AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1380890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380890 MtrunA17_Chr4g0048921 91.608 572 46 2 1 572 1 570 0.0 1070
Msa1380890 MtrunA17_Chr4g0048911 48.824 510 247 8 66 569 55 556 9.64e-168 488
Msa1380890 MtrunA17_Chr3g0108991 44.016 493 266 6 82 567 23 512 1.49e-142 422
Msa1380890 MtrunA17_Chr3g0108951 44.016 493 266 6 82 567 23 512 1.49e-142 422
Msa1380890 MtrunA17_Chr2g0280581 44.242 495 263 9 82 567 27 517 8.00e-142 420
Msa1380890 MtrunA17_Chr3g0099031 44.334 503 264 9 75 567 16 512 8.27e-142 420
Msa1380890 MtrunA17_Chr3g0108971 43.878 490 265 6 85 567 1 487 2.42e-141 418
Msa1380890 MtrunA17_Chr3g0105691 44.016 493 266 6 82 567 56 545 3.06e-141 420
Msa1380890 MtrunA17_Chr3g0108941 43.117 494 270 6 82 567 23 513 1.49e-140 417
Msa1380890 MtrunA17_Chr3g0109031 43.002 493 271 6 82 567 23 512 4.73e-140 416
Msa1380890 MtrunA17_Chr6g0477111 43.469 490 267 6 85 567 1 487 1.12e-139 414
Msa1380890 MtrunA17_Chr3g0109011 43.265 490 268 6 85 567 1 487 1.18e-139 414
Msa1380890 MtrunA17_Chr3g0109021 43.205 493 270 6 82 567 23 512 1.19e-139 415
Msa1380890 MtrunA17_Chr3g0109001 42.915 494 271 6 82 567 23 513 5.06e-139 413
Msa1380890 MtrunA17_Chr3g0108981 42.770 491 270 6 85 567 1 488 4.00e-137 407
Msa1380890 MtrunA17_Chr3g0108961 42.770 491 270 6 85 567 1 488 4.00e-137 407
Msa1380890 MtrunA17_Chr6g0477121 45.131 421 224 5 143 559 5 422 5.55e-125 374
Msa1380890 MtrunA17_Chr2g0323131 36.965 514 299 7 65 568 62 560 2.51e-114 351
Msa1380890 MtrunA17_Chr2g0323151 37.759 482 291 4 87 568 3 475 2.38e-110 338
Msa1380890 MtrunA17_Chr4g0042111 35.394 469 295 4 90 555 79 542 3.41e-95 301
Msa1380890 MtrunA17_Chr3g0082691 33.205 518 333 5 63 571 38 551 6.04e-94 298
Msa1380890 MtrunA17_Chr2g0310331 34.766 512 321 7 66 571 80 584 9.76e-94 298
Msa1380890 MtrunA17_Chr4g0023911 34.369 483 310 4 78 557 85 563 9.38e-92 293
Msa1380890 MtrunA17_Chr7g0236991 32.866 499 325 4 63 555 39 533 1.79e-90 289
Msa1380890 MtrunA17_Chr7g0237001 32.665 499 326 4 63 555 39 533 9.77e-90 287
Msa1380890 MtrunA17_Chr7g0237041 32.665 499 326 4 63 555 39 533 9.77e-90 287
Msa1380890 MtrunA17_Chr7g0237081 32.665 499 326 4 63 555 39 533 9.77e-90 287
Msa1380890 MtrunA17_Chr7g0237051 32.665 499 326 4 63 555 39 533 9.77e-90 287
Msa1380890 MtrunA17_Chr7g0236961 33.403 476 311 3 82 555 7 478 8.17e-89 283
Msa1380890 MtrunA17_Chr5g0431651 32.039 515 336 5 67 571 40 550 3.86e-88 283
Msa1380890 MtrunA17_Chr7g0237011 33.193 476 312 3 82 555 7 478 6.64e-88 280
Msa1380890 MtrunA17_Chr6g0465441 31.660 518 340 8 63 571 39 551 7.24e-88 282
Msa1380890 MtrunA17_Chr3g0105071 31.792 519 341 5 63 572 42 556 5.64e-87 280
Msa1380890 MtrunA17_Chr5g0425371 32.692 520 332 8 63 571 39 551 1.48e-86 279
Msa1380890 MtrunA17_Chr6g0451711 31.407 519 341 6 63 571 42 555 1.88e-86 278
Msa1380890 MtrunA17_Chr4g0024691 31.115 511 340 5 69 571 53 559 1.48e-85 276
Msa1380890 MtrunA17_Chr5g0431571 31.712 514 338 5 67 571 38 547 1.32e-84 273
Msa1380890 MtrunA17_Chr8g0357411 33.266 496 316 9 82 571 101 587 7.80e-84 273
Msa1380890 MtrunA17_Chr2g0319051 32.617 512 325 9 71 571 10 512 1.17e-81 265
Msa1380890 MtrunA17_Chr8g0336181 32.000 525 328 11 65 571 41 554 4.51e-78 256
Msa1380890 MtrunA17_Chr6g0466051 29.207 517 354 5 63 571 39 551 5.57e-78 256
Msa1380890 MtrunA17_Chr6g0465851 29.014 517 355 5 63 571 4 516 1.63e-77 254
Msa1380890 MtrunA17_Chr6g0465911 29.014 517 355 5 63 571 39 551 3.89e-77 254
Msa1380890 MtrunA17_Chr2g0310401 34.450 418 267 5 145 560 5 417 5.10e-75 245
Msa1380890 MtrunA17_Chr2g0319041 29.714 525 345 11 63 571 39 555 3.52e-74 246
Msa1380890 MtrunA17_Chr7g0236971 32.987 385 254 2 171 555 1 381 1.10e-68 227
Msa1380890 MtrunA17_Chr4g0008621 33.850 387 232 8 63 433 47 425 5.59e-64 216
Msa1380890 MtrunA17_Chr7g0236951 37.542 301 185 2 82 380 7 306 1.10e-61 206
Msa1380890 MtrunA17_Chr7g0237031 37.209 301 186 2 82 380 7 306 4.92e-61 204
Msa1380890 MtrunA17_Chr6g0465931 34.700 317 200 3 63 373 4 319 1.70e-56 193
Msa1380890 MtrunA17_Chr6g0466111 34.385 317 201 3 63 373 4 319 1.07e-55 191
Msa1380890 MtrunA17_Chr6g0465981 34.385 317 201 3 63 373 39 354 3.20e-55 191
Msa1380890 MtrunA17_Chr6g0465871 34.385 317 201 3 63 373 39 354 3.20e-55 191
Msa1380890 MtrunA17_Chr6g0466081 34.385 317 201 3 63 373 39 354 3.20e-55 191
Msa1380890 MtrunA17_Chr8g0357231 35.878 262 160 5 313 571 1 257 5.86e-50 173
Msa1380890 MtrunA17_Chr7g0217361 32.979 282 184 3 268 548 6 283 2.56e-46 165
Msa1380890 MtrunA17_Chr2g0319071 28.049 492 296 15 88 571 46 487 5.02e-44 163
Msa1380890 MtrunA17_Chr5g0445511 37.156 218 128 4 167 380 2 214 1.14e-41 150
Msa1380890 MtrunA17_Chr3g0101681 24.760 521 340 13 88 572 277 781 4.99e-39 152
Msa1380890 MtrunA17_Chr2g0310121 23.483 511 359 10 88 572 276 780 2.49e-36 144
Msa1380890 MtrunA17_Chr2g0319081 28.788 330 211 9 246 571 116 425 1.20e-35 139
Msa1380890 MtrunA17_Chr7g0237061 28.395 243 147 2 313 555 2 217 2.58e-30 119
Msa1380890 MtrunA17_Chr7g0237071 35.204 196 125 1 82 275 7 202 2.13e-28 113
