 | 155 | 3.77e-11 | 60.8 |
| Msa1373890 | AT3G62100.2 | 36.364 | 99 | 46 | 2 | 120 | 218 | 74 | 155 | 3.88e-11 | 60.5 |
| Msa1373890 | AT4G32280.2 | 35.714 | 84 | 36 | 2 | 134 | 217 | 119 | 184 | 3.96e-11 | 61.2 |
| Msa1373890 | AT1G04550.1 | 35.849 | 106 | 46 | 3 | 92 | 175 | 62 | 167 | 7.48e-11 | 60.1 |
Find 80 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGTAATTGCATTGAAAT+TGG | 0.190674 | tig0019464:-74635 | None:intergenic |
| AGACTAGGAATTGGATTTCT+TGG | 0.218468 | tig0019464:+72597 | Msa1373890:CDS |
| ATTGGATTTCTTGGAAATAA+TGG | 0.230667 | tig0019464:+72606 | Msa1373890:CDS |
| ATGCAGAAGCCACGAATTAA+TGG | 0.238125 | tig0019464:+77268 | Msa1373890:three_prime_UTR |
| CCAAGTCTAACAACATAATT+TGG | 0.244651 | tig0019464:-77451 | None:intergenic |
| TACATTTGTGAAAGTTAGTA+TGG | 0.256580 | tig0019464:+74651 | Msa1373890:CDS |
| TGGTATGAAGAAGGAGAATA+TGG | 0.277842 | tig0019464:+72554 | Msa1373890:CDS |
| CAAACACACTAATAAGAAAT+AGG | 0.314082 | tig0019464:-77499 | None:intergenic |
| GATGCTTAATCTTTCCTCTA+AGG | 0.319822 | tig0019464:+72713 | Msa1373890:CDS |
| CATGAATGAGAGTAAGTTGA+TGG | 0.332793 | tig0019464:+75287 | Msa1373890:CDS |
| TGATGATGAAACAACTACTA+TGG | 0.333944 | tig0019464:+72686 | Msa1373890:CDS |
| GGGAAACTATAGTGTAGTAT+AGG | 0.336871 | tig0019464:-72416 | None:intergenic |
| GGAAACTATAGTGTAGTATA+GGG | 0.350145 | tig0019464:-72415 | None:intergenic |
| TACTTTGCAGGAGGCTTGGC+AGG | 0.381666 | tig0019464:-72813 | None:intergenic |
| CTCAGCAGTAGCTTCCTTAG+AGG | 0.387015 | tig0019464:-72727 | None:intergenic |
| CCAAATTATGTTGTTAGACT+TGG | 0.399340 | tig0019464:+77451 | Msa1373890:three_prime_UTR |
| ACTGAGCTGAGACTAGGAAT+TGG | 0.412509 | tig0019464:+72588 | Msa1373890:CDS |
| GGAGGCTTGGCAGGATCTGC+AGG | 0.420503 | tig0019464:-72804 | None:intergenic |
| GTCACCATCCTTGTCTTCAT+AGG | 0.428945 | tig0019464:-75340 | None:intergenic |
| TCGCAGCTTTCTGATGCCTT+AGG | 0.429522 | tig0019464:+74724 | Msa1373890:CDS |
| TTGTTTAATAATTAATACTA+AGG | 0.436826 | tig0019464:+77523 | Msa1373890:three_prime_UTR |
| TACCAAAATATGACAAAAGA+TGG | 0.442557 | tig0019464:-77206 | None:intergenic |
| CTGCTATGTCCATTAATTCG+TGG | 0.448078 | tig0019464:-77277 | None:intergenic |
| CCATCCTTGTCTTCATAGGT+TGG | 0.449191 | tig0019464:-75336 | None:intergenic |
| TGGCAGGATCTGCAGGCAAA+AGG | 0.451959 | tig0019464:-72797 | None:intergenic |
| GCATTGCTAACATGTTCTTC+CGG | 0.452829 | tig0019464:-74582 | None:intergenic |
| TACTTACTTTGCAGGAGGCT+TGG | 0.454576 | tig0019464:-72817 | None:intergenic |
| TGGTGGGTTGGCCACCTGTC+CGG | 0.456500 | tig0019464:+74554 | Msa1373890:CDS |
| GAAGGAGAATATGGGATTTG+AGG | 0.458302 | tig0019464:+72563 | Msa1373890:CDS |
| CATCCTTGTCTTCATAGGTT+GGG | 0.472292 | tig0019464:-75335 | None:intergenic |
| TGCTTGTCGGTGACGTCCCA+TGG | 0.474826 | tig0019464:+75367 | Msa1373890:CDS |
| AAGTCTACTTTGCGGAGGTA+AGG | 0.481047 | tig0019464:-74682 | None:intergenic |
| CTGTGAATCTCAAGGAATGA+AGG | 0.485832 | tig0019464:+75260 | Msa1373890:CDS |
| CACGAATTAATGGACATAGC+AGG | 0.487651 | tig0019464:+77278 | Msa1373890:three_prime_UTR |
| GGCCACCTGTCCGGTCGTAC+CGG | 0.489448 | tig0019464:+74563 | Msa1373890:CDS |
| TTTGTGAAAGTTAGTATGGA+TGG | 0.492214 | tig0019464:+74655 | Msa1373890:CDS |
| AAACTCATCATGGAAGTTGT+TGG | 0.509341 | tig0019464:+72534 | Msa1373890:exon |
| GGCAGGATCTGCAGGCAAAA+GGG | 0.516414 | tig0019464:-72796 | None:intergenic |
| ATAGTGTAGTATAGGGGCAA+GGG | 0.530786 | tig0019464:-72408 | None:intergenic |
| CAGCTACTGAAGGAGCTGTA+AGG | 0.531040 | tig0019464:+72637 | Msa1373890:CDS |
| GGAAGTTGTTGGTATGAAGA+AGG | 0.543101 | tig0019464:+72545 | Msa1373890:CDS |
| GAAATAATAATAGTGGTGGA+AGG | 0.545048 | tig0019464:-72437 | None:intergenic |
| ACATGTTCTTCCGGTACGAC+CGG | 0.546140 | tig0019464:-74573 | None:intergenic |
| TGAATGATTTGTTTGCTATG+TGG | 0.547090 | tig0019464:-72459 | None:intergenic |
| TACAGCTCCTTCAGTAGCTG+TGG | 0.551148 | tig0019464:-72634 | None:intergenic |
