Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386720 | XP_003594278.2 | 88.114 | 387 | 9 | 2 | 1 | 350 | 1 | 387 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386720 | G7IPB9 | 88.114 | 387 | 9 | 2 | 1 | 350 | 1 | 387 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0277460 | Msa1386720 | 0.970329 | 1.882734e-131 | -8.615850e-47 |
| Msa0317170 | Msa1386720 | 0.828203 | 1.024574e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386720 | MtrunA17_Chr2g0290311 | 88.114 | 387 | 9 | 2 | 1 | 350 | 1 | 387 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386720 | AT4G17240.1 | 49.062 | 320 | 108 | 10 | 10 | 298 | 2 | 297 | 1.20e-67 | 216 |
| Msa1386720 | AT4G17240.2 | 44.062 | 320 | 108 | 13 | 10 | 298 | 2 | 281 | 9.69e-50 | 169 |
Find 88 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATGATTTGGGGTGTTTA+AGG | 0.189107 | tig0020858:+72734 | None:intergenic |
| ATGACTTGATTTCTTCTCTT+TGG | 0.198265 | tig0020858:+71464 | None:intergenic |
| ATCCAATTCCATGTTTATTA+TGG | 0.209716 | tig0020858:+70124 | None:intergenic |
| CTTGACTTGTTGGCCTTATA+AGG | 0.240588 | tig0020858:+70480 | None:intergenic |
| GAATTATCTATCCTTGTATA+TGG | 0.261392 | tig0020858:-69882 | Msa1386720:three_prime_UTR |
| CATCATAACACCGACAAAAT+AGG | 0.264743 | tig0020858:-70208 | Msa1386720:CDS |
| TCCATGCTTAACACCTTATA+AGG | 0.301400 | tig0020858:-70493 | Msa1386720:CDS |
| TGAAGATGAAGATGATGATT+TGG | 0.302383 | tig0020858:+72723 | None:intergenic |
| GAAGATGAAGATGATGATTT+GGG | 0.304496 | tig0020858:+72724 | None:intergenic |
| GATTTAGATCTTTGAGTAAT+AGG | 0.306235 | tig0020858:+70514 | None:intergenic |
| GGAGCTTCTGAGTGTGAATA+AGG | 0.308937 | tig0020858:-72377 | Msa1386720:CDS |
| ATTTGAAGAAGGATGCTAAA+AGG | 0.318739 | tig0020858:-72534 | Msa1386720:CDS |
| GTGGTGGTGTTCACAGATTT+TGG | 0.322431 | tig0020858:+72601 | None:intergenic |
| GTTCATGTTGTTTAACTCAT+AGG | 0.323014 | tig0020858:+72756 | None:intergenic |
| AACCATAATAAACATGGAAT+TGG | 0.337866 | tig0020858:-70126 | Msa1386720:three_prime_UTR |
| TACCCTGGATCTTGACTTGT+TGG | 0.344307 | tig0020858:+70470 | None:intergenic |
| TGTTACGAATTCTCAGCTTC+AGG | 0.362474 | tig0020858:-71416 | Msa1386720:CDS |
| GGACCCCACATTAACCAAAA+TGG | 0.363148 | tig0020858:-72647 | Msa1386720:CDS |
| AGCTGAGAATTCGTAACATC+TGG | 0.381164 | tig0020858:+71421 | None:intergenic |
| TTTCTTGCAGGATTCTCTGC+TGG | 0.381599 | tig0020858:-70326 | Msa1386720:intron |
| AAGAAGCTGTTTGGGAAAAG+TGG | 0.391876 | tig0020858:-72487 | Msa1386720:CDS |
| ATCGGATCTTCGACTTGCTT+TGG | 0.396908 | tig0020858:+70177 | None:intergenic |
