Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133640 | XP_013449825.1 | 98.000 | 250 | 5 | 0 | 1 | 250 | 1 | 250 | 0.0 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133640 | sp|P13089|AUX28_SOYBN | 77.778 | 252 | 35 | 8 | 11 | 250 | 1 | 243 | 2.84e-128 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133640 | I3SRI4 | 98.000 | 250 | 5 | 0 | 1 | 250 | 1 | 250 | 0.0 | 507 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1133640 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033600 | Msa1133640 | 0.827454 | 1.550974e-54 | -8.615850e-47 |
| Msa0033650 | Msa1133640 | 0.816984 | 4.170943e-52 | -8.615850e-47 |
| Msa0075850 | Msa1133640 | 0.806627 | 7.504234e-50 | -8.615850e-47 |
| Msa0123940 | Msa1133640 | 0.830073 | 3.606704e-55 | -8.615850e-47 |
| Msa1036330 | Msa1133640 | 0.920356 | 1.419507e-87 | -8.615850e-47 |
| Msa1076610 | Msa1133640 | 0.824797 | 6.643733e-54 | -8.615850e-47 |
| Msa1133640 | Msa1373890 | 0.925972 | 8.880097e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133640 | MtrunA17_Chr7g0260641 | 98.000 | 250 | 5 | 0 | 1 | 250 | 1 | 250 | 0.0 | 507 |
| Msa1133640 | MtrunA17_Chr1g0184791 | 72.973 | 259 | 47 | 9 | 1 | 250 | 1 | 245 | 2.35e-122 | 348 |
| Msa1133640 | MtrunA17_Chr1g0187921 | 65.726 | 248 | 62 | 5 | 9 | 250 | 6 | 236 | 1.10e-102 | 298 |
| Msa1133640 | MtrunA17_Chr1g0190711 | 63.008 | 246 | 78 | 5 | 11 | 250 | 15 | 253 | 6.41e-97 | 284 |
| Msa1133640 | MtrunA17_Chr5g0411501 | 65.000 | 160 | 53 | 2 | 94 | 250 | 176 | 335 | 2.99e-70 | 219 |
| Msa1133640 | MtrunA17_Chr8g0366881 | 45.105 | 286 | 115 | 6 | 7 | 250 | 63 | 348 | 3.50e-70 | 219 |
| Msa1133640 | MtrunA17_Chr5g0428141 | 65.190 | 158 | 53 | 2 | 94 | 250 | 191 | 347 | 1.63e-69 | 217 |
| Msa1133640 | MtrunA17_Chr6g0486121 | 51.643 | 213 | 85 | 4 | 40 | 250 | 58 | 254 | 1.11e-68 | 212 |
| Msa1133640 | MtrunA17_Chr2g0331411 | 63.354 | 161 | 54 | 3 | 94 | 250 | 167 | 326 | 4.96e-68 | 213 |
| Msa1133640 | MtrunA17_Chr8g0390281 | 45.556 | 270 | 115 | 6 | 11 | 249 | 24 | 292 | 6.33e-68 | 211 |
| Msa1133640 | MtrunA17_Chr1g0187961 | 56.291 | 151 | 40 | 5 | 89 | 238 | 53 | 178 | 1.81e-51 | 166 |
| Msa1133640 | MtrunA17_Chr1g0184801 | 57.143 | 147 | 39 | 4 | 94 | 239 | 79 | 202 | 1.89e-49 | 161 |
| Msa1133640 | MtrunA17_Chr1g0166011 | 42.174 | 230 | 85 | 6 | 11 | 239 | 1 | 183 | 6.64e-49 | 159 |
| Msa1133640 | MtrunA17_Chr7g0260621 | 41.202 | 233 | 92 | 8 | 11 | 239 | 11 | 202 | 8.07e-47 | 154 |
| Msa1133640 | MtrunA17_Chr4g0004181 | 49.324 | 148 | 46 | 4 | 97 | 242 | 52 | 172 | 2.32e-36 | 127 |
| Msa1133640 | MtrunA17_Chr2g0332141 | 61.000 | 100 | 29 | 3 | 134 | 230 | 8 | 100 | 2.59e-35 | 122 |
| Msa1133640 | MtrunA17_Chr1g0183251 | 39.394 | 198 | 82 | 5 | 85 | 245 | 67 | 263 | 2.35e-34 | 124 |
| Msa1133640 | MtrunA17_Chr2g0330951 | 38.788 | 165 | 78 | 3 | 93 | 234 | 90 | 254 | 4.44e-28 | 107 |
| Msa1133640 | MtrunA17_Chr8g0340731 | 37.576 | 165 | 85 | 2 | 85 | 231 | 93 | 257 | 1.03e-26 | 104 |
| Msa1133640 | MtrunA17_Chr1g0193861 | 36.066 | 122 | 66 | 1 | 110 | 231 | 61 | 170 | 6.10e-20 | 84.0 |
| Msa1133640 | MtrunA17_Chr4g0069561 | 35.811 | 148 | 71 | 5 | 88 | 235 | 61 | 184 | 7.08e-20 | 84.3 |
| Msa1133640 | MtrunA17_Chr3g0137601 | 30.496 | 141 | 76 | 4 | 99 | 235 | 88 | 210 | 4.76e-17 | 77.4 |
| Msa1133640 | MtrunA17_Chr4g0064131 | 29.927 | 137 | 71 | 4 | 100 | 233 | 93 | 207 | 1.23e-15 | 73.2 |
| Msa1133640 | MtrunA17_Chr7g0270851 | 33.628 | 113 | 62 | 2 | 119 | 231 | 56 | 155 | 3.17e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133640 | AT4G14550.1 | 65.145 | 241 | 70 | 4 | 11 | 250 | 1 | 228 | 5.42e-101 | 293 |
| Msa1133640 | AT3G23050.1 | 61.328 | 256 | 65 | 8 | 11 | 250 | 6 | 243 | 3.01e-97 | 285 |
| Msa1133640 | AT3G04730.1 | 59.608 | 255 | 68 | 6 | 11 | 250 | 2 | 236 | 1.81e-94 | 277 |
| Msa1133640 | AT4G14550.2 | 63.478 | 230 | 70 | 4 | 11 | 239 | 1 | 217 | 3.24e-92 | 271 |
| Msa1133640 | AT1G04250.1 | 58.091 | 241 | 82 | 4 | 11 | 250 | 7 | 229 | 1.04e-90 | 267 |
| Msa1133640 | AT4G14550.3 | 61.538 | 208 | 66 | 4 | 11 | 217 | 1 | 195 | 5.85e-78 | 234 |
| Msa1133640 | AT3G23050.2 | 57.399 | 223 | 62 | 7 | 11 | 218 | 6 | 210 | 1.51e-74 | 226 |
| Msa1133640 | AT4G29080.1 | 46.840 | 269 | 111 | 5 | 11 | 249 | 38 | 304 | 1.05e-70 | 219 |
| Msa1133640 | AT5G65670.2 | 65.605 | 157 | 52 | 1 | 96 | 250 | 180 | 336 | 1.89e-69 | 217 |
| Msa1133640 | AT2G22670.3 | 44.863 | 292 | 102 | 10 | 3 | 249 | 41 | 318 | 1.28e-67 | 212 |
| Msa1133640 | AT2G22670.1 | 44.863 | 292 | 102 | 10 | 3 | 249 | 41 | 318 | 1.28e-67 | 212 |
| Msa1133640 | AT2G22670.4 | 44.863 | 292 | 102 | 10 | 3 | 249 | 58 | 335 | 1.54e-67 | 212 |
| Msa1133640 | AT5G65670.1 | 64.780 | 159 | 52 | 2 | 96 | 250 | 180 | 338 | 1.77e-67 | 212 |
| Msa1133640 | AT2G22670.5 | 44.178 | 292 | 102 | 11 | 3 | 249 | 41 | 316 | 2.40e-64 | 203 |
| Msa1133640 | AT2G22670.2 | 44.178 | 292 | 102 | 11 | 3 | 249 | 41 | 316 | 2.40e-64 | 203 |
| Msa1133640 | AT5G43700.1 | 46.305 | 203 | 74 | 6 | 50 | 239 | 2 | 182 | 2.93e-51 | 166 |