| GATGGTGACTGGATGCTTGT+CGG | 0.553347 | tig0019464:+75354 | Msa1373890:CDS |
| TATGTATAGGGCTCAAGTGG+TGG | 0.554478 | tig0019464:+74537 | Msa1373890:intron |
| GAAGGAGCTGTAAGGAAGAG+AGG | 0.555584 | tig0019464:+72645 | Msa1373890:CDS |
| CTATGTGGAAATAATAATAG+TGG | 0.557616 | tig0019464:-72444 | None:intergenic |
| ATGTTCAGCTCCTTCACCAT+TGG | 0.558570 | tig0019464:+74751 | Msa1373890:CDS |
| ACAATTTCAAGTCTACTTTG+CGG | 0.559180 | tig0019464:-74690 | None:intergenic |
| TATAGTGTAGTATAGGGGCA+AGG | 0.560326 | tig0019464:-72409 | None:intergenic |
| TTAGTAACTATAAGCCAAGC+AGG | 0.566743 | tig0019464:-77229 | None:intergenic |
| TTCTTCCGGTACGACCGGAC+AGG | 0.571159 | tig0019464:-74568 | None:intergenic |
| GCTTGTCGGTGACGTCCCAT+GGG | 0.572642 | tig0019464:+75368 | Msa1373890:CDS |
| GAGGAAACTGAGCTGAGACT+AGG | 0.573433 | tig0019464:+72582 | Msa1373890:CDS |
| TGTGGAAATAATAATAGTGG+TGG | 0.573954 | tig0019464:-72441 | None:intergenic |
| AAAATTACTTACTTTGCAGG+AGG | 0.575368 | tig0019464:-72822 | None:intergenic |
| TTATTACGTACCAATGGTGA+AGG | 0.582410 | tig0019464:-74761 | None:intergenic |
| TATTTCAGCACCAAGAGCCA+TGG | 0.584136 | tig0019464:+77129 | Msa1373890:intron |
| TAAGGCAACTGTGAATCTCA+AGG | 0.584506 | tig0019464:+75252 | Msa1373890:intron |
| ACGAATTAATGGACATAGCA+GGG | 0.591977 | tig0019464:+77279 | Msa1373890:three_prime_UTR |
| ATAGGGCTCAAGTGGTGGGT+TGG | 0.593236 | tig0019464:+74542 | Msa1373890:intron |
| GGTATGAAGAAGGAGAATAT+GGG | 0.605300 | tig0019464:+72555 | Msa1373890:CDS |
| ATGAAGACAAGGATGGTGAC+TGG | 0.608145 | tig0019464:+75343 | Msa1373890:CDS |
| GGATCAGCCACAGCTACTGA+AGG | 0.608178 | tig0019464:+72627 | Msa1373890:CDS |
| CATAGAAAGACTTACTCCCA+TGG | 0.609888 | tig0019464:-75384 | None:intergenic |
| AAATAATAATAGTGGTGGAA+GGG | 0.611024 | tig0019464:-72436 | None:intergenic |
| TTCCGGTACGACCGGACAGG+TGG | 0.611684 | tig0019464:-74565 | None:intergenic |
| ATGTATGTATAGGGCTCAAG+TGG | 0.612031 | tig0019464:+74534 | Msa1373890:intron |
| TAGTGTAGTATAGGGGCAAG+GGG | 0.612310 | tig0019464:-72407 | None:intergenic |
| ATAGAAAGACTTACTCCCAT+GGG | 0.617476 | tig0019464:-75383 | None:intergenic |
| GAAACTATAGTGTAGTATAG+GGG | 0.629672 | tig0019464:-72414 | None:intergenic |
| ATGACAAAAGATGGAGCAGG+TGG | 0.638402 | tig0019464:-77197 | None:intergenic |
| AATATGACAAAAGATGGAGC+AGG | 0.645066 | tig0019464:-77200 | None:intergenic |
| ATGTATAGGGCTCAAGTGGT+GGG | 0.646443 | tig0019464:+74538 | Msa1373890:intron |
| CTCTAAGGAAGCTACTGCTG+AGG | 0.652011 | tig0019464:+72728 | Msa1373890:CDS |
| ATTTCAAGTCTACTTTGCGG+AGG | 0.653195 | tig0019464:-74687 | None:intergenic |
| TGTCCCAACCTATGAAGACA+AGG | 0.658762 | tig0019464:+75332 | Msa1373890:CDS |
| CCAACCTATGAAGACAAGGA+TGG | 0.661428 | tig0019464:+75336 | Msa1373890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTTCTTAAATAAAAAAAA+TGG | - | tig0019464:73185-73204 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATTTAAGAAAGA+TGG | + | tig0019464:73185-73204 | Msa1373890:intron | 10.0% |
| !!! | TTCTTTTAATATAAAAATAC+TGG | + | tig0019464:73711-73730 | Msa1373890:intron | 10.0% |
| !!! | AACTTATATTTATAGATTTT+TGG | + | tig0019464:73998-74017 | Msa1373890:intron | 10.0% |
| !!! | ACTTATATTTATAGATTTTT+GGG | + | tig0019464:73999-74018 | Msa1373890:intron | 10.0% |
| !! | TAAAAAATAAAGATTATAAC+AGG | - | tig0019464:74181-74200 | None:intergenic | 10.0% |
| !!! | TGTTATAATCTTTATTTTTT+AGG | + | tig0019464:74180-74199 | Msa1373890:intron | 10.0% |
| !! | CTTATTTAAAAAAAAATGTT+TGG | - | tig0019464:74230-74249 | None:intergenic | 10.0% |
| !! | AATTTACCAAATTTATTATT+AGG | - | tig0019464:74295-74314 | None:intergenic | 10.0% |
| !! | AGTAATGTTATATATATATA+TGG | + | tig0019464:74339-74358 | Msa1373890:intron | 10.0% |
| !! | TGTAAATATAATTGATTATA+AGG | + | tig0019464:74417-74436 | Msa1373890:intron | 10.0% |
| !!! | CATTTTATTTTATTTTCTAA+TGG | + | tig0019464:75427-75446 | Msa1373890:intron | 10.0% |