Msa1380890 MtrunA17_Chr6g0466031 24.904 261 190 3 313 571 2 258 3.34e-28 113
Msa1380890 MtrunA17_Chr2g0281651 26.800 250 174 5 250 497 45 287 1.63e-21 97.1
Msa1380890 MtrunA17_Chr7g0218001 27.376 263 159 8 88 320 347 607 5.16e-20 94.4
Msa1380890 MtrunA17_Chr8g0357221 32.812 192 126 2 82 272 101 290 8.19e-20 90.1
Msa1380890 MtrunA17_Chr6g0466021 35.971 139 83 2 63 195 39 177 1.79e-19 87.0
Msa1380890 MtrunA17_Chr5g0445501 28.324 173 119 2 401 571 1 170 6.18e-19 84.7
Msa1380890 MtrunA17_Chr7g0259881 25.185 270 172 8 88 328 230 498 7.23e-19 90.5
Msa1380890 MtrunA17_Chr7g0217351 30.476 210 134 6 70 273 70 273 9.49e-19 87.0
Msa1380890 MtrunA17_Chr7g0237021 27.742 155 109 1 401 555 1 152 1.69e-17 80.5
Msa1380890 MtrunA17_Chr7g0236941 27.742 155 109 1 401 555 1 152 1.69e-17 80.5
Msa1380890 MtrunA17_Chr7g0233861 28.986 138 89 1 208 345 30 158 2.49e-15 74.3
Msa1380890 MtrunA17_Chr6g0465881 22.543 173 129 2 401 571 1 170 2.06e-13 68.6
Msa1380890 MtrunA17_Chr6g0465941 22.543 173 129 2 401 571 1 170 2.59e-13 68.6
Msa1380890 MtrunA17_Chr6g0466121 22.543 173 129 2 401 571 1 170 2.59e-13 68.6
Msa1380890 MtrunA17_Chr6g0465991 22.543 173 129 2 401 571 1 170 2.59e-13 68.6
Msa1380890 MtrunA17_Chr6g0466091 22.543 173 129 2 401 571 1 170 2.59e-13 68.6
Msa1380890 MtrunA17_Chr7g0218041 26.250 240 150 7 133 347 1 238 8.02e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380890 AT1G61680.1 45.709 571 289 10 6 567 11 569 3.09e-160 469
Msa1380890 AT1G61680.2 45.709 571 282 11 6 567 11 562 1.53e-157 462
Msa1380890 AT4G16730.1 33.397 524 323 8 67 571 21 537 9.39e-93 295
Msa1380890 AT4G16730.2 33.333 498 309 7 90 571 1 491 4.48e-90 286
Msa1380890 AT4G16740.1 34.180 512 294 13 68 557 55 545 5.41e-86 278
Msa1380890 AT3G25820.1 31.472 591 358 13 4 571 26 592 3.11e-84 274
Msa1380890 AT3G25830.1 31.472 591 358 13 4 571 26 592 3.11e-84 274
Msa1380890 AT2G24210.1 30.944 572 352 14 18 571 42 588 3.43e-82 269
Msa1380890 AT3G25810.1 30.648 509 326 10 82 571 95 595 1.04e-76 254
Msa1380890 AT5G23960.1 28.599 514 359 4 63 571 35 545 4.69e-72 241
Msa1380890 AT5G23960.2 28.571 511 357 4 65 571 37 543 1.67e-71 239
Msa1380890 AT1G70080.1 28.429 503 342 10 81 571 113 609 9.10e-64 220
Msa1380890 AT3G14520.1 26.369 493 350 7 72 557 100 586 4.55e-56 199
Msa1380890 AT3G14490.1 26.984 504 352 7 64 557 85 582 2.24e-54 194
Msa1380890 AT3G25820.2 30.969 423 255 9 4 410 26 427 4.02e-54 190
Msa1380890 AT3G14540.1 25.631 515 360 8 60 557 75 583 7.14e-54 193
Msa1380890 AT4G16740.2 34.195 348 197 10 65 390 52 389 1.09e-52 185
Msa1380890 AT3G29410.2 27.521 476 327 8 90 557 15 480 1.33e-52 187
Msa1380890 AT3G29410.1 27.521 476 327 8 90 557 120 585 1.05e-51 187
Msa1380890 AT1G31950.3 25.738 474 341 5 90 557 121 589 3.98e-51 186
Msa1380890 AT1G31950.1 25.738 474 341 5 90 557 120 588 4.16e-51 186
Msa1380890 AT4G13300.1 25.919 517 367 6 67 571 40 552 2.03e-49 180
Msa1380890 AT3G14540.2 25.986 431 302 5 60 475 75 503 7.94e-49 177
Msa1380890 AT1G33750.1 24.606 508 370 6 69 568 96 598 5.74e-48 177
Msa1380890 AT5G44630.1 26.962 497 345 8 86 572 68 556 8.75e-48 175
Msa1380890 AT4G20230.1 25.382 524 374 8 59 569 82 601 1.73e-47 175
Msa1380890 AT4G15870.1 24.811 528 364 9 59 571 87 596 1.85e-47 175
Msa1380890 AT4G20230.2 25.382 524 374 8 59 569 94 613 2.16e-47 175
Msa1380890 AT4G13280.2 26.834 477 339 5 101 571 80 552 1.65e-46 172
Msa1380890 AT4G20200.1 25.859 495 359 4 82 571 111 602 5.79e-46 171
Msa1380890 AT1G31950.2 25.806 403 293 3 90 487 121 522 2.01e-45 168
Msa1380890 AT3G29190.1 24.213 508 373 4 59 557 79 583 2.19e-44 167
Msa1380890 AT1G66020.1 26.046 526 371 8 59 571 76 596 3.97e-42 160
Msa1380890 AT1G48800.1 25.940 532 365 14 57 569 81 602 4.29e-42 160
Msa1380890 AT4G16740.4 32.440 336 194 9 65 382 52 372 6.03e-42 155
Msa1380890 AT4G16740.3 32.440 336 194 9 65 382 52 372 6.03e-42 155
Msa1380890 AT4G20210.1 24.860 535 379 10 42 567 74 594 1.07e-40 156
Msa1380890 AT3G32030.1 23.414 457 343 4 90 543 119 571 2.49e-39 152
Msa1380890 AT2G23230.2 25.800 500 351 11 82 569 105 596 9.29e-39 150
Msa1380890 AT5G48110.1 29.358 327 222 6 247 571 18 337 1.23e-38 145
Msa1380890 AT4G13280.1 25.996 477 313 7 101 571 80 522 1.54e-38 149
Msa1380890 AT1G48820.1 23.909 527 348 11 53 569 77 560 1.71e-38 149
Msa1380890 AT3G25820.4 30.168 358 214 8 4 345 26 363 8.47e-38 144
Msa1380890 AT3G25820.3 30.168 358 214 8 4 345 26 363 8.47e-38 144
Msa1380890 AT2G23230.1 25.651 499 348 11 82 569 105 591 9.41e-38 147
Msa1380890 AT3G29110.1 24.381 525 381 8 59 571 75 595 2.02e-37 147
Msa1380890 AT1G66020.2 26.498 317 224 3 59 366 76 392 2.62e-29 120
Msa1380890 AT1G79460.1 23.619 525 338 14 88 571 275 777 1.87e-25 111
Msa1380890 AT1G61120.1 25.000 380 247 8 128 485 333 696 6.97e-23 103
Msa1380890 AT4G02780.1 28.571 266 158 9 88 323 332 595 7.83e-18 87.8

Find 142 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATGCTTCTTATATATTT+TGG 0.063401 tig0020408:+107799 None:intergenic
CTTCGACTTTGGGATGATTT+AGG 0.178417 tig0020408:-107416 Msa1380890:CDS
ATGACCACATGTACCATTTA+AGG 0.184226 tig0020408:+108139 None:intergenic