| Msa1133640 | AT1G04240.1 | 43.290 | 231 | 84 | 5 | 9 | 239 | 3 | 186 | 2.98e-51 | 166 |
| Msa1133640 | AT1G04240.2 | 43.290 | 231 | 84 | 5 | 9 | 239 | 103 | 286 | 2.83e-50 | 166 |
| Msa1133640 | AT4G14550.4 | 56.707 | 164 | 57 | 4 | 11 | 173 | 1 | 151 | 2.98e-47 | 155 |
| Msa1133640 | AT3G23030.1 | 52.414 | 145 | 40 | 2 | 94 | 238 | 55 | 170 | 1.67e-45 | 150 |
| Msa1133640 | AT3G23030.2 | 51.701 | 147 | 42 | 2 | 92 | 238 | 140 | 257 | 6.14e-45 | 152 |
| Msa1133640 | AT3G15540.1 | 39.669 | 242 | 99 | 6 | 6 | 245 | 1 | 197 | 2.58e-44 | 148 |
| Msa1133640 | AT3G23050.3 | 51.124 | 178 | 54 | 7 | 11 | 173 | 6 | 165 | 4.08e-43 | 144 |
| Msa1133640 | AT4G14560.1 | 52.414 | 145 | 40 | 4 | 92 | 235 | 48 | 164 | 5.10e-39 | 134 |
| Msa1133640 | AT1G52830.1 | 37.179 | 234 | 98 | 7 | 6 | 239 | 1 | 185 | 1.44e-38 | 133 |
| Msa1133640 | AT1G15580.1 | 38.565 | 223 | 64 | 7 | 10 | 231 | 7 | 157 | 2.27e-37 | 129 |
| Msa1133640 | AT1G04550.2 | 42.614 | 176 | 72 | 5 | 92 | 245 | 62 | 230 | 3.38e-37 | 131 |
| Msa1133640 | AT2G33310.3 | 41.279 | 172 | 75 | 5 | 94 | 244 | 70 | 236 | 1.98e-34 | 124 |
| Msa1133640 | AT2G33310.1 | 41.279 | 172 | 75 | 5 | 94 | 244 | 70 | 236 | 1.98e-34 | 124 |
| Msa1133640 | AT2G33310.2 | 40.113 | 177 | 80 | 5 | 89 | 244 | 66 | 237 | 2.50e-33 | 121 |
| Msa1133640 | AT3G16500.1 | 41.989 | 181 | 75 | 6 | 72 | 234 | 84 | 252 | 1.90e-31 | 117 |
| Msa1133640 | AT3G16500.2 | 41.989 | 181 | 75 | 6 | 72 | 234 | 84 | 252 | 2.22e-31 | 117 |
| Msa1133640 | AT4G28640.1 | 42.405 | 158 | 73 | 3 | 98 | 239 | 87 | 242 | 5.57e-31 | 115 |
| Msa1133640 | AT4G28640.3 | 42.308 | 156 | 72 | 3 | 98 | 237 | 87 | 240 | 9.83e-31 | 114 |
| Msa1133640 | AT4G28640.2 | 42.405 | 158 | 69 | 4 | 98 | 237 | 87 | 240 | 1.27e-29 | 113 |
| Msa1133640 | AT1G51950.1 | 41.818 | 165 | 63 | 5 | 96 | 234 | 93 | 250 | 5.60e-29 | 110 |
| Msa1133640 | AT5G25890.1 | 43.243 | 148 | 64 | 4 | 98 | 245 | 47 | 174 | 1.34e-28 | 107 |
| Msa1133640 | AT1G04100.1 | 39.286 | 168 | 71 | 5 | 101 | 239 | 95 | 260 | 3.21e-27 | 105 |
| Msa1133640 | AT3G17600.1 | 34.507 | 142 | 69 | 3 | 91 | 231 | 36 | 154 | 7.82e-23 | 91.7 |
| Msa1133640 | AT3G62100.1 | 38.393 | 112 | 52 | 2 | 120 | 231 | 74 | 168 | 5.79e-17 | 76.6 |
| Msa1133640 | AT4G32280.1 | 26.087 | 207 | 94 | 7 | 72 | 246 | 70 | 249 | 1.50e-16 | 77.0 |
| Msa1133640 | AT2G46990.1 | 39.796 | 98 | 46 | 1 | 134 | 231 | 86 | 170 | 1.75e-16 | 75.1 |
| Msa1133640 | AT4G32280.2 | 33.628 | 113 | 51 | 3 | 134 | 246 | 119 | 207 | 3.36e-16 | 75.1 |
| Msa1133640 | AT2G01200.2 | 27.381 | 168 | 101 | 3 | 76 | 236 | 35 | 188 | 1.35e-12 | 65.1 |
| Msa1133640 | AT2G01200.1 | 27.381 | 168 | 101 | 3 | 76 | 236 | 35 | 188 | 1.35e-12 | 65.1 |
| Msa1133640 | AT3G62100.2 | 37.374 | 99 | 45 | 2 | 120 | 218 | 74 | 155 | 8.24e-12 | 62.0 |
| Msa1133640 | AT2G46990.2 | 40.000 | 85 | 38 | 1 | 134 | 218 | 86 | 157 | 9.19e-12 | 62.0 |
| Msa1133640 | AT1G15050.2 | 35.922 | 103 | 52 | 2 | 134 | 236 | 62 | 150 | 1.53e-11 | 61.2 |
| Msa1133640 | AT1G15050.1 | 35.922 | 103 | 52 | 2 | 134 | 236 | 94 | 182 | 3.58e-11 | 60.8 |
| Msa1133640 | AT1G04550.1 | 35.849 | 106 | 46 | 3 | 92 | 175 | 62 | 167 | 5.12e-11 | 60.5 |
Find 85 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGTAATTGCATTGAAAT+TGG | 0.190674 | 7_3:-87264006 | None:intergenic |
| AGACTAGGAATTGGATTTCT+TGG | 0.218468 | 7_3:+87261968 | Msa1133640:CDS |
| ATTGGATTTCTTGGAAATAA+TGG | 0.230667 | 7_3:+87261977 | Msa1133640:CDS |
| ATGCAGAAGCCACGAATTAA+TGG | 0.238125 | 7_3:+87266636 | Msa1133640:three_prime_UTR |
| CCAAGTCTAACAACATAATT+TGG | 0.244651 | 7_3:-87266819 | None:intergenic |
| TACATTTGTGAAAGTTAGTA+TGG | 0.256580 | 7_3:+87264022 | Msa1133640:CDS |
| TGGTATGAAGAAGGAGAATA+TGG | 0.277842 | 7_3:+87261925 | Msa1133640:CDS |
| CAAACACACTAATAAGAAAT+AGG | 0.314082 | 7_3:-87266867 | None:intergenic |
| GATGCTTAATCTTTCCTCTA+AGG | 0.319822 | 7_3:+87262084 | Msa1133640:CDS |
| CATGAATGAGAGTAAGTTGA+TGG | 0.332793 | 7_3:+87264657 | Msa1133640:CDS |
| TGATGATGAAACAACTACTA+TGG | 0.333944 | 7_3:+87262057 | Msa1133640:CDS |
| GGGAAACTATAGTGTAGTAT+AGG | 0.336871 | 7_3:-87261787 | None:intergenic |
| GGAAACTATAGTGTAGTATA+GGG | 0.350145 | 7_3:-87261786 | None:intergenic |
| TACTTTGCAGGAGGCTTGGC+AGG | 0.381666 | 7_3:-87262184 | None:intergenic |
| CTCAGCAGTAGCTTCCTTAG+AGG | 0.387015 | 7_3:-87262098 | None:intergenic |
| CCAAATTATGTTGTTAGACT+TGG | 0.399340 | 7_3:+87266819 | Msa1133640:three_prime_UTR |
| ACTGAGCTGAGACTAGGAAT+TGG | 0.412509 | 7_3:+87261959 | Msa1133640:CDS |
| GGAAAGGAGGCTATTGGTAT+AGG | 0.417887 | 7_3:+87266294 | Msa1133640:CDS |
| GGAGGCTTGGCAGGATCTGC+AGG | 0.420503 | 7_3:-87262175 | None:intergenic |
| GTCACCATCCTTGTCTTCAT+AGG | 0.428945 | 7_3:-87264710 | None:intergenic |
| TCGCAGCTTTCTGATGCCTT+AGG | 0.429522 | 7_3:+87264095 | Msa1133640:CDS |
| TTGTTTAATAATTAATACTA+AGG | 0.436826 | 7_3:+87266891 | Msa1133640:three_prime_UTR |
| TACCAAAATATGACAAAAGA+TGG | 0.442557 | 7_3:-87266574 | None:intergenic |