| !! | TATAAAATTAATATATTTGC+GGG | + | tig0019464:75646-75665 | Msa1373890:intron | 10.0% |
| !! | CAAAAAATTAAAAATATAGT+GGG | - | tig0019464:75759-75778 | None:intergenic | 10.0% |
| !! | ACAAAAAATTAAAAATATAG+TGG | - | tig0019464:75760-75779 | None:intergenic | 10.0% |
| !! | TAATTATATTAATCATTAAC+GGG | + | tig0019464:75867-75886 | Msa1373890:intron | 10.0% |
| !! | TAAAGTTATAGAAAATTTAA+AGG | - | tig0019464:76161-76180 | None:intergenic | 10.0% |
| !!! | GAATTATTATATTTTCAATT+TGG | + | tig0019464:76250-76269 | Msa1373890:intron | 10.0% |
| !! | TAAAATAAAAGTTATATGTT+TGG | + | tig0019464:76472-76491 | Msa1373890:intron | 10.0% |
| !! | ATATTATCATAAATAATGTA+AGG | - | tig0019464:76541-76560 | None:intergenic | 10.0% |
| !!! | TTTTTTACTAAATTATTACA+AGG | + | tig0019464:76763-76782 | Msa1373890:intron | 10.0% |
| !!! | TTTTTACTAAATTATTACAA+GGG | + | tig0019464:76764-76783 | Msa1373890:intron | 10.0% |
| !! | TTGTTTAATAATTAATACTA+AGG | + | tig0019464:77523-77542 | Msa1373890:three_prime_UTR | 10.0% |
| !!! | TAATCAAATTTTTTTTTTGG+AGG | + | tig0019464:72845-72864 | Msa1373890:intron | 15.0% |
| !! | TAAAAAATTCCAAGATATAT+AGG | + | tig0019464:72997-73016 | Msa1373890:intron | 15.0% |
| !! | ATCATATTCAAATTCAAATT+TGG | + | tig0019464:73124-73143 | Msa1373890:intron | 15.0% |
| !! | TTCTTAAATAAAAAAAATGG+TGG | - | tig0019464:73182-73201 | None:intergenic | 15.0% |
| !!! | AATTATATTCTTCTGAAATA+TGG | + | tig0019464:73406-73425 | Msa1373890:intron | 15.0% |
| !! | TAAGAATAAATAAATAGATC+CGG | + | tig0019464:73862-73881 | Msa1373890:intron | 15.0% |
| !!! | TTTTTTATAATTTTTCTGAC+CGG | - | tig0019464:73884-73903 | None:intergenic | 15.0% |
| !! | TAGAAAAAAAATCAAAGAAA+AGG | + | tig0019464:74107-74126 | Msa1373890:intron | 15.0% |
| !! | AGAAAAAAAATCAAAGAAAA+GGG | + | tig0019464:74108-74127 | Msa1373890:intron | 15.0% |
| !! | ATTTACATTTGTATATTTCA+AGG | + | tig0019464:74260-74279 | Msa1373890:intron | 15.0% |
| !! | GTTATTCCTAATAATAAATT+TGG | + | tig0019464:74286-74305 | Msa1373890:intron | 15.0% |
| !!! | AAAACAAACACATTTTATTT+TGG | + | tig0019464:74316-74335 | Msa1373890:intron | 15.0% |
| !!! | TTCAATATATAATTTGTTTG+GGG | - | tig0019464:74372-74391 | None:intergenic | 15.0% |
| !!! | CTTCAATATATAATTTGTTT+GGG | - | tig0019464:74373-74392 | None:intergenic | 15.0% |
| !!! | ACTTCAATATATAATTTGTT+TGG | - | tig0019464:74374-74393 | None:intergenic | 15.0% |
| !!! | ATATGTAGTCTTAAAATAAA+TGG | + | tig0019464:74500-74519 | Msa1373890:intron | 15.0% |
| !!! | TATCTTATTTGATTCTTTAA+AGG | + | tig0019464:75601-75620 | Msa1373890:intron | 15.0% |
| !!! | ATCTTATTTGATTCTTTAAA+GGG | + | tig0019464:75602-75621 | Msa1373890:intron | 15.0% |
| !!! | ATTATATAATGAGCTTTTTT+AGG | + | tig0019464:75842-75861 | Msa1373890:intron | 15.0% |
| !!! | TTATCATTTTTTTGATGTAT+TGG | - | tig0019464:76565-76584 | None:intergenic | 15.0% |
| !! | TATAAAAGTTACAATGAAAA+AGG | - | tig0019464:76596-76615 | None:intergenic | 15.0% |
| !!! | TTTTATATGATTAGTCAAAT+CGG | + | tig0019464:76609-76628 | Msa1373890:intron | 15.0% |
| !!! | TTTAAAACAGCAAAATATAT+AGG | - | tig0019464:76711-76730 | None:intergenic | 15.0% |
| !!! | TTTTATTGAAGAAGATTATA+AGG | + | tig0019464:76797-76816 | Msa1373890:intron | 15.0% |
| !! | TTTATTGAAGAAGATTATAA+GGG | + | tig0019464:76798-76817 | Msa1373890:intron | 15.0% |
| !! | TTTAATTACAAATGAAATGA+GGG | - | tig0019464:77009-77028 | None:intergenic | 15.0% |
| !!! | TTTTTGATAAAATTGTTCTA+TGG | + | tig0019464:77344-77363 | Msa1373890:three_prime_UTR | 15.0% |
| !! | TTAAAAATTACTTACTTTGC+AGG | - | tig0019464:72828-72847 | None:intergenic | 20.0% |
| !! | ATTAAATAGAAACTTTCCTA+TGG | - | tig0019464:73590-73609 | None:intergenic | 20.0% |
| !! | TAACAGATAACGTAAAATAT+TGG | + | tig0019464:73680-73699 | Msa1373890:intron | 20.0% |
| !!! | AGTTTACTAAATTTTATTCC+TGG | + | tig0019464:74059-74078 | Msa1373890:intron | 20.0% |
| !! | ATACTCCAAAAAATGTTATT+GGG | + | tig0019464:74082-74101 | Msa1373890:intron | 20.0% |
| !!! | TCTTTATTTTTTAGGTTCTT+CGG | + | tig0019464:74188-74207 | Msa1373890:intron | 20.0% |
| !!! | ATTTTAAGACTACATATTCA+TGG | - | tig0019464:74497-74516 | None:intergenic | 20.0% |
| !! | ATTAATGTGTATGTATGTAT+AGG | + | tig0019464:74524-74543 | Msa1373890:intron | 20.0% |
| !! | TTAATGTGTATGTATGTATA+GGG | + | tig0019464:74525-74544 | Msa1373890:intron | 20.0% |
| !! | AAATGTAATTGCATTGAAAT+TGG | - | tig0019464:74638-74657 | None:intergenic | 20.0% |
| !!! | TTATTTTCAATCTCATTTGT+CGG | - | tig0019464:74846-74865 | None:intergenic | 20.0% |
| !!! | AACTGTTTAGAACAATTTTA+CGG | + | tig0019464:75051-75070 | Msa1373890:intron | 20.0% |
| !!! | TAGTATATATTTTGTTTGAG+TGG | - | tig0019464:75146-75165 | None:intergenic | 20.0% |
| !!! | ATTACATTAAAAACCCTTTT+GGG | - | tig0019464:75183-75202 | None:intergenic | 20.0% |
| !! | ATTAATTCTGTGTTTATGTA+AGG | + | tig0019464:75234-75253 | Msa1373890:intron | 20.0% |
| !! | AAAAATCTAATTAAGGATGT+GGG | - | tig0019464:75946-75965 | None:intergenic | 20.0% |
| !! | AGGATTCAAAAATCTAATTA+AGG | - | tig0019464:75953-75972 | None:intergenic | 20.0% |
| !! | AGAAAATTTAAAGGATATTG+AGG | - | tig0019464:76152-76171 | None:intergenic | 20.0% |
| !! | GAAGTCAAAAATTAAACTTA+AGG | - | tig0019464:76279-76298 | None:intergenic | 20.0% |
| !! | TGCACATTAATTAATGTAAT+TGG | + | tig0019464:76642-76661 | Msa1373890:intron | 20.0% |
| !! | GTTTAATTACAAATGAAATG+AGG | - | tig0019464:77010-77029 | None:intergenic | 20.0% |
| !!! | TTGATTTGTGTAATGTTTTA+TGG | + | tig0019464:77314-77333 | Msa1373890:three_prime_UTR | 20.0% |
| !! | AAATAATAATAGTGGTGGAA+GGG | - | tig0019464:72439-72458 | None:intergenic | 25.0% |
| ! | CTATGTGGAAATAATAATAG+TGG | - | tig0019464:72447-72466 | None:intergenic | 25.0% |
| ! | ATTGGATTTCTTGGAAATAA+TGG | + | tig0019464:72606-72625 | Msa1373890:CDS | 25.0% |
| ! | AAAATTCCAAGATATATAGG+AGG | + | tig0019464:73000-73019 | Msa1373890:intron | 25.0% |
| !!! | ACATCTTGATTTTTTTTCTC+TGG | - | tig0019464:73029-73048 | None:intergenic | 25.0% |
| ! | GAACTAGTTATATGCAAATT+AGG | + | tig0019464:73062-73081 | Msa1373890:intron | 25.0% |
| ! | TACATTGTGCAACATAAAAA+TGG | + | tig0019464:73442-73461 | Msa1373890:intron | 25.0% |
| ! | ACAAACTTGAAACAATTCAA+TGG | - | tig0019464:73536-73555 | None:intergenic | 25.0% |
| !!! | ATTGAATTGTTTCAAGTTTG+TGG | + | tig0019464:73535-73554 | Msa1373890:intron | 25.0% |
| !!! | AAAGCAGACATGTATTTTTT+TGG | - | tig0019464:73952-73971 | None:intergenic | 25.0% |
| ! | GATACTCCAAAAAATGTTAT+TGG | + | tig0019464:74081-74100 | Msa1373890:intron | 25.0% |
| !!! | CTATTCCCAATAACATTTTT+TGG | - | tig0019464:74090-74109 | None:intergenic | 25.0% |
| ! | AAAAAAATCAAAGAAAAGGG+TGG | + | tig0019464:74111-74130 | Msa1373890:intron | 25.0% |
| ! | AAAAAATCAAAGAAAAGGGT+GGG | + | tig0019464:74112-74131 | Msa1373890:intron | 25.0% |
| ! | TACATTTGTGAAAGTTAGTA+TGG | + | tig0019464:74651-74670 | Msa1373890:CDS | 25.0% |
| ! | ATGAATTTATTACGTACCAA+TGG | - | tig0019464:74770-74789 | None:intergenic | 25.0% |
| !!! | ACTGTTTAGAACAATTTTAC+GGG | + | tig0019464:75052-75071 | Msa1373890:intron | 25.0% |
| !! | CATTACATTAAAAACCCTTT+TGG | - | tig0019464:75184-75203 | None:intergenic | 25.0% |
| !! | TATTTTCTAATGGAAGTCAA+CGG | + | tig0019464:75437-75456 | Msa1373890:intron | 25.0% |
| ! | ATTAATATATTTGCGGGAAT+TGG | + | tig0019464:75652-75671 | Msa1373890:intron | 25.0% |
| ! | TATTTACTTGTAAGCAAAGA+TGG | + | tig0019464:75704-75723 | Msa1373890:intron | 25.0% |
| ! | CAAAAATCTAATTAAGGATG+TGG | - | tig0019464:75947-75966 | None:intergenic | 25.0% |
| !!! | TTTTGCTATAAGTCATTCTA+TGG | + | tig0019464:76122-76141 | Msa1373890:intron | 25.0% |
| ! | GAAAAAGTTAGCACAATATA+AGG | - | tig0019464:76433-76452 | None:intergenic | 25.0% |
| !! | ATATGTTTGGTGAAATCTTT+CGG | + | tig0019464:76485-76504 | Msa1373890:intron | 25.0% |