GGTATTGGGATTAATAATTT+TGG 0.184662 tig0020408:+106482 None:intergenic
ATTACATGAAAACATGTTTC+AGG 0.215235 tig0020408:-107853 Msa1380890:CDS
CTGCCACAATTCTTCGACTT+TGG 0.232538 tig0020408:-107427 Msa1380890:CDS
CAAAGTGGTAATCAATATTT+AGG 0.236989 tig0020408:+109176 None:intergenic
AGACCTTTGTGAATGCTTTA+TGG 0.251154 tig0020408:+106622 None:intergenic
TGTTCACTGAAGTTGTTTCT+AGG 0.259492 tig0020408:-107996 Msa1380890:intron
TATGAAAGAAGTTGCGAAAA+TGG 0.272045 tig0020408:-108531 Msa1380890:CDS
TGCCACAATTCTTCGACTTT+GGG 0.273382 tig0020408:-107426 Msa1380890:CDS
CATATTGGCTAATGGGTATT+GGG 0.275028 tig0020408:+106468 None:intergenic
CCTTTCTAGTTGAAGCAAAA+TGG 0.291776 tig0020408:-107613 Msa1380890:CDS
TATTCCTTCATATTGGCTAA+TGG 0.291833 tig0020408:+106460 None:intergenic
GATGATAAGCACTCCCTTCC+TGG 0.293520 tig0020408:-106558 Msa1380890:CDS
TAGCGACATATTGTCTTCTT+AGG 0.299306 tig0020408:+109134 None:intergenic
ATTATGTAGATTAAAGATAT+TGG 0.303530 tig0020408:+108063 None:intergenic
GAAGCAAAATGGTTTGGTTC+AGG 0.309836 tig0020408:-107602 Msa1380890:CDS
TCTTTCGAAGAGAGTCTTTA+GGG 0.310663 tig0020408:+107771 None:intergenic
CTAGAAACCAGCCCCTTAAA+TGG 0.310744 tig0020408:-108152 Msa1380890:CDS
ATTGAGTTATTCCTTCATAT+TGG 0.328311 tig0020408:+106453 None:intergenic
TTTAAGTATTCTTCAGCATT+TGG 0.333715 tig0020408:+107572 None:intergenic
GTCAAATCCGCTAATATGTT+TGG 0.334467 tig0020408:-106350 Msa1380890:three_prime_UTR
TTGTGAATGCTTTATGGAAA+TGG 0.335415 tig0020408:+106628 None:intergenic
ATTCCTTCATATTGGCTAAT+GGG 0.336409 tig0020408:+106461 None:intergenic
TGTGGCAGGGGCGGAAATAA+TGG 0.340825 tig0020408:+107442 None:intergenic
TATGAAGGAATAACTCAATA+GGG 0.358662 tig0020408:-106449 Msa1380890:three_prime_UTR
TCATATTGGCTAATGGGTAT+TGG 0.362384 tig0020408:+106467 None:intergenic
ATATGAAGGAATAACTCAAT+AGG 0.382633 tig0020408:-106450 Msa1380890:three_prime_UTR
CTAGTTGAAGCAAAATGGTT+TGG 0.387597 tig0020408:-107608 Msa1380890:CDS
GTCTTTCGAAGAGAGTCTTT+AGG 0.392280 tig0020408:+107770 None:intergenic
AGGGGCTGGTTTCTAGCATA+TGG 0.394011 tig0020408:+108159 None:intergenic
TATAGCACAAATGCATGGTT+TGG 0.394113 tig0020408:-108557 Msa1380890:CDS
TTCACAGCTAGAAATTTCTA+TGG 0.410766 tig0020408:-108587 Msa1380890:CDS
TTCACGAAGCTAAGTTTGTA+AGG 0.412343 tig0020408:-108649 Msa1380890:CDS
TGACCACATGTACCATTTAA+GGG 0.423595 tig0020408:+108140 None:intergenic
GCTGAAGAATACTTAAAGAA+TGG 0.428187 tig0020408:-107566 Msa1380890:CDS
TTTGTGAAAAGGATACTCTA+AGG 0.428411 tig0020408:+108622 None:intergenic
TAAATGGTACATGTGGTCAT+TGG 0.428916 tig0020408:-108136 Msa1380890:CDS
TGTAGATGGTGGAGAGAACT+TGG 0.441935 tig0020408:-108198 Msa1380890:intron
CTGAAGAATACTTAAAGAAT+GGG 0.442910 tig0020408:-107565 Msa1380890:CDS
ATTTAGCAGGAAGATCCTTA+AGG 0.443162 tig0020408:-108693 Msa1380890:CDS
TTTGGGTAAAGGATTAACTA+AGG 0.443181 tig0020408:-107495 Msa1380890:CDS
TTTGGCACGCCTTGTGCTGA+AGG 0.448254 tig0020408:-106268 Msa1380890:three_prime_UTR
ATGAGACCGCACTTCACTTC+AGG 0.453303 tig0020408:-109078 Msa1380890:CDS
GCTGCAAGGCTTACACCATC+AGG 0.453407 tig0020408:-108498 Msa1380890:CDS
ATGGGATATTGACACAGATA+TGG 0.458966 tig0020408:-107888 Msa1380890:CDS
CAAGTATGTCTTCCCCTGCC+AGG 0.463054 tig0020408:+108729 None:intergenic
ATTCTTTCCTCAGATAAAGT+AGG 0.467948 tig0020408:+108099 None:intergenic
TCAAATCCGCTAATATGTTT+GGG 0.468448 tig0020408:-106349 Msa1380890:three_prime_UTR
CTCTGGAGTGCATATTGTGC+TGG 0.472322 tig0020408:-107534 Msa1380890:CDS
TGTGAATGCTTTATGGAAAT+GGG 0.472761 tig0020408:+106629 None:intergenic
TGAGAAAGTTGTGCAATTGT+TGG 0.473300 tig0020408:+109508 None:intergenic
CACTCCCTTCCTGGGCTAGA+GGG 0.473788 tig0020408:-106549 Msa1380890:CDS
GAAAATCAACAAGGAAATGA+TGG 0.476240 tig0020408:-106780 Msa1380890:CDS
GCCTCGCATCTAAACCTGGC+AGG 0.477164 tig0020408:-108743 Msa1380890:CDS
GCAATTGTTGGGACGATTTG+AGG 0.478213 tig0020408:+109520 None:intergenic
TCCAAAATATATAAGAAGCA+TGG 0.481912 tig0020408:-107800 Msa1380890:CDS
TTACATGAAAACATGTTTCA+GGG 0.487840 tig0020408:-107852 Msa1380890:CDS
CTCTTCACATTGCTAACAAG+TGG 0.489348 tig0020408:-109459 Msa1380890:CDS
GAGAAAGTTGTGCAATTGTT+GGG 0.490482 tig0020408:+109509 None:intergenic
AAATGGTACATGTGGTCATT+GGG 0.490912 tig0020408:-108135 Msa1380890:CDS
GTTCATTTGTTAGATCATAG+AGG 0.495017 tig0020408:+107828 None:intergenic
AAGCAAAATGGTTTGGTTCA+GGG 0.495976 tig0020408:-107601 Msa1380890:CDS
CAAAGTCGAAGAATTGTGGC+AGG 0.496180 tig0020408:+107428 None:intergenic
CTCACTCAATCTTGCAAGGA+TGG 0.499444 tig0020408:-106601 Msa1380890:CDS
GTGTCTAATGATGGACCAAC+CGG 0.500032 tig0020408:-106745 Msa1380890:CDS
AAACTAGGTGAAAATATCAA+TGG 0.502965 tig0020408:-108785 Msa1380890:CDS
ATGAAGCTGGAAAATTTAGC+AGG 0.503149 tig0020408:-108706 Msa1380890:CDS
ACATGTACCATTTAAGGGGC+TGG 0.504728 tig0020408:+108145 None:intergenic
GTTCAATTTCTTCTTCAAAG+TGG 0.514024 tig0020408:+109161 None:intergenic
CCGCTAATATGTTTGGGTAT+CGG 0.515981 tig0020408:-106343 Msa1380890:three_prime_UTR
AAGAATGGGATAGTAAGCTC+TGG 0.518549 tig0020408:-107551 Msa1380890:CDS
GTTGGTGAAAATTCACTCAA+AGG 0.524144 tig0020408:-109226 Msa1380890:CDS
CCAAAATATATAAGAAGCAT+GGG 0.524424 tig0020408:-107799 Msa1380890:CDS
GCATTAATGTTGAAGAAGAA+AGG 0.527443 tig0020408:-109435 Msa1380890:CDS
