Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037680 | XP_013460875.1 | 99.306 | 288 | 2 | 0 | 1 | 288 | 1 | 288 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015570 | Msa0037680 | 0.812429 | 4.258293e-51 | -8.615850e-47 |
| Msa0030070 | Msa0037680 | 0.812043 | 5.171159e-51 | -8.615850e-47 |
| Msa0037680 | Msa0044780 | -0.845278 | 4.486347e-59 | -8.615850e-47 |
| Msa0037680 | Msa0077570 | -0.817398 | 3.367332e-52 | -8.615850e-47 |
| Msa0037680 | Msa0078130 | 0.811947 | 5.424205e-51 | -8.615850e-47 |
| Msa0037680 | Msa0085690 | -0.812284 | 4.580320e-51 | -8.615850e-47 |
| Msa0037680 | Msa0094570 | 0.806602 | 7.597496e-50 | -8.615850e-47 |
| Msa0037680 | Msa0125590 | 0.813483 | 2.501620e-51 | -8.615850e-47 |
| Msa0037680 | Msa0132700 | 0.805348 | 1.393862e-49 | -8.615850e-47 |
| Msa0037680 | Msa0137010 | -0.801505 | 8.725624e-49 | -8.615850e-47 |
| Msa0037680 | Msa0156050 | 0.835486 | 1.631552e-56 | -8.615850e-47 |
| Msa0037680 | Msa0156090 | 0.826846 | 2.167622e-54 | -8.615850e-47 |
| Msa0037680 | Msa0168380 | 0.804969 | 1.673283e-49 | -8.615850e-47 |
| Msa0037680 | Msa0170070 | 0.832210 | 1.076640e-55 | -8.615850e-47 |
| Msa0037680 | Msa0178450 | 0.819433 | 1.164188e-52 | -8.615850e-47 |
| Msa0037680 | Msa0184700 | 0.804751 | 1.858191e-49 | -8.615850e-47 |
| Msa0037680 | Msa0203080 | 0.802191 | 6.307231e-49 | -8.615850e-47 |
| Msa0037680 | Msa0204970 | 0.810430 | 1.157528e-50 | -8.615850e-47 |
| Msa0037680 | Msa0211460 | 0.815245 | 1.020353e-51 | -8.615850e-47 |
| Msa0037680 | Msa0238960 | -0.828415 | 9.103869e-55 | -8.615850e-47 |
| Msa0037680 | Msa0249870 | 0.807332 | 5.323876e-50 | -8.615850e-47 |
| Msa0037680 | Msa0276800 | -0.809615 | 1.733222e-50 | -8.615850e-47 |
| Msa0037680 | Msa0281540 | 0.803296 | 3.729767e-49 | -8.615850e-47 |
| Msa0037680 | Msa0316720 | -0.806348 | 8.591427e-50 | -8.615850e-47 |
| Msa0037680 | Msa0371350 | -0.824066 | 9.872217e-54 | -8.615850e-47 |
| Msa0037680 | Msa0386880 | 0.825009 | 5.922226e-54 | -8.615850e-47 |
| Msa0037680 | Msa0387740 | -0.800215 | 1.600122e-48 | -8.615850e-47 |
| Msa0037680 | Msa0402770 | 0.828224 | 1.012509e-54 | -8.615850e-47 |
| Msa0037680 | Msa0433630 | 0.807012 | 6.221511e-50 | -8.615850e-47 |
| Msa0037680 | Msa0434090 | 0.862481 | 4.915209e-64 | -8.615850e-47 |
| Msa0037680 | Msa0438490 | 0.805905 | 1.065208e-49 | -8.615850e-47 |
| Msa0037680 | Msa0457570 | 0.800988 | 1.112868e-48 | -8.615850e-47 |
| Msa0037680 | Msa0466520 | 0.825465 | 4.617927e-54 | -8.615850e-47 |
| Msa0037680 | Msa0467170 | 0.824700 | 7.001921e-54 | -8.615850e-47 |
| Msa0037680 | Msa0467330 | 0.823581 | 1.282133e-53 | -8.615850e-47 |
| Msa0037680 | Msa0477900 | 0.853244 | 2.715701e-61 | -8.615850e-47 |
| Msa0037680 | Msa0500920 | 0.801277 | 9.716007e-49 | -8.615850e-47 |
| Msa0037680 | Msa0506750 | 0.802076 | 6.659066e-49 | -8.615850e-47 |
| Msa0037680 | Msa0527850 | 0.832366 | 9.847491e-56 | -8.615850e-47 |
| Msa0037680 | Msa0541880 | 0.821949 | 3.075888e-53 | -8.615850e-47 |
| Msa0037680 | Msa0541940 | 0.826222 | 3.054436e-54 | -8.615850e-47 |
| Msa0037680 | Msa0568460 | -0.830583 | 2.706541e-55 | -8.615850e-47 |
| Msa0037680 | Msa0570010 | 0.804103 | 2.536844e-49 | -8.615850e-47 |
| Msa0037680 | Msa0582460 | 0.823396 | 1.417125e-53 | -8.615850e-47 |
| Msa0037680 | Msa0586200 | 0.826135 | 3.202327e-54 | -8.615850e-47 |
| Msa0037680 | Msa0610700 | -0.803103 | 4.090017e-49 | -8.615850e-47 |
| Msa0037680 | Msa0612520 | 0.811195 | 7.905604e-51 | -8.615850e-47 |
| Msa0037680 | Msa0618840 | 0.808838 | 2.543476e-50 | -8.615850e-47 |
| Msa0037680 | Msa0618990 | 0.805294 | 1.430758e-49 | -8.615850e-47 |
| Msa0037680 | Msa0619710 | 0.828705 | 7.747611e-55 | -8.615850e-47 |
| Msa0037680 | Msa0625620 | 0.813325 | 2.710698e-51 | -8.615850e-47 |
| Msa0037680 | Msa0660090 | 0.827868 | 1.233403e-54 | -8.615850e-47 |
| Msa0037680 | Msa0661480 | 0.833135 | 6.347180e-56 | -8.615850e-47 |
| Msa0037680 | Msa0661800 | 0.808060 | 3.728274e-50 | -8.615850e-47 |
| Msa0037680 | Msa0662820 | 0.800594 | 1.339476e-48 | -8.615850e-47 |
| Msa0037680 | Msa0663290 | 0.819431 | 1.165423e-52 | -8.615850e-47 |
| Msa0037680 | Msa0664070 | 0.818349 | 2.053778e-52 | -8.615850e-47 |
| Msa0037680 | Msa0685610 | 0.819855 | 9.328577e-53 | -8.615850e-47 |
| Msa0037680 | Msa0687090 | 0.821241 | 4.482586e-53 | -8.615850e-47 |
| Msa0037680 | Msa0695560 | 0.841094 | 5.851263e-58 | -8.615850e-47 |
| Msa0037680 | Msa0706150 | 0.834715 | 2.553154e-56 | -8.615850e-47 |
| Msa0037680 | Msa0708980 | 0.822262 | 2.602994e-53 | -8.615850e-47 |
| Msa0037680 | Msa0716480 | 0.805597 | 1.236222e-49 | -8.615850e-47 |
| Msa0037680 | Msa0717900 | 0.801560 | 8.498247e-49 | -8.615850e-47 |