| CTGCTATGTCCATTAATTCG+TGG | 0.448078 | 7_3:-87266645 | None:intergenic |
| CCATCCTTGTCTTCATAGGT+TGG | 0.449191 | 7_3:-87264706 | None:intergenic |
| TGGCAGGATCTGCAGGCAAA+AGG | 0.451959 | 7_3:-87262168 | None:intergenic |
| GCATTGCTAACATGTTCTTC+CGG | 0.452829 | 7_3:-87263953 | None:intergenic |
| TACTTACTTTGCAGGAGGCT+TGG | 0.454576 | 7_3:-87262188 | None:intergenic |
| TGGTGGGTTGGCCACCTGTC+CGG | 0.456500 | 7_3:+87263925 | Msa1133640:CDS |
| GAAGGAGAATATGGGATTTG+AGG | 0.458302 | 7_3:+87261934 | Msa1133640:CDS |
| ATGAAAGGAAAGGAGGCTAT+TGG | 0.465185 | 7_3:+87266288 | Msa1133640:CDS |
| CATCCTTGTCTTCATAGGTT+GGG | 0.472292 | 7_3:-87264705 | None:intergenic |
| TGCTTGTCGGTGACGTCCCA+TGG | 0.474826 | 7_3:+87264737 | Msa1133640:CDS |
| AAGTCTACTTTGCGGAGGTA+AGG | 0.481047 | 7_3:-87264053 | None:intergenic |
| CTGTGAATCTCAAGGAATGA+AGG | 0.485832 | 7_3:+87264630 | Msa1133640:CDS |
| CACGAATTAATGGACATAGC+AGG | 0.487651 | 7_3:+87266646 | Msa1133640:three_prime_UTR |
| GGCCACCTGTCCGGTCGTAC+CGG | 0.489448 | 7_3:+87263934 | Msa1133640:CDS |
| TTTGTGAAAGTTAGTATGGA+TGG | 0.492214 | 7_3:+87264026 | Msa1133640:CDS |
| AAACTCATCATGGAAGTTGT+TGG | 0.509341 | 7_3:+87261905 | Msa1133640:exon |
| GGCAGGATCTGCAGGCAAAA+GGG | 0.516414 | 7_3:-87262167 | None:intergenic |
| ATAGTGTAGTATAGGGGCAA+GGG | 0.530786 | 7_3:-87261779 | None:intergenic |
| CAGCTACTGAAGGAGCTGTA+AGG | 0.531040 | 7_3:+87262008 | Msa1133640:CDS |
| GGAAGTTGTTGGTATGAAGA+AGG | 0.543101 | 7_3:+87261916 | Msa1133640:CDS |
| GAAATAATAATAGTGGTGGA+AGG | 0.545048 | 7_3:-87261808 | None:intergenic |
| ACATGTTCTTCCGGTACGAC+CGG | 0.546140 | 7_3:-87263944 | None:intergenic |
| TGAATGATTTGTTTGCTATG+TGG | 0.547090 | 7_3:-87261830 | None:intergenic |
| TACAGCTCCTTCAGTAGCTG+TGG | 0.551148 | 7_3:-87262005 | None:intergenic |
| GATGGTGACTGGATGCTTGT+CGG | 0.553347 | 7_3:+87264724 | Msa1133640:CDS |
| TATGTATAGGGCTCAAGTGG+TGG | 0.554478 | 7_3:+87263908 | Msa1133640:intron |
| GAAGGAGCTGTAAGGAAGAG+AGG | 0.555584 | 7_3:+87262016 | Msa1133640:CDS |
| CTATGTGGAAATAATAATAG+TGG | 0.557616 | 7_3:-87261815 | None:intergenic |
| ATGTTCAGCTCCTTCACCAT+TGG | 0.558570 | 7_3:+87264122 | Msa1133640:CDS |
| ACAATTTCAAGTCTACTTTG+CGG | 0.559180 | 7_3:-87264061 | None:intergenic |
| TATAGTGTAGTATAGGGGCA+AGG | 0.560326 | 7_3:-87261780 | None:intergenic |
| TTAGTAACTATAAGCCAAGC+AGG | 0.566743 | 7_3:-87266597 | None:intergenic |
| TTCTTCCGGTACGACCGGAC+AGG | 0.571159 | 7_3:-87263939 | None:intergenic |
| AAACGTTTGCGTATCATGAA+AGG | 0.572008 | 7_3:+87266273 | Msa1133640:CDS |
| GCTTGTCGGTGACGTCCCAT+GGG | 0.572642 | 7_3:+87264738 | Msa1133640:CDS |
| GAGGAAACTGAGCTGAGACT+AGG | 0.573433 | 7_3:+87261953 | Msa1133640:CDS |
| TGTGGAAATAATAATAGTGG+TGG | 0.573954 | 7_3:-87261812 | None:intergenic |
| AAAATTACTTACTTTGCAGG+AGG | 0.575368 | 7_3:-87262193 | None:intergenic |
| TTATTACGTACCAATGGTGA+AGG | 0.582410 | 7_3:-87264132 | None:intergenic |
| TATTTCAGCACCAAGAGCCA+TGG | 0.584136 | 7_3:+87266497 | Msa1133640:intron |
| TAAGGCAACTGTGAATCTCA+AGG | 0.584506 | 7_3:+87264622 | Msa1133640:intron |
| ACGAATTAATGGACATAGCA+GGG | 0.591977 | 7_3:+87266647 | Msa1133640:three_prime_UTR |
| ATAGGGCTCAAGTGGTGGGT+TGG | 0.593236 | 7_3:+87263913 | Msa1133640:intron |
| GGTATGAAGAAGGAGAATAT+GGG | 0.605300 | 7_3:+87261926 | Msa1133640:CDS |
| ATGAAGACAAGGATGGTGAC+TGG | 0.608145 | 7_3:+87264713 | Msa1133640:CDS |
| GGATCAGCCACAGCTACTGA+AGG | 0.608178 | 7_3:+87261998 | Msa1133640:CDS |
| CATAGAAAGACTTACTCCCA+TGG | 0.609888 | 7_3:-87264754 | None:intergenic |
| AAATAATAATAGTGGTGGAA+GGG | 0.611024 | 7_3:-87261807 | None:intergenic |
| TTCCGGTACGACCGGACAGG+TGG | 0.611684 | 7_3:-87263936 | None:intergenic |
| ATGTATGTATAGGGCTCAAG+TGG | 0.612031 | 7_3:+87263905 | Msa1133640:intron |
| TAGTGTAGTATAGGGGCAAG+GGG | 0.612310 | 7_3:-87261778 | None:intergenic |
| ATAGAAAGACTTACTCCCAT+GGG | 0.617476 | 7_3:-87264753 | None:intergenic |
| GAAACTATAGTGTAGTATAG+GGG | 0.629672 | 7_3:-87261785 | None:intergenic |
| TTTGCGTATCATGAAAGGAA+AGG | 0.635348 | 7_3:+87266278 | Msa1133640:CDS |
| ATGACAAAAGATGGAGCAGG+TGG | 0.638402 | 7_3:-87266565 | None:intergenic |
| AATATGACAAAAGATGGAGC+AGG | 0.645066 | 7_3:-87266568 | None:intergenic |
| ATGTATAGGGCTCAAGTGGT+GGG | 0.646443 | 7_3:+87263909 | Msa1133640:intron |
| CTCTAAGGAAGCTACTGCTG+AGG | 0.652011 | 7_3:+87262099 | Msa1133640:CDS |
| ATTTCAAGTCTACTTTGCGG+AGG | 0.653195 | 7_3:-87264058 | None:intergenic |
| GCGTATCATGAAAGGAAAGG+AGG | 0.655523 | 7_3:+87266281 | Msa1133640:CDS |
| TGTCCCAACCTATGAAGACA+AGG | 0.658762 | 7_3:+87264702 | Msa1133640:CDS |
| CCAACCTATGAAGACAAGGA+TGG | 0.661428 | 7_3:+87264706 | Msa1133640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTTCTTAAATAAAAAAAA+TGG | - | chr7_3:87262556-87262575 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATTTAAGAAAGA+TGG | + | chr7_3:87262556-87262575 | Msa1133640:intron | 10.0% |
| !!! | TTCTTTTAATATAAAAATAC+TGG | + | chr7_3:87263082-87263101 | Msa1133640:intron | 10.0% |