| ! | TTTAACTAGTTATAAAGCAC+AGG | + | tig0019464:76827-76846 | Msa1373890:intron | 25.0% |
| ! | TGAAATTTACTTCTTGCAAA+TGG | - | tig0019464:76978-76997 | None:intergenic | 25.0% |
| ! | TAAACACTTGACTAAATAGA+AGG | - | tig0019464:77032-77051 | None:intergenic | 25.0% |
| ! | TACCAAAATATGACAAAAGA+TGG | - | tig0019464:77209-77228 | None:intergenic | 25.0% |
| ! | CAAACACACTAATAAGAAAT+AGG | - | tig0019464:77502-77521 | None:intergenic | 25.0% |
| GAAACTATAGTGTAGTATAG+GGG | - | tig0019464:72417-72436 | None:intergenic | 30.0% | |
| GGAAACTATAGTGTAGTATA+GGG | - | tig0019464:72418-72437 | None:intergenic | 30.0% | |
| ! | GAAATAATAATAGTGGTGGA+AGG | - | tig0019464:72440-72459 | None:intergenic | 30.0% |
| TGTGGAAATAATAATAGTGG+TGG | - | tig0019464:72444-72463 | None:intergenic | 30.0% | |
| !! | TGAATGATTTGTTTGCTATG+TGG | - | tig0019464:72462-72481 | None:intergenic | 30.0% |
| ! | TGATGATGAAACAACTACTA+TGG | + | tig0019464:72686-72705 | Msa1373890:CDS | 30.0% |
| AAAATTACTTACTTTGCAGG+AGG | - | tig0019464:72825-72844 | None:intergenic | 30.0% | |
| ! | AGTTTGTGTTGTTAACTATG+TGG | - | tig0019464:73091-73110 | None:intergenic | 30.0% |
| ATAGCACATGTACAAATTCA+TGG | + | tig0019464:73261-73280 | Msa1373890:intron | 30.0% | |
| !!! | TAACATTTTTTGGAGTATCC+AGG | - | tig0019464:74080-74099 | None:intergenic | 30.0% |
| GAATTTATTCTCATCTCCAT+GGG | - | tig0019464:74147-74166 | None:intergenic | 30.0% | |
| TGAATTTATTCTCATCTCCA+TGG | - | tig0019464:74148-74167 | None:intergenic | 30.0% | |
| TTTGTGAAAGTTAGTATGGA+TGG | + | tig0019464:74655-74674 | Msa1373890:CDS | 30.0% | |
| ! | ACAATTTCAAGTCTACTTTG+CGG | - | tig0019464:74693-74712 | None:intergenic | 30.0% |
| CAAAAACAAAGGTAAAACTG+AGG | - | tig0019464:74803-74822 | None:intergenic | 30.0% | |
| ! | CTAGTTCTCTACAAAAACAA+AGG | - | tig0019464:74814-74833 | None:intergenic | 30.0% |
| GACAACCAAAATATTGGTAA+GGG | + | tig0019464:75074-75093 | Msa1373890:intron | 30.0% | |
| ! | TTCTTCCCTTACCAATATTT+TGG | - | tig0019464:75082-75101 | None:intergenic | 30.0% |
| TTTCAAACGAATTTGCATTG+AGG | - | tig0019464:75973-75992 | None:intergenic | 30.0% | |
| !!! | ACTACGTACTATTTTGATTG+CGG | + | tig0019464:76007-76026 | Msa1373890:intron | 30.0% |
| !!! | CGGTTTTAAAAAATTTCGAG+AGG | + | tig0019464:76319-76338 | Msa1373890:intron | 30.0% |
| TTACTACACCACATATACAA+GGG | - | tig0019464:76357-76376 | None:intergenic | 30.0% | |
| TTTACTACACCACATATACA+AGG | - | tig0019464:76358-76377 | None:intergenic | 30.0% | |
| GGTGTAGTAAATGATATATC+TGG | + | tig0019464:76367-76386 | Msa1373890:intron | 30.0% | |
| ! | CTCCATCTTTTGTCATATTT+TGG | + | tig0019464:77204-77223 | Msa1373890:CDS | 30.0% |
| CCAAGTCTAACAACATAATT+TGG | - | tig0019464:77454-77473 | None:intergenic | 30.0% | |
| CCAAATTATGTTGTTAGACT+TGG | + | tig0019464:77451-77470 | Msa1373890:three_prime_UTR | 30.0% | |
| GGGAAACTATAGTGTAGTAT+AGG | - | tig0019464:72419-72438 | None:intergenic | 35.0% | |
| AGAGAGTGAAAAACTCATCA+TGG | + | tig0019464:72524-72543 | Msa1373890:exon | 35.0% | |
| AAACTCATCATGGAAGTTGT+TGG | + | tig0019464:72534-72553 | Msa1373890:exon | 35.0% | |
| TGGTATGAAGAAGGAGAATA+TGG | + | tig0019464:72554-72573 | Msa1373890:CDS | 35.0% | |
| GGTATGAAGAAGGAGAATAT+GGG | + | tig0019464:72555-72574 | Msa1373890:CDS | 35.0% | |
| AGACTAGGAATTGGATTTCT+TGG | + | tig0019464:72597-72616 | Msa1373890:CDS | 35.0% | |
| GATGCTTAATCTTTCCTCTA+AGG | + | tig0019464:72713-72732 | Msa1373890:CDS | 35.0% | |
| ! | CTTCTCTTTTTGCAAAGTCT+TGG | - | tig0019464:72775-72794 | None:intergenic | 35.0% |
| TCATTTACGAACCACTTATG+TGG | + | tig0019464:72914-72933 | Msa1373890:intron | 35.0% | |
| TGGTTTCCTCCTATATATCT+TGG | - | tig0019464:73009-73028 | None:intergenic | 35.0% | |
| GAGACATATAGATCAGAAGA+TGG | + | tig0019464:73320-73339 | Msa1373890:intron | 35.0% | |
| ATATCATGCTATGACTGATG+AGG | - | tig0019464:73615-73634 | None:intergenic | 35.0% | |
| ATACACATGTGCATAGCATA+TGG | - | tig0019464:74456-74475 | None:intergenic | 35.0% | |