| Msa0037680 | Msa0719270 | 0.872416 | 3.235094e-67 | -8.615850e-47 |
| Msa0037680 | Msa0732970 | 0.804875 | 1.751110e-49 | -8.615850e-47 |
| Msa0037680 | Msa0733080 | 0.800925 | 1.146336e-48 | -8.615850e-47 |
| Msa0037680 | Msa0737020 | 0.812449 | 4.215088e-51 | -8.615850e-47 |
| Msa0037680 | Msa0745140 | 0.846305 | 2.361726e-59 | -8.615850e-47 |
| Msa0037680 | Msa0746650 | 0.842433 | 2.593547e-58 | -8.615850e-47 |
| Msa0037680 | Msa0772220 | 0.805362 | 1.384458e-49 | -8.615850e-47 |
| Msa0037680 | Msa0773960 | 0.805930 | 1.052173e-49 | -8.615850e-47 |
| Msa0037680 | Msa0776640 | 0.847933 | 8.452720e-60 | -8.615850e-47 |
| Msa0037680 | Msa0778600 | 0.871457 | 6.734259e-67 | -8.615850e-47 |
| Msa0037680 | Msa0790650 | -0.823476 | 1.357215e-53 | -8.615850e-47 |
| Msa0037680 | Msa0825920 | 0.840275 | 9.590591e-58 | -8.615850e-47 |
| Msa0037680 | Msa0837460 | 0.815914 | 7.239918e-52 | -8.615850e-47 |
| Msa0037680 | Msa0838620 | -0.804222 | 2.395446e-49 | -8.615850e-47 |
| Msa0037680 | Msa0840520 | 0.866065 | 3.742149e-65 | -8.615850e-47 |
| Msa0037680 | Msa0865420 | 0.845089 | 5.048060e-59 | -8.615850e-47 |
| Msa0037680 | Msa0866530 | 0.820967 | 5.185150e-53 | -8.615850e-47 |
| Msa0037680 | Msa0930040 | 0.815339 | 9.727451e-52 | -8.615850e-47 |
| Msa0037680 | Msa0945030 | 0.822312 | 2.534444e-53 | -8.615850e-47 |
| Msa0037680 | Msa0945900 | 0.824550 | 7.597442e-54 | -8.615850e-47 |
| Msa0037680 | Msa0982730 | 0.843307 | 1.518497e-58 | -8.615850e-47 |
| Msa0037680 | Msa1029820 | 0.806922 | 6.499594e-50 | -8.615850e-47 |
| Msa0037680 | Msa1041060 | 0.812077 | 5.083236e-51 | -8.615850e-47 |
| Msa0037680 | Msa1057620 | -0.837417 | 5.263566e-57 | -8.615850e-47 |
| Msa0037680 | Msa1068940 | 0.810117 | 1.351830e-50 | -8.615850e-47 |
| Msa0037680 | Msa1070620 | 0.804770 | 1.841400e-49 | -8.615850e-47 |
| Msa0037680 | Msa1078860 | 0.820735 | 5.862101e-53 | -8.615850e-47 |
| Msa0037680 | Msa1078990 | 0.804129 | 2.504863e-49 | -8.615850e-47 |
| Msa0037680 | Msa1101980 | -0.833564 | 4.960487e-56 | -8.615850e-47 |
| Msa0037680 | Msa1111910 | 0.801799 | 7.591769e-49 | -8.615850e-47 |
| Msa0037680 | Msa1115600 | 0.803536 | 3.326295e-49 | -8.615850e-47 |
| Msa0037680 | Msa1156710 | 0.811080 | 8.372328e-51 | -8.615850e-47 |
| Msa0037680 | Msa1158440 | 0.803789 | 2.947581e-49 | -8.615850e-47 |
| Msa0037680 | Msa1168310 | 0.820149 | 7.990408e-53 | -8.615850e-47 |
| Msa0037680 | Msa1169690 | 0.805670 | 1.193494e-49 | -8.615850e-47 |
| Msa0037680 | Msa1183910 | 0.820783 | 5.713907e-53 | -8.615850e-47 |
| Msa0037680 | Msa1201170 | 0.872145 | 3.982771e-67 | -8.615850e-47 |
| Msa0037680 | Msa1205110 | 0.804778 | 1.834554e-49 | -8.615850e-47 |
| Msa0037680 | Msa1206040 | 0.834746 | 2.507466e-56 | -8.615850e-47 |
| Msa0037680 | Msa1228580 | 0.821403 | 4.112330e-53 | -8.615850e-47 |
| Msa0037680 | Msa1255030 | -0.817297 | 3.547850e-52 | -8.615850e-47 |
| Msa0037680 | Msa1263740 | 0.804188 | 2.434848e-49 | -8.615850e-47 |
| Msa0037680 | Msa1263780 | 0.810716 | 1.003600e-50 | -8.615850e-47 |
| Msa0037680 | Msa1294280 | 0.824106 | 9.662563e-54 | -8.615850e-47 |
| Msa0037680 | Msa1294790 | 0.811380 | 7.206310e-51 | -8.615850e-47 |
| Msa0037680 | Msa1297070 | 0.837689 | 4.481995e-57 | -8.615850e-47 |
| Msa0037680 | Msa1308850 | 0.836278 | 1.027828e-56 | -8.615850e-47 |
| Msa0037680 | Msa1328870 | 0.835422 | 1.693847e-56 | -8.615850e-47 |
| Msa0037680 | Msa1347390 | 0.838778 | 2.349551e-57 | -8.615850e-47 |
| Msa0037680 | Msa1348330 | 0.819603 | 1.065007e-52 | -8.615850e-47 |
| Msa0037680 | Msa1352630 | -0.804353 | 2.249614e-49 | -8.615850e-47 |
| Msa0037680 | Msa1368390 | 0.812646 | 3.818617e-51 | -8.615850e-47 |
| Msa0037680 | Msa1375000 | -0.809901 | 1.504448e-50 | -8.615850e-47 |
| Msa0037680 | Msa1380500 | 0.813296 | 2.749563e-51 | -8.615850e-47 |
| Msa0037680 | Msa1387450 | -0.813246 | 2.819967e-51 | -8.615850e-47 |
| Msa0037680 | Msa1387500 | 0.826165 | 3.150878e-54 | -8.615850e-47 |
| Msa0037680 | Msa1406720 | 0.834369 | 3.118556e-56 | -8.615850e-47 |
| Msa0037680 | Msa1435960 | 0.816046 | 6.766112e-52 | -8.615850e-47 |
| Msa0037680 | Msa1436620 | 0.865743 | 4.732096e-65 | -8.615850e-47 |
| Msa0037680 | Msa1438510 | 0.806335 | 8.646669e-50 | -8.615850e-47 |
| Msa0037680 | Msa1461770 | 0.800062 | 1.718478e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037680 | MtrunA17_Chr3g0115701 | 99.306 | 288 | 2 | 0 | 1 | 288 | 1 | 288 | 0.0 | 578 |
| Msa0037680 | MtrunA17_Chr3g0124021 | 59.344 | 305 | 96 | 7 | 4 | 288 | 3 | 299 | 2.73e-108 | 316 |