CCCTGCCAGGTTTAGATGCG+AGG 0.529393 tig0020408:+108742 None:intergenic
ATCAATATTTAGGCGCTGCA+TGG 0.529573 tig0020408:+109186 None:intergenic
TGAATAAAATATCCGATGCA+TGG 0.532850 tig0020408:-106683 Msa1380890:CDS
TGAAGCCTCGCATCTAAACC+TGG 0.533102 tig0020408:-108747 Msa1380890:CDS
ATGATAAGCACTCCCTTCCT+GGG 0.538683 tig0020408:-106557 Msa1380890:CDS
GTATATTCATTCCTTTGCCA+TGG 0.540974 tig0020408:-109578 Msa1380890:exon
CAAAGAGACACTCTTGGTTG+AGG 0.541785 tig0020408:+106655 None:intergenic
TTGGCACGCCTTGTGCTGAA+GGG 0.544809 tig0020408:-106267 Msa1380890:three_prime_UTR
TCATCATAACTATACATCAA+TGG 0.553674 tig0020408:+106576 None:intergenic
ATACGTGAAGTGTCTAATGA+TGG 0.556244 tig0020408:-106754 Msa1380890:CDS
CCGATACCCAAACATATTAG+CGG 0.557150 tig0020408:+106343 None:intergenic
GCACTCCCTTCCTGGGCTAG+AGG 0.557886 tig0020408:-106550 Msa1380890:CDS
CTTCTTGTACAATAATACTC+CGG 0.561255 tig0020408:+106726 None:intergenic
CCTCGCATCTAAACCTGGCA+GGG 0.562204 tig0020408:-108742 Msa1380890:CDS
GAAGACATACTTGATGAAGC+TGG 0.565437 tig0020408:-108719 Msa1380890:CDS
ATCCCAAAGTCGAAGAATTG+TGG 0.568131 tig0020408:+107424 None:intergenic
CTTTATCATAAAGCAAGGAA+TGG 0.568777 tig0020408:+106520 None:intergenic
CAAGGTCACTTTGTTCCCGC+AGG 0.569400 tig0020408:-109043 Msa1380890:intron
TTTGAGGTTTCAAAGAGGAA+AGG 0.569570 tig0020408:+109536 None:intergenic
CTCGCATCTAAACCTGGCAG+GGG 0.571060 tig0020408:-108741 Msa1380890:CDS
CAAATGCAGTGCCATGGCAA+AGG 0.571735 tig0020408:+109567 None:intergenic
GAAAAGTTTGATCCAAAACT+AGG 0.573193 tig0020408:-108800 Msa1380890:CDS
ATACCCATTAGCCAATATGA+AGG 0.575623 tig0020408:-106464 Msa1380890:three_prime_UTR
CAGGGGCGGAAATAATGGAT+AGG 0.578243 tig0020408:+107447 None:intergenic
TGGACATAACCCTCTAGCCC+AGG 0.581943 tig0020408:+106540 None:intergenic
AAATTTCTAGCTGTGAACAT+TGG 0.584942 tig0020408:+108593 None:intergenic
ATGGATTTCAGTTTGCTGCA+AGG 0.586908 tig0020408:-108512 Msa1380890:CDS
ATTTATATAGCACAAATGCA+TGG 0.589084 tig0020408:-108562 Msa1380890:CDS
TAAAGACTCTCTTCGAAAGA+CGG 0.589563 tig0020408:-107768 Msa1380890:intron
AGGTCTCACTCAATCTTGCA+AGG 0.596435 tig0020408:-106605 Msa1380890:CDS
AATATATAAGAAGCATGGGT+GGG 0.597265 tig0020408:-107795 Msa1380890:CDS
GTGGTCATTGGGATGCCTCA+CGG 0.597557 tig0020408:-108124 Msa1380890:CDS
TAAGGAAAATGTTCATACAA+TGG 0.597774 tig0020408:-107477 Msa1380890:CDS
TCGAAGAATTGTGGCAGGGG+CGG 0.597807 tig0020408:+107433 None:intergenic
AAGTCGAAGAATTGTGGCAG+GGG 0.600683 tig0020408:+107430 None:intergenic
AAATATATAAGAAGCATGGG+TGG 0.602804 tig0020408:-107796 Msa1380890:CDS
CATAACCCTCTAGCCCAGGA+AGG 0.603462 tig0020408:+106544 None:intergenic
CACGGATCCTACTTTATCTG+AGG 0.604127 tig0020408:-108106 Msa1380890:CDS
AGGGGCGGAAATAATGGATA+GGG 0.604700 tig0020408:+107448 None:intergenic
GACCACATGTACCATTTAAG+GGG 0.604906 tig0020408:+108141 None:intergenic
AATATACGTAAGTCAAGTAG+TGG 0.607241 tig0020408:+109594 None:intergenic
TTGTGCTGAAGGGATTGCTG+TGG 0.608283 tig0020408:-106257 Msa1380890:three_prime_UTR
GGGTATCAAAGAGACACTCT+TGG 0.612403 tig0020408:+106649 None:intergenic
ACAGCAATCCCTTCAGCACA+AGG 0.613899 tig0020408:+106259 None:intergenic
ATGAAGGAATAACTCAATAG+GGG 0.613993 tig0020408:-106448 Msa1380890:three_prime_UTR
AAGCATGAACTTAGAAACGT+TGG 0.614659 tig0020408:-109244 Msa1380890:CDS
CAATATGTCGCTAGTGCTTG+TGG 0.614746 tig0020408:-109124 Msa1380890:CDS
AAATTTGAACAATCTCCTGA+TGG 0.624669 tig0020408:+108483 None:intergenic
GTTTAACAAGTTCACTAACA+AGG 0.624782 tig0020408:-108825 Msa1380890:CDS
ATAACCCTCTAGCCCAGGAA+GGG 0.629515 tig0020408:+106545 None:intergenic
GGTTTGGGTATCAGTTGTCG+TGG 0.630699 tig0020408:-106372 Msa1380890:three_prime_UTR
AGCCCCTTAAATGGTACATG+TGG 0.636992 tig0020408:-108143 Msa1380890:CDS
TAATCATTCTGAGAAACTTG+AGG 0.638838 tig0020408:-109272 Msa1380890:CDS
TTGTACAATAATACTCCGGT+TGG 0.640064 tig0020408:+106730 None:intergenic
AAAGTCGAAGAATTGTGGCA+GGG 0.644806 tig0020408:+107429 None:intergenic
TGATTGCAAATGCAGTGCCA+TGG 0.662207 tig0020408:+109561 None:intergenic
GACGATTTGAGGTTTCAAAG+AGG 0.663177 tig0020408:+109531 None:intergenic
TCATTCTGAGAAACTTGAGG+TGG 0.664975 tig0020408:-109269 Msa1380890:CDS
GGATGATTTAGGAAACGCAG+AGG 0.673607 tig0020408:-107405 Msa1380890:intron
TTTCCATAAAGCATTCACAA+AGG 0.678455 tig0020408:-106625 Msa1380890:CDS
TTCAGGCTATTAAGACAACA+AGG 0.681647 tig0020408:-109061 Msa1380890:CDS
AAGAAGAAGAGCAACAGACG+AGG 0.695455 tig0020408:-106709 Msa1380890:CDS
TAATAGCCTGAAGTGAAGTG+CGG 0.695756 tig0020408:+109072 None:intergenic
TATGTCGCTAGTGCTTGTGG+TGG 0.710715 tig0020408:-109121 Msa1380890:CDS
CAGATAAAGTAGGATCCGTG+AGG 0.735628 tig0020408:+108109 None:intergenic
ATATAGGACGAAAATCAACA+AGG 0.742989 tig0020408:-106789 Msa1380890:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAAAATTAAAAATTA+AGG + tig0020408:107640-107659 None:intergenic 0.0%
!!! TTTTAATTTTTAATTTATTT+TGG - tig0020408:107644-107663 Msa1380890:intron 0.0%
!! AAAATTAAAAATTAAGGAAT+AGG + tig0020408:107634-107653 None:intergenic 10.0%
!! AATTAATGATTAATAATTGT+TGG - tig0020408:107948-107967 Msa1380890:intron 10.0%