| TTATTACGTACCAATGGTGA+AGG | - | tig0019464:74764-74783 | None:intergenic | 35.0% | |
| TTACGGGACAACCAAAATAT+TGG | + | tig0019464:75068-75087 | Msa1373890:intron | 35.0% | |
| GGACAACCAAAATATTGGTA+AGG | + | tig0019464:75073-75092 | Msa1373890:intron | 35.0% | |
| TCAACATTAGTTGTCCCAAA+AGG | + | tig0019464:75166-75185 | Msa1373890:intron | 35.0% | |
| CAACATTAGTTGTCCCAAAA+GGG | + | tig0019464:75167-75186 | Msa1373890:intron | 35.0% | |
| ! | CATGAATGAGAGTAAGTTGA+TGG | + | tig0019464:75287-75306 | Msa1373890:CDS | 35.0% |
| ATAGAAAGACTTACTCCCAT+GGG | - | tig0019464:75386-75405 | None:intergenic | 35.0% | |
| !! | GAATCTTTGGTAGTGTATGA+GGG | - | tig0019464:76034-76053 | None:intergenic | 35.0% |
| !! | TGAATCTTTGGTAGTGTATG+AGG | - | tig0019464:76035-76054 | None:intergenic | 35.0% |
| ATCACAAATGCAGATGTAGA+AGG | - | tig0019464:76088-76107 | None:intergenic | 35.0% | |
| TAGACAAACCCTTGTATATG+TGG | + | tig0019464:76346-76365 | Msa1373890:intron | 35.0% | |
| AAACGTTTGCGTATCATGAA+AGG | + | tig0019464:76905-76924 | Msa1373890:intron | 35.0% | |
| TTTGCGTATCATGAAAGGAA+AGG | + | tig0019464:76910-76929 | Msa1373890:intron | 35.0% | |
| AATATGACAAAAGATGGAGC+AGG | - | tig0019464:77203-77222 | None:intergenic | 35.0% | |
| TTAGTAACTATAAGCCAAGC+AGG | - | tig0019464:77232-77251 | None:intergenic | 35.0% | |
| ! | ACGAATTAATGGACATAGCA+GGG | + | tig0019464:77279-77298 | Msa1373890:three_prime_UTR | 35.0% |
| ATAGTGTAGTATAGGGGCAA+GGG | - | tig0019464:72411-72430 | None:intergenic | 40.0% | |
| TATAGTGTAGTATAGGGGCA+AGG | - | tig0019464:72412-72431 | None:intergenic | 40.0% | |
| GGAAGTTGTTGGTATGAAGA+AGG | + | tig0019464:72545-72564 | Msa1373890:CDS | 40.0% | |
| GAAGGAGAATATGGGATTTG+AGG | + | tig0019464:72563-72582 | Msa1373890:CDS | 40.0% | |
| !!! | GTCTTGGTGGTTTTATCACT+TGG | - | tig0019464:72759-72778 | None:intergenic | 40.0% |
| ! | CTCTTTTTGCAAAGTCTTGG+TGG | - | tig0019464:72772-72791 | None:intergenic | 40.0% |
| AAGTCACTCTACCACATAAG+TGG | - | tig0019464:72928-72947 | None:intergenic | 40.0% | |
| ACTATGATGCAGTACACCAT+AGG | + | tig0019464:73571-73590 | Msa1373890:intron | 40.0% | |
| !! | GTCTGCTTTTGTAAGAGCTT+AGG | + | tig0019464:73963-73982 | Msa1373890:intron | 40.0% |
| ATGTATGTATAGGGCTCAAG+TGG | + | tig0019464:74534-74553 | Msa1373890:intron | 40.0% | |
| GCATTGCTAACATGTTCTTC+CGG | - | tig0019464:74585-74604 | None:intergenic | 40.0% | |
| ! | ATTTCAAGTCTACTTTGCGG+AGG | - | tig0019464:74690-74709 | None:intergenic | 40.0% |
| AGGGAAGAATAAAGATCTCG+AGG | + | tig0019464:75093-75112 | Msa1373890:intron | 40.0% | |
| TAAGGCAACTGTGAATCTCA+AGG | + | tig0019464:75252-75271 | Msa1373890:intron | 40.0% | |
| CTGTGAATCTCAAGGAATGA+AGG | + | tig0019464:75260-75279 | Msa1373890:CDS | 40.0% | |
| CATCCTTGTCTTCATAGGTT+GGG | - | tig0019464:75338-75357 | None:intergenic | 40.0% | |
| CATAGAAAGACTTACTCCCA+TGG | - | tig0019464:75387-75406 | None:intergenic | 40.0% | |
| TAAGCAAAGATGGAGCTAGA+AGG | + | tig0019464:75714-75733 | Msa1373890:intron | 40.0% | |
| AAGCAAAGATGGAGCTAGAA+GGG | + | tig0019464:75715-75734 | Msa1373890:intron | 40.0% | |
| AATCGTGAGCAGTGAATCTT+TGG | - | tig0019464:76047-76066 | None:intergenic | 40.0% | |
| TTCACTGCTCACGATTTCAT+CGG | + | tig0019464:76051-76070 | Msa1373890:intron | 40.0% | |
| ! | AAGGTGTCATAACATGCACA+TGG | - | tig0019464:76414-76433 | None:intergenic | 40.0% |
| ! | GGTGTCATAACTTATGCACA+TGG | - | tig0019464:76520-76539 | None:intergenic | 40.0% |
| !! | CTCTGGTTAGGTCTTGTTAT+CGG | + | tig0019464:76673-76692 | Msa1373890:intron | 40.0% |
| GCATGATTCAACAAACATCC+TGG | - | tig0019464:76885-76904 | None:intergenic | 40.0% | |
| ATGAAAGGAAAGGAGGCTAT+TGG | + | tig0019464:76920-76939 | Msa1373890:intron | 40.0% | |
| ! | TTGCATTTTTCCATGGCTCT+TGG | - | tig0019464:77142-77161 | None:intergenic | 40.0% |
| ! | CCTGTTCTTGCATTTTTCCA+TGG | - | tig0019464:77149-77168 | None:intergenic | 40.0% |