| Msa0037680 | MtrunA17_Chr8g0382291 | 48.344 | 302 | 124 | 9 | 6 | 285 | 4 | 295 | 4.84e-72 | 225 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037680 | AT1G35780.1 | 68.814 | 295 | 76 | 9 | 1 | 288 | 1 | 286 | 2.83e-125 | 359 |
| Msa0037680 | AT1G78150.1 | 66.897 | 290 | 78 | 4 | 1 | 288 | 1 | 274 | 3.33e-123 | 353 |
| Msa0037680 | AT1G78150.2 | 66.897 | 290 | 78 | 4 | 1 | 288 | 1 | 274 | 3.33e-123 | 353 |
| Msa0037680 | AT1G78150.3 | 60.815 | 319 | 78 | 5 | 1 | 288 | 1 | 303 | 1.04e-116 | 338 |
| Msa0037680 | AT4G39860.3 | 59.736 | 303 | 103 | 5 | 1 | 288 | 1 | 299 | 5.25e-113 | 328 |
| Msa0037680 | AT4G39860.4 | 59.736 | 303 | 103 | 5 | 1 | 288 | 1 | 299 | 5.25e-113 | 328 |
| Msa0037680 | AT4G39860.1 | 59.736 | 303 | 103 | 5 | 1 | 288 | 1 | 299 | 5.25e-113 | 328 |
| Msa0037680 | AT4G39860.2 | 59.406 | 303 | 103 | 6 | 1 | 288 | 1 | 298 | 2.96e-110 | 321 |
| Msa0037680 | AT1G35780.2 | 65.611 | 221 | 62 | 8 | 73 | 288 | 1 | 212 | 4.90e-82 | 246 |
| Msa0037680 | AT1G35780.4 | 65.611 | 221 | 62 | 8 | 73 | 288 | 1 | 212 | 4.90e-82 | 246 |
| Msa0037680 | AT1G35780.3 | 65.611 | 221 | 62 | 8 | 73 | 288 | 1 | 212 | 4.90e-82 | 246 |
| Msa0037680 | AT2G22270.1 | 44.248 | 339 | 123 | 16 | 2 | 288 | 4 | 328 | 1.22e-64 | 206 |
| Msa0037680 | AT2G22270.2 | 43.206 | 287 | 109 | 12 | 51 | 288 | 8 | 289 | 1.24e-52 | 174 |
Find 107 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTTGACCTTGTATTTC+TGG | 0.093210 | 1_1:+66800697 | Msa0037680:three_prime_UTR |
| GACCTTGTATTTCTGGGTTT+TGG | 0.124016 | 1_1:+66800704 | Msa0037680:three_prime_UTR |
| CTGACAGTTCTGCAAATTTC+TGG | 0.130552 | 1_1:-66800417 | None:intergenic |
| ATTGGCCGAGGCTTGATTTC+TGG | 0.202035 | 1_1:-66799941 | None:intergenic |
| GGGTTGGCACTGCCATCCTC+TGG | 0.241194 | 1_1:-66799561 | None:intergenic |
| TCATAATACTGTCTTTGTTT+TGG | 0.248261 | 1_1:+66800639 | Msa0037680:three_prime_UTR |
| TCCAATATGCGAGGAGTAAT+TGG | 0.251827 | 1_1:-66799959 | None:intergenic |
| ATCGATTGGACGAGTGTTAA+TGG | 0.254059 | 1_1:-66800865 | None:intergenic |
| GCCAATTACTCCTCGCATAT+TGG | 0.297633 | 1_1:+66799958 | Msa0037680:CDS |
| GATTAATATCTTGACCAAAA+AGG | 0.312653 | 1_1:+66800749 | Msa0037680:three_prime_UTR |
| TCAGGAAACAACATATTTAA+AGG | 0.318062 | 1_1:+66800436 | Msa0037680:CDS |
| TGTTCTTTGGCGTGTGAATA+TGG | 0.319007 | 1_1:+66798351 | Msa0037680:exon |
| TTGCGCTGGTATAATTTGTT+AGG | 0.345832 | 1_1:+66800605 | Msa0037680:exon |
| GCTTGCTTAATGAAGTGATT+TGG | 0.352725 | 1_1:+66800819 | Msa0037680:three_prime_UTR |
| TAAGGTGGTGTTTGGTGGTC+AGG | 0.358985 | 1_1:+66798622 | Msa0037680:CDS |
| TATTAATCAAGGAACCTAAA+AGG | 0.361392 | 1_1:-66800734 | None:intergenic |
| TTATTTGACCTTGTATTTCT+GGG | 0.366244 | 1_1:+66800698 | Msa0037680:three_prime_UTR |
| GGGATCAGTAAGGTGGTGTT+TGG | 0.367307 | 1_1:+66798614 | Msa0037680:CDS |
| TGAGAACGAGTAGCAGAATA+AGG | 0.373471 | 1_1:-66798463 | None:intergenic |
| TAAAGGCGACTCTCCGCCTT+TGG | 0.377160 | 1_1:+66800453 | Msa0037680:CDS |
| TACCTGGTACATGCGAATTC+CGG | 0.380145 | 1_1:-66799598 | None:intergenic |
| GCGTGAGCTCAGTGGAACTA+TGG | 0.388798 | 1_1:+66799835 | Msa0037680:CDS |
| GGTTGGCACTGCCATCCTCT+GGG | 0.400803 | 1_1:-66799560 | None:intergenic |
| TCACGCTGCTTGGCCACCTC+AGG | 0.402765 | 1_1:-66799818 | None:intergenic |
| CAACTGCAGATCTACTTGTT+TGG | 0.409333 | 1_1:+66798407 | Msa0037680:CDS |
| AAATTTCAGCAAGCTATTGC+GGG | 0.412531 | 1_1:+66799734 | Msa0037680:intron |
| TTCTGCTACTCGTTCTCATC+AGG | 0.414960 | 1_1:+66798468 | Msa0037680:CDS |
| TATAAGATGAAGGAGATTAC+TGG | 0.435048 | 1_1:+66799501 | Msa0037680:CDS |
| TTTGGTCAAGATATTAATCA+AGG | 0.435079 | 1_1:-66800745 | None:intergenic |
| AATTTCTAGAAAGCCTTGTT+CGG | 0.448306 | 1_1:+66799476 | Msa0037680:intron |
| GGAATCAGTCATATCTCCTT+TGG | 0.451670 | 1_1:+66799755 | Msa0037680:CDS |
| CAGAAATTTGCAGAACTGTC+AGG | 0.455797 | 1_1:+66800418 | Msa0037680:CDS |
| TGGGGCCTCATCTTCTCCAT+TGG | 0.457851 | 1_1:-66799541 | None:intergenic |
| TGTTACCTTGGTTAGGGTGA+TGG | 0.460687 | 1_1:+66800337 | Msa0037680:intron |
| GCAATGCTGCTCTCGCCACC+AGG | 0.462130 | 1_1:-66800586 | None:intergenic |
| GAACAAGAGAGAAAAGATAG+TGG | 0.472673 | 1_1:-66798333 | None:intergenic |
| AACCCTTCAGCAAATAAAAC+CGG | 0.473858 | 1_1:+66799579 | Msa0037680:CDS |
| AACAAGAGAGAAAAGATAGT+GGG | 0.474343 | 1_1:-66798332 | None:intergenic |
| GCAAAACTCCGAGAGATAAG+TGG | 0.475331 | 1_1:+66800499 | Msa0037680:CDS |
| TCCACTGAGCTCACGCTGCT+TGG | 0.483660 | 1_1:-66799828 | None:intergenic |
| ATCAGTAAGGTGGTGTTTGG+TGG | 0.488066 | 1_1:+66798617 | Msa0037680:CDS |
| GCGGAGTCTAGAGACTATCT+AGG | 0.489892 | 1_1:+66800547 | Msa0037680:CDS |
| GTAGCAGAATAAGGAGGAGC+TGG | 0.490907 | 1_1:-66798454 | None:intergenic |
| GCCACCTCAGGCAATGAAGC+AGG | 0.491990 | 1_1:-66799806 | None:intergenic |
| GGAGATCAAGACGCTACTAC+AGG | 0.494262 | 1_1:+66800358 | Msa0037680:CDS |
| GGAGCTGGAGAATCATTGAT+TGG | 0.497326 | 1_1:-66798439 | None:intergenic |
| CTCGCATATTGGAGTTGAAA+GGG | 0.499999 | 1_1:+66799969 | Msa0037680:CDS |
| GAGACTATCTAGGCGGCGTA+CGG | 0.501215 | 1_1:+66800557 | Msa0037680:CDS |
| TTGAAAGGGAGCATAGGCCT+TGG | 0.501700 | 1_1:+66799983 | Msa0037680:CDS |
| TGGCGAGAGCAGCATTGCGC+TGG | 0.511766 | 1_1:+66800591 | Msa0037680:CDS |
| TTAATATTTATATATAGTAC+AGG | 0.511879 | 1_1:+66798145 | Msa0037680:five_prime_UTR |
| GGCGGCGTACGGAAGCCGCC+TGG | 0.516854 | 1_1:+66800568 | Msa0037680:CDS |
| ATGAAGGAGATTACTGGCAG+TGG | 0.519536 | 1_1:+66799507 | Msa0037680:CDS |
| GCAAAGTGCAAGGAGCTTAG+TGG | 0.534359 | 1_1:+66799896 | Msa0037680:CDS |
| AAAATTTCAGCAAGCTATTG+CGG | 0.535280 | 1_1:+66799733 | Msa0037680:intron |
| GAAGATGAGGCCCCAGAGGA+TGG | 0.538465 | 1_1:+66799549 | Msa0037680:CDS |
| AACCGGAATTCGCATGTACC+AGG | 0.538686 | 1_1:+66799596 | Msa0037680:CDS |
| CACCACCAGAAATCAAGCCT+CGG | 0.541618 | 1_1:+66799936 | Msa0037680:CDS |
| GAAGTGTGTGGTTTCCTCAC+CGG | 0.545734 | 1_1:-66798385 | None:intergenic |
| GGGAGTAACATCTTTGCTGA+TGG | 0.546711 | 1_1:+66800520 | Msa0037680:CDS |
| GTGTTAATGGAAATAATCAA+TGG | 0.549038 | 1_1:-66800852 | None:intergenic |
| CGAGGCTTGATTTCTGGTGG+TGG | 0.550569 | 1_1:-66799935 | None:intergenic |
| GCCTGCTTCATTGCCTGAGG+TGG | 0.550736 | 1_1:+66799805 | Msa0037680:CDS |
| AACACTCTCTTCCTCGCCAA+AGG | 0.557790 | 1_1:-66799771 | None:intergenic |
| AGGTTGAGAGCTTAAACAAA+CGG | 0.563427 | 1_1:+66798657 | Msa0037680:CDS |
| TGTTACTCCCACTTATCTCT+CGG | 0.571485 | 1_1:-66800507 | None:intergenic |
| ACAAGAGAGAAAAGATAGTG+GGG | 0.571498 | 1_1:-66798331 | None:intergenic |
| TTGTTCGGAGTATAAGATGA+AGG | 0.575022 | 1_1:+66799491 | Msa0037680:CDS |
| TAACATCTTTGCTGATGGAA+AGG | 0.580663 | 1_1:+66800525 | Msa0037680:CDS |
| ATGCGAGGAGTAATTGGCCG+AGG | 0.582756 | 1_1:-66799953 | None:intergenic |
| TTCATCTTATACTCCGAACA+AGG | 0.583995 | 1_1:-66799489 | None:intergenic |
| CCTCGCATATTGGAGTTGAA+AGG | 0.584117 | 1_1:+66799968 | Msa0037680:CDS |
| CTGCTGAGAAATCGTTGAGT+GGG | 0.587772 | 1_1:+66800476 | Msa0037680:CDS |
| TCCCAAAACCCAGAAATACA+AGG | 0.590755 | 1_1:-66800706 | None:intergenic |
| GTTGGCACTGCCATCCTCTG+GGG | 0.593210 | 1_1:-66799559 | None:intergenic |
| GGCCGAGGCTTGATTTCTGG+TGG | 0.598668 | 1_1:-66799938 | None:intergenic |
| AACAAACAACCAATTAGCAA+TGG | 0.599628 | 1_1:-66800773 | None:intergenic |
| GCTTTCTGATGCAAAGTGCA+AGG | 0.600086 | 1_1:+66799886 | Msa0037680:CDS |
| GAGATCAAGACGCTACTACA+GGG | 0.606115 | 1_1:+66800359 | Msa0037680:CDS |
| AACGATTTCTCAGCAGCCAA+AGG | 0.606743 | 1_1:-66800469 | None:intergenic |
| TTGGAGTTGAAAGGGAGCAT+AGG | 0.609664 | 1_1:+66799977 | Msa0037680:CDS |
| CAAAACTCCGAGAGATAAGT+GGG | 0.610976 | 1_1:+66800500 | Msa0037680:CDS |
| AGTGGAATATTTGTAGCCAA+TGG | 0.611359 | 1_1:+66799525 | Msa0037680:CDS |
| ATGCTGCTCTCGCCACCAGG+CGG | 0.612447 | 1_1:-66800583 | None:intergenic |
| TGCATACATGACTTTCTCCA+AGG | 0.621174 | 1_1:-66800000 | None:intergenic |
| TGTAGCCAATGGAGAAGATG+AGG | 0.623609 | 1_1:+66799536 | Msa0037680:CDS |
| GCCGTCGGATGGGATCAGTA+AGG | 0.631418 | 1_1:+66798604 | Msa0037680:intron |
| GCCAAGCAGCGTGAGCTCAG+TGG | 0.638579 | 1_1:+66799827 | Msa0037680:CDS |
| GCTGCTGAGAAATCGTTGAG+TGG | 0.639212 | 1_1:+66800475 | Msa0037680:CDS |
| TGGTCAGGTTACTGATGAAG+AGG | 0.639819 | 1_1:+66798637 | Msa0037680:CDS |
| AAAGCCTGCTTCATTGCCTG+AGG | 0.644684 | 1_1:+66799802 | Msa0037680:CDS |
| GGCGTACGGAAGCCGCCTGG+TGG | 0.647825 | 1_1:+66800571 | Msa0037680:CDS |
| CATCTTTGCTGATGGAAAGG+CGG | 0.648644 | 1_1:+66800528 | Msa0037680:CDS |
| CAGTCATATCTCCTTTGGCG+AGG | 0.651432 | 1_1:+66799760 | Msa0037680:CDS |
| GTCGGATGGGATCAGTAAGG+TGG | 0.653944 | 1_1:+66798607 | Msa0037680:CDS |
| GATTTCTCAGCAGCCAAAGG+CGG | 0.655339 | 1_1:-66800466 | None:intergenic |
| CCTTTCAACTCCAATATGCG+AGG | 0.661806 | 1_1:-66799968 | None:intergenic |
| GAACGAGTAGCAGAATAAGG+AGG | 0.662064 | 1_1:-66798460 | None:intergenic |
| TGGAGAAGATGAGGCCCCAG+AGG | 0.662591 | 1_1:+66799545 | Msa0037680:CDS |
| AGATCAAGACGCTACTACAG+GGG | 0.669255 | 1_1:+66800360 | Msa0037680:CDS |
| ACCTTACTGATCCCATCCGA+CGG | 0.677868 | 1_1:-66798605 | None:intergenic |
| TTTGGCGTGTGAATATGGAG+AGG | 0.686240 | 1_1:+66798356 | Msa0037680:exon |
| AGATCTGCAGTTGAAGTGTG+TGG | 0.688104 | 1_1:-66798397 | None:intergenic |
| TGGAGAGGAACACACCGGTG+AGG | 0.711487 | 1_1:+66798371 | Msa0037680:CDS |
| TGCTGAGAAATCGTTGAGTG+GGG | 0.718252 | 1_1:+66800477 | Msa0037680:CDS |
| GAATATGGAGAGGAACACAC+CGG | 0.761577 | 1_1:+66798366 | Msa0037680:exon |