!! ATTAATGATTAATAATTGTT+GGG - tig0020408:107949-107968 Msa1380890:intron 10.0%
!!! ATAAAACTTCTTTTTATATA+TGG + tig0020408:108643-108662 None:intergenic 10.0%
!! TATTATTATTCTATAATATG+TGG - tig0020408:109015-109034 Msa1380890:intron 10.0%
!! GATAGTAGTAAATTAAAATT+TGG + tig0020408:106486-106505 None:intergenic 15.0%
!!! ATTTTAATTTACTACTATCT+TGG - tig0020408:106487-106506 Msa1380890:three_prime_UTR 15.0%
!! GAATAATTTATTGAGATTAA+AGG - tig0020408:107433-107452 Msa1380890:CDS 15.0%
!! ATTATGTAGATTAAAGATAT+TGG + tig0020408:107805-107824 None:intergenic 15.0%
!!! ATGACATTTTTGATATTTAT+GGG - tig0020408:107827-107846 Msa1380890:CDS 15.0%
!!! ATAGTTTAGAGTTTAATTTA+AGG - tig0020408:108498-108517 Msa1380890:CDS 15.0%
!! AAATGATTGTTATATACTTA+GGG + tig0020408:108667-108686 None:intergenic 15.0%
!! AAAATGATTGTTATATACTT+AGG + tig0020408:108668-108687 None:intergenic 15.0%
!!! TCATCTACTATATTTTTTAA+AGG + tig0020408:108758-108777 None:intergenic 15.0%
!!! TCTTTTTAATTTATATTGGG+AGG - tig0020408:106983-107002 Msa1380890:intron 20.0%
!!! ATGTATGCTAATTAATTTGA+TGG - tig0020408:107411-107430 Msa1380890:CDS 20.0%
!!! TAAAACGGGTTTTAAATAAA+AGG + tig0020408:107538-107557 None:intergenic 20.0%
!!! TTAATTTATTTTGGTGTAGA+TGG - tig0020408:107653-107672 Msa1380890:intron 20.0%
!!! GATGACATTTTTGATATTTA+TGG - tig0020408:107826-107845 Msa1380890:CDS 20.0%
!!! AAACATGTTTTCATGTAATT+TGG + tig0020408:108011-108030 None:intergenic 20.0%
!! TAAGCATAAGTAAGTAATAT+AGG - tig0020408:108179-108198 Msa1380890:CDS 20.0%
!! TTATATATGGACTTATATGA+TGG + tig0020408:108630-108649 None:intergenic 20.0%
!!! ACTATTTTCATCATATGTTT+GGG - tig0020408:108873-108892 Msa1380890:intron 20.0%
!! ACAAGTCAATAAATCATAAT+TGG + tig0020408:108953-108972 None:intergenic 20.0%
!! AAAAACTTTATCATAAAGCA+AGG + tig0020408:109353-109372 None:intergenic 20.0%
!! TTCTTCAAAAAAAACTCAAT+AGG - tig0020408:109444-109463 Msa1380890:CDS 20.0%
!! TCTTCAAAAAAAACTCAATA+GGG - tig0020408:109445-109464 Msa1380890:CDS 20.0%
!!! AATAATTTATTTTGCTAAGC+AGG - tig0020408:109472-109491 Msa1380890:CDS 20.0%
! CAAAGTGGTAATCAATATTT+AGG + tig0020408:106692-106711 None:intergenic 25.0%
! AAAAAAATGAAGTGCATGTT+TGG + tig0020408:106924-106943 None:intergenic 25.0%
!! TTGATATTTTCACCTAGTTT+TGG + tig0020408:107080-107099 None:intergenic 25.0%
! AAACTAGGTGAAAATATCAA+TGG - tig0020408:107080-107099 Msa1380890:intron 25.0%
!! ATTGGCAAATTTTTGTGAAA+AGG + tig0020408:107257-107276 None:intergenic 25.0%
! ATTTATATAGCACAAATGCA+TGG - tig0020408:107303-107322 Msa1380890:intron 25.0%
!! AAGAGTTGTGATTGAATTTT+AGG - tig0020408:107581-107600 Msa1380890:CDS 25.0%
!! AGAGTTGTGATTGAATTTTA+GGG - tig0020408:107582-107601 Msa1380890:CDS 25.0%
! CTTGTTACATTACATTTCTT+AGG - tig0020408:107905-107924 Msa1380890:intron 25.0%
! ATTACATGAAAACATGTTTC+AGG - tig0020408:108012-108031 Msa1380890:CDS 25.0%
! TTACATGAAAACATGTTTCA+GGG - tig0020408:108013-108032 Msa1380890:CDS 25.0%
! TCCAAAATATATAAGAAGCA+TGG - tig0020408:108065-108084 Msa1380890:CDS 25.0%
!! CCAAAATATATAAGAAGCAT+GGG - tig0020408:108066-108085 Msa1380890:CDS 25.0%
! TTTAAGTATTCTTCAGCATT+TGG + tig0020408:108296-108315 None:intergenic 25.0%
! CTGAAGAATACTTAAAGAAT+GGG - tig0020408:108300-108319 Msa1380890:intron 25.0%
!! GTTCACATTTTCTTTCTTTT+GGG - tig0020408:108353-108372 Msa1380890:intron 25.0%
!!! ATTTTCTTTCTTTTGGGTAA+AGG - tig0020408:108359-108378 Msa1380890:intron 25.0%
! TAAGGAAAATGTTCATACAA+TGG - tig0020408:108388-108407 Msa1380890:intron 25.0%
!!! TCTTGTGATTGATTTTCATT+GGG + tig0020408:108792-108811 None:intergenic 25.0%
!!! TTCTTGTGATTGATTTTCAT+TGG + tig0020408:108793-108812 None:intergenic 25.0%
!! GACTATTTTCATCATATGTT+TGG - tig0020408:108872-108891 Msa1380890:intron 25.0%
! GTTTGTGACAACATAAATAT+AGG - tig0020408:109060-109079 Msa1380890:CDS 25.0%
! TCATCATAACTATACATCAA+TGG + tig0020408:109292-109311 None:intergenic 25.0%
!!! GGTATTGGGATTAATAATTT+TGG + tig0020408:109386-109405 None:intergenic 25.0%
! ATTGAGTTATTCCTTCATAT+TGG + tig0020408:109415-109434 None:intergenic 25.0%
! ATATGAAGGAATAACTCAAT+AGG - tig0020408:109415-109434 Msa1380890:CDS 25.0%
! TATGAAGGAATAACTCAATA+GGG - tig0020408:109416-109435 Msa1380890:CDS 25.0%
! CTTCAAAAAAAACTCAATAG+GGG - tig0020408:109446-109465 Msa1380890:CDS 25.0%
!! TGTATGTTTAGTAGTCTTTT+TGG - tig0020408:109579-109598 Msa1380890:exon 25.0%
AATATACGTAAGTCAAGTAG+TGG + tig0020408:106274-106293 None:intergenic 30.0%
GCATTAATGTTGAAGAAGAA+AGG - tig0020408:106430-106449 Msa1380890:three_prime_UTR 30.0%
! TAATCATTCTGAGAAACTTG+AGG - tig0020408:106593-106612 Msa1380890:CDS 30.0%
GTTCAATTTCTTCTTCAAAG+TGG + tig0020408:106707-106726 None:intergenic 30.0%
AAATTGCTCTTAAGTTATGC+AGG + tig0020408:106963-106982 None:intergenic 30.0%
GTTTAACAAGTTCACTAACA+AGG - tig0020408:107040-107059 Msa1380890:intron 30.0%
GAAAAGTTTGATCCAAAACT+AGG - tig0020408:107065-107084 Msa1380890:intron 30.0%
GAAGATCCTTAAGGAAAAAA+TGG - tig0020408:107181-107200 Msa1380890:intron 30.0%
!!! ATTGTGCCATTTTTTCCTTA+AGG + tig0020408:107190-107209 None:intergenic 30.0%
TTTGTGAAAAGGATACTCTA+AGG + tig0020408:107246-107265 None:intergenic 30.0%