| !!! | AACTTATATTTATAGATTTT+TGG | + | chr7_3:87263369-87263388 | Msa1133640:intron | 10.0% |
| !!! | ACTTATATTTATAGATTTTT+GGG | + | chr7_3:87263370-87263389 | Msa1133640:intron | 10.0% |
| !! | TAAAAAATAAAGATTATAAC+AGG | - | chr7_3:87263552-87263571 | None:intergenic | 10.0% |
| !!! | TGTTATAATCTTTATTTTTT+AGG | + | chr7_3:87263551-87263570 | Msa1133640:intron | 10.0% |
| !! | CTTATTTAAAAAAAAATGTT+TGG | - | chr7_3:87263601-87263620 | None:intergenic | 10.0% |
| !! | AATTTACCAAATTTATTATT+AGG | - | chr7_3:87263666-87263685 | None:intergenic | 10.0% |
| !! | AGTAATGTTATATATATATA+TGG | + | chr7_3:87263710-87263729 | Msa1133640:intron | 10.0% |
| !! | TGTAAATATAATTGATTATA+AGG | + | chr7_3:87263788-87263807 | Msa1133640:intron | 10.0% |
| !!! | CATTTTATTTTATTTTCTAA+TGG | + | chr7_3:87264797-87264816 | Msa1133640:intron | 10.0% |
| !! | TATAAAATTAATATATTTGC+GGG | + | chr7_3:87265018-87265037 | Msa1133640:intron | 10.0% |
| !! | CAAAAAATTAAAAATATAGT+GGG | - | chr7_3:87265131-87265150 | None:intergenic | 10.0% |
| !! | ACAAAAAATTAAAAATATAG+TGG | - | chr7_3:87265132-87265151 | None:intergenic | 10.0% |
| !! | TAATTATATTAATCATTAAC+GGG | + | chr7_3:87265239-87265258 | Msa1133640:intron | 10.0% |
| !! | TAAAGTTATAGAAAATTTAA+AGG | - | chr7_3:87265535-87265554 | None:intergenic | 10.0% |
| !!! | GAATTATTATATTTTCAATT+TGG | + | chr7_3:87265623-87265642 | Msa1133640:intron | 10.0% |
| !! | TAAAATAAAAGTTATATGTT+TGG | + | chr7_3:87265840-87265859 | Msa1133640:intron | 10.0% |
| !! | ATATTATCATAAATAATGTA+AGG | - | chr7_3:87265909-87265928 | None:intergenic | 10.0% |
| !!! | TTTTTTACTAAATTATTACA+AGG | + | chr7_3:87266131-87266150 | Msa1133640:intron | 10.0% |
| !!! | TTTTTACTAAATTATTACAA+GGG | + | chr7_3:87266132-87266151 | Msa1133640:intron | 10.0% |
| !! | TTGTTTAATAATTAATACTA+AGG | + | chr7_3:87266891-87266910 | Msa1133640:three_prime_UTR | 10.0% |
| !!! | TAATCAAATTTTTTTTTTGG+AGG | + | chr7_3:87262216-87262235 | Msa1133640:intron | 15.0% |
| !! | TAAAAAATTCCAAGATATAT+AGG | + | chr7_3:87262368-87262387 | Msa1133640:intron | 15.0% |
| !! | ATCATATTCAAATTCAAATT+TGG | + | chr7_3:87262495-87262514 | Msa1133640:intron | 15.0% |
| !! | TTCTTAAATAAAAAAAATGG+TGG | - | chr7_3:87262553-87262572 | None:intergenic | 15.0% |
| !!! | AATTATATTCTTCTGAAATA+TGG | + | chr7_3:87262777-87262796 | Msa1133640:intron | 15.0% |
| !! | TAAGAATAAATAAATAGATC+CGG | + | chr7_3:87263233-87263252 | Msa1133640:intron | 15.0% |
| !!! | TTTTTTATAATTTTTCTGAC+CGG | - | chr7_3:87263255-87263274 | None:intergenic | 15.0% |
| !! | TAGAAAAAAAATCAAAGAAA+AGG | + | chr7_3:87263478-87263497 | Msa1133640:intron | 15.0% |
| !! | AGAAAAAAAATCAAAGAAAA+GGG | + | chr7_3:87263479-87263498 | Msa1133640:intron | 15.0% |
| !! | ATTTACATTTGTATATTTCA+AGG | + | chr7_3:87263631-87263650 | Msa1133640:intron | 15.0% |
| !! | GTTATTCCTAATAATAAATT+TGG | + | chr7_3:87263657-87263676 | Msa1133640:intron | 15.0% |
| !!! | AAAACAAACACATTTTATTT+TGG | + | chr7_3:87263687-87263706 | Msa1133640:intron | 15.0% |
| !!! | TTCAATATATAATTTGTTTG+GGG | - | chr7_3:87263743-87263762 | None:intergenic | 15.0% |
| !!! | CTTCAATATATAATTTGTTT+GGG | - | chr7_3:87263744-87263763 | None:intergenic | 15.0% |
| !!! | ACTTCAATATATAATTTGTT+TGG | - | chr7_3:87263745-87263764 | None:intergenic | 15.0% |
| !!! | ATATGTAGTCTTAAAATAAA+TGG | + | chr7_3:87263871-87263890 | Msa1133640:intron | 15.0% |
| !!! | TATCTTATTTGATTCTTTAA+AGG | + | chr7_3:87264973-87264992 | Msa1133640:intron | 15.0% |
| !!! | ATCTTATTTGATTCTTTAAA+GGG | + | chr7_3:87264974-87264993 | Msa1133640:intron | 15.0% |
| !!! | ATTATATAATGAGCTTTTTT+AGG | + | chr7_3:87265214-87265233 | Msa1133640:intron | 15.0% |
| !!! | TTATCATTTTTTTGATGTAT+TGG | - | chr7_3:87265933-87265952 | None:intergenic | 15.0% |
| !! | TATAAAAGTTACAATGAAAA+AGG | - | chr7_3:87265964-87265983 | None:intergenic | 15.0% |
| !!! | TTTTATATGATTAGTCAAAT+CGG | + | chr7_3:87265977-87265996 | Msa1133640:intron | 15.0% |
| !!! | TTTAAAACAGCAAAATATAT+AGG | - | chr7_3:87266079-87266098 | None:intergenic | 15.0% |
| !!! | TTTTATTGAAGAAGATTATA+AGG | + | chr7_3:87266165-87266184 | Msa1133640:intron | 15.0% |
| !! | TTTATTGAAGAAGATTATAA+GGG | + | chr7_3:87266166-87266185 | Msa1133640:intron | 15.0% |
| !! | TTTAATTACAAATGAAATGA+GGG | - | chr7_3:87266377-87266396 | None:intergenic | 15.0% |
| !!! | TTTTTGATAAAATTGTTCTA+TGG | + | chr7_3:87266712-87266731 | Msa1133640:three_prime_UTR | 15.0% |
| !! | TTAAAAATTACTTACTTTGC+AGG | - | chr7_3:87262199-87262218 | None:intergenic | 20.0% |
| !! | ATTAAATAGAAACTTTCCTA+TGG | - | chr7_3:87262961-87262980 | None:intergenic | 20.0% |
| !! | TAACAGATAACGTAAAATAT+TGG | + | chr7_3:87263051-87263070 | Msa1133640:intron | 20.0% |
| !!! | AGTTTACTAAATTTTATTCC+TGG | + | chr7_3:87263430-87263449 | Msa1133640:intron | 20.0% |
| !! | ATACTCCAAAAAATGTTATT+GGG | + | chr7_3:87263453-87263472 | Msa1133640:intron | 20.0% |
| !!! | TCTTTATTTTTTAGGTTCTT+CGG | + | chr7_3:87263559-87263578 | Msa1133640:intron | 20.0% |
| !!! | ATTTTAAGACTACATATTGA+TGG | - | chr7_3:87263868-87263887 | None:intergenic | 20.0% |
| !! | ATTAATGTGTATGTATGTAT+AGG | + | chr7_3:87263895-87263914 | Msa1133640:intron | 20.0% |
| !! | TTAATGTGTATGTATGTATA+GGG | + | chr7_3:87263896-87263915 | Msa1133640:intron | 20.0% |
| !! | AAATGTAATTGCATTGAAAT+TGG | - | chr7_3:87264009-87264028 | None:intergenic | 20.0% |
| !!! | TTATTTTCAATCTCATTTGT+CGG | - | chr7_3:87264217-87264236 | None:intergenic | 20.0% |
| !!! | AACTGTTTAGAACAATTTTA+CGG | + | chr7_3:87264421-87264440 | Msa1133640:intron | 20.0% |
| !!! | TAGTATATATTTTGTTTGAG+TGG | - | chr7_3:87264516-87264535 | None:intergenic | 20.0% |
| !!! | ATTACATTAAAAACCCTTTT+GGG | - | chr7_3:87264553-87264572 | None:intergenic | 20.0% |
| !! | ATTAATTCTGTGTTTATGTA+AGG | + | chr7_3:87264604-87264623 | Msa1133640:intron | 20.0% |
| !! | AAAAATCTAATTAAGGATGT+GGG | - | chr7_3:87265318-87265337 | None:intergenic | 20.0% |
| !! | AGGATTCAAAAATCTAATTA+AGG | - | chr7_3:87265325-87265344 | None:intergenic | 20.0% |
| !! | AGAAAATTTAAAGGATATTG+AGG | - | chr7_3:87265526-87265545 | None:intergenic | 20.0% |
| !! | GAAGTCAAAAATTAAACTTA+AGG | - | chr7_3:87265652-87265671 | None:intergenic | 20.0% |
| !! | TGCACATTAATTAATGTAAT+TGG | + | chr7_3:87266010-87266029 | Msa1133640:intron | 20.0% |
| !! | GTTTAATTACAAATGAAATG+AGG | - | chr7_3:87266378-87266397 | None:intergenic | 20.0% |
| !!! | TTGATTTGTGTAATGTTTTA+TGG | + | chr7_3:87266682-87266701 | Msa1133640:three_prime_UTR | 20.0% |
| !! | AAATAATAATAGTGGTGGAA+GGG | - | chr7_3:87261810-87261829 | None:intergenic | 25.0% |
| ! | CTATGTGGAAATAATAATAG+TGG | - | chr7_3:87261818-87261837 | None:intergenic | 25.0% |
| ! | ATTGGATTTCTTGGAAATAA+TGG | + | chr7_3:87261977-87261996 | Msa1133640:CDS | 25.0% |
| ! | AAAATTCCAAGATATATAGG+AGG | + | chr7_3:87262371-87262390 | Msa1133640:intron | 25.0% |
| !!! | ACATCTTGATTTTTTTTCTC+TGG | - | chr7_3:87262400-87262419 | None:intergenic | 25.0% |
| ! | GAACTAGTTATATGCAAATT+AGG | + | chr7_3:87262433-87262452 | Msa1133640:intron | 25.0% |
| ! | TACATTGTGCAACATAAAAA+TGG | + | chr7_3:87262813-87262832 | Msa1133640:intron | 25.0% |
| ! | ACAAACTTGAAACAATTCAA+TGG | - | chr7_3:87262907-87262926 | None:intergenic | 25.0% |
| !!! | ATTGAATTGTTTCAAGTTTG+TGG | + | chr7_3:87262906-87262925 | Msa1133640:intron | 25.0% |
| !!! | AAAGCAGACATGTATTTTTT+TGG | - | chr7_3:87263323-87263342 | None:intergenic | 25.0% |
| ! | GATACTCCAAAAAATGTTAT+TGG | + | chr7_3:87263452-87263471 | Msa1133640:intron | 25.0% |
| !!! | CTATTCCCAATAACATTTTT+TGG | - | chr7_3:87263461-87263480 | None:intergenic | 25.0% |
| ! | AAAAAAATCAAAGAAAAGGG+TGG | + | chr7_3:87263482-87263501 | Msa1133640:intron | 25.0% |
| ! | AAAAAATCAAAGAAAAGGGT+GGG | + | chr7_3:87263483-87263502 | Msa1133640:intron | 25.0% |
| ! | TACATTTGTGAAAGTTAGTA+TGG | + | chr7_3:87264022-87264041 | Msa1133640:CDS | 25.0% |
| ! | ATGAATTTATTACGTACCAA+TGG | - | chr7_3:87264141-87264160 | None:intergenic | 25.0% |
| !!! | ACTGTTTAGAACAATTTTAC+GGG | + | chr7_3:87264422-87264441 | Msa1133640:intron | 25.0% |
| !! | CATTACATTAAAAACCCTTT+TGG | - | chr7_3:87264554-87264573 | None:intergenic | 25.0% |
| !! | TATTTTCTAATGGAAGTCAA+CGG | + | chr7_3:87264807-87264826 | Msa1133640:intron | 25.0% |
| ! | ATTAATATATTTGCGGGAAT+TGG | + | chr7_3:87265024-87265043 | Msa1133640:intron | 25.0% |
| ! | TATTTACTTGTAAGCAAAGA+TGG | + | chr7_3:87265076-87265095 | Msa1133640:intron | 25.0% |
| ! | CAAAAATCTAATTAAGGATG+TGG | - | chr7_3:87265319-87265338 | None:intergenic | 25.0% |
| !!! | TTTTGCTATAAGTCATTCTA+TGG | + | chr7_3:87265496-87265515 | Msa1133640:intron | 25.0% |
| ! | GAAAAAGTTAGCACAATATA+AGG | - | chr7_3:87265801-87265820 | None:intergenic | 25.0% |
| !! | ATATGTTTGGTGAAATCTTT+CGG | + | chr7_3:87265853-87265872 | Msa1133640:intron | 25.0% |
| ! | TTTAACTAGTTATAAAGCAC+AGG | + | chr7_3:87266195-87266214 | Msa1133640:intron | 25.0% |
| ! | TGAAATTTACTTCTTGCAAA+TGG | - | chr7_3:87266346-87266365 | None:intergenic | 25.0% |
| ! | TAAACACTTGACTAAATAGA+AGG | - | chr7_3:87266400-87266419 | None:intergenic | 25.0% |
| ! | TACCAAAATATGACAAAAGA+TGG | - | chr7_3:87266577-87266596 | None:intergenic | 25.0% |
| ! | CAAACACACTAATAAGAAAT+AGG | - | chr7_3:87266870-87266889 | None:intergenic | 25.0% |
| GAAACTATAGTGTAGTATAG+GGG | - | chr7_3:87261788-87261807 | None:intergenic | 30.0% | |
| GGAAACTATAGTGTAGTATA+GGG | - | chr7_3:87261789-87261808 | None:intergenic | 30.0% | |
| ! | GAAATAATAATAGTGGTGGA+AGG | - | chr7_3:87261811-87261830 | None:intergenic | 30.0% |
| TGTGGAAATAATAATAGTGG+TGG | - | chr7_3:87261815-87261834 | None:intergenic | 30.0% | |
| !! | TGAATGATTTGTTTGCTATG+TGG | - | chr7_3:87261833-87261852 | None:intergenic | 30.0% |
| ! | TGATGATGAAACAACTACTA+TGG | + | chr7_3:87262057-87262076 | Msa1133640:CDS | 30.0% |
| AAAATTACTTACTTTGCAGG+AGG | - | chr7_3:87262196-87262215 | None:intergenic | 30.0% | |
| ! | AGTTTGTGTTGTTAACTATG+TGG | - | chr7_3:87262462-87262481 | None:intergenic | 30.0% |
| ATAGCACATGTACAAATTCA+TGG | + | chr7_3:87262632-87262651 | Msa1133640:intron | 30.0% | |
| !!! | TAACATTTTTTGGAGTATCC+AGG | - | chr7_3:87263451-87263470 | None:intergenic | 30.0% |
| GAATTTATTCTCATCTCCAT+GGG | - | chr7_3:87263518-87263537 | None:intergenic | 30.0% | |
| TGAATTTATTCTCATCTCCA+TGG | - | chr7_3:87263519-87263538 | None:intergenic | 30.0% | |
| TTTGTGAAAGTTAGTATGGA+TGG | + | chr7_3:87264026-87264045 | Msa1133640:CDS | 30.0% | |
| ! | ACAATTTCAAGTCTACTTTG+CGG | - | chr7_3:87264064-87264083 | None:intergenic | 30.0% |
| CAAAAACAAAGGTAAAACTG+AGG | - | chr7_3:87264174-87264193 | None:intergenic | 30.0% | |
| ! | CTAGTTCTCTACAAAAACAA+AGG | - | chr7_3:87264185-87264204 | None:intergenic | 30.0% |
| GACAACCAAAATATTGGTAA+GGG | + | chr7_3:87264444-87264463 | Msa1133640:intron | 30.0% | |
| ! | TTCTTCCCTTACCAATATTT+TGG | - | chr7_3:87264452-87264471 | None:intergenic | 30.0% |
| TTTCAAACGAATTTGCATTG+AGG | - | chr7_3:87265345-87265364 | None:intergenic | 30.0% | |
| !!! | CGGTTTTAAAAAATTTCGAG+AGG | + | chr7_3:87265690-87265709 | Msa1133640:intron | 30.0% |
| TTACTACACCACATATACAA+GGG | - | chr7_3:87265728-87265747 | None:intergenic | 30.0% | |
| TTTACTACACCACATATACA+AGG | - | chr7_3:87265729-87265748 | None:intergenic | 30.0% | |
| GGTGTAGTAAATGATATATC+TGG | + | chr7_3:87265738-87265757 | Msa1133640:intron | 30.0% | |
| ! | CTCCATCTTTTGTCATATTT+TGG | + | chr7_3:87266572-87266591 | Msa1133640:three_prime_UTR | 30.0% |
| CCAAGTCTAACAACATAATT+TGG | - | chr7_3:87266822-87266841 | None:intergenic | 30.0% | |
| CCAAATTATGTTGTTAGACT+TGG | + | chr7_3:87266819-87266838 | Msa1133640:three_prime_UTR | 30.0% | |
| GGGAAACTATAGTGTAGTAT+AGG | - | chr7_3:87261790-87261809 | None:intergenic | 35.0% | |
| AGAGAGTGAAAAACTCATCA+TGG | + | chr7_3:87261895-87261914 | Msa1133640:exon | 35.0% | |
| AAACTCATCATGGAAGTTGT+TGG | + | chr7_3:87261905-87261924 | Msa1133640:exon | 35.0% | |
| TGGTATGAAGAAGGAGAATA+TGG | + | chr7_3:87261925-87261944 | Msa1133640:CDS | 35.0% | |
| GGTATGAAGAAGGAGAATAT+GGG | + | chr7_3:87261926-87261945 | Msa1133640:CDS | 35.0% | |
| AGACTAGGAATTGGATTTCT+TGG | + | chr7_3:87261968-87261987 | Msa1133640:CDS | 35.0% | |
| GATGCTTAATCTTTCCTCTA+AGG | + | chr7_3:87262084-87262103 | Msa1133640:CDS | 35.0% | |
| ! | CTTCTCTTTTTGCAAAGTCT+TGG | - | chr7_3:87262146-87262165 | None:intergenic | 35.0% |
| TCATTTACGAACCACTTATG+TGG | + | chr7_3:87262285-87262304 | Msa1133640:intron | 35.0% | |
| TGGTTTCCTCCTATATATCT+TGG | - | chr7_3:87262380-87262399 | None:intergenic | 35.0% | |
| GAGACATATAGATCAGAAGA+TGG | + | chr7_3:87262691-87262710 | Msa1133640:intron | 35.0% | |
| ATATCATGCTATGACTGATG+AGG | - | chr7_3:87262986-87263005 | None:intergenic | 35.0% | |
| ATACACATGTGCATAGCATA+TGG | - | chr7_3:87263827-87263846 | None:intergenic | 35.0% | |
| TTATTACGTACCAATGGTGA+AGG | - | chr7_3:87264135-87264154 | None:intergenic | 35.0% | |
| TTACGGGACAACCAAAATAT+TGG | + | chr7_3:87264438-87264457 | Msa1133640:intron | 35.0% | |
| GGACAACCAAAATATTGGTA+AGG | + | chr7_3:87264443-87264462 | Msa1133640:intron | 35.0% | |
| TCAACATTAGTTGTCCCAAA+AGG | + | chr7_3:87264536-87264555 | Msa1133640:intron | 35.0% | |
| CAACATTAGTTGTCCCAAAA+GGG | + | chr7_3:87264537-87264556 | Msa1133640:intron | 35.0% | |
| ! | CATGAATGAGAGTAAGTTGA+TGG | + | chr7_3:87264657-87264676 | Msa1133640:CDS | 35.0% |
| ATAGAAAGACTTACTCCCAT+GGG | - | chr7_3:87264756-87264775 | None:intergenic | 35.0% | |
| !! | GAATCTTTGGTAGTGTATGA+GGG | - | chr7_3:87265406-87265425 | None:intergenic | 35.0% |
| !! | TGAATCTTTGGTAGTGTATG+AGG | - | chr7_3:87265407-87265426 | None:intergenic | 35.0% |
| ATCACAAATGCAGATGTAGA+AGG | - | chr7_3:87265460-87265479 | None:intergenic | 35.0% | |
| TAGACAAACCCTTGTATATG+TGG | + | chr7_3:87265717-87265736 | Msa1133640:intron | 35.0% | |
| ! | TATAAGGTGTCATAAGCACA+TGG | - | chr7_3:87265785-87265804 | None:intergenic | 35.0% |
| AAACGTTTGCGTATCATGAA+AGG | + | chr7_3:87266273-87266292 | Msa1133640:CDS | 35.0% | |
| TTTGCGTATCATGAAAGGAA+AGG | + | chr7_3:87266278-87266297 | Msa1133640:CDS | 35.0% | |
| AATATGACAAAAGATGGAGC+AGG | - | chr7_3:87266571-87266590 | None:intergenic | 35.0% | |
| TTAGTAACTATAAGCCAAGC+AGG | - | chr7_3:87266600-87266619 | None:intergenic | 35.0% | |
| ! | ACGAATTAATGGACATAGCA+GGG | + | chr7_3:87266647-87266666 | Msa1133640:three_prime_UTR | 35.0% |
| ATAGTGTAGTATAGGGGCAA+GGG | - | chr7_3:87261782-87261801 | None:intergenic | 40.0% | |
| TATAGTGTAGTATAGGGGCA+AGG | - | chr7_3:87261783-87261802 | None:intergenic | 40.0% | |
| GGAAGTTGTTGGTATGAAGA+AGG | + | chr7_3:87261916-87261935 | Msa1133640:CDS | 40.0% | |
| GAAGGAGAATATGGGATTTG+AGG | + | chr7_3:87261934-87261953 | Msa1133640:CDS | 40.0% | |
| !!! | GTCTTGGTGGTTTTATCACT+TGG | - | chr7_3:87262130-87262149 | None:intergenic | 40.0% |
| ! | CTCTTTTTGCAAAGTCTTGG+TGG | - | chr7_3:87262143-87262162 | None:intergenic | 40.0% |
| AAGTCACTCTACCACATAAG+TGG | - | chr7_3:87262299-87262318 | None:intergenic | 40.0% | |
| ACTATGATGCAGTACACCAT+AGG | + | chr7_3:87262942-87262961 | Msa1133640:intron | 40.0% | |
| !! | GTCTGCTTTTGTAAGAGCTT+AGG | + | chr7_3:87263334-87263353 | Msa1133640:intron | 40.0% |
| ATGTATGTATAGGGCTCAAG+TGG | + | chr7_3:87263905-87263924 | Msa1133640:intron | 40.0% | |
| GCATTGCTAACATGTTCTTC+CGG | - | chr7_3:87263956-87263975 | None:intergenic | 40.0% | |
| ! | ATTTCAAGTCTACTTTGCGG+AGG | - | chr7_3:87264061-87264080 | None:intergenic | 40.0% |
| AGGGAAGAATAAAGATCTCG+AGG | + | chr7_3:87264463-87264482 | Msa1133640:intron | 40.0% | |
| TAAGGCAACTGTGAATCTCA+AGG | + | chr7_3:87264622-87264641 | Msa1133640:intron | 40.0% | |
| CTGTGAATCTCAAGGAATGA+AGG | + | chr7_3:87264630-87264649 | Msa1133640:CDS | 40.0% | |
| CATCCTTGTCTTCATAGGTT+GGG | - | chr7_3:87264708-87264727 | None:intergenic | 40.0% | |
| CATAGAAAGACTTACTCCCA+TGG | - | chr7_3:87264757-87264776 | None:intergenic | 40.0% | |
| TAAGCAAAGATGGAGCTAGA+AGG | + | chr7_3:87265086-87265105 | Msa1133640:intron | 40.0% | |
| AAGCAAAGATGGAGCTAGAA+GGG | + | chr7_3:87265087-87265106 | Msa1133640:intron | 40.0% | |
| AATCGTGAGCAGTGAATCTT+TGG | - | chr7_3:87265419-87265438 | None:intergenic | 40.0% | |
| TTCACTGCTCACGATTTCAT+CGG | + | chr7_3:87265423-87265442 | Msa1133640:intron | 40.0% | |
| ! | GGTGTCATAACTTATGCACA+TGG | - | chr7_3:87265888-87265907 | None:intergenic | 40.0% |
| !! | CTCTGGTTAGGTCTTGTTAT+CGG | + | chr7_3:87266041-87266060 | Msa1133640:intron | 40.0% |
| GCATGATTCAACAAACATCC+TGG | - | chr7_3:87266253-87266272 | None:intergenic | 40.0% | |
| ATGAAAGGAAAGGAGGCTAT+TGG | + | chr7_3:87266288-87266307 | Msa1133640:CDS | 40.0% | |
| ! | TTGCATTTTTCCATGGCTCT+TGG | - | chr7_3:87266510-87266529 | None:intergenic | 40.0% |
| ! | CCTGTTCTTGCATTTTTCCA+TGG | - | chr7_3:87266517-87266536 | None:intergenic | 40.0% |
| CCATGGAAAAATGCAAGAAC+AGG | + | chr7_3:87266514-87266533 | Msa1133640:CDS | 40.0% | |
| !!! | GTCATATTTTGGTACCTGCT+TGG | + | chr7_3:87266583-87266602 | Msa1133640:three_prime_UTR | 40.0% |
| ATGCAGAAGCCACGAATTAA+TGG | + | chr7_3:87266636-87266655 | Msa1133640:three_prime_UTR | 40.0% | |
| CTGCTATGTCCATTAATTCG+TGG | - | chr7_3:87266648-87266667 | None:intergenic | 40.0% | |
| ! | CACGAATTAATGGACATAGC+AGG | + | chr7_3:87266646-87266665 | Msa1133640:three_prime_UTR | 40.0% |
| TAGTGTAGTATAGGGGCAAG+GGG | - | chr7_3:87261781-87261800 | None:intergenic | 45.0% | |
| ACTGAGCTGAGACTAGGAAT+TGG | + | chr7_3:87261959-87261978 | Msa1133640:CDS | 45.0% | |
| TACTTACTTTGCAGGAGGCT+TGG | - | chr7_3:87262191-87262210 | None:intergenic | 45.0% | |
| ATTTGTCCCACATGCCTAGT+CGG | + | chr7_3:87262860-87262879 | Msa1133640:intron | 45.0% | |
| CTATAACCGACTAGGCATGT+GGG | - | chr7_3:87262869-87262888 | None:intergenic | 45.0% | |
| TCTATAACCGACTAGGCATG+TGG | - | chr7_3:87262870-87262889 | None:intergenic | 45.0% | |
| ACATGCCTAGTCGGTTATAG+AGG | + | chr7_3:87262869-87262888 | Msa1133640:intron | 45.0% | |
| TATGTATAGGGCTCAAGTGG+TGG | + | chr7_3:87263908-87263927 | Msa1133640:intron | 45.0% | |
| ATGTATAGGGCTCAAGTGGT+GGG | + | chr7_3:87263909-87263928 | Msa1133640:intron | 45.0% | |
| AAGTCTACTTTGCGGAGGTA+AGG | - | chr7_3:87264056-87264075 | None:intergenic | 45.0% | |
| ! | GGAGCTGAACATTTTGCCTA+AGG | - | chr7_3:87264114-87264133 | None:intergenic | 45.0% |
| ATGTTCAGCTCCTTCACCAT+TGG | + | chr7_3:87264122-87264141 | Msa1133640:CDS | 45.0% | |
| TGTCCCAACCTATGAAGACA+AGG | + | chr7_3:87264702-87264721 | Msa1133640:CDS | 45.0% | |
| CCATCCTTGTCTTCATAGGT+TGG | - | chr7_3:87264709-87264728 | None:intergenic | 45.0% | |
| CCAACCTATGAAGACAAGGA+TGG | + | chr7_3:87264706-87264725 | Msa1133640:CDS | 45.0% | |
| GTCACCATCCTTGTCTTCAT+AGG | - | chr7_3:87264713-87264732 | None:intergenic | 45.0% | |
| ATGAAGACAAGGATGGTGAC+TGG | + | chr7_3:87264713-87264732 | Msa1133640:CDS | 45.0% | |
| TGACTTCGTACCGTCTTGTA+AGG | + | chr7_3:87265665-87265684 | Msa1133640:intron | 45.0% | |
| GACTTCGTACCGTCTTGTAA+GGG | + | chr7_3:87265666-87265685 | Msa1133640:intron | 45.0% | |
| ACTTCGTACCGTCTTGTAAG+GGG | + | chr7_3:87265667-87265686 | Msa1133640:intron | 45.0% | |
| TAAAACCGCCCCTTACAAGA+CGG | - | chr7_3:87265678-87265697 | None:intergenic | 45.0% | |
| AACAAGACCTAACCAGAGCA+GGG | - | chr7_3:87266039-87266058 | None:intergenic | 45.0% | |
| TAACAAGACCTAACCAGAGC+AGG | - | chr7_3:87266040-87266059 | None:intergenic | 45.0% | |
| !! | GTTAGGTCTTGTTATCGGAG+TGG | + | chr7_3:87266046-87266065 | Msa1133640:intron | 45.0% |
| ACAGGCTTAGCACTCTAACA+TGG | + | chr7_3:87266213-87266232 | Msa1133640:intron | 45.0% | |
| ATGGACTCTTCATGTCAACC+AGG | + | chr7_3:87266232-87266251 | Msa1133640:intron | 45.0% | |
| GCGTATCATGAAAGGAAAGG+AGG | + | chr7_3:87266281-87266300 | Msa1133640:CDS | 45.0% | |
| GGAAAGGAGGCTATTGGTAT+AGG | + | chr7_3:87266294-87266313 | Msa1133640:CDS | 45.0% | |
| TATTTCAGCACCAAGAGCCA+TGG | + | chr7_3:87266497-87266516 | Msa1133640:intron | 45.0% | |
| ATGACAAAAGATGGAGCAGG+TGG | - | chr7_3:87266568-87266587 | None:intergenic | 45.0% | |
| !!! | TTTTAATCAAATTTTTTTTT+TGG | + | chr7_3:87262213-87262232 | Msa1133640:intron | 5.0% |
| !! | AATTATATTTACAATAATTA+TGG | - | chr7_3:87263781-87263800 | None:intergenic | 5.0% |
| !! | TTATAAAATTAATATATTTG+CGG | + | chr7_3:87265017-87265036 | Msa1133640:intron | 5.0% |
| !! | TTAATTATATTAATCATTAA+CGG | + | chr7_3:87265238-87265257 | Msa1133640:intron | 5.0% |
| ! | ATAGGGGCAAGGGGAGTTTT+TGG | - | chr7_3:87261772-87261791 | None:intergenic | 50.0% |
| GAGGAAACTGAGCTGAGACT+AGG | + | chr7_3:87261953-87261972 | Msa1133640:CDS | 50.0% | |
| TACAGCTCCTTCAGTAGCTG+TGG | - | chr7_3:87262008-87262027 | None:intergenic | 50.0% | |
| CAGCTACTGAAGGAGCTGTA+AGG | + | chr7_3:87262008-87262027 | Msa1133640:CDS | 50.0% | |
| GAAGGAGCTGTAAGGAAGAG+AGG | + | chr7_3:87262016-87262035 | Msa1133640:CDS | 50.0% | |
| CTCAGCAGTAGCTTCCTTAG+AGG | - | chr7_3:87262101-87262120 | None:intergenic | 50.0% | |
| ! | CTCTAAGGAAGCTACTGCTG+AGG | + | chr7_3:87262099-87262118 | Msa1133640:CDS | 50.0% |
| TCTCGCCTCTATAACCGACT+AGG | - | chr7_3:87262877-87262896 | None:intergenic | 50.0% | |
| GGGTGGGAATAAAGTTCCCA+TGG | + | chr7_3:87263499-87263518 | Msa1133640:intron | 50.0% | |
| ACATGTTCTTCCGGTACGAC+CGG | - | chr7_3:87263947-87263966 | None:intergenic | 50.0% | |
| TCGCAGCTTTCTGATGCCTT+AGG | + | chr7_3:87264095-87264114 | Msa1133640:CDS | 50.0% | |
| ! | ATCTCGAGGAGCATACTCTC+AGG | + | chr7_3:87264477-87264496 | Msa1133640:intron | 50.0% |
| GATGGTGACTGGATGCTTGT+CGG | + | chr7_3:87264724-87264743 | Msa1133640:CDS | 50.0% | |
| TGTAATTGGATCCCCTGCTC+TGG | + | chr7_3:87266024-87266043 | Msa1133640:intron | 50.0% | |
| ACAAGACCTAACCAGAGCAG+GGG | - | chr7_3:87266038-87266057 | None:intergenic | 50.0% | |
| !! | AGGTCTTGTTATCGGAGTGG+TGG | + | chr7_3:87266049-87266068 | Msa1133640:intron | 50.0% |
| GGATCAGCCACAGCTACTGA+AGG | + | chr7_3:87261998-87262017 | Msa1133640:CDS | 55.0% | |
| GGCAGGATCTGCAGGCAAAA+GGG | - | chr7_3:87262170-87262189 | None:intergenic | 55.0% | |
| TGGCAGGATCTGCAGGCAAA+AGG | - | chr7_3:87262171-87262190 | None:intergenic | 55.0% | |
| TACTTTGCAGGAGGCTTGGC+AGG | - | chr7_3:87262187-87262206 | None:intergenic | 55.0% | |
| !! | ATAGGGCTCAAGTGGTGGGT+TGG | + | chr7_3:87263913-87263932 | Msa1133640:intron | 55.0% |
| TCGTACCGTCTTGTAAGGGG+CGG | + | chr7_3:87265670-87265689 | Msa1133640:intron | 55.0% | |
| TTGGATCCCCTGCTCTGGTT+AGG | + | chr7_3:87266029-87266048 | Msa1133640:intron | 55.0% | |
| TTCTTCCGGTACGACCGGAC+AGG | - | chr7_3:87263942-87263961 | None:intergenic | 60.0% | |
| TGCTTGTCGGTGACGTCCCA+TGG | + | chr7_3:87264737-87264756 | Msa1133640:CDS | 60.0% | |
| GCTTGTCGGTGACGTCCCAT+GGG | + | chr7_3:87264738-87264757 | Msa1133640:CDS | 60.0% | |
| GAGCTAGAAGGGACCAGCAG+AGG | + | chr7_3:87265098-87265117 | Msa1133640:intron | 60.0% | |
| GAAGGGACCAGCAGAGGTCA+TGG | + | chr7_3:87265104-87265123 | Msa1133640:intron | 60.0% | |
| AGTGGGACCATGACCTCTGC+TGG | - | chr7_3:87265114-87265133 | None:intergenic | 60.0% | |
| GGAGGCTTGGCAGGATCTGC+AGG | - | chr7_3:87262178-87262197 | None:intergenic | 65.0% | |
| !! | TGGTGGGTTGGCCACCTGTC+CGG | + | chr7_3:87263925-87263944 | Msa1133640:CDS | 65.0% |
| TTCCGGTACGACCGGACAGG+TGG | - | chr7_3:87263939-87263958 | None:intergenic | 65.0% | |
| GGCCACCTGTCCGGTCGTAC+CGG | + | chr7_3:87263934-87263953 | Msa1133640:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 87261769 | 87266947 | 87261769 | ID=Msa1133640;Name=Msa1133640 |
| chr7_3 | mRNA | 87261769 | 87266947 | 87261769 | ID=Msa1133640-mRNA-1;Parent=Msa1133640;Name=Msa1133640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=145|1|1|1|0.5|0.4|5|405|250 |
| chr7_3 | exon | 87261769 | 87262203 | 87261769 | ID=Msa1133640-mRNA-1:exon:26219;Parent=Msa1133640-mRNA-1 |
| chr7_3 | exon | 87263917 | 87264143 | 87263917 | ID=Msa1133640-mRNA-1:exon:26220;Parent=Msa1133640-mRNA-1 |
| chr7_3 | exon | 87264626 | 87264761 | 87264626 | ID=Msa1133640-mRNA-1:exon:26221;Parent=Msa1133640-mRNA-1 |
| chr7_3 | exon | 87266254 | 87266315 | 87266254 | ID=Msa1133640-mRNA-1:exon:26222;Parent=Msa1133640-mRNA-1 |
| chr7_3 | exon | 87266505 | 87266947 | 87266505 | ID=Msa1133640-mRNA-1:exon:26223;Parent=Msa1133640-mRNA-1 |
| chr7_3 | five_prime_UTR | 87261769 | 87261913 | 87261769 | ID=Msa1133640-mRNA-1:five_prime_utr;Parent=Msa1133640-mRNA-1 |
| chr7_3 | CDS | 87261914 | 87262203 | 87261914 | ID=Msa1133640-mRNA-1:cds;Parent=Msa1133640-mRNA-1 |
| chr7_3 | CDS | 87263917 | 87264143 | 87263917 | ID=Msa1133640-mRNA-1:cds;Parent=Msa1133640-mRNA-1 |
| chr7_3 | CDS | 87264626 | 87264761 | 87264626 | ID=Msa1133640-mRNA-1:cds;Parent=Msa1133640-mRNA-1 |
| chr7_3 | CDS | 87266254 | 87266315 | 87266254 | ID=Msa1133640-mRNA-1:cds;Parent=Msa1133640-mRNA-1 |
| chr7_3 | CDS | 87266505 | 87266542 | 87266505 | ID=Msa1133640-mRNA-1:cds;Parent=Msa1133640-mRNA-1 |
| chr7_3 | three_prime_UTR | 87266543 | 87266947 | 87266543 | ID=Msa1133640-mRNA-1:three_prime_utr;Parent=Msa1133640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