| CGTTGCAGAAGAAGCTGTTT+GGG | 0.404705 | tig0020858:-72495 | Msa1386720:CDS |
| ACGTTGCAGAAGAAGCTGTT+TGG | 0.421127 | tig0020858:-72496 | Msa1386720:CDS |
| TTTAACTCATAGGATGAAGA+TGG | 0.449077 | tig0020858:+72766 | None:intergenic |
| TCCTTCAGATGTTATTGCTA+AGG | 0.460464 | tig0020858:-72557 | Msa1386720:CDS |
| TTTGAAGAAGGATGCTAAAA+GGG | 0.483411 | tig0020858:-72533 | Msa1386720:CDS |
| AGGCCAACAAGTCAAGATCC+AGG | 0.484409 | tig0020858:-70473 | Msa1386720:CDS |
| CTGTGTTATTTGAGCAACTT+CGG | 0.485151 | tig0020858:-70027 | Msa1386720:three_prime_UTR |
| ACAGTTGGCAGCCGTCTGAT+TGG | 0.490813 | tig0020858:-70073 | Msa1386720:three_prime_UTR |
| GCCTTATAAGGTGTTAAGCA+TGG | 0.496148 | tig0020858:+70492 | None:intergenic |
| TATTGCTAAGGATTTGAAGA+AGG | 0.505246 | tig0020858:-72545 | Msa1386720:CDS |
| CATTCCATCTCTACAACAGC+AGG | 0.518931 | tig0020858:-71347 | Msa1386720:CDS |
| TGTAGCTCCAACAACAAAAG+TGG | 0.519732 | tig0020858:-72668 | Msa1386720:CDS |
| GAAACCTGCTGTTGTAGAGA+TGG | 0.525678 | tig0020858:+71343 | None:intergenic |
| CAGCAGGTTTCTTCTCTCAC+TGG | 0.533966 | tig0020858:-71331 | Msa1386720:CDS |
| AAGGATGCTAAAAGGGTCAC+CGG | 0.537473 | tig0020858:-72526 | Msa1386720:CDS |
| GAGTTAAAATCATCAAGCTC+AGG | 0.548017 | tig0020858:+70268 | None:intergenic |
| CTTCTGCAACGTCGAAAACC+CGG | 0.551326 | tig0020858:+72507 | None:intergenic |
| GATTGAGAATAAGAATAAAG+AGG | 0.551856 | tig0020858:-72320 | Msa1386720:intron |
| CAGAAGTGAAGGGGAATACA+AGG | 0.555355 | tig0020858:-72429 | Msa1386720:CDS |
| CCGATGACCGCAAAACAGCT+TGG | 0.555852 | tig0020858:-70159 | Msa1386720:CDS |
| GGAACTGAAAGAAGCAAAGC+AGG | 0.562796 | tig0020858:-71371 | Msa1386720:CDS |
| TCCTTAGCAATAACATCTGA+AGG | 0.563245 | tig0020858:+72556 | None:intergenic |
| TGTGAATAAGGAGCAAGAGG+AGG | 0.563942 | tig0020858:-72365 | Msa1386720:CDS |
| TGCGTTGACGCAGTTACAGT+TGG | 0.567574 | tig0020858:-70088 | Msa1386720:three_prime_UTR |
| GAAGGCTTTGACAGAAGTGA+AGG | 0.568228 | tig0020858:-72440 | Msa1386720:CDS |
| GAGTGTGAATAAGGAGCAAG+AGG | 0.571644 | tig0020858:-72368 | Msa1386720:CDS |
| GTTGTTGGAGCTACACTAGA+GGG | 0.572730 | tig0020858:+72676 | None:intergenic |
| AAACAACTTAGTAGTGGTGG+TGG | 0.573884 | tig0020858:+72582 | None:intergenic |
| AGCCGTCTGATTGGTATCAA+TGG | 0.574849 | tig0020858:-70064 | Msa1386720:three_prime_UTR |
| TTATACCTCTGCAAGATCCT+CGG | 0.575006 | tig0020858:+71291 | None:intergenic |
| AGAAGCTGTTTGGGAAAAGT+GGG | 0.579536 | tig0020858:-72486 | Msa1386720:CDS |
| TGTTGTTGGAGCTACACTAG+AGG | 0.585324 | tig0020858:+72675 | None:intergenic |