| GAGTCTAGAGACTATCTAGG+CGG | 0.855715 | 1_1:+66800550 | Msa0037680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATTTATATATAGTAC+AGG | + | chr1_1:66798145-66798164 | Msa0037680:five_prime_UTR | 10.0% |
| !!! | TTATGATTTTATTTTTTGTT+TGG | + | chr1_1:66798563-66798582 | Msa0037680:intron | 10.0% |
| !! | ATTTGAATTAGCTAAAAATA+AGG | - | chr1_1:66798701-66798720 | None:intergenic | 15.0% |
| !!! | TTTTAATAAAATAACTGTCA+CGG | + | chr1_1:66798758-66798777 | Msa0037680:intron | 15.0% |
| !!! | TGGTTTTAATTAATTTTTAG+TGG | + | chr1_1:66800659-66800678 | Msa0037680:three_prime_UTR | 15.0% |
| !!! | GGTTTTAATTAATTTTTAGT+GGG | + | chr1_1:66800660-66800679 | Msa0037680:three_prime_UTR | 15.0% |
| !!! | GTTTTAATTAATTTTTAGTG+GGG | + | chr1_1:66800661-66800680 | Msa0037680:three_prime_UTR | 15.0% |
| !!! | TTATTTTTTGTTTGGTTGAT+TGG | + | chr1_1:66798571-66798590 | Msa0037680:intron | 20.0% |
| !! | TAAAGACAAAAATAGAAACA+GGG | - | chr1_1:66798866-66798885 | None:intergenic | 20.0% |
| !! | ATAAAGACAAAAATAGAAAC+AGG | - | chr1_1:66798867-66798886 | None:intergenic | 20.0% |
| !!! | ATTTTTTACCATTTAGAGTA+GGG | + | chr1_1:66799073-66799092 | Msa0037680:intron | 20.0% |
| !! | GCTTAAATATGTATCATTTA+TGG | + | chr1_1:66799369-66799388 | Msa0037680:intron | 20.0% |
| !!! | GATCCAAATTTTAAAATTGA+GGG | - | chr1_1:66800089-66800108 | None:intergenic | 20.0% |
| !!! | TGATCCAAATTTTAAAATTG+AGG | - | chr1_1:66800090-66800109 | None:intergenic | 20.0% |
| !!! | ATTCATATAGTACTTTGTTT+AGG | + | chr1_1:66800141-66800160 | Msa0037680:intron | 20.0% |
| !!! | TTTTAAAGAGTTTAGTTGAG+TGG | - | chr1_1:66798305-66798324 | None:intergenic | 25.0% |
| ! | TTATTTACCATCTAATAGGA+AGG | + | chr1_1:66798939-66798958 | Msa0037680:intron | 25.0% |
| ! | TATAATACCTTCCTATTAGA+TGG | - | chr1_1:66798949-66798968 | None:intergenic | 25.0% |
| !!! | ATCTAATAGGAAGGTATTAT+AGG | + | chr1_1:66798948-66798967 | Msa0037680:intron | 25.0% |
| !!! | CATTTTTTACCATTTAGAGT+AGG | + | chr1_1:66799072-66799091 | Msa0037680:intron | 25.0% |
| ! | GAAATCACATTTGCAATATT+GGG | + | chr1_1:66799095-66799114 | Msa0037680:intron | 25.0% |
| ! | TTGTTTAGTATCATACATAC+AGG | + | chr1_1:66799220-66799239 | Msa0037680:intron | 25.0% |
| ! | TGTTTAGTATCATACATACA+GGG | + | chr1_1:66799221-66799240 | Msa0037680:intron | 25.0% |
| !! | TATAGTTTTTGCCTAAATTG+CGG | + | chr1_1:66799250-66799269 | Msa0037680:intron | 25.0% |
| !!! | TGACCCTCAATTTTAAAATT+TGG | + | chr1_1:66800083-66800102 | Msa0037680:intron | 25.0% |
| !! | ATAACTATAGCTTTTCGTTT+CGG | - | chr1_1:66800193-66800212 | None:intergenic | 25.0% |
| ! | TGATTCATTCTCAAAATACT+TGG | - | chr1_1:66800237-66800256 | None:intergenic | 25.0% |
| !!! | AGTATTTTGAGAATGAATCA+TGG | + | chr1_1:66800237-66800256 | Msa0037680:intron | 25.0% |
| ! | TCAGGAAACAACATATTTAA+AGG | + | chr1_1:66800436-66800455 | Msa0037680:CDS | 25.0% |
| !!! | TCATAATACTGTCTTTGTTT+TGG | + | chr1_1:66800639-66800658 | Msa0037680:three_prime_UTR | 25.0% |
| ! | ATTATTTGACCTTGTATTTC+TGG | + | chr1_1:66800697-66800716 | Msa0037680:three_prime_UTR | 25.0% |
| ! | TTATTTGACCTTGTATTTCT+GGG | + | chr1_1:66800698-66800717 | Msa0037680:three_prime_UTR | 25.0% |
| ! | TATTAATCAAGGAACCTAAA+AGG | - | chr1_1:66800737-66800756 | None:intergenic | 25.0% |
| ! | TTTGGTCAAGATATTAATCA+AGG | - | chr1_1:66800748-66800767 | None:intergenic | 25.0% |
| ! | GATTAATATCTTGACCAAAA+AGG | + | chr1_1:66800749-66800768 | Msa0037680:three_prime_UTR | 25.0% |
| !! | TCATAATCATGTGTTTTCTT+CGG | + | chr1_1:66800795-66800814 | Msa0037680:three_prime_UTR | 25.0% |
| AACAAGAGAGAAAAGATAGT+GGG | - | chr1_1:66798335-66798354 | None:intergenic | 30.0% | |
| ! | ATCTTTTCTCTCTTGTTCTT+TGG | + | chr1_1:66798338-66798357 | Msa0037680:five_prime_UTR | 30.0% |
| ACGTAACATTTCGTTGTTAT+TGG | + | chr1_1:66798509-66798528 | Msa0037680:intron | 30.0% | |
| CATAAGCAATTGAACTCAAA+CGG | - | chr1_1:66798548-66798567 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGTTCCGATGTTTC+AGG | + | chr1_1:66798787-66798806 | Msa0037680:intron | 30.0% |
| ACAAACAAAACCTGAAACAT+CGG | - | chr1_1:66798800-66798819 | None:intergenic | 30.0% | |
| CCTATTAGATGGTAAATAAC+AGG | - | chr1_1:66798938-66798957 | None:intergenic | 30.0% | |
| ! | CCTGTTATTTACCATCTAAT+AGG | + | chr1_1:66798935-66798954 | Msa0037680:intron | 30.0% |
| !! | GAAGGTATTATAGGTGAAAA+GGG | + | chr1_1:66798957-66798976 | Msa0037680:intron | 30.0% |
| TATAGGTGAAAAGGGTTAAA+TGG | + | chr1_1:66798965-66798984 | Msa0037680:intron | 30.0% | |
| AGTTGTTGAATTTCAATGAG+TGG | + | chr1_1:66798998-66799017 | Msa0037680:intron | 30.0% | |
| AATTTCAATGAGTGGATCTA+TGG | + | chr1_1:66799006-66799025 | Msa0037680:intron | 30.0% | |
| GGAAATCACATTTGCAATAT+TGG | + | chr1_1:66799094-66799113 | Msa0037680:intron | 30.0% | |
| AAAATGACTGCTAATGTTGT+AGG | - | chr1_1:66799165-66799184 | None:intergenic | 30.0% | |
| GATACTAAACAACTCAATGT+GGG | - | chr1_1:66799212-66799231 | None:intergenic | 30.0% | |
| TGATACTAAACAACTCAATG+TGG | - | chr1_1:66799213-66799232 | None:intergenic | 30.0% | |
| ! | CTAAAAGGCAAAAGTATGTT+TGG | - | chr1_1:66799318-66799337 | None:intergenic | 30.0% |
| !! | AATTTCTAGAAAGCCTTGTT+CGG | + | chr1_1:66799476-66799495 | Msa0037680:intron | 30.0% |
| TATAAGATGAAGGAGATTAC+TGG | + | chr1_1:66799501-66799520 | Msa0037680:CDS | 30.0% | |
| !! | AGACTATCATAGTTTTGCAA+TGG | + | chr1_1:66799674-66799693 | Msa0037680:intron | 30.0% |
| AAAATTTCAGCAAGCTATTG+CGG | + | chr1_1:66799733-66799752 | Msa0037680:intron | 30.0% | |
| ! | TTGCTAACCTGAATTGTTTT+GGG | + | chr1_1:66800033-66800052 | Msa0037680:intron | 30.0% |
| TGGATCATATTTCAGTAACT+TGG | + | chr1_1:66800103-66800122 | Msa0037680:intron | 30.0% | |
| AAGCTATAGTTATTGCATCA+TGG | + | chr1_1:66800200-66800219 | Msa0037680:intron | 30.0% | |
| CAAGGTAACAACACAATAAA+TGG | - | chr1_1:66800327-66800346 | None:intergenic | 30.0% | |
| ! | CATTTATTGTGTTGTTACCT+TGG | + | chr1_1:66800325-66800344 | Msa0037680:intron | 30.0% |
| AACAAACAACCAATTAGCAA+TGG | - | chr1_1:66800776-66800795 | None:intergenic | 30.0% | |
| ACAAGAGAGAAAAGATAGTG+GGG | - | chr1_1:66798334-66798353 | None:intergenic | 35.0% | |
| GAACAAGAGAGAAAAGATAG+TGG | - | chr1_1:66798336-66798355 | None:intergenic | 35.0% | |
| AGGTTGAGAGCTTAAACAAA+CGG | + | chr1_1:66798657-66798676 | Msa0037680:CDS | 35.0% | |
| !! | GGAAGGTATTATAGGTGAAA+AGG | + | chr1_1:66798956-66798975 | Msa0037680:intron | 35.0% |
| TGTGATTTCCCTACTCTAAA+TGG | - | chr1_1:66799084-66799103 | None:intergenic | 35.0% | |
| AAAATGTGCTACCGCAATTT+AGG | - | chr1_1:66799264-66799283 | None:intergenic | 35.0% | |
| ! | CAAAAGTATGTTTGGATTCG+TGG | - | chr1_1:66799310-66799329 | None:intergenic | 35.0% |
| GCAGGGCATATTAAACTAAA+AGG | - | chr1_1:66799333-66799352 | None:intergenic | 35.0% | |
| ! | AATCCTAGATCAGTTTTGCT+TGG | + | chr1_1:66799403-66799422 | Msa0037680:intron | 35.0% |
| TTCATCTTATACTCCGAACA+AGG | - | chr1_1:66799492-66799511 | None:intergenic | 35.0% | |
| TTGTTCGGAGTATAAGATGA+AGG | + | chr1_1:66799491-66799510 | Msa0037680:CDS | 35.0% | |
| AGTGGAATATTTGTAGCCAA+TGG | + | chr1_1:66799525-66799544 | Msa0037680:CDS | 35.0% | |
| AACCCTTCAGCAAATAAAAC+CGG | + | chr1_1:66799579-66799598 | Msa0037680:CDS | 35.0% | |
| !!! | TTCCGGTTTTATTTGCTGAA+GGG | - | chr1_1:66799584-66799603 | None:intergenic | 35.0% |
| !!! | ATTCCGGTTTTATTTGCTGA+AGG | - | chr1_1:66799585-66799604 | None:intergenic | 35.0% |
| CTTACAAAAAACGCTATACC+TGG | - | chr1_1:66799617-66799636 | None:intergenic | 35.0% | |
| !!! | CAGGTATAGCGTTTTTTGTA+AGG | + | chr1_1:66799615-66799634 | Msa0037680:intron | 35.0% |
| AAATTTCAGCAAGCTATTGC+GGG | + | chr1_1:66799734-66799753 | Msa0037680:intron | 35.0% | |
| ! | TTCAGGTTAGCAACTTATAG+TGG | - | chr1_1:66800026-66800045 | None:intergenic | 35.0% |
| ! | GTTGCTAACCTGAATTGTTT+TGG | + | chr1_1:66800032-66800051 | Msa0037680:intron | 35.0% |
| GTAATCACCCAAAACAATTC+AGG | - | chr1_1:66800043-66800062 | None:intergenic | 35.0% | |
| ! | ATTGTGTTGTTACCTTGGTT+AGG | + | chr1_1:66800330-66800349 | Msa0037680:intron | 35.0% |
| ! | TTGTGTTGTTACCTTGGTTA+GGG | + | chr1_1:66800331-66800350 | Msa0037680:intron | 35.0% |
| !!! | TTCTTTGCTGTTTTCAGAAC+TGG | - | chr1_1:66800388-66800407 | None:intergenic | 35.0% |
| TAACATCTTTGCTGATGGAA+AGG | + | chr1_1:66800525-66800544 | Msa0037680:CDS | 35.0% | |
| !! | TTGCGCTGGTATAATTTGTT+AGG | + | chr1_1:66800605-66800624 | Msa0037680:exon | 35.0% |
| !!! | ACCTTGTATTTCTGGGTTTT+GGG | + | chr1_1:66800705-66800724 | Msa0037680:three_prime_UTR | 35.0% |
| !!! | GTTTTGGGAATTTGCCTTTT+AGG | + | chr1_1:66800720-66800739 | Msa0037680:three_prime_UTR | 35.0% |
| ! | CAATTAGCAATGGTCCTTTT+TGG | - | chr1_1:66800766-66800785 | None:intergenic | 35.0% |
| CAAAAAGGACCATTGCTAAT+TGG | + | chr1_1:66800764-66800783 | Msa0037680:three_prime_UTR | 35.0% | |
| GCTTGCTTAATGAAGTGATT+TGG | + | chr1_1:66800819-66800838 | Msa0037680:three_prime_UTR | 35.0% | |
| TGTTCTTTGGCGTGTGAATA+TGG | + | chr1_1:66798351-66798370 | Msa0037680:exon | 40.0% | |
| CAACTGCAGATCTACTTGTT+TGG | + | chr1_1:66798407-66798426 | Msa0037680:CDS | 40.0% | |
| TGAGAACGAGTAGCAGAATA+AGG | - | chr1_1:66798466-66798485 | None:intergenic | 40.0% | |
| ! | ATTGGTGAATTTTCAGCCGT+CGG | + | chr1_1:66798589-66798608 | Msa0037680:intron | 40.0% |
| TCACATTTGCAATATTGGGC+TGG | + | chr1_1:66799099-66799118 | Msa0037680:intron | 40.0% | |
| CAGTTAATAAAGCAGCAGCA+GGG | - | chr1_1:66799350-66799369 | None:intergenic | 40.0% | |
| ACACCAAGCAAAACTGATCT+AGG | - | chr1_1:66799409-66799428 | None:intergenic | 40.0% | |
| !!! | GTTTTTTGTTCAACGTTGCG+TGG | + | chr1_1:66799427-66799446 | Msa0037680:intron | 40.0% |
| TGGCTTCTTCTGATCTTGTT+TGG | + | chr1_1:66799447-66799466 | Msa0037680:intron | 40.0% | |
| !!! | GGTTTTATTTGCTGAAGGGT+TGG | - | chr1_1:66799580-66799599 | None:intergenic | 40.0% |
| GGAATCAGTCATATCTCCTT+TGG | + | chr1_1:66799755-66799774 | Msa0037680:CDS | 40.0% | |
| TCCAATATGCGAGGAGTAAT+TGG | - | chr1_1:66799962-66799981 | None:intergenic | 40.0% | |
| CTCGCATATTGGAGTTGAAA+GGG | + | chr1_1:66799969-66799988 | Msa0037680:CDS | 40.0% | |
| TGCATACATGACTTTCTCCA+AGG | - | chr1_1:66800003-66800022 | None:intergenic | 40.0% | |
| CTGACAGTTCTGCAAATTTC+TGG | - | chr1_1:66800420-66800439 | None:intergenic | 40.0% | |
| CAGAAATTTGCAGAACTGTC+AGG | + | chr1_1:66800418-66800437 | Msa0037680:CDS | 40.0% | |
| CAAAACTCCGAGAGATAAGT+GGG | + | chr1_1:66800500-66800519 | Msa0037680:CDS | 40.0% | |
| TGTTACTCCCACTTATCTCT+CGG | - | chr1_1:66800510-66800529 | None:intergenic | 40.0% | |
| !!! | GACCTTGTATTTCTGGGTTT+TGG | + | chr1_1:66800704-66800723 | Msa0037680:three_prime_UTR | 40.0% |
| TCCCAAAACCCAGAAATACA+AGG | - | chr1_1:66800709-66800728 | None:intergenic | 40.0% | |
| TTTGGCGTGTGAATATGGAG+AGG | + | chr1_1:66798356-66798375 | Msa0037680:exon | 45.0% | |
| GAATATGGAGAGGAACACAC+CGG | + | chr1_1:66798366-66798385 | Msa0037680:exon | 45.0% | |
| AGATCTGCAGTTGAAGTGTG+TGG | - | chr1_1:66798400-66798419 | None:intergenic | 45.0% | |
| GGAGCTGGAGAATCATTGAT+TGG | - | chr1_1:66798442-66798461 | None:intergenic | 45.0% | |
| GAACGAGTAGCAGAATAAGG+AGG | - | chr1_1:66798463-66798482 | None:intergenic | 45.0% | |
| TTCTGCTACTCGTTCTCATC+AGG | + | chr1_1:66798468-66798487 | Msa0037680:CDS | 45.0% | |
| ! | TGAATTTTCAGCCGTCGGAT+GGG | + | chr1_1:66798594-66798613 | Msa0037680:intron | 45.0% |
| ATCAGTAAGGTGGTGTTTGG+TGG | + | chr1_1:66798617-66798636 | Msa0037680:CDS | 45.0% | |
| TGGTCAGGTTACTGATGAAG+AGG | + | chr1_1:66798637-66798656 | Msa0037680:CDS | 45.0% | |
| GCAGTTAATAAAGCAGCAGC+AGG | - | chr1_1:66799351-66799370 | None:intergenic | 45.0% | |
| ATGAAGGAGATTACTGGCAG+TGG | + | chr1_1:66799507-66799526 | Msa0037680:CDS | 45.0% | |
| TGTAGCCAATGGAGAAGATG+AGG | + | chr1_1:66799536-66799555 | Msa0037680:CDS | 45.0% | |
| TACCTGGTACATGCGAATTC+CGG | - | chr1_1:66799601-66799620 | None:intergenic | 45.0% | |
| !!! | GGCAATGAAGCAGGCTTTTT+TGG | - | chr1_1:66799800-66799819 | None:intergenic | 45.0% |
| GCTTTCTGATGCAAAGTGCA+AGG | + | chr1_1:66799886-66799905 | Msa0037680:CDS | 45.0% | |
| GCCAATTACTCCTCGCATAT+TGG | + | chr1_1:66799958-66799977 | Msa0037680:CDS | 45.0% | |
| CCTTTCAACTCCAATATGCG+AGG | - | chr1_1:66799971-66799990 | None:intergenic | 45.0% | |
| CCTCGCATATTGGAGTTGAA+AGG | + | chr1_1:66799968-66799987 | Msa0037680:CDS | 45.0% | |
| ! | TTGGAGTTGAAAGGGAGCAT+AGG | + | chr1_1:66799977-66799996 | Msa0037680:CDS | 45.0% |
| TGTTACCTTGGTTAGGGTGA+TGG | + | chr1_1:66800337-66800356 | Msa0037680:intron | 45.0% | |
| GAGATCAAGACGCTACTACA+GGG | + | chr1_1:66800359-66800378 | Msa0037680:CDS | 45.0% | |
| AGATCAAGACGCTACTACAG+GGG | + | chr1_1:66800360-66800379 | Msa0037680:CDS | 45.0% | |
| AACGATTTCTCAGCAGCCAA+AGG | - | chr1_1:66800472-66800491 | None:intergenic | 45.0% | |
| CTGCTGAGAAATCGTTGAGT+GGG | + | chr1_1:66800476-66800495 | Msa0037680:CDS | 45.0% | |
| TGCTGAGAAATCGTTGAGTG+GGG | + | chr1_1:66800477-66800496 | Msa0037680:CDS | 45.0% | |
| GCAAAACTCCGAGAGATAAG+TGG | + | chr1_1:66800499-66800518 | Msa0037680:CDS | 45.0% | |
| GGGAGTAACATCTTTGCTGA+TGG | + | chr1_1:66800520-66800539 | Msa0037680:CDS | 45.0% | |
| CATCTTTGCTGATGGAAAGG+CGG | + | chr1_1:66800528-66800547 | Msa0037680:CDS | 45.0% | |
| GAGTCTAGAGACTATCTAGG+CGG | + | chr1_1:66800550-66800569 | Msa0037680:CDS | 45.0% | |
| GAAGTGTGTGGTTTCCTCAC+CGG | - | chr1_1:66798388-66798407 | None:intergenic | 50.0% | |
| GTAGCAGAATAAGGAGGAGC+TGG | - | chr1_1:66798457-66798476 | None:intergenic | 50.0% | |
| ! | GTGAATTTTCAGCCGTCGGA+TGG | + | chr1_1:66798593-66798612 | Msa0037680:intron | 50.0% |
| ACCTTACTGATCCCATCCGA+CGG | - | chr1_1:66798608-66798627 | None:intergenic | 50.0% | |
| GGGATCAGTAAGGTGGTGTT+TGG | + | chr1_1:66798614-66798633 | Msa0037680:CDS | 50.0% | |
| ! | TAAGGTGGTGTTTGGTGGTC+AGG | + | chr1_1:66798622-66798641 | Msa0037680:CDS | 50.0% |
| AACCGGAATTCGCATGTACC+AGG | + | chr1_1:66799596-66799615 | Msa0037680:CDS | 50.0% | |
| CAGTCATATCTCCTTTGGCG+AGG | + | chr1_1:66799760-66799779 | Msa0037680:CDS | 50.0% | |
| AACACTCTCTTCCTCGCCAA+AGG | - | chr1_1:66799774-66799793 | None:intergenic | 50.0% | |
| AAAGCCTGCTTCATTGCCTG+AGG | + | chr1_1:66799802-66799821 | Msa0037680:CDS | 50.0% | |