| CCATGGAAAAATGCAAGAAC+AGG | + | tig0019464:77146-77165 | Msa1373890:CDS | 40.0% | |
| !!! | GTCATATTTTGGTACCTGCT+TGG | + | tig0019464:77215-77234 | Msa1373890:CDS | 40.0% |
| ATGCAGAAGCCACGAATTAA+TGG | + | tig0019464:77268-77287 | Msa1373890:three_prime_UTR | 40.0% | |
| CTGCTATGTCCATTAATTCG+TGG | - | tig0019464:77280-77299 | None:intergenic | 40.0% | |
| ! | CACGAATTAATGGACATAGC+AGG | + | tig0019464:77278-77297 | Msa1373890:three_prime_UTR | 40.0% |
| TAGTGTAGTATAGGGGCAAG+GGG | - | tig0019464:72410-72429 | None:intergenic | 45.0% | |
| ACTGAGCTGAGACTAGGAAT+TGG | + | tig0019464:72588-72607 | Msa1373890:CDS | 45.0% | |
| TACTTACTTTGCAGGAGGCT+TGG | - | tig0019464:72820-72839 | None:intergenic | 45.0% | |
| ATTTGTCCCACATGCCTAGT+CGG | + | tig0019464:73489-73508 | Msa1373890:intron | 45.0% | |
| CTATAACCGACTAGGCATGT+GGG | - | tig0019464:73498-73517 | None:intergenic | 45.0% | |
| TCTATAACCGACTAGGCATG+TGG | - | tig0019464:73499-73518 | None:intergenic | 45.0% | |
| ACATGCCTAGTCGGTTATAG+AGG | + | tig0019464:73498-73517 | Msa1373890:intron | 45.0% | |
| TATGTATAGGGCTCAAGTGG+TGG | + | tig0019464:74537-74556 | Msa1373890:intron | 45.0% | |
| ATGTATAGGGCTCAAGTGGT+GGG | + | tig0019464:74538-74557 | Msa1373890:intron | 45.0% | |
| AAGTCTACTTTGCGGAGGTA+AGG | - | tig0019464:74685-74704 | None:intergenic | 45.0% | |
| ! | GGAGCTGAACATTTTGCCTA+AGG | - | tig0019464:74743-74762 | None:intergenic | 45.0% |
| ATGTTCAGCTCCTTCACCAT+TGG | + | tig0019464:74751-74770 | Msa1373890:CDS | 45.0% | |
| TGTCCCAACCTATGAAGACA+AGG | + | tig0019464:75332-75351 | Msa1373890:CDS | 45.0% | |
| CCATCCTTGTCTTCATAGGT+TGG | - | tig0019464:75339-75358 | None:intergenic | 45.0% | |
| CCAACCTATGAAGACAAGGA+TGG | + | tig0019464:75336-75355 | Msa1373890:CDS | 45.0% | |
| GTCACCATCCTTGTCTTCAT+AGG | - | tig0019464:75343-75362 | None:intergenic | 45.0% | |
| ATGAAGACAAGGATGGTGAC+TGG | + | tig0019464:75343-75362 | Msa1373890:CDS | 45.0% | |
| AACAAGACCTAACCAGAGCA+GGG | - | tig0019464:76671-76690 | None:intergenic | 45.0% | |
| TAACAAGACCTAACCAGAGC+AGG | - | tig0019464:76672-76691 | None:intergenic | 45.0% | |
| !! | GTTAGGTCTTGTTATCGGAG+TGG | + | tig0019464:76678-76697 | Msa1373890:intron | 45.0% |
| ACAGGCTTAGCACTCTAACA+TGG | + | tig0019464:76845-76864 | Msa1373890:intron | 45.0% | |
| ATGGACTCTTCATGTCAACC+AGG | + | tig0019464:76864-76883 | Msa1373890:intron | 45.0% | |
| GCGTATCATGAAAGGAAAGG+AGG | + | tig0019464:76913-76932 | Msa1373890:intron | 45.0% | |
| GGAAAGGAGGCTATTGGTAT+AGG | + | tig0019464:76926-76945 | Msa1373890:intron | 45.0% | |
| TATTTCAGCACCAAGAGCCA+TGG | + | tig0019464:77129-77148 | Msa1373890:intron | 45.0% | |
| ATGACAAAAGATGGAGCAGG+TGG | - | tig0019464:77200-77219 | None:intergenic | 45.0% | |
| !!! | TTTTAATCAAATTTTTTTTT+TGG | + | tig0019464:72842-72861 | Msa1373890:intron | 5.0% |
| !! | AATTATATTTACAATAATTA+TGG | - | tig0019464:74410-74429 | None:intergenic | 5.0% |
| !! | TTATAAAATTAATATATTTG+CGG | + | tig0019464:75645-75664 | Msa1373890:intron | 5.0% |
| !! | TTAATTATATTAATCATTAA+CGG | + | tig0019464:75866-75885 | Msa1373890:intron | 5.0% |
| ! | ATAGGGGCAAGGGGAGTTTT+TGG | - | tig0019464:72401-72420 | None:intergenic | 50.0% |
| GAGGAAACTGAGCTGAGACT+AGG | + | tig0019464:72582-72601 | Msa1373890:CDS | 50.0% | |
| TACAGCTCCTTCAGTAGCTG+TGG | - | tig0019464:72637-72656 | None:intergenic | 50.0% | |
| CAGCTACTGAAGGAGCTGTA+AGG | + | tig0019464:72637-72656 | Msa1373890:CDS | 50.0% | |
| GAAGGAGCTGTAAGGAAGAG+AGG | + | tig0019464:72645-72664 | Msa1373890:CDS | 50.0% | |
| CTCAGCAGTAGCTTCCTTAG+AGG | - | tig0019464:72730-72749 | None:intergenic | 50.0% | |
| ! | CTCTAAGGAAGCTACTGCTG+AGG | + | tig0019464:72728-72747 | Msa1373890:CDS | 50.0% |
| TCTCGCCTCTATAACCGACT+AGG | - | tig0019464:73506-73525 | None:intergenic | 50.0% | |
| GGGTGGGAATAAAGTTCCCA+TGG | + | tig0019464:74128-74147 | Msa1373890:intron | 50.0% | |
| ACATGTTCTTCCGGTACGAC+CGG | - | tig0019464:74576-74595 | None:intergenic | 50.0% | |
| TCGCAGCTTTCTGATGCCTT+AGG | + | tig0019464:74724-74743 | Msa1373890:CDS | 50.0% | |
| ! | ATCTCGAGGAGCATACTCTC+AGG | + | tig0019464:75107-75126 | Msa1373890:intron | 50.0% |
| GATGGTGACTGGATGCTTGT+CGG | + | tig0019464:75354-75373 | Msa1373890:CDS | 50.0% | |
| TGACTTCGTCCCGTCTTGTA+AGG | + | tig0019464:76292-76311 | Msa1373890:intron | 50.0% | |
| GACTTCGTCCCGTCTTGTAA+GGG | + | tig0019464:76293-76312 | Msa1373890:intron | 50.0% | |
| ACTTCGTCCCGTCTTGTAAG+GGG | + | tig0019464:76294-76313 | Msa1373890:intron | 50.0% | |
| TGTAATTGGATCCCCTGCTC+TGG | + | tig0019464:76656-76675 | Msa1373890:intron | 50.0% | |
| ACAAGACCTAACCAGAGCAG+GGG | - | tig0019464:76670-76689 | None:intergenic | 50.0% | |
| !! | AGGTCTTGTTATCGGAGTGG+TGG | + | tig0019464:76681-76700 | Msa1373890:intron | 50.0% |
| GGATCAGCCACAGCTACTGA+AGG | + | tig0019464:72627-72646 | Msa1373890:CDS | 55.0% | |
| GGCAGGATCTGCAGGCAAAA+GGG | - | tig0019464:72799-72818 | None:intergenic | 55.0% | |
| TGGCAGGATCTGCAGGCAAA+AGG | - | tig0019464:72800-72819 | None:intergenic | 55.0% | |
| TACTTTGCAGGAGGCTTGGC+AGG | - | tig0019464:72816-72835 | None:intergenic | 55.0% | |
| !! | ATAGGGCTCAAGTGGTGGGT+TGG | + | tig0019464:74542-74561 | Msa1373890:intron | 55.0% |
| AAACCGCGCCCCTTACAAGA+CGG | - | tig0019464:76305-76324 | None:intergenic | 55.0% | |
| TTGGATCCCCTGCTCTGGTT+AGG | + | tig0019464:76661-76680 | Msa1373890:intron | 55.0% | |
| TTCTTCCGGTACGACCGGAC+AGG | - | tig0019464:74571-74590 | None:intergenic | 60.0% | |
| TGCTTGTCGGTGACGTCCCA+TGG | + | tig0019464:75367-75386 | Msa1373890:CDS | 60.0% | |
| GCTTGTCGGTGACGTCCCAT+GGG | + | tig0019464:75368-75387 | Msa1373890:CDS | 60.0% | |
| GAGCTAGAAGGGACCAGCAG+AGG | + | tig0019464:75726-75745 | Msa1373890:intron | 60.0% | |
| GAAGGGACCAGCAGAGGTCA+TGG | + | tig0019464:75732-75751 | Msa1373890:intron | 60.0% | |
| AGTGGGACCATGACCTCTGC+TGG | - | tig0019464:75742-75761 | None:intergenic | 60.0% | |
| AACCGCGCCCCTTACAAGAC+GGG | - | tig0019464:76304-76323 | None:intergenic | 60.0% | |
| GGAGGCTTGGCAGGATCTGC+AGG | - | tig0019464:72807-72826 | None:intergenic | 65.0% | |
| !! | TGGTGGGTTGGCCACCTGTC+CGG | + | tig0019464:74554-74573 | Msa1373890:CDS | 65.0% |
| TTCCGGTACGACCGGACAGG+TGG | - | tig0019464:74568-74587 | None:intergenic | 65.0% | |
| GTCCCGTCTTGTAAGGGGCG+CGG | + | tig0019464:76299-76318 | Msa1373890:intron | 65.0% | |
| GGCCACCTGTCCGGTCGTAC+CGG | + | tig0019464:74563-74582 | Msa1373890:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019464 | gene | 72398 | 77579 | 72398 | ID=Msa1373890;Name=Msa1373890 |
| tig0019464 | mRNA | 72398 | 77579 | 72398 | ID=Msa1373890-mRNA-1;Parent=Msa1373890;Name=Msa1373890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=145|0.66|1|1|0.66|1|4|328|255 |
| tig0019464 | exon | 72398 | 72832 | 72398 | ID=Msa1373890-mRNA-1:exon:3529;Parent=Msa1373890-mRNA-1 |
| tig0019464 | exon | 74546 | 74772 | 74546 | ID=Msa1373890-mRNA-1:exon:3530;Parent=Msa1373890-mRNA-1 |
| tig0019464 | exon | 75256 | 75391 | 75256 | ID=Msa1373890-mRNA-1:exon:3531;Parent=Msa1373890-mRNA-1 |
| tig0019464 | exon | 77137 | 77579 | 77137 | ID=Msa1373890-mRNA-1:exon:3532;Parent=Msa1373890-mRNA-1 |
| tig0019464 | five_prime_UTR | 72398 | 72542 | 72398 | ID=Msa1373890-mRNA-1:five_prime_utr;Parent=Msa1373890-mRNA-1 |
| tig0019464 | CDS | 72543 | 72832 | 72543 | ID=Msa1373890-mRNA-1:cds;Parent=Msa1373890-mRNA-1 |
| tig0019464 | CDS | 74546 | 74772 | 74546 | ID=Msa1373890-mRNA-1:cds;Parent=Msa1373890-mRNA-1 |
| tig0019464 | CDS | 75256 | 75391 | 75256 | ID=Msa1373890-mRNA-1:cds;Parent=Msa1373890-mRNA-1 |
| tig0019464 | CDS | 77137 | 77251 | 77137 | ID=Msa1373890-mRNA-1:cds;Parent=Msa1373890-mRNA-1 |
| tig0019464 | three_prime_UTR | 77252 | 77579 | 77252 | ID=Msa1373890-mRNA-1:three_prime_utr;Parent=Msa1373890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