| AATAAACAACTTAGTAGTGG+TGG | 0.585481 | tig0020858:+72579 | None:intergenic |
| TTAACTCATAGGATGAAGAT+GGG | 0.589572 | tig0020858:+72767 | None:intergenic |
| GTAGGAACTGTATCTAGAAG+AGG | 0.589655 | tig0020858:+72828 | None:intergenic |
| TTTGCAGGTAGAGAAGTTGA+AGG | 0.592614 | tig0020858:-71500 | Msa1386720:intron |
| AGAGGGTTTAGCTTTGACAA+TGG | 0.595116 | tig0020858:+72693 | None:intergenic |
| GAATACAAGGACACTTGCTA+TGG | 0.596634 | tig0020858:-72416 | Msa1386720:CDS |
| TGTTGAAGAACGTGAATCGT+AGG | 0.596776 | tig0020858:+72810 | None:intergenic |
| TGAGAAGAAAGAGAAAGTGA+AGG | 0.599855 | tig0020858:-72458 | Msa1386720:CDS |
| GGACACTTGCTATGGTGTTG+AGG | 0.605195 | tig0020858:-72408 | Msa1386720:CDS |
| AGGAATAAACAACTTAGTAG+TGG | 0.605663 | tig0020858:+72576 | None:intergenic |
| AAGGCTTTGACAGAAGTGAA+GGG | 0.605869 | tig0020858:-72439 | Msa1386720:CDS |
| GCTGAGAATTCGTAACATCT+GGG | 0.609356 | tig0020858:+71422 | None:intergenic |
| GGCCAACAAGTCAAGATCCA+GGG | 0.610888 | tig0020858:-70472 | Msa1386720:intron |
| CTATGGTGTTGAGGAGTGAG+AGG | 0.615079 | tig0020858:-72399 | Msa1386720:CDS |
| TAGGAACTGTATCTAGAAGA+GGG | 0.617000 | tig0020858:+72829 | None:intergenic |
| GCTCATGTGAACCATATACA+AGG | 0.618434 | tig0020858:+69871 | None:intergenic |
| ATGACCGCAAAACAGCTTGG+AGG | 0.621082 | tig0020858:-70156 | Msa1386720:CDS |
| CAACTTAGTAGTGGTGGTGG+TGG | 0.624589 | tig0020858:+72585 | None:intergenic |
| AGCCATTGATACCAATCAGA+CGG | 0.627130 | tig0020858:+70062 | None:intergenic |
| GGAAACAAGGAAAAGAGATG+AGG | 0.627965 | tig0020858:+69983 | None:intergenic |
| ACTCGTAGAGAAGCAAAGCT+CGG | 0.632315 | tig0020858:-71392 | Msa1386720:CDS |
| AGAATGAACCATAATAAACA+TGG | 0.638228 | tig0020858:-70132 | Msa1386720:three_prime_UTR |
| AGGCTTTGACAGAAGTGAAG+GGG | 0.658233 | tig0020858:-72438 | Msa1386720:CDS |
| TTGATTTGAACTGAAGAACG+AGG | 0.661368 | tig0020858:+72945 | None:intergenic |
| CATGCAGGAGTTTAGCTCTG+AGG | 0.662092 | tig0020858:-70550 | Msa1386720:intron |
| TCAGCTTCAAAGCCTTGCCG+AGG | 0.664957 | tig0020858:-71308 | Msa1386720:CDS |
| CCTCTGCAAGATCCTCGGCA+AGG | 0.669376 | tig0020858:+71296 | None:intergenic |
| AGGATGCTAAAAGGGTCACC+GGG | 0.670222 | tig0020858:-72525 | Msa1386720:CDS |
| TCCAACTTCTAAAACAGACA+CGG | 0.674788 | tig0020858:+69938 | None:intergenic |
| GCTGGATGAAAGCTTATCTG+AGG | 0.675802 | tig0020858:-70308 | Msa1386720:CDS |
| CCTTGCCGAGGATCTTGCAG+AGG | 0.682172 | tig0020858:-71296 | Msa1386720:intron |
| AAGATGAAGATGATGATTTG+GGG | 0.693085 | tig0020858:+72725 | None:intergenic |
| AGAGATGAGGAATCTCAACA+AGG | 0.703409 | tig0020858:+69996 | None:intergenic |