!! AAATTTCTAGCTGTGAACAT+TGG + tig0020408:107275-107294 None:intergenic 30.0%
TTCACAGCTAGAAATTTCTA+TGG - tig0020408:107278-107297 Msa1380890:intron 30.0%
TATGAAAGAAGTTGCGAAAA+TGG - tig0020408:107334-107353 Msa1380890:intron 30.0%
AAATTTGAACAATCTCCTGA+TGG + tig0020408:107385-107404 None:intergenic 30.0%
GAAGAGTTGTGATTAATTGT+CGG + tig0020408:107490-107509 None:intergenic 30.0%
ACGTCATGTTAAAGTAAAAC+GGG + tig0020408:107552-107571 None:intergenic 30.0%
CACGTCATGTTAAAGTAAAA+CGG + tig0020408:107553-107572 None:intergenic 30.0%
!!! ATTTATTTTGGTGTAGATGG+TGG - tig0020408:107656-107675 Msa1380890:intron 30.0%
ATTCTTTCCTCAGATAAAGT+AGG + tig0020408:107769-107788 None:intergenic 30.0%
! GTTCATTTGTTAGATCATAG+AGG + tig0020408:108040-108059 None:intergenic 30.0%
! CCCATGCTTCTTATATATTT+TGG + tig0020408:108069-108088 None:intergenic 30.0%
! AAATATATAAGAAGCATGGG+TGG - tig0020408:108069-108088 Msa1380890:CDS 30.0%
! AATATATAAGAAGCATGGGT+GGG - tig0020408:108070-108089 Msa1380890:CDS 30.0%
GCTGAAGAATACTTAAAGAA+TGG - tig0020408:108299-108318 Msa1380890:intron 30.0%
! GGTTCACATTTTCTTTCTTT+TGG - tig0020408:108352-108371 Msa1380890:intron 30.0%
TTTGGGTAAAGGATTAACTA+AGG - tig0020408:108370-108389 Msa1380890:intron 30.0%
ATATAGGACGAAAATCAACA+AGG - tig0020408:109076-109095 Msa1380890:CDS 30.0%
GAAAATCAACAAGGAAATGA+TGG - tig0020408:109085-109104 Msa1380890:CDS 30.0%
CTTCTTGTACAATAATACTC+CGG + tig0020408:109142-109161 None:intergenic 30.0%
TGAATAAAATATCCGATGCA+TGG - tig0020408:109182-109201 Msa1380890:CDS 30.0%
TGTGAATGCTTTATGGAAAT+GGG + tig0020408:109239-109258 None:intergenic 30.0%
TTGTGAATGCTTTATGGAAA+TGG + tig0020408:109240-109259 None:intergenic 30.0%
! TTTCCATAAAGCATTCACAA+AGG - tig0020408:109240-109259 Msa1380890:CDS 30.0%
CTTTATCATAAAGCAAGGAA+TGG + tig0020408:109348-109367 None:intergenic 30.0%
! ATTCCTTCATATTGGCTAAT+GGG + tig0020408:109407-109426 None:intergenic 30.0%
! TATTCCTTCATATTGGCTAA+TGG + tig0020408:109408-109427 None:intergenic 30.0%
ATGAAGGAATAACTCAATAG+GGG - tig0020408:109417-109436 Msa1380890:CDS 30.0%
!!! TTTATTTTGCTAAGCAGGTT+TGG - tig0020408:109477-109496 Msa1380890:CDS 30.0%
!! TTATTTTGCTAAGCAGGTTT+GGG - tig0020408:109478-109497 Msa1380890:CDS 30.0%
TCAAATCCGCTAATATGTTT+GGG - tig0020408:109516-109535 Msa1380890:CDS 30.0%
!!! TCTGTTTTGTTGTTCTTCAT+TGG - tig0020408:109550-109569 Msa1380890:CDS 30.0%
GTATATTCATTCCTTTGCCA+TGG - tig0020408:106287-106306 Msa1380890:three_prime_UTR 35.0%
! TTTGAGGTTTCAAAGAGGAA+AGG + tig0020408:106332-106351 None:intergenic 35.0%
GAGAAAGTTGTGCAATTGTT+GGG + tig0020408:106359-106378 None:intergenic 35.0%
TGAGAAAGTTGTGCAATTGT+TGG + tig0020408:106360-106379 None:intergenic 35.0%
AAGCATGAACTTAGAAACGT+TGG - tig0020408:106621-106640 Msa1380890:CDS 35.0%
! GTTGGTGAAAATTCACTCAA+AGG - tig0020408:106639-106658 Msa1380890:CDS 35.0%
TAGCGACATATTGTCTTCTT+AGG + tig0020408:106734-106753 None:intergenic 35.0%
TTCAGGCTATTAAGACAACA+AGG - tig0020408:106804-106823 Msa1380890:intron 35.0%
TATGCAGGAAAAGGATCAAA+AGG + tig0020408:106948-106967 None:intergenic 35.0%
CTCTTAAGTTATGCAGGAAA+AGG + tig0020408:106957-106976 None:intergenic 35.0%
ATTCGAATTTACTATCGCAG+AGG - tig0020408:107016-107035 Msa1380890:intron 35.0%
ATGAAGCTGGAAAATTTAGC+AGG - tig0020408:107159-107178 Msa1380890:intron 35.0%
ATTTAGCAGGAAGATCCTTA+AGG - tig0020408:107172-107191 Msa1380890:intron 35.0%
TTCACGAAGCTAAGTTTGTA+AGG - tig0020408:107216-107235 Msa1380890:intron 35.0%
TATAGCACAAATGCATGGTT+TGG - tig0020408:107308-107327 Msa1380890:intron 35.0%
! CGTTTTACTTTAACATGACG+TGG - tig0020408:107551-107570 Msa1380890:CDS 35.0%
! AATTAAGGAATAGGCGTTGT+CGG + tig0020408:107625-107644 None:intergenic 35.0%
TGACCACATGTACCATTTAA+GGG + tig0020408:107728-107747 None:intergenic 35.0%
ATGACCACATGTACCATTTA+AGG + tig0020408:107729-107748 None:intergenic 35.0%
TAAATGGTACATGTGGTCAT+TGG - tig0020408:107729-107748 Msa1380890:intron 35.0%
AAATGGTACATGTGGTCATT+GGG - tig0020408:107730-107749 Msa1380890:intron 35.0%
!! TGTTCACTGAAGTTGTTTCT+AGG - tig0020408:107869-107888 Msa1380890:CDS 35.0%
TAATAATTGTTGGGTGCAGA+TGG - tig0020408:107958-107977 Msa1380890:intron 35.0%
AATAATTGTTGGGTGCAGAT+GGG - tig0020408:107959-107978 Msa1380890:intron 35.0%
ATGGGATATTGACACAGATA+TGG - tig0020408:107977-107996 Msa1380890:intron 35.0%
TCTTTCGAAGAGAGTCTTTA+GGG + tig0020408:108097-108116 None:intergenic 35.0%
TAAAGACTCTCTTCGAAAGA+CGG - tig0020408:108097-108116 Msa1380890:CDS 35.0%
! ATCTTTTACCATTTGTGCAG+TGG - tig0020408:108213-108232 Msa1380890:intron 35.0%
! TCTTTTACCATTTGTGCAGT+GGG - tig0020408:108214-108233 Msa1380890:intron 35.0%
! CCATTTTGCTTCAACTAGAA+AGG + tig0020408:108255-108274 None:intergenic 35.0%
!! CCTTTCTAGTTGAAGCAAAA+TGG - tig0020408:108252-108271 Msa1380890:intron 35.0%
CTAGTTGAAGCAAAATGGTT+TGG - tig0020408:108257-108276 Msa1380890:intron 35.0%
!! AAGCAAAATGGTTTGGTTCA+GGG - tig0020408:108264-108283 Msa1380890:intron 35.0%
! ATACGTGAAGTGTCTAATGA+TGG - tig0020408:109111-109130 Msa1380890:CDS 35.0%
TTGTACAATAATACTCCGGT+TGG + tig0020408:109138-109157 None:intergenic 35.0%
AGACCTTTGTGAATGCTTTA+TGG + tig0020408:109246-109265 None:intergenic 35.0%
! CATATTGGCTAATGGGTATT+GGG + tig0020408:109400-109419 None:intergenic 35.0%
! TCATATTGGCTAATGGGTAT+TGG + tig0020408:109401-109420 None:intergenic 35.0%
ATACCCATTAGCCAATATGA+AGG - tig0020408:109401-109420 Msa1380890:intron 35.0%
GTCAAATCCGCTAATATGTT+TGG - tig0020408:109515-109534 Msa1380890:CDS 35.0%
! GACGATTTGAGGTTTCAAAG+AGG + tig0020408:106337-106356 None:intergenic 40.0%
CTCTTCACATTGCTAACAAG+TGG - tig0020408:106406-106425 Msa1380890:three_prime_UTR 40.0%
! TCATTCTGAGAAACTTGAGG+TGG - tig0020408:106596-106615 Msa1380890:CDS 40.0%
! ATCAATATTTAGGCGCTGCA+TGG + tig0020408:106682-106701 None:intergenic 40.0%
TAATAGCCTGAAGTGAAGTG+CGG + tig0020408:106796-106815 None:intergenic 40.0%
ACGCACTTAAAACTAACCTG+CGG + tig0020408:106841-106860 None:intergenic 40.0%
! GCATGTTTGGAATTACAGTG+AGG + tig0020408:106911-106930 None:intergenic 40.0%
GAAGACATACTTGATGAAGC+TGG - tig0020408:107146-107165 Msa1380890:intron 40.0%
!! ATGGATTTCAGTTTGCTGCA+AGG - tig0020408:107353-107372 Msa1380890:intron 40.0%
GACCACATGTACCATTTAAG+GGG + tig0020408:107727-107746 None:intergenic 40.0%
GTCTTTCGAAGAGAGTCTTT+AGG + tig0020408:108098-108117 None:intergenic 40.0%
!! GAAGCAAAATGGTTTGGTTC+AGG - tig0020408:108263-108282 Msa1380890:intron 40.0%
AAGAATGGGATAGTAAGCTC+TGG - tig0020408:108314-108333 Msa1380890:intron 40.0%
AAAGTCGAAGAATTGTGGCA+GGG + tig0020408:108439-108458 None:intergenic 40.0%
TGCCACAATTCTTCGACTTT+GGG - tig0020408:108439-108458 Msa1380890:intron 40.0%
ATCCCAAAGTCGAAGAATTG+TGG + tig0020408:108444-108463 None:intergenic 40.0%
!! CTTCGACTTTGGGATGATTT+AGG - tig0020408:108449-108468 Msa1380890:intron 40.0%
CCGATACCCAAACATATTAG+CGG + tig0020408:109525-109544 None:intergenic 40.0%
CCGCTAATATGTTTGGGTAT+CGG - tig0020408:109522-109541 Msa1380890:CDS 40.0%
TGATTGCAAATGCAGTGCCA+TGG + tig0020408:106307-106326 None:intergenic 45.0%
GCAATTGTTGGGACGATTTG+AGG + tig0020408:106348-106367 None:intergenic 45.0%
CAATATGTCGCTAGTGCTTG+TGG - tig0020408:106741-106760 Msa1380890:CDS 45.0%
CGCACTTAAAACTAACCTGC+GGG + tig0020408:106840-106859 None:intergenic 45.0%
!! TGTAGATGGTGGAGAGAACT+TGG - tig0020408:107667-107686 Msa1380890:intron 45.0%
CTAGAAACCAGCCCCTTAAA+TGG - tig0020408:107713-107732 Msa1380890:intron 45.0%
ACATGTACCATTTAAGGGGC+TGG + tig0020408:107723-107742 None:intergenic 45.0%
AGCCCCTTAAATGGTACATG+TGG - tig0020408:107722-107741 Msa1380890:intron 45.0%
CAGATAAAGTAGGATCCGTG+AGG + tig0020408:107759-107778 None:intergenic 45.0%
CACGGATCCTACTTTATCTG+AGG - tig0020408:107759-107778 Msa1380890:intron 45.0%
AAACTCTCCCACTGCACAAA+TGG + tig0020408:108224-108243 None:intergenic 45.0%
!! AGGGGCGGAAATAATGGATA+GGG + tig0020408:108420-108439 None:intergenic 45.0%
AAGTCGAAGAATTGTGGCAG+GGG + tig0020408:108438-108457 None:intergenic 45.0%
CAAAGTCGAAGAATTGTGGC+AGG + tig0020408:108440-108459 None:intergenic 45.0%
CTGCCACAATTCTTCGACTT+TGG - tig0020408:108438-108457 Msa1380890:intron 45.0%
GGATGATTTAGGAAACGCAG+AGG - tig0020408:108460-108479 Msa1380890:intron 45.0%
!! GTGTCTAATGATGGACCAAC+CGG - tig0020408:109120-109139 Msa1380890:CDS 45.0%
AAGAAGAAGAGCAACAGACG+AGG - tig0020408:109156-109175 Msa1380890:CDS 45.0%
! GTTGAGGCTTTTCCATGCAT+CGG + tig0020408:109197-109216 None:intergenic 45.0%
CAAAGAGACACTCTTGGTTG+AGG + tig0020408:109213-109232 None:intergenic 45.0%
GGGTATCAAAGAGACACTCT+TGG + tig0020408:109219-109238 None:intergenic 45.0%
AGGTCTCACTCAATCTTGCA+AGG - tig0020408:109260-109279 Msa1380890:CDS 45.0%
CTCACTCAATCTTGCAAGGA+TGG - tig0020408:109264-109283 Msa1380890:CDS 45.0%
ATGATAAGCACTCCCTTCCT+GGG - tig0020408:109308-109327 Msa1380890:intron 45.0%
!!! ATTTTCTTTTTAATTTATAT+TGG - tig0020408:106979-106998 Msa1380890:intron 5.0%
!!! TTTTCTTTTTAATTTATATT+GGG - tig0020408:106980-106999 Msa1380890:intron 5.0%
!!! TTAATCATTAATTTTTTTTT+TGG + tig0020408:107941-107960 None:intergenic 5.0%
CAAATGCAGTGCCATGGCAA+AGG + tig0020408:106301-106320 None:intergenic 50.0%
TATGTCGCTAGTGCTTGTGG+TGG - tig0020408:106744-106763 Msa1380890:CDS 50.0%
ATGAGACCGCACTTCACTTC+AGG - tig0020408:106787-106806 Msa1380890:intron 50.0%
TGAAGCCTCGCATCTAAACC+TGG - tig0020408:107118-107137 Msa1380890:intron 50.0%
!! AGGGGCTGGTTTCTAGCATA+TGG + tig0020408:107709-107728 None:intergenic 50.0%
!! CTCTGGAGTGCATATTGTGC+TGG - tig0020408:108331-108350 Msa1380890:intron 50.0%
!! CAGGGGCGGAAATAATGGAT+AGG + tig0020408:108421-108440 None:intergenic 50.0%
GATGATAAGCACTCCCTTCC+TGG - tig0020408:109307-109326 Msa1380890:intron 50.0%
ATAACCCTCTAGCCCAGGAA+GGG + tig0020408:109323-109342 None:intergenic 50.0%
GGTTTGGGTATCAGTTGTCG+TGG - tig0020408:109493-109512 Msa1380890:CDS 50.0%
ACAGCAATCCCTTCAGCACA+AGG + tig0020408:109609-109628 None:intergenic 50.0%
TTGTGCTGAAGGGATTGCTG+TGG - tig0020408:109608-109627 Msa1380890:five_prime_UTR 50.0%
! CAAGGTCACTTTGTTCCCGC+AGG - tig0020408:106822-106841 Msa1380890:intron 55.0%
CCTCGCATCTAAACCTGGCA+GGG - tig0020408:107123-107142 Msa1380890:intron 55.0%
CTCGCATCTAAACCTGGCAG+GGG - tig0020408:107124-107143 Msa1380890:intron 55.0%
CAAGTATGTCTTCCCCTGCC+AGG + tig0020408:107139-107158 None:intergenic 55.0%
GCTGCAAGGCTTACACCATC+AGG - tig0020408:107367-107386 Msa1380890:intron 55.0%
GTGGTCATTGGGATGCCTCA+CGG - tig0020408:107741-107760 Msa1380890:intron 55.0%
TGTGGCAGGGGCGGAAATAA+TGG + tig0020408:108426-108445 None:intergenic 55.0%
TCGAAGAATTGTGGCAGGGG+CGG + tig0020408:108435-108454 None:intergenic 55.0%
CATAACCCTCTAGCCCAGGA+AGG + tig0020408:109324-109343 None:intergenic 55.0%
TGGACATAACCCTCTAGCCC+AGG + tig0020408:109328-109347 None:intergenic 55.0%
TTTGGCACGCCTTGTGCTGA+AGG - tig0020408:109597-109616 Msa1380890:five_prime_UTR 55.0%
TTGGCACGCCTTGTGCTGAA+GGG - tig0020408:109598-109617 Msa1380890:five_prime_UTR 55.0%
GCCTCGCATCTAAACCTGGC+AGG - tig0020408:107122-107141 Msa1380890:intron 60.0%
CCCTGCCAGGTTTAGATGCG+AGG + tig0020408:107126-107145 None:intergenic 60.0%
! CACTCCCTTCCTGGGCTAGA+GGG - tig0020408:109316-109335 Msa1380890:intron 60.0%
! GCACTCCCTTCCTGGGCTAG+AGG - tig0020408:109315-109334 Msa1380890:intron 65.0%
Chromosome Type Strat End Strand Name
tig0020408 gene 106233 109654 106233 ID=Msa1380890;Name=Msa1380890
tig0020408 mRNA 106233 109654 106233 ID=Msa1380890-mRNA-1;Parent=Msa1380890;Name=Msa1380890-mRNA-1;_AED=0.06;_eAED=0.06;_QI=73|1|1|1|1|1|7|279|572
tig0020408 exon 106233 106805 106233 ID=Msa1380890-mRNA-1:exon:7277;Parent=Msa1380890-mRNA-1
tig0020408 exon 107406 107654 107406 ID=Msa1380890-mRNA-1:exon:7276;Parent=Msa1380890-mRNA-1
tig0020408 exon 107769 107910 107769 ID=Msa1380890-mRNA-1:exon:7275;Parent=Msa1380890-mRNA-1
tig0020408 exon 107997 108215 107997 ID=Msa1380890-mRNA-1:exon:7274;Parent=Msa1380890-mRNA-1
tig0020408 exon 108479 108851 108479 ID=Msa1380890-mRNA-1:exon:7273;Parent=Msa1380890-mRNA-1
tig0020408 exon 109044 109314 109044 ID=Msa1380890-mRNA-1:exon:7272;Parent=Msa1380890-mRNA-1
tig0020408 exon 109411 109654 109411 ID=Msa1380890-mRNA-1:exon:7271;Parent=Msa1380890-mRNA-1
tig0020408 five_prime_UTR 109582 109654 109582 ID=Msa1380890-mRNA-1:five_prime_utr;Parent=Msa1380890-mRNA-1
tig0020408 CDS 109411 109581 109411 ID=Msa1380890-mRNA-1:cds;Parent=Msa1380890-mRNA-1
tig0020408 CDS 109044 109314 109044 ID=Msa1380890-mRNA-1:cds;Parent=Msa1380890-mRNA-1
tig0020408 CDS 108479 108851 108479 ID=Msa1380890-mRNA-1:cds;Parent=Msa1380890-mRNA-1
tig0020408 CDS 107997 108215 107997 ID=Msa1380890-mRNA-1:cds;Parent=Msa1380890-mRNA-1
tig0020408 CDS 107769 107910 107769 ID=Msa1380890-mRNA-1:cds;Parent=Msa1380890-mRNA-1
tig0020408 CDS 107406 107654 107406 ID=Msa1380890-mRNA-1:cds;Parent=Msa1380890-mRNA-1
tig0020408 CDS 106512 106805 106512 ID=Msa1380890-mRNA-1:cds;Parent=Msa1380890-mRNA-1
tig0020408 three_prime_UTR 106233 106511 106233 ID=Msa1380890-mRNA-1:three_prime_utr;Parent=Msa1380890-mRNA-1
Gene Sequence

>Msa1380890

ATGGCACTGCATTTGCAATCATGCCTTTCCTCTTTGAAACCTCAAATCGTCCCAACAATTGCACAACTTTCTCAAAACTTTAATAATCTCAAGCTTGATTCTCTTCACATTGCTAACAAGTGGAGCATTAATGTTGAAGAAGAAAGGCGTAGTGCACTCATAAAACAACATAGAGATCTCAGCAGCAATAATAATCATTCTGAGAAACTTGAGGTGGTTAAGCATGAACTTAGAAACGTTGGTGAAAATTCACTCAAAGGTTTGTATATGATTGATGCCATGCAGCGCCTAAATATTGATTACCACTTTGAAGAAGAAATTGAACAATTCCTAAGAAGACAATATGTCGCTAGTGCTTGTGGTGGAAGTAATCATCATAATCTTCATGAGACCGCACTTCACTTCAGGCTATTAAGACAACAAGGTCACTTTGTTCCCGCAGAGGTGTTTAACAAGTTCACTAACAAGGATGAAAAGTTTGATCCAAAACTAGGTGAAAATATCAATGGAATGATAGATTTATTTGAAGCCTCGCATCTAAACCTGGCAGGGGAAGACATACTTGATGAAGCTGGAAAATTTAGCAGGAAGATCCTTAAGGAAAAAATGGCACAATTTGATTTTCACGAAGCTAAGTTTGTAAGGAGAACCTTAGAGTATCCTTTTCACAAAAATTTGCCAATGTTCACAGCTAGAAATTTCTATGGTCATTTATATAGCACAAATGCATGGTTTGGTTCTATGAAAGAAGTTGCGAAAATGGATTTCAGTTTGCTGCAAGGCTTACACCATCAGGAGATTGTTCAAATTTCAAAATGGTGGAGAGAACTTGGTTTAGCTAATGAATTACCATATGCTAGAAACCAGCCCCTTAAATGGTACATGTGGTCATTGGGATGCCTCACGGATCCTACTTTATCTGAGGAAAGAATTGAGCTCACAAAACCAATATCTTTAATCTACATAATTGATGACATTTTTGATATTTATGGGACTCTAGATGAGTTAACTCTGTTCACTGAAGTTGTTTCTAGATGGGATATTGACACAGATATGGAGCAACTACCAAATTACATGAAAACATGTTTCAGGGTCCTCTATGATCTAACAAATGAACTAAGCTCCAAAATATATAAGAAGCATGGGTGGGACCCTAAAGACTCTCTTCGAAAGACGTGGGAGAGTTTGTGCAAAGCCTTTCTAGTTGAAGCAAAATGGTTTGGTTCAGGGAAGTTGCCAAATGCTGAAGAATACTTAAAGAATGGGATAGTAAGCTCTGGAGTGCATATTGTGCTGGTTCACATTTTCTTTCTTTTGGGTAAAGGATTAACTAAGGAAAATGTTCATACAATGGACACAACCCTATCCATTATTTCCGCCCCTGCCACAATTCTTCGACTTTGGGATGATTTAGGAAACGCAGAGGACGAAAATCAACAAGGAAATGATGGATCATACGTGAAGTGTCTAATGATGGACCAACCGGAGTATTATTGTACAAGAAGAAGAGCAACAGACGAGGTTATGAATAAAATATCCGATGCATGGAAAAGCCTCAACCAAGAGTGTCTCTTTGATACCCATTTCCATAAAGCATTCACAAAGGTCTCACTCAATCTTGCAAGGATGGTACCATTGATGTATAGTTATGATGATAAGCACTCCCTTCCTGGGCTAGAGGGTTATGTCCATTCCTTGCTTTATGATAAAGTTTTTTGA
Protein sequence

>Msa1380890

MALHLQSCLSSLKPQIVPTIAQLSQNFNNLKLDSLHIANKWSINVEEERRSALIKQHRDLSSNNNHSEKLEVVKHELRNVGENSLKGLYMIDAMQRLNIDYHFEEEIEQFLRRQYVASACGGSNHHNLHETALHFRLLRQQGHFVPAEVFNKFTNKDEKFDPKLGENINGMIDLFEASHLNLAGEDILDEAGKFSRKILKEKMAQFDFHEAKFVRRTLEYPFHKNLPMFTARNFYGHLYSTNAWFGSMKEVAKMDFSLLQGLHHQEIVQISKWWRELGLANELPYARNQPLKWYMWSLGCLTDPTLSEERIELTKPISLIYIIDDIFDIYGTLDELTLFTEVVSRWDIDTDMEQLPNYMKTCFRVLYDLTNELSSKIYKKHGWDPKDSLRKTWESLCKAFLVEAKWFGSGKLPNAEEYLKNGIVSSGVHIVLVHIFFLLGKGLTKENVHTMDTTLSIISAPATILRLWDDLGNAEDENQQGNDGSYVKCLMMDQPEYYCTRRRATDEVMNKISDAWKSLNQECLFDTHFHKAFTKVSLNLARMVPLMYSYDDKHSLPGLEGYVHSLLYDKVF*