| GCAAAGTGCAAGGAGCTTAG+TGG | + | chr1_1:66799896-66799915 | Msa0037680:CDS | 50.0% | |
| CACCACCAGAAATCAAGCCT+CGG | + | chr1_1:66799936-66799955 | Msa0037680:CDS | 50.0% | |
| ATTGGCCGAGGCTTGATTTC+TGG | - | chr1_1:66799944-66799963 | None:intergenic | 50.0% | |
| ! | TTGAAAGGGAGCATAGGCCT+TGG | + | chr1_1:66799983-66800002 | Msa0037680:CDS | 50.0% |
| GATCTCCATCACCCTAACCA+AGG | - | chr1_1:66800345-66800364 | None:intergenic | 50.0% | |
| GGAGATCAAGACGCTACTAC+AGG | + | chr1_1:66800358-66800377 | Msa0037680:CDS | 50.0% | |
| GATTTCTCAGCAGCCAAAGG+CGG | - | chr1_1:66800469-66800488 | None:intergenic | 50.0% | |
| GCTGCTGAGAAATCGTTGAG+TGG | + | chr1_1:66800475-66800494 | Msa0037680:CDS | 50.0% | |
| GCGGAGTCTAGAGACTATCT+AGG | + | chr1_1:66800547-66800566 | Msa0037680:CDS | 50.0% | |
| GTCGGATGGGATCAGTAAGG+TGG | + | chr1_1:66798607-66798626 | Msa0037680:CDS | 55.0% | |
| TGGGGCCTCATCTTCTCCAT+TGG | - | chr1_1:66799544-66799563 | None:intergenic | 55.0% | |
| GCGTGAGCTCAGTGGAACTA+TGG | + | chr1_1:66799835-66799854 | Msa0037680:CDS | 55.0% | |
| !! | CGAGGCTTGATTTCTGGTGG+TGG | - | chr1_1:66799938-66799957 | None:intergenic | 55.0% |
| ATGCGAGGAGTAATTGGCCG+AGG | - | chr1_1:66799956-66799975 | None:intergenic | 55.0% | |
| TAAAGGCGACTCTCCGCCTT+TGG | + | chr1_1:66800453-66800472 | Msa0037680:CDS | 55.0% | |
| GAGACTATCTAGGCGGCGTA+CGG | + | chr1_1:66800557-66800576 | Msa0037680:CDS | 55.0% | |
| TGGAGAGGAACACACCGGTG+AGG | + | chr1_1:66798371-66798390 | Msa0037680:CDS | 60.0% | |
| GCCGTCGGATGGGATCAGTA+AGG | + | chr1_1:66798604-66798623 | Msa0037680:intron | 60.0% | |
| TGGAGAAGATGAGGCCCCAG+AGG | + | chr1_1:66799545-66799564 | Msa0037680:CDS | 60.0% | |
| GAAGATGAGGCCCCAGAGGA+TGG | + | chr1_1:66799549-66799568 | Msa0037680:CDS | 60.0% | |
| GTTGGCACTGCCATCCTCTG+GGG | - | chr1_1:66799562-66799581 | None:intergenic | 60.0% | |
| GGTTGGCACTGCCATCCTCT+GGG | - | chr1_1:66799563-66799582 | None:intergenic | 60.0% | |
| GCCTGCTTCATTGCCTGAGG+TGG | + | chr1_1:66799805-66799824 | Msa0037680:CDS | 60.0% | |
| GCCACCTCAGGCAATGAAGC+AGG | - | chr1_1:66799809-66799828 | None:intergenic | 60.0% | |
| TCCACTGAGCTCACGCTGCT+TGG | - | chr1_1:66799831-66799850 | None:intergenic | 60.0% | |
| ! | GGCCGAGGCTTGATTTCTGG+TGG | - | chr1_1:66799941-66799960 | None:intergenic | 60.0% |
| ! | GGGTTGGCACTGCCATCCTC+TGG | - | chr1_1:66799564-66799583 | None:intergenic | 65.0% |
| TCACGCTGCTTGGCCACCTC+AGG | - | chr1_1:66799821-66799840 | None:intergenic | 65.0% | |
| GCCAAGCAGCGTGAGCTCAG+TGG | + | chr1_1:66799827-66799846 | Msa0037680:CDS | 65.0% | |
| ATGCTGCTCTCGCCACCAGG+CGG | - | chr1_1:66800586-66800605 | None:intergenic | 65.0% | |
| GCAATGCTGCTCTCGCCACC+AGG | - | chr1_1:66800589-66800608 | None:intergenic | 65.0% | |
| TGGCGAGAGCAGCATTGCGC+TGG | + | chr1_1:66800591-66800610 | Msa0037680:CDS | 65.0% | |
| GGCGTACGGAAGCCGCCTGG+TGG | + | chr1_1:66800571-66800590 | Msa0037680:CDS | 75.0% | |
| ! | GGCGGCGTACGGAAGCCGCC+TGG | + | chr1_1:66800568-66800587 | Msa0037680:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 66798125 | 66800873 | 66798125 | ID=Msa0037680;Name=Msa0037680 |
| chr1_1 | mRNA | 66798125 | 66800873 | 66798125 | ID=Msa0037680-mRNA-1;Parent=Msa0037680;Name=Msa0037680-mRNA-1;_AED=0.02;_eAED=0.02;_QI=245|1|1|1|1|1|5|255|288 |
| chr1_1 | exon | 66798125 | 66798489 | 66798125 | ID=Msa0037680-mRNA-1:exon:21623;Parent=Msa0037680-mRNA-1 |
| chr1_1 | exon | 66798605 | 66798678 | 66798605 | ID=Msa0037680-mRNA-1:exon:21624;Parent=Msa0037680-mRNA-1 |
| chr1_1 | exon | 66799485 | 66799617 | 66799485 | ID=Msa0037680-mRNA-1:exon:21625;Parent=Msa0037680-mRNA-1 |
| chr1_1 | exon | 66799743 | 66800015 | 66799743 | ID=Msa0037680-mRNA-1:exon:21626;Parent=Msa0037680-mRNA-1 |
| chr1_1 | exon | 66800352 | 66800873 | 66800352 | ID=Msa0037680-mRNA-1:exon:21627;Parent=Msa0037680-mRNA-1 |
| chr1_1 | five_prime_UTR | 66798125 | 66798369 | 66798125 | ID=Msa0037680-mRNA-1:five_prime_utr;Parent=Msa0037680-mRNA-1 |
| chr1_1 | CDS | 66798370 | 66798489 | 66798370 | ID=Msa0037680-mRNA-1:cds;Parent=Msa0037680-mRNA-1 |
| chr1_1 | CDS | 66798605 | 66798678 | 66798605 | ID=Msa0037680-mRNA-1:cds;Parent=Msa0037680-mRNA-1 |
| chr1_1 | CDS | 66799485 | 66799617 | 66799485 | ID=Msa0037680-mRNA-1:cds;Parent=Msa0037680-mRNA-1 |
| chr1_1 | CDS | 66799743 | 66800015 | 66799743 | ID=Msa0037680-mRNA-1:cds;Parent=Msa0037680-mRNA-1 |
| chr1_1 | CDS | 66800352 | 66800618 | 66800352 | ID=Msa0037680-mRNA-1:cds;Parent=Msa0037680-mRNA-1 |
| chr1_1 | three_prime_UTR | 66800619 | 66800873 | 66800619 | ID=Msa0037680-mRNA-1:three_prime_utr;Parent=Msa0037680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