| TATGGTGTTGAGGAGTGAGA+GGG | 0.723717 | tig0020858:-72398 | Msa1386720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTAATTTTGATATGTT+TGG | + | tig0020858:70952-70971 | None:intergenic | 10.0% |
| !!! | TTTGAATTTGAAAAATATTT+TGG | - | tig0020858:72205-72224 | Msa1386720:intron | 10.0% |
| !!! | AACTCACTTTTAACTAAAAT+CGG | + | tig0020858:70735-70754 | None:intergenic | 20.0% |
| !!! | TGAAATTGATTTTTACAAGT+GGG | + | tig0020858:70918-70937 | None:intergenic | 20.0% |
| !!! | TTGAAATTGATTTTTACAAG+TGG | + | tig0020858:70919-70938 | None:intergenic | 20.0% |
| !! | ATAAGTTATTGTCTAACTAA+AGG | - | tig0020858:71167-71186 | Msa1386720:intron | 20.0% |
| !! | TAAGTTATTGTCTAACTAAA+GGG | - | tig0020858:71168-71187 | Msa1386720:intron | 20.0% |
| !!! | TGTTTTTTCATTTGTTTGAT+AGG | - | tig0020858:71978-71997 | Msa1386720:intron | 20.0% |
| !! | GAAAAATGCATAAATTAGTA+AGG | + | tig0020858:72367-72386 | None:intergenic | 20.0% |
| !! | CATGAAATTTTTCACCATTT+TGG | + | tig0020858:70158-70177 | None:intergenic | 25.0% |
| ! | GATTGAGAATAAGAATAAAG+AGG | - | tig0020858:70468-70487 | Msa1386720:intron | 25.0% |
| !! | TTGAATCTGATTTGCAATTA+TGG | - | tig0020858:70515-70534 | Msa1386720:CDS | 25.0% |
| !! | TGAATCTGATTTGCAATTAT+GGG | - | tig0020858:70516-70535 | Msa1386720:CDS | 25.0% |
| !!! | TAATTGTTTTACCTCAGAAA+TGG | - | tig0020858:70614-70633 | Msa1386720:intron | 25.0% |
| ! | ATCAAAAAAAACCATTTCTG+AGG | + | tig0020858:70628-70647 | None:intergenic | 25.0% |
| !!! | TAGTTTTAGATTTGTGTGTT+TGG | - | tig0020858:70677-70696 | Msa1386720:intron | 25.0% |
| ! | AAAAGTGACAAGATTATGAA+AGG | - | tig0020858:70791-70810 | Msa1386720:intron | 25.0% |
| ! | ATTTGTGCAAAAATCAAGTT+TGG | - | tig0020858:70858-70877 | Msa1386720:intron | 25.0% |
| ! | GAAGTTAAAAATTGAGATAC+TGG | - | tig0020858:71041-71060 | Msa1386720:intron | 25.0% |
| !!! | TTGTTATTTCTTTGTTCCTT+AGG | - | tig0020858:71214-71233 | Msa1386720:intron | 25.0% |
| !!! | TGTTATTTCTTTGTTCCTTA+GGG | - | tig0020858:71215-71234 | Msa1386720:intron | 25.0% |
| ! | TATAAAAGCAAACTTGGATT+TGG | + | tig0020858:71629-71648 | None:intergenic | 25.0% |
| ! | ATCAGATATAAAAGCAAACT+TGG | + | tig0020858:71635-71654 | None:intergenic | 25.0% |
| ! | GATAAGTATTCAACAAAAAC+AGG | - | tig0020858:72009-72028 | Msa1386720:intron | 25.0% |
| ! | GATTTAGATCTTTGAGTAAT+AGG | + | tig0020858:72277-72296 | None:intergenic | 25.0% |
| ! | AGAATGAACCATAATAAACA+TGG | - | tig0020858:72656-72675 | Msa1386720:CDS | 25.0% |
| ! | AACCATAATAAACATGGAAT+TGG | - | tig0020858:72662-72681 | Msa1386720:CDS | 25.0% |
| ! | ATCