AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1375040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375040 MtrunA17_Chr2g0276841 97.866 703 11 2 1 702 1 700 0.0 1447
Msa1375040 MtrunA17_Chr2g0294841 57.871 667 258 5 41 697 22 675 0.0 808
Msa1375040 MtrunA17_Chr1g0198761 46.308 650 327 7 57 687 21 667 0.0 610
Msa1375040 MtrunA17_Chr2g0290391 43.109 624 335 5 72 683 51 666 0.0 535
Msa1375040 MtrunA17_Chr5g0431001 49.087 438 218 2 59 491 48 485 1.70e-154 457
Msa1375040 MtrunA17_Chr5g0448761 29.338 634 417 14 72 683 60 684 7.04e-79 268
Msa1375040 MtrunA17_Chr2g0329031 27.014 633 425 16 78 701 20 624 6.29e-74 253
Msa1375040 MtrunA17_Chr1g0202341 28.169 568 385 10 72 628 51 606 4.52e-71 244
Msa1375040 MtrunA17_Chr1g0207551 29.373 606 363 15 72 649 34 602 6.93e-71 246
Msa1375040 MtrunA17_Chr5g0440451 29.310 580 362 12 72 626 43 599 3.76e-66 235
Msa1375040 MtrunA17_Chr3g0082121 28.042 567 380 13 70 628 41 587 8.60e-63 222
Msa1375040 MtrunA17_Chr2g0296781 28.152 579 360 20 78 628 3 553 3.02e-62 221
Msa1375040 MtrunA17_Chr3g0080351 26.332 638 405 17 72 685 76 672 2.29e-61 220
Msa1375040 MtrunA17_Chr2g0287651 26.655 574 373 15 78 628 81 629 1.03e-59 216
Msa1375040 MtrunA17_Chr5g0441581 27.700 574 373 14 72 628 32 580 4.50e-59 211
Msa1375040 MtrunA17_Chr8g0363841 25.424 649 427 14 73 685 18 645 1.11e-58 210
Msa1375040 MtrunA17_Chr6g0458391 27.130 575 380 12 64 628 217 762 4.42e-57 207
Msa1375040 MtrunA17_Chr6g0458391 34.400 125 76 3 72 196 91 209 3.19e-13 73.2
Msa1375040 MtrunA17_Chr6g0477261 30.303 462 270 15 198 628 2 442 3.11e-56 203
Msa1375040 MtrunA17_Chr1g0203051 25.490 561 374 14 78 618 85 621 7.64e-56 201
Msa1375040 MtrunA17_Chr2g0287061 26.270 571 352 14 72 628 183 698 2.52e-55 202
Msa1375040 MtrunA17_Chr2g0324011 25.694 576 389 13 72 628 10 565 3.78e-52 190
Msa1375040 MtrunA17_Chr2g0291581 26.218 595 388 15 72 643 71 637 3.15e-51 189
Msa1375040 MtrunA17_Chr3g0118611 30.075 399 254 5 234 626 117 496 1.18e-50 189
Msa1375040 MtrunA17_Chr1g0203721 23.917 623 427 15 74 670 65 666 7.27e-49 184
Msa1375040 MtrunA17_Chr5g0448511 29.058 382 261 4 251 626 15 392 3.20e-48 178
Msa1375040 MtrunA17_Chr1g0196541 24.458 646 432 17 78 699 3 616 1.07e-47 180
Msa1375040 MtrunA17_Chr2g0291591 23.592 568 384 13 41 580 22 567 1.33e-39 154
Msa1375040 MtrunA17_Chr1g0164591 27.864 323 214 8 152 470 1 308 5.91e-34 132
Msa1375040 MtrunA17_Chr3g0081281 49.462 93 47 0 215 307 1 93 8.80e-28 107
Msa1375040 MtrunA17_Chr7g0258861 28.082 292 199 6 72 359 10 294 1.69e-25 107
Msa1375040 MtrunA17_Chr2g0308841 25.455 220 150 4 424 633 14 229 3.35e-13 70.5
Msa1375040 MtrunA17_Chr7g0233911 35.659 129 70 6 72 198 34 151 1.03e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375040 AT1G10240.2 75.398 691 148 3 8 698 6 674 0.0 1118
Msa1375040 AT1G10240.1 75.398 691 148 3 8 698 6 674 0.0 1118
Msa1375040 AT5G28530.1 42.072 637 352 6 60 684 43 674 5.99e-175 516
Msa1375040 AT5G28530.3 42.072 637 348 6 60 684 43 670 1.25e-174 515
Msa1375040 AT5G28530.2 42.072 637 348 6 60 684 43 670 1.25e-174 515
Msa1375040 AT5G28530.4 38.596 627 325 8 60 684 43 611 7.86e-142 429
Msa1375040 AT5G28530.5 38.596 627 321 8 60 684 43 607 1.72e-141 428
Msa1375040 AT4G38180.1 29.750 679 440 13 15 673 22 683 2.08e-83 280
Msa1375040 AT4G15090.1 29.194 620 402 14 72 672 51 652 2.91e-75 259
Msa1375040 AT4G15090.5 29.194 620 402 14 72 672 51 652 2.91e-75 259
Msa1375040 AT4G15090.3 29.194 620 402 14 72 672 51 652 2.91e-75 259
Msa1375040 AT4G15090.2 29.194 620 402 14 72 672 51 652 2.91e-75 259
Msa1375040 AT4G15090.4 29.194 620 402 14 72 672 51 652 2.91e-75 259
Msa1375040 AT1G76320.3 27.288 612 401 14 78 672 3 587 1.81e-60 215
Msa1375040 AT1G76320.2 26.829 615 400 14 78 672 3 587 4.02e-60 216
Msa1375040 AT1G76320.1 26.829 615 400 14 78 672 3 587 4.99e-60 215
Msa1375040 AT1G76320.4 26.829 615 400 14 78 672 3 587 4.99e-60 215
Msa1375040 AT3G22170.2 24.611 642 392 19 72 672 70 660 1.91e-56 207
Msa1375040 AT3G22170.1 24.611 642 392 19 72 672 70 660 1.91e-56 207
Msa1375040 AT2G27110.2 25.984 635 396 18 72 685 49 630 2.15e-53 198
Msa1375040 AT2G27110.1 25.984 635 396 18 72 685 49 630 2.15e-53 198
Msa1375040 AT3G06250.2 26.690 577 338 16 72 628 190 701 4.75e-52 193
Msa1375040 AT3G06250.1 26.690 577 338 16 72 628 190 701 4.75e-52 193
Msa1375040 AT3G06250.3 26.690 577 338 16 72 628 190 701 4.75e-52 193
Msa1375040 AT1G52520.1 26.361 588 365 18 72 628 85 635 2.54e-50 187
Msa1375040 AT5G18960.2 26.923 572 346 17 72 628 211 725 2.96e-50 188
Msa1375040 AT5G18960.1 26.923 572 346 17 72 628 211 725 2.96e-50 188
Msa1375040 AT4G19990.3 26.123 601 358 15 75 643 24 570 5.35e-48 181
Msa1375040 AT4G19990.4 26.123 601 358 15 75 643 24 570 5.35e-48 181
Msa1375040 AT4G19990.5 26.123 601 358 15 75 643 24 570 5.94e-48 181
Msa1375040 AT4G19990.7 26.123 601 358 15 75 643 38 584 6.31e-48 181
Msa1375040 AT4G19990.6 26.123 601 358 15 75 643 24 570 9.83e-48 181
Msa1375040 AT4G19990.2 26.123 601 358 15 75 643 24 570 9.83e-48 181
Msa1375040 AT2G27110.3 27.802 464 295 11 234 685 50 485 1.07e-46 177
Msa1375040 AT1G80010.1 26.858 592 370 17 72 628 95 658 4.35e-45 172
Msa1375040 AT4G19990.1 25.906 552 334 13 119 643 10 513 9.57e-43 165
Msa1375040 AT4G38170.1 27.034 381 266 5 255 628 21 396 9.79e-43 163
Msa1375040 AT2G32250.5 22.085 566 373 14 75 628 41 550 3.62e-41 161
Msa1375040 AT2G32250.6 22.085 566 373 14 75 628 41 550 4.02e-41 161
Msa1375040 AT2G32250.1 22.085 566 373 14 75 628 41 550 4.02e-41 161
Msa1375040 AT2G32250.3 22.085 566 373 14 75 628 41 550 4.02e-41 161
Msa1375040 AT2G32250.2 22.085 566 373 14 75 628 41 550 4.21e-41 161
Msa1375040 AT2G32250.4 22.085 566 373 14 75 628 41 550 4.21e-41 161
Msa1375040 AT2G32250.8 22.025 563 371 14 78 628 3 509 8.93e-41 160
Msa1375040 AT2G32250.7 22.025 563 371 14 78 628 3 509 9.80e-41 160

Find 173 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTGATTAACAACCTTTA+TGG 0.138871 tig0019619:-27988 None:intergenic
CATTCATTTGAAATTGAAAT+TGG 0.139647 tig0019619:-26593 None:intergenic
AGGGAGATGGTCTGTTCTTT+TGG 0.145904 tig0019619:+28790 Msa1375040:CDS
ATAAGCAAAACCACTGAATT+TGG 0.147239 tig0019619:+27405 Msa1375040:CDS
CCTTCTTGGTAGGCTTTCTT+AGG 0.189142 tig0019619:+28535 Msa1375040:intron
TTGACATGCCGCTGGGGATA+TGG 0.190733 tig0019619:+27883 Msa1375040:CDS
TTAGAGATGAAACCATATTT+TGG 0.193583 tig0019619:-29697 None:intergenic
GTGTACTCAAATTTAAAATT+AGG 0.227389 tig0019619:-27744 None:intergenic
TCTTGGTTCAATGCTGTTCT+AGG 0.230975 tig0019619:+28688 Msa1375040:CDS
CCACCATAATCATGAACTTT+TGG 0.234641 tig0019619:+27461 Msa1375040:CDS
GTTCCAAAAGTTCATGATTA+TGG 0.235757 tig0019619:-27464 None:intergenic
TATGGAATGCCCTGCTTCTT+TGG 0.236061 tig0019619:+27921 Msa1375040:CDS
AGTTAAGCTATTCCAAAATA+TGG 0.247042 tig0019619:+29685 Msa1375040:CDS
CTTAGTTTGGGTTGATGATT+TGG 0.272442 tig0019619:-27331 None:intergenic
CTGGCACATTGTAATGAAAT+TGG 0.282052 tig0019619:-29803 None:intergenic
ATCCTTATGTTTGCCAAAAC+AGG 0.285583 tig0019619:+27546 Msa1375040:CDS
ATGAACAGAAATCCCTGTTT+TGG 0.290771 tig0019619:-27559 None:intergenic
AAATCTAGGGTTTCTTCTTC+TGG 0.296205 tig0019619:-27687 None:intergenic
TATTTCGTTGAGGCTTAGTT+TGG 0.297452 tig0019619:-27344 None:intergenic
TGCACATTCTTAACAAATCT+AGG 0.298629 tig0019619:-27701 None:intergenic
AAACCAGTGACGCGCCATTC+TGG 0.316021 tig0019619:-27432 None:intergenic
TTGGAATAGCTTAACTCTTT+CGG 0.327991 tig0019619:-29678 None:intergenic
TAGTCATTCCCGCAAGAAAA+TGG 0.334474 tig0019619:-28885 None:intergenic
TAGCACACAGCCAAAGAAGC+AGG 0.342849 tig0019619:-27931 None:intergenic
TCATCAAATGATGAGACTTA+TGG 0.350578 tig0019619:+27578 Msa1375040:CDS
TGATCCCTCTGACCAACATT+TGG 0.356055 tig0019619:+27020 Msa1375040:CDS
AAGGAGGTCGCAGAGTTTAC+TGG 0.359371 tig0019619:+29465 Msa1375040:CDS
TGCGAAGCGAATTGATTGTT+AGG 0.370439 tig0019619:+26614 Msa1375040:five_prime_UTR
CAAAACATGCTTTCTGCATA+TGG 0.375824 tig0019619:+28644 Msa1375040:CDS
TTGGGAGGAGGAGGTGGAGG+AGG 0.380602 tig0019619:+27039 Msa1375040:CDS
TCATCAAACCACACTCCATT+TGG 0.382393 tig0019619:+27095 Msa1375040:CDS
ATATAGCTCGCGCTCACTTT+GGG 0.386287 tig0019619:+28843 Msa1375040:CDS
ATGGTGAAATTTCTTTAGAA+TGG 0.386546 tig0019619:+29989 Msa1375040:three_prime_UTR
AGAAAATGGCTTCTTAGATA+TGG 0.389745 tig0019619:-28871 None:intergenic
GGAAGGAATCGAACTTGGTT+TGG 0.392049 tig0019619:-27486 None:intergenic
TATATAGCTCGCGCTCACTT+TGG 0.393538 tig0019619:+28842 Msa1375040:CDS
CGTAGCAGCGTGCGATTCCA+TGG 0.396995 tig0019619:-29330 None:intergenic
ATCTTCCAGATGTGGTTGTC+AGG 0.399237 tig0019619:+27371 Msa1375040:CDS
GCTTGCTCACTTTGTTGAAC+AGG 0.402511 tig0019619:+28969 Msa1375040:CDS
CTTGCGGGAATGACTACAAC+TGG 0.403842 tig0019619:+28892 Msa1375040:CDS
CACCGAAGATATCATACAAT+TGG 0.404756 tig0019619:-27821 None:intergenic
GTCTAAAGAACGATTAGATA+TGG 0.411264 tig0019619:+29736 Msa1375040:CDS
TAAGCAAAACCACTGAATTT+GGG 0.413718 tig0019619:+27406 Msa1375040:CDS
GATCCCTCTGACCAACATTT+GGG 0.420366 tig0019619:+27021 Msa1375040:CDS
AATAGAGAAGCCGCAGGTCT+TGG 0.423335 tig0019619:-27220 None:intergenic
CCTCCAGAATGGCGCGTCAC+TGG 0.424652 tig0019619:+27429 Msa1375040:CDS
TGGGTTGGGATAAATAATTA+TGG 0.425124 tig0019619:+27903 Msa1375040:CDS
CAACATTTGGGAGGAGGAGG+TGG 0.430387 tig0019619:+27033 Msa1375040:CDS
CACTGCATTTGACATGCCGC+TGG 0.431194 tig0019619:+27875 Msa1375040:CDS
ATAAGCCTGACAACCACATC+TGG 0.432847 tig0019619:-27376 None:intergenic
CTGTTGTGTACAAAATGTAT+AGG 0.435140 tig0019619:+30044 Msa1375040:three_prime_UTR
CTTGAGAAGTGCGTCGAACC+TGG 0.435619 tig0019619:+27603 Msa1375040:CDS
CAATGTGTGGTTCGATGAAC+AGG 0.438367 tig0019619:+29866 Msa1375040:three_prime_UTR
CCAGAGATACTTCTACCATT+AGG 0.440893 tig0019619:+29822 Msa1375040:CDS
TCTCTGAGAGTTCTTTCAAC+AGG 0.443737 tig0019619:+29557 Msa1375040:CDS
CCTAATGGTAGAAGTATCTC+TGG 0.445108 tig0019619:-29822 None:intergenic
GGAATCTATGATGACTGAAC+TGG 0.447437 tig0019619:+29843 Msa1375040:exon
ATTTCGTTGAGGCTTAGTTT+GGG 0.449059 tig0019619:-27343 None:intergenic
CGGATGGGAAGATATGCATC+TGG 0.452008 tig0019619:-29596 None:intergenic
CAAAATGTTAGCCTCAAAAC+AGG 0.452685 tig0019619:+29302 Msa1375040:CDS
TGCCGCTGGGGATATGGGTT+GGG 0.453477 tig0019619:+27889 Msa1375040:CDS
TGACATGCCGCTGGGGATAT+GGG 0.454706 tig0019619:+27884 Msa1375040:CDS
TAGGTGAACGCTACAATGAC+TGG 0.457850 tig0019619:+28707 Msa1375040:CDS
GTTTGGGTTGATGATTTGGC+AGG 0.459466 tig0019619:-27327 None:intergenic
TAAACGGTTGTTTGCATCAA+GGG 0.461284 tig0019619:-27766 None:intergenic
TTGTTGTTGGGTCCACCAAA+TGG 0.463735 tig0019619:-27110 None:intergenic
TACTTTGTTTGTCACCGTGC+TGG 0.469337 tig0019619:+27297 Msa1375040:CDS
TAAATTAACAATGTGTCGAT+TGG 0.471898 tig0019619:-28821 None:intergenic
CATTTGGGAGGAGGAGGTGG+AGG 0.472758 tig0019619:+27036 Msa1375040:CDS
TCAGTAAAAGGCAAATATCC+AGG 0.474275 tig0019619:-27621 None:intergenic
AAGAATGTGCAGAAATAGTA+AGG 0.475772 tig0019619:+27713 Msa1375040:CDS
ATCCAATTGTATGATATCTT+CGG 0.477575 tig0019619:+27819 Msa1375040:CDS
GGAAACATTTGACCGATGTA+TGG 0.479605 tig0019619:-27159 None:intergenic
CATGGAATCGCACGCTGCTA+CGG 0.484767 tig0019619:+29331 Msa1375040:CDS
TTGACGACTTTGAACTAGGC+TGG 0.486705 tig0019619:+28767 Msa1375040:CDS
TGAAGCTTCGAAAAGGCAAA+AGG 0.488243 tig0019619:-29362 None:intergenic
GCACATTCTTAACAAATCTA+GGG 0.488962 tig0019619:-27700 None:intergenic
AAATTCCAGAAAATTCAAAC+TGG 0.489969 tig0019619:-29523 None:intergenic
CAGTCATCATAGATTCCTAA+TGG 0.491526 tig0019619:-29837 None:intergenic
ACTCTTTCGGCATGATCGCT+AGG 0.495476 tig0019619:-29665 None:intergenic
CTGAATTTGGGCCTCCAGAA+TGG 0.496915 tig0019619:+27418 Msa1375040:CDS
ATCTAATCGTTCTTTAGACT+TGG 0.498595 tig0019619:-29732 None:intergenic
TCAGTTGACGACTTTGAACT+AGG 0.498779 tig0019619:+28763 Msa1375040:CDS
ACTGCATTTGACATGCCGCT+GGG 0.500632 tig0019619:+27876 Msa1375040:CDS
ATGCAGGAAGGAATCGAACT+TGG 0.504851 tig0019619:-27491 None:intergenic
ATTAACAACCTTTATGGCCC+AGG 0.508147 tig0019619:-27982 None:intergenic
CACCTCCTCCTCCCAAATGT+TGG 0.508316 tig0019619:-27032 None:intergenic
GCTTCAAGAACAACTTGTGT+TGG 0.510259 tig0019619:+29379 Msa1375040:CDS
TTGTGAGAAAGTATGACAAT+TGG 0.510937 tig0019619:+29905 Msa1375040:three_prime_UTR
ATGCCGCTGGGGATATGGGT+TGG 0.515095 tig0019619:+27888 Msa1375040:CDS
TTGTTCTTGAAGCTTCGAAA+AGG 0.515435 tig0019619:-29369 None:intergenic
GCGAAGCGAATTGATTGTTA+GGG 0.515636 tig0019619:+26615 Msa1375040:five_prime_UTR
GACTTTAGAGAGAGGAAACA+TGG 0.522539 tig0019619:+26557 Msa1375040:five_prime_UTR
TAGTAGCAAAGTTTCCGTCT+TGG 0.523045 tig0019619:+28671 Msa1375040:CDS
ACCGTTTAGAAAATATTGCC+TGG 0.526747 tig0019619:+27781 Msa1375040:CDS
TCAAACCACACTCCATTTGG+TGG 0.527504 tig0019619:+27098 Msa1375040:CDS
GAGTAAGATAATGTCTGAAG+AGG 0.527986 tig0019619:+26936 Msa1375040:exon
GTAGCAGCGTGCGATTCCAT+GGG 0.533610 tig0019619:-29329 None:intergenic
CAATTAACGCCTTCATTCAA+CGG 0.534336 tig0019619:+28926 Msa1375040:CDS
CTAAACGGTTGTTTGCATCA+AGG 0.535769 tig0019619:-27767 None:intergenic
TGGAGTGTGGTTTGATGAGA+AGG 0.539574 tig0019619:-27090 None:intergenic
GACCAACATTTGGGAGGAGG+AGG 0.539845 tig0019619:+27030 Msa1375040:CDS
ACTGATACGACGCCATCGGA+TGG 0.541479 tig0019619:-29612 None:intergenic
CTGATACGACGCCATCGGAT+GGG 0.543366 tig0019619:-29611 None:intergenic
TCTGATATAGTTCTGTATGC+AGG 0.547078 tig0019619:-27507 None:intergenic
TACTGCAAGATGAAACTGTC+CGG 0.547112 tig0019619:+27952 Msa1375040:CDS
TGATCAGTTAATATAGTCTG+TGG 0.550040 tig0019619:-28577 None:intergenic
TCCTTATGTTTGCCAAAACA+GGG 0.551056 tig0019619:+27547 Msa1375040:CDS
CCTCCCAAATGTTGGTCAGA+GGG 0.557531 tig0019619:-27024 None:intergenic
GAGACAGAAGAATGGAAACT+TGG 0.557670 tig0019619:-29766 None:intergenic
CAACGCTCCTTCCTCAAGGT+GGG 0.557799 tig0019619:+29945 Msa1375040:three_prime_UTR
TGAACTAGGCTGGAGGGAGA+TGG 0.559599 tig0019619:+28777 Msa1375040:CDS
TATGTAGAGAGGAAAGTGAC+TGG 0.562906 tig0019619:-26641 None:intergenic
ATCATACAATTGGATGGATG+AGG 0.563319 tig0019619:-27811 None:intergenic
TATTTGCATTCTATCAGCCA+TGG 0.563497 tig0019619:+30105 Msa1375040:three_prime_UTR
CAGCTTATAATTCCTTCATG+AGG 0.566205 tig0019619:-29491 None:intergenic
AGACATCACACAAAAGTTGA+AGG 0.566338 tig0019619:+29446 Msa1375040:CDS
TGGCAGGAGTGTTGCCAGCA+CGG 0.567905 tig0019619:-27311 None:intergenic
CCAAAAGTTCATGATTATGG+TGG 0.568510 tig0019619:-27461 None:intergenic
GAAGATATCATACAATTGGA+TGG 0.569457 tig0019619:-27817 None:intergenic
AACGCTCCTTCCTCAAGGTG+GGG 0.573030 tig0019619:+29946 Msa1375040:three_prime_UTR
AGCTTATAATTCCTTCATGA+GGG 0.573229 tig0019619:-29490 None:intergenic
TTCTGGAGGCCCAAATTCAG+TGG 0.573388 tig0019619:-27415 None:intergenic
TCTTATGCGAGACAGAAGAA+TGG 0.582203 tig0019619:-29774 None:intergenic
CGACTTTGAACTAGGCTGGA+GGG 0.582819 tig0019619:+28771 Msa1375040:CDS
AATAGAAAATCTTCCAGATG+TGG 0.584217 tig0019619:+27363 Msa1375040:CDS
GGAAAAGACGGTGTTGGCAA+AGG 0.584524 tig0019619:+27261 Msa1375040:CDS
TCCTCCCAAATGTTGGTCAG+AGG 0.584559 tig0019619:-27025 None:intergenic
ACTTAGAAACCGTTGAATGA+AGG 0.586482 tig0019619:-28935 None:intergenic
TCAACGCTCCTTCCTCAAGG+TGG 0.586724 tig0019619:+29944 Msa1375040:three_prime_UTR
GATAGAATGCAAATAATACA+TGG 0.587982 tig0019619:-30097 None:intergenic
TCTGACCAACATTTGGGAGG+AGG 0.587992 tig0019619:+27027 Msa1375040:CDS
AAGTTCATGATTATGGTGGT+TGG 0.589394 tig0019619:-27457 None:intergenic
ATGCATATCTTCCCATCCGA+TGG 0.597365 tig0019619:+29600 Msa1375040:CDS
AGCACACAGCCAAAGAAGCA+GGG 0.598142 tig0019619:-27930 None:intergenic
GTTTACTGGTCCCCTCATGA+AGG 0.604499 tig0019619:+29479 Msa1375040:CDS
GATGGATGAGGCATACGACC+AGG 0.609900 tig0019619:-27799 None:intergenic
ACGACGCCCCACCTTGAGGA+AGG 0.611875 tig0019619:-29952 None:intergenic
CCAGTGACGCGCCATTCTGG+AGG 0.616513 tig0019619:-27429 None:intergenic
ATATCAACGCTCCTTCCTCA+AGG 0.616758 tig0019619:+29941 Msa1375040:three_prime_UTR
TGATATCTTCGGTGATGCTG+TGG 0.618259 tig0019619:+27830 Msa1375040:CDS
ACCGAAGGAAAAGACGGTGT+TGG 0.619616 tig0019619:+27255 Msa1375040:CDS
TGGGTCCACCAAATGGAGTG+TGG 0.620546 tig0019619:-27103 None:intergenic
GCACACTGATACGACGCCAT+CGG 0.621865 tig0019619:-29616 None:intergenic
TTATGGCCCAGGAAAATGAC+CGG 0.623189 tig0019619:-27971 None:intergenic
GGTAGCAGGTGGATCCATGT+TGG 0.624526 tig0019619:+26957 Msa1375040:CDS
CTGCATTTGACATGCCGCTG+GGG 0.625737 tig0019619:+27877 Msa1375040:CDS
GGATGGGAAGATATGCATCT+GGG 0.625859 tig0019619:-29595 None:intergenic
ATTAGACGTCATCGTACCGA+AGG 0.626176 tig0019619:+27240 Msa1375040:CDS
TCATAAGCAGCATCGTGAGT+GGG 0.627606 tig0019619:-27180 None:intergenic
GGTTTCTAAGTGCACAGACA+CGG 0.627911 tig0019619:+28947 Msa1375040:CDS
TGAAACGACGCCCCACCTTG+AGG 0.628280 tig0019619:-29956 None:intergenic
ATAATGTCTGAAGAGGTAGC+AGG 0.630355 tig0019619:+26943 Msa1375040:exon
GAAAATGTATGTATGTAGAG+AGG 0.633979 tig0019619:-26652 None:intergenic
GTCATAAGCAGCATCGTGAG+TGG 0.636238 tig0019619:-27181 None:intergenic
TCGAAAAGGCAAAAGGAGTG+AGG 0.641424 tig0019619:-29355 None:intergenic
GCTTATAATTCCTTCATGAG+GGG 0.641658 tig0019619:-29489 None:intergenic
CCCTCTGACCAACATTTGGG+AGG 0.646262 tig0019619:+27024 Msa1375040:CDS
ACGTCTAATAGAGAAGCCGC+AGG 0.646866 tig0019619:-27226 None:intergenic
ACGACTTTGAACTAGGCTGG+AGG 0.648729 tig0019619:+28770 Msa1375040:CDS
TAGCAGCGTGCGATTCCATG+GGG 0.649314 tig0019619:-29328 None:intergenic
ATGTCTGAAGAGGTAGCAGG+TGG 0.649630 tig0019619:+26946 Msa1375040:CDS
TGAACGCTACAATGACTGGA+AGG 0.649833 tig0019619:+28711 Msa1375040:CDS
ATATAGTTCTGTATGCAGGA+AGG 0.660408 tig0019619:-27503 None:intergenic
AGAACAGCATTGAACCAAGA+CGG 0.662125 tig0019619:-28685 None:intergenic
CATCATCACATTCCATACAT+CGG 0.667453 tig0019619:+27147 Msa1375040:CDS
CATCGTACCGAAGGAAAAGA+CGG 0.676411 tig0019619:+27249 Msa1375040:CDS
GTCATCATAAACTACCAACA+TGG 0.680695 tig0019619:-26971 None:intergenic
ATCCCAACCCATATCCCCAG+CGG 0.701870 tig0019619:-27891 None:intergenic
ATGACTGAACTGGCAATGTG+TGG 0.712539 tig0019619:+29853 Msa1375040:exon
CATCACACAAAAGTTGAAGG+AGG 0.714854 tig0019619:+29449 Msa1375040:CDS
TGTGTGGTTCGATGAACAGG+TGG 0.731352 tig0019619:+29869 Msa1375040:three_prime_UTR
AGCAGCGTGCGATTCCATGG+GGG 0.736419 tig0019619:-29327 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTCCAATTTTATAAAA+TGG + tig0019619:28257-28276 Msa1375040:intron 10.0%
!!! TTTATTCCAATTTTATAAAA+TGG + tig0019619:28257-28276 Msa1375040:intron 10.0%
!! AAAAAGAAAAGAAAAGAAAA+CGG + tig0019619:26525-26544 Msa1375040:five_prime_UTR 15.0%
!! AAATTGGAATAAAAAGAAAT+GGG - tig0019619:28250-28269 None:intergenic 15.0%
!! AAAATTGGAATAAAAAGAAA+TGG - tig0019619:28251-28270 None:intergenic 15.0%
!! AAATTGGAATAAAAAGAAAT+GGG - tig0019619:28250-28269 None:intergenic 15.0%
!! AAAATTGGAATAAAAAGAAA+TGG - tig0019619:28251-28270 None:intergenic 15.0%
!!! ATGTTTTGATTTTTTTACAT+TGG + tig0019619:29013-29032 Msa1375040:intron 15.0%
!!! CATTCATTTGAAATTGAAAT+TGG - tig0019619:26596-26615 None:intergenic 20.0%
!! ATAATGAATGAATTGGAAAA+AGG - tig0019619:26708-26727 None:intergenic 20.0%
!! TTAAGCAATAATGAATGAAT+TGG - tig0019619:26715-26734 None:intergenic 20.0%
!!! TAGTAGAATTATACTTGTTT+TGG + tig0019619:26856-26875 Msa1375040:intron 20.0%
!!! GTGTACTCAAATTTAAAATT+AGG - tig0019619:27747-27766 None:intergenic 20.0%
!!! TTATTGATTAACAACCTTTA+TGG - tig0019619:27991-28010 None:intergenic 20.0%
!!! ATTCTTTTCTGAAATAATAC+TGG + tig0019619:28067-28086 Msa1375040:intron 20.0%
!! TCTCTACATACATACATTTT+CGG + tig0019619:26654-26673 Msa1375040:five_prime_UTR 25.0%
!! ATATTTGCCTTTTACTGAAA+AGG + tig0019619:27626-27645 Msa1375040:CDS 25.0%
!! GATCTAATTTTCTAAATGAC+TGG - tig0019619:27668-27687 None:intergenic 25.0%
! ATCCAATTGTATGATATCTT+CGG + tig0019619:27819-27838 Msa1375040:CDS 25.0%
! TTATTAGCGTCTATATCATT+TGG + tig0019619:28012-28031 Msa1375040:intron 25.0%
!!! TTTTGATTCAAATTGTGTTG+TGG + tig0019619:28036-28055 Msa1375040:intron 25.0%
! TATTTCAGAAAAGAATCCAA+GGG - tig0019619:28063-28082 None:intergenic 25.0%
! TTATTTCAGAAAAGAATCCA+AGG - tig0019619:28064-28083 None:intergenic 25.0%
! AAAAAAAACAAACTAGCACA+AGG - tig0019619:28227-28246 None:intergenic 25.0%
!! CCTTCACCATTTTATAAAAT+TGG - tig0019619:28266-28285 None:intergenic 25.0%
!! CCAATTTTATAAAATGGTGA+AGG + tig0019619:28263-28282 Msa1375040:intron 25.0%
! AATTTATGAACATTCCACAA+GGG - tig0019619:28331-28350 None:intergenic 25.0%
! AAATTTATGAACATTCCACA+AGG - tig0019619:28332-28351 None:intergenic 25.0%
!! CCTTCACCATTTTATAAAAT+TGG - tig0019619:28266-28285 None:intergenic 25.0%
!! CCAATTTTATAAAATGGTGA+AGG + tig0019619:28263-28282 Msa1375040:intron 25.0%
! AATTTATGAACATTCCACAA+GGG - tig0019619:28331-28350 None:intergenic 25.0%
! AAATTTATGAACATTCCACA+AGG - tig0019619:28332-28351 None:intergenic 25.0%
!! AACCATTCTTTAATTTACAC+TGG + tig0019619:28500-28519 Msa1375040:intron 25.0%
! AACCAGTGTAAATTAAAGAA+TGG - tig0019619:28505-28524 None:intergenic 25.0%
!!! CTTTCTTAGGTTTTATGAAT+GGG + tig0019619:28548-28567 Msa1375040:CDS 25.0%
!! TAAATTAACAATGTGTCGAT+TGG - tig0019619:28824-28843 None:intergenic 25.0%
! ATTTAGTATCTCCAAAAAGT+AGG - tig0019619:29179-29198 None:intergenic 25.0%
!!! GTTGATTTTAAAGATCAAAC+TGG + tig0019619:29251-29270 Msa1375040:CDS 25.0%
! AAATTCCAGAAAATTCAAAC+TGG - tig0019619:29526-29545 None:intergenic 25.0%
!!! AATTTTCTGGAATTTTGTGT+AGG + tig0019619:29531-29550 Msa1375040:CDS 25.0%
!!! TTTTGAAGAATCTTAGAAGA+AGG - tig0019619:29641-29660 None:intergenic 25.0%
! AGTTAAGCTATTCCAAAATA+TGG + tig0019619:29685-29704 Msa1375040:CDS 25.0%
!! TTAGAGATGAAACCATATTT+TGG - tig0019619:29700-29719 None:intergenic 25.0%
!! GTCGTTTCAAATTATTTTCA+TGG + tig0019619:29970-29989 Msa1375040:three_prime_UTR 25.0%
!! ATGGTGAAATTTCTTTAGAA+TGG + tig0019619:29989-30008 Msa1375040:three_prime_UTR 25.0%
! GATAGAATGCAAATAATACA+TGG - tig0019619:30100-30119 None:intergenic 25.0%
GAAAATGTATGTATGTAGAG+AGG - tig0019619:26655-26674 None:intergenic 30.0%
ACTACTACTACTACTACATA+CGG - tig0019619:26819-26838 None:intergenic 30.0%
! TTGTTGTTGTTGTTGTTGTT+GGG - tig0019619:27125-27144 None:intergenic 30.0%
! GAAGATTTTCTATTTCGTTG+AGG - tig0019619:27357-27376 None:intergenic 30.0%
AATAGAAAATCTTCCAGATG+TGG + tig0019619:27363-27382 Msa1375040:CDS 30.0%
ATAAGCAAAACCACTGAATT+TGG + tig0019619:27405-27424 Msa1375040:CDS 30.0%
TAAGCAAAACCACTGAATTT+GGG + tig0019619:27406-27425 Msa1375040:CDS 30.0%
GTTCCAAAAGTTCATGATTA+TGG - tig0019619:27467-27486 None:intergenic 30.0%
TATCAGATGCTGACAAAAAT+CGG + tig0019619:27523-27542 Msa1375040:CDS 30.0%
TCATCAAATGATGAGACTTA+TGG + tig0019619:27578-27597 Msa1375040:CDS 30.0%
GCACATTCTTAACAAATCTA+GGG - tig0019619:27703-27722 None:intergenic 30.0%
TGCACATTCTTAACAAATCT+AGG - tig0019619:27704-27723 None:intergenic 30.0%
AAGAATGTGCAGAAATAGTA+AGG + tig0019619:27713-27732 Msa1375040:CDS 30.0%
! ACCAGGCAATATTTTCTAAA+CGG - tig0019619:27785-27804 None:intergenic 30.0%
GAAGATATCATACAATTGGA+TGG - tig0019619:27820-27839 None:intergenic 30.0%
! TGGGTTGGGATAAATAATTA+TGG + tig0019619:27903-27922 Msa1375040:CDS 30.0%
ATTTCAGAAAAGAATCCAAG+GGG - tig0019619:28062-28081 None:intergenic 30.0%
!! TTTCTGAAATAATACTGGTG+TGG + tig0019619:28072-28091 Msa1375040:intron 30.0%
ATAAAAAAACTGCACTGTCT+TGG + tig0019619:28142-28161 Msa1375040:intron 30.0%
GATTTGTATTAACCTCCATT+TGG - tig0019619:28173-28192 None:intergenic 30.0%
!!! CTTTTATTTTTACTCCCTTG+TGG + tig0019619:28314-28333 Msa1375040:intron 30.0%
GGAAAAAAAAAACTAGCACA+AGG - tig0019619:28366-28385 None:intergenic 30.0%
!!! CTTTTATTTTTACTCCCTTG+TGG + tig0019619:28314-28333 Msa1375040:intron 30.0%
!!! GGTTTTTTTATTCACCTTCT+TGG + tig0019619:28521-28540 Msa1375040:intron 30.0%
! TTTTTATTCACCTTCTTGGT+AGG + tig0019619:28525-28544 Msa1375040:intron 30.0%
!! GCTTTCTTAGGTTTTATGAA+TGG + tig0019619:28547-28566 Msa1375040:CDS 30.0%
TGATCAGTTAATATAGTCTG+TGG - tig0019619:28580-28599 None:intergenic 30.0%
AGAAAATGGCTTCTTAGATA+TGG - tig0019619:28874-28893 None:intergenic 30.0%
CAATGATCATTCACATTTCA+TGG + tig0019619:29041-29060 Msa1375040:intron 30.0%
!! GTGAACTTTATCCTACTTTT+TGG + tig0019619:29165-29184 Msa1375040:intron 30.0%
CCAAAATTCACAGAAAGATA+AGG - tig0019619:29202-29221 None:intergenic 30.0%
! CCTTATCTTTCTGTGAATTT+TGG + tig0019619:29199-29218 Msa1375040:intron 30.0%
AGCTTATAATTCCTTCATGA+GGG - tig0019619:29493-29512 None:intergenic 30.0%
TTGGAATAGCTTAACTCTTT+CGG - tig0019619:29681-29700 None:intergenic 30.0%
ATCTAATCGTTCTTTAGACT+TGG - tig0019619:29735-29754 None:intergenic 30.0%
GTCTAAAGAACGATTAGATA+TGG + tig0019619:29736-29755 Msa1375040:CDS 30.0%
! TTGTGAGAAAGTATGACAAT+TGG + tig0019619:29905-29924 Msa1375040:three_prime_UTR 30.0%
CTGTTGTGTACAAAATGTAT+AGG + tig0019619:30044-30063 Msa1375040:three_prime_UTR 30.0%
TGTGGTAATTAAGCAGCAAA+AGG - tig0019619:26741-26760 None:intergenic 35.0%
TCAAAGTAAATTCACGAGTG+TGG - tig0019619:26764-26783 None:intergenic 35.0%
GAGTAAGATAATGTCTGAAG+AGG + tig0019619:26936-26955 Msa1375040:exon 35.0%
GTCATCATAAACTACCAACA+TGG - tig0019619:26974-26993 None:intergenic 35.0%
! GTTGTTGTTGTTGTTGTTGT+TGG - tig0019619:27126-27145 None:intergenic 35.0%
CATCATCACATTCCATACAT+CGG + tig0019619:27147-27166 Msa1375040:CDS 35.0%
!! CTTAGTTTGGGTTGATGATT+TGG - tig0019619:27334-27353 None:intergenic 35.0%
ATTTCGTTGAGGCTTAGTTT+GGG - tig0019619:27346-27365 None:intergenic 35.0%
TATTTCGTTGAGGCTTAGTT+TGG - tig0019619:27347-27366 None:intergenic 35.0%
AAGTTCATGATTATGGTGGT+TGG - tig0019619:27460-27479 None:intergenic 35.0%
CCAAAAGTTCATGATTATGG+TGG - tig0019619:27464-27483 None:intergenic 35.0%
! CCACCATAATCATGAACTTT+TGG + tig0019619:27461-27480 Msa1375040:CDS 35.0%
! ATATAGTTCTGTATGCAGGA+AGG - tig0019619:27506-27525 None:intergenic 35.0%
! TCTGATATAGTTCTGTATGC+AGG - tig0019619:27510-27529 None:intergenic 35.0%
ATCCTTATGTTTGCCAAAAC+AGG + tig0019619:27546-27565 Msa1375040:CDS 35.0%
TCCTTATGTTTGCCAAAACA+GGG + tig0019619:27547-27566 Msa1375040:CDS 35.0%
! ATGAACAGAAATCCCTGTTT+TGG - tig0019619:27562-27581 None:intergenic 35.0%
TCAGTAAAAGGCAAATATCC+AGG - tig0019619:27624-27643 None:intergenic 35.0%
! CTTACGTCCTTTTCAGTAAA+AGG - tig0019619:27636-27655 None:intergenic 35.0%
! CTTTTACTGAAAAGGACGTA+AGG + tig0019619:27634-27653 Msa1375040:CDS 35.0%
! AAATCTAGGGTTTCTTCTTC+TGG - tig0019619:27690-27709 None:intergenic 35.0%
TAAACGGTTGTTTGCATCAA+GGG - tig0019619:27769-27788 None:intergenic 35.0%
ACCGTTTAGAAAATATTGCC+TGG + tig0019619:27781-27800 Msa1375040:CDS 35.0%
ATCATACAATTGGATGGATG+AGG - tig0019619:27814-27833 None:intergenic 35.0%
CACCGAAGATATCATACAAT+TGG - tig0019619:27824-27843 None:intergenic 35.0%
ACTGTCTTGGATATACCAAA+TGG + tig0019619:28155-28174 Msa1375040:intron 35.0%
ACAAATCAAAGCCTACACTT+TGG + tig0019619:28186-28205 Msa1375040:intron 35.0%
TGCATACATTTCCAAAGTGT+AGG - tig0019619:28200-28219 None:intergenic 35.0%
!! CTTAGGTTTTATGAATGGGA+AGG + tig0019619:28552-28571 Msa1375040:CDS 35.0%
CAAAACATGCTTTCTGCATA+TGG + tig0019619:28644-28663 Msa1375040:CDS 35.0%
!! TCTAAGAAGCCATTTTCTTG+CGG + tig0019619:28876-28895 Msa1375040:CDS 35.0%
CAATTAACGCCTTCATTCAA+CGG + tig0019619:28926-28945 Msa1375040:CDS 35.0%
ACTTAGAAACCGTTGAATGA+AGG - tig0019619:28938-28957 None:intergenic 35.0%
!!! CTGTTTTGAGGCTAACATTT+TGG - tig0019619:29304-29323 None:intergenic 35.0%
! CAAAATGTTAGCCTCAAAAC+AGG + tig0019619:29302-29321 Msa1375040:CDS 35.0%
TTGTTCTTGAAGCTTCGAAA+AGG - tig0019619:29372-29391 None:intergenic 35.0%
!!! GCATCTTTTTCAGTTGAAGA+TGG + tig0019619:29413-29432 Msa1375040:CDS 35.0%
AGACATCACACAAAAGTTGA+AGG + tig0019619:29446-29465 Msa1375040:CDS 35.0%
GCTTATAATTCCTTCATGAG+GGG - tig0019619:29492-29511 None:intergenic 35.0%
CAGCTTATAATTCCTTCATG+AGG - tig0019619:29494-29513 None:intergenic 35.0%
! TGTCACCAGTTTGAATTTTC+TGG + tig0019619:29518-29537 Msa1375040:CDS 35.0%
CTGGCACATTGTAATGAAAT+TGG - tig0019619:29806-29825 None:intergenic 35.0%
CAGTCATCATAGATTCCTAA+TGG - tig0019619:29840-29859 None:intergenic 35.0%
TATTTGCATTCTATCAGCCA+TGG + tig0019619:30105-30124 Msa1375040:three_prime_UTR 35.0%
! TCTCCTCTTTTTATTGACCA+TGG - tig0019619:30125-30144 None:intergenic 35.0%
TGGTCAATAAAAAGAGGAGA+CGG + tig0019619:30125-30144 Msa1375040:three_prime_UTR 35.0%
!! GCGTTTTAGACTTTAGAGAG+AGG + tig0019619:26549-26568 Msa1375040:five_prime_UTR 40.0%
! GACTTTAGAGAGAGGAAACA+TGG + tig0019619:26557-26576 Msa1375040:five_prime_UTR 40.0%
TGCGAAGCGAATTGATTGTT+AGG + tig0019619:26614-26633 Msa1375040:five_prime_UTR 40.0%
GCGAAGCGAATTGATTGTTA+GGG + tig0019619:26615-26634 Msa1375040:five_prime_UTR 40.0%
TATGTAGAGAGGAAAGTGAC+TGG - tig0019619:26644-26663 None:intergenic 40.0%
ATAATGTCTGAAGAGGTAGC+AGG + tig0019619:26943-26962 Msa1375040:exon 40.0%
TCATCAAACCACACTCCATT+TGG + tig0019619:27095-27114 Msa1375040:CDS 40.0%
GGAAACATTTGACCGATGTA+TGG - tig0019619:27162-27181 None:intergenic 40.0%
!!! TCCCTGTTTTGGCAAACATA+AGG - tig0019619:27551-27570 None:intergenic 40.0%
CTAAACGGTTGTTTGCATCA+AGG - tig0019619:27770-27789 None:intergenic 40.0%
TACTGCAAGATGAAACTGTC+CGG + tig0019619:27952-27971 Msa1375040:CDS 40.0%
ATTAACAACCTTTATGGCCC+AGG - tig0019619:27985-28004 None:intergenic 40.0%
GTCTTGGATATACCAAATGG+AGG + tig0019619:28158-28177 Msa1375040:intron 40.0%
TAGTAGCAAAGTTTCCGTCT+TGG + tig0019619:28671-28690 Msa1375040:CDS 40.0%
! AGAACAGCATTGAACCAAGA+CGG - tig0019619:28688-28707 None:intergenic 40.0%
TCTTGGTTCAATGCTGTTCT+AGG + tig0019619:28688-28707 Msa1375040:CDS 40.0%
TCAGTTGACGACTTTGAACT+AGG + tig0019619:28763-28782 Msa1375040:CDS 40.0%
!! CTAAGAAGCCATTTTCTTGC+GGG + tig0019619:28877-28896 Msa1375040:CDS 40.0%
TAGTCATTCCCGCAAGAAAA+TGG - tig0019619:28888-28907 None:intergenic 40.0%
!! ATTTTGGAGATTCTGCTGCA+TGG - tig0019619:29288-29307 None:intergenic 40.0%
TGAAGCTTCGAAAAGGCAAA+AGG - tig0019619:29365-29384 None:intergenic 40.0%
GCTTCAAGAACAACTTGTGT+TGG + tig0019619:29379-29398 Msa1375040:CDS 40.0%
CATCACACAAAAGTTGAAGG+AGG + tig0019619:29449-29468 Msa1375040:CDS 40.0%
! TCTCTGAGAGTTCTTTCAAC+AGG + tig0019619:29557-29576 Msa1375040:CDS 40.0%
GAGACAGAAGAATGGAAACT+TGG - tig0019619:29769-29788 None:intergenic 40.0%
TCTTATGCGAGACAGAAGAA+TGG - tig0019619:29777-29796 None:intergenic 40.0%
!! CCTAATGGTAGAAGTATCTC+TGG - tig0019619:29825-29844 None:intergenic 40.0%
CCAGAGATACTTCTACCATT+AGG + tig0019619:29822-29841 Msa1375040:CDS 40.0%
GGAATCTATGATGACTGAAC+TGG + tig0019619:29843-29862 Msa1375040:exon 40.0%
CAGCCATGGTCAATAAAAAG+AGG + tig0019619:30119-30138 Msa1375040:three_prime_UTR 40.0%
CAATAAAAAGAGGAGACGGT+TGG + tig0019619:30129-30148 Msa1375040:three_prime_UTR 40.0%
GTAAATTCACGAGTGTGGTG+TGG - tig0019619:26759-26778 None:intergenic 45.0%
TGATCCCTCTGACCAACATT+TGG + tig0019619:27020-27039 Msa1375040:CDS 45.0%
GATCCCTCTGACCAACATTT+GGG + tig0019619:27021-27040 Msa1375040:CDS 45.0%
TGGAGTGTGGTTTGATGAGA+AGG - tig0019619:27093-27112 None:intergenic 45.0%
TCAAACCACACTCCATTTGG+TGG + tig0019619:27098-27117 Msa1375040:CDS 45.0%
! TTGTTGTTGGGTCCACCAAA+TGG - tig0019619:27113-27132 None:intergenic 45.0%
TCATAAGCAGCATCGTGAGT+GGG - tig0019619:27183-27202 None:intergenic 45.0%
! ACTCATTTTGCCAAGACCTG+CGG + tig0019619:27210-27229 Msa1375040:CDS 45.0%
ATTAGACGTCATCGTACCGA+AGG + tig0019619:27240-27259 Msa1375040:CDS 45.0%
CATCGTACCGAAGGAAAAGA+CGG + tig0019619:27249-27268 Msa1375040:CDS 45.0%
! TACTTTGTTTGTCACCGTGC+TGG + tig0019619:27297-27316 Msa1375040:CDS 45.0%
!! GTTTGGGTTGATGATTTGGC+AGG - tig0019619:27330-27349 None:intergenic 45.0%
ATCTTCCAGATGTGGTTGTC+AGG + tig0019619:27371-27390 Msa1375040:CDS 45.0%
ATAAGCCTGACAACCACATC+TGG - tig0019619:27379-27398 None:intergenic 45.0%
GGAAGGAATCGAACTTGGTT+TGG - tig0019619:27489-27508 None:intergenic 45.0%
ATGCAGGAAGGAATCGAACT+TGG - tig0019619:27494-27513 None:intergenic 45.0%
TGATATCTTCGGTGATGCTG+TGG + tig0019619:27830-27849 Msa1375040:CDS 45.0%
TATGGAATGCCCTGCTTCTT+TGG + tig0019619:27921-27940 Msa1375040:CDS 45.0%
!! AAACTGTCCGGTCATTTTCC+TGG + tig0019619:27964-27983 Msa1375040:CDS 45.0%
!! AACTGTCCGGTCATTTTCCT+GGG + tig0019619:27965-27984 Msa1375040:CDS 45.0%
TTATGGCCCAGGAAAATGAC+CGG - tig0019619:27974-27993 None:intergenic 45.0%
!! GTCATTTTCCTGGGCCATAA+AGG + tig0019619:27974-27993 Msa1375040:CDS 45.0%
CCTAAGAAAGCCTACCAAGA+AGG - tig0019619:28538-28557 None:intergenic 45.0%
CCTTCTTGGTAGGCTTTCTT+AGG + tig0019619:28535-28554 Msa1375040:intron 45.0%
TAGGTGAACGCTACAATGAC+TGG + tig0019619:28707-28726 Msa1375040:CDS 45.0%
TGAACGCTACAATGACTGGA+AGG + tig0019619:28711-28730 Msa1375040:CDS 45.0%
TTGACGACTTTGAACTAGGC+TGG + tig0019619:28767-28786 Msa1375040:CDS 45.0%
! AGGGAGATGGTCTGTTCTTT+TGG + tig0019619:28790-28809 Msa1375040:CDS 45.0%
! GGGAGATGGTCTGTTCTTTT+GGG + tig0019619:28791-28810 Msa1375040:CDS 45.0%
TATATAGCTCGCGCTCACTT+TGG + tig0019619:28842-28861 Msa1375040:CDS 45.0%
ATATAGCTCGCGCTCACTTT+GGG + tig0019619:28843-28862 Msa1375040:CDS 45.0%
GGTTTCTAAGTGCACAGACA+CGG + tig0019619:28947-28966 Msa1375040:CDS 45.0%
GCTTGCTCACTTTGTTGAAC+AGG + tig0019619:28969-28988 Msa1375040:CDS 45.0%
! TTTGGTTCGCTTTGCACAAC+AGG + tig0019619:29217-29236 Msa1375040:intron 45.0%
TCGAAAAGGCAAAAGGAGTG+AGG - tig0019619:29358-29377 None:intergenic 45.0%
GGATGGGAAGATATGCATCT+GGG - tig0019619:29598-29617 None:intergenic 45.0%
ATGCATATCTTCCCATCCGA+TGG + tig0019619:29600-29619 Msa1375040:CDS 45.0%
ATGACTGAACTGGCAATGTG+TGG + tig0019619:29853-29872 Msa1375040:exon 45.0%
CAATGTGTGGTTCGATGAAC+AGG + tig0019619:29866-29885 Msa1375040:three_prime_UTR 45.0%
ATATCAACGCTCCTTCCTCA+AGG + tig0019619:29941-29960 Msa1375040:three_prime_UTR 45.0%
ATGTCTGAAGAGGTAGCAGG+TGG + tig0019619:26946-26965 Msa1375040:CDS 50.0%
CCTCCCAAATGTTGGTCAGA+GGG - tig0019619:27027-27046 None:intergenic 50.0%
TCCTCCCAAATGTTGGTCAG+AGG - tig0019619:27028-27047 None:intergenic 50.0%
TCTGACCAACATTTGGGAGG+AGG + tig0019619:27027-27046 Msa1375040:CDS 50.0%
GTCATAAGCAGCATCGTGAG+TGG - tig0019619:27184-27203 None:intergenic 50.0%
AATAGAGAAGCCGCAGGTCT+TGG - tig0019619:27223-27242 None:intergenic 50.0%
ACGTCTAATAGAGAAGCCGC+AGG - tig0019619:27229-27248 None:intergenic 50.0%
ACCGAAGGAAAAGACGGTGT+TGG + tig0019619:27255-27274 Msa1375040:CDS 50.0%
! GCCAACACCGTCTTTTCCTT+CGG - tig0019619:27259-27278 None:intergenic 50.0%
!! GGAAAAGACGGTGTTGGCAA+AGG + tig0019619:27261-27280 Msa1375040:CDS 50.0%
! TTCTGGAGGCCCAAATTCAG+TGG - tig0019619:27418-27437 None:intergenic 50.0%
CTGAATTTGGGCCTCCAGAA+TGG + tig0019619:27418-27437 Msa1375040:CDS 50.0%
ACTGCATTTGACATGCCGCT+GGG + tig0019619:27876-27895 Msa1375040:CDS 50.0%
AGCACACAGCCAAAGAAGCA+GGG - tig0019619:27933-27952 None:intergenic 50.0%
TAGCACACAGCCAAAGAAGC+AGG - tig0019619:27934-27953 None:intergenic 50.0%
CAAATTGTGTTGTGGCCCCT+TGG + tig0019619:28044-28063 Msa1375040:intron 50.0%
!! TGGTGAAGGTACTTCAGCTG+TGG + tig0019619:28414-28433 Msa1375040:intron 50.0%
ACGACTTTGAACTAGGCTGG+AGG + tig0019619:28770-28789 Msa1375040:CDS 50.0%
CGACTTTGAACTAGGCTGGA+GGG + tig0019619:28771-28790 Msa1375040:CDS 50.0%
CTTGCGGGAATGACTACAAC+TGG + tig0019619:28892-28911 Msa1375040:CDS 50.0%
AAGGAGGTCGCAGAGTTTAC+TGG + tig0019619:29465-29484 Msa1375040:CDS 50.0%
GTTTACTGGTCCCCTCATGA+AGG + tig0019619:29479-29498 Msa1375040:CDS 50.0%
CGGATGGGAAGATATGCATC+TGG - tig0019619:29599-29618 None:intergenic 50.0%
ACTCTTTCGGCATGATCGCT+AGG - tig0019619:29668-29687 None:intergenic 50.0%
TGTGTGGTTCGATGAACAGG+TGG + tig0019619:29869-29888 Msa1375040:three_prime_UTR 50.0%
GGTAGCAGGTGGATCCATGT+TGG + tig0019619:26957-26976 Msa1375040:CDS 55.0%
CCCTCTGACCAACATTTGGG+AGG + tig0019619:27024-27043 Msa1375040:CDS 55.0%
GACCAACATTTGGGAGGAGG+AGG + tig0019619:27030-27049 Msa1375040:CDS 55.0%
CACCTCCTCCTCCCAAATGT+TGG - tig0019619:27035-27054 None:intergenic 55.0%
CAACATTTGGGAGGAGGAGG+TGG + tig0019619:27033-27052 Msa1375040:CDS 55.0%
TGGGTCCACCAAATGGAGTG+TGG - tig0019619:27106-27125 None:intergenic 55.0%
AAACCAGTGACGCGCCATTC+TGG - tig0019619:27435-27454 None:intergenic 55.0%
! CTTGAGAAGTGCGTCGAACC+TGG + tig0019619:27603-27622 Msa1375040:CDS 55.0%
GATGGATGAGGCATACGACC+AGG - tig0019619:27802-27821 None:intergenic 55.0%
CACTGCATTTGACATGCCGC+TGG + tig0019619:27875-27894 Msa1375040:CDS 55.0%
CTGCATTTGACATGCCGCTG+GGG + tig0019619:27877-27896 Msa1375040:CDS 55.0%
TTGACATGCCGCTGGGGATA+TGG + tig0019619:27883-27902 Msa1375040:CDS 55.0%
TGACATGCCGCTGGGGATAT+GGG + tig0019619:27884-27903 Msa1375040:CDS 55.0%
ATCCCAACCCATATCCCCAG+CGG - tig0019619:27894-27913 None:intergenic 55.0%
! TGGTGAAGGTACGTCAGCTG+TGG + tig0019619:28277-28296 Msa1375040:intron 55.0%
TGAACTAGGCTGGAGGGAGA+TGG + tig0019619:28777-28796 Msa1375040:CDS 55.0%
TAGCAGCGTGCGATTCCATG+GGG - tig0019619:29331-29350 None:intergenic 55.0%
GTAGCAGCGTGCGATTCCAT+GGG - tig0019619:29332-29351 None:intergenic 55.0%
CATGGAATCGCACGCTGCTA+CGG + tig0019619:29331-29350 Msa1375040:CDS 55.0%
CTGATACGACGCCATCGGAT+GGG - tig0019619:29614-29633 None:intergenic 55.0%
ACTGATACGACGCCATCGGA+TGG - tig0019619:29615-29634 None:intergenic 55.0%
GCACACTGATACGACGCCAT+CGG - tig0019619:29619-29638 None:intergenic 55.0%
TCAACGCTCCTTCCTCAAGG+TGG + tig0019619:29944-29963 Msa1375040:three_prime_UTR 55.0%
CAACGCTCCTTCCTCAAGGT+GGG + tig0019619:29945-29964 Msa1375040:three_prime_UTR 55.0%
AACGCTCCTTCCTCAAGGTG+GGG + tig0019619:29946-29965 Msa1375040:three_prime_UTR 55.0%
CATTTGGGAGGAGGAGGTGG+AGG + tig0019619:27036-27055 Msa1375040:CDS 60.0%
!! TGGCAGGAGTGTTGCCAGCA+CGG - tig0019619:27314-27333 None:intergenic 60.0%
ATGCCGCTGGGGATATGGGT+TGG + tig0019619:27888-27907 Msa1375040:CDS 60.0%
TGCCGCTGGGGATATGGGTT+GGG + tig0019619:27889-27908 Msa1375040:CDS 60.0%
! CCATGGGGGCTCCTGTTTTG+AGG - tig0019619:29316-29335 None:intergenic 60.0%
CCTCAAAACAGGAGCCCCCA+TGG + tig0019619:29313-29332 Msa1375040:CDS 60.0%
AGCAGCGTGCGATTCCATGG+GGG - tig0019619:29330-29349 None:intergenic 60.0%
CGTAGCAGCGTGCGATTCCA+TGG - tig0019619:29333-29352 None:intergenic 60.0%
TGAAACGACGCCCCACCTTG+AGG - tig0019619:29959-29978 None:intergenic 60.0%
TTGGGAGGAGGAGGTGGAGG+AGG + tig0019619:27039-27058 Msa1375040:CDS 65.0%
CCAGTGACGCGCCATTCTGG+AGG - tig0019619:27432-27451 None:intergenic 65.0%
CCTCCAGAATGGCGCGTCAC+TGG + tig0019619:27429-27448 Msa1375040:CDS 65.0%
ACGACGCCCCACCTTGAGGA+AGG - tig0019619:29955-29974 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0019619 gene 26523 30159 26523 ID=Msa1375040;Name=Msa1375040
tig0019619 mRNA 26523 30159 26523 ID=Msa1375040-mRNA-1;Parent=Msa1375040;Name=Msa1375040-mRNA-1;_AED=0.09;_eAED=0.09;_QI=167|1|1|1|0.66|0.5|4|306|702
tig0019619 exon 26523 26675 26523 ID=Msa1375040-mRNA-1:exon:4268;Parent=Msa1375040-mRNA-1
tig0019619 exon 26932 27995 26932 ID=Msa1375040-mRNA-1:exon:4269;Parent=Msa1375040-mRNA-1
tig0019619 exon 28547 28990 28547 ID=Msa1375040-mRNA-1:exon:4270;Parent=Msa1375040-mRNA-1
tig0019619 exon 29239 30159 29239 ID=Msa1375040-mRNA-1:exon:4271;Parent=Msa1375040-mRNA-1
tig0019619 five_prime_UTR 26523 26675 26523 ID=Msa1375040-mRNA-1:five_prime_utr;Parent=Msa1375040-mRNA-1
tig0019619 five_prime_UTR 26932 26945 26932 ID=Msa1375040-mRNA-1:five_prime_utr;Parent=Msa1375040-mRNA-1
tig0019619 CDS 26946 27995 26946 ID=Msa1375040-mRNA-1:cds;Parent=Msa1375040-mRNA-1
tig0019619 CDS 28547 28990 28547 ID=Msa1375040-mRNA-1:cds;Parent=Msa1375040-mRNA-1
tig0019619 CDS 29239 29853 29239 ID=Msa1375040-mRNA-1:cds;Parent=Msa1375040-mRNA-1
tig0019619 three_prime_UTR 29854 30159 29854 ID=Msa1375040-mRNA-1:three_prime_utr;Parent=Msa1375040-mRNA-1
Gene Sequence

>Msa1375040

ATGTCTGAAGAGGTAGCAGGTGGATCCATGTTGGTAGTTTATGATGACGATGATATTGATGTTGATGTTGACGATGATCCCTCTGACCAACATTTGGGAGGAGGAGGTGGAGGAGGATGCGATACAAGCAGCACAGAAGACTCTCCTTCTCATCAAACCACACTCCATTTGGTGGACCCAACAACAACAACAACAACAACTCATCATCACATTCCATACATCGGTCAAATGTTTCCCACTCACGATGCTGCTTATGACTTCTATACTCATTTTGCCAAGACCTGCGGCTTCTCTATTAGACGTCATCGTACCGAAGGAAAAGACGGTGTTGGCAAAGGACTTACTAGACGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGCCAAATCATCAACCCAAACTAAGCCTCAACGAAATAGAAAATCTTCCAGATGTGGTTGTCAGGCTTATATGCGCATAAGCAAAACCACTGAATTTGGGCCTCCAGAATGGCGCGTCACTGGTTTTGCCAACCACCATAATCATGAACTTTTGGAACCAAACCAAGTTCGATTCCTTCCTGCATACAGAACTATATCAGATGCTGACAAAAATCGGATCCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGACTTATGGAGCTTGAGAAGTGCGTCGAACCTGGATATTTGCCTTTTACTGAAAAGGACGTAAGGAATTTACTCCAGTCATTTAGAAAATTAGATCCAGAAGAAGAAACCCTAGATTTGTTAAGAATGTGCAGAAATAGTAAGGACAAAGATCCTAATTTTAAATTTGAGTACACCCTTGATGCAAACAACCGTTTAGAAAATATTGCCTGGTCGTATGCCTCATCCATCCAATTGTATGATATCTTCGGTGATGCTGTGGTGTTTGATACAACACATCGTCTCACTGCATTTGACATGCCGCTGGGGATATGGGTTGGGATAAATAATTATGGAATGCCCTGCTTCTTTGGCTGTGTGCTACTGCAAGATGAAACTGTCCGGTCATTTTCCTGGGCCATAAAGGCTTTCTTAGGTTTTATGAATGGGAAGGCTCCACAGACTATATTAACTGATCAAAATATTTGTCTCAAAGAAGCACTATCTGCAGAAATGCTGATGACAAAACATGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCGTCTTGGTTCAATGCTGTTCTAGGTGAACGCTACAATGACTGGAAGGCTGAGTTTTATAGACTTTATAATCTTGAATCAGTTGACGACTTTGAACTAGGCTGGAGGGAGATGGTCTGTTCTTTTGGGCTGCATTCCAATCGACACATTGTTAATTTATATAGCTCGCGCTCACTTTGGGCATTGCCATATCTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAACGCCTTCATTCAACGGTTTCTAAGTGCACAGACACGGCTTGCTCACTTTGTTGAACAGGCAGCTGTTGCTGTTGATTTTAAAGATCAAACTGGTGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTAGCCTCAAAACAGGAGCCCCCATGGAATCGCACGCTGCTACGGTCCTCACTCCTTTTGCCTTTTCGAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCATCTTTTTCAGTTGAAGATGGTTTTCTTGTGAGACATCACACAAAAGTTGAAGGAGGTCGCAGAGTTTACTGGTCCCCTCATGAAGGAATTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTCTGAGAGTTCTTTCAACAGGAAATTGCTTTCAAATCCCAGATGCATATCTTCCCATCCGATGGCGTCGTATCAGTGTGCCTTCTTCTAAGATTCTTCAAAATGCACCTAGCGATCATGCCGAAAGAGTTAAGCTATTCCAAAATATGGTTTCATCTCTAATTACAGAATCTGCCAAGTCTAAAGAACGATTAGATATGGCAACAGACCAAGTTTCCATTCTTCTGTCTCGCATAAGAGAGCAACCAATTTCATTACAATGTGCCAGAGATACTTCTACCATTAGGAATCTATGA
Protein sequence

>Msa1375040

MSEEVAGGSMLVVYDDDDIDVDVDDDPSDQHLGGGGGGGCDTSSTEDSPSHQTTLHLVDPTTTTTTTHHHIPYIGQMFPTHDAAYDFYTHFAKTCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKSSTQTKPQRNRKSSRCGCQAYMRISKTTEFGPPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEETLDLLRMCRNSKDKDPNFKFEYTLDANNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLQDETVRSFSWAIKAFLGFMNGKAPQTILTDQNICLKEALSAEMLMTKHAFCIWMIVAKFPSWFNAVLGERYNDWKAEFYRLYNLESVDDFELGWREMVCSFGLHSNRHIVNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQAAVAVDFKDQTGEQQTMQQNLQNVSLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRRVYWSPHEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDAYLPIRWRRISVPSSKILQNAPSDHAERVKLFQNMVSSLITESAKSKERLDMATDQVSILLSRIREQPISLQCARDTSTIRNL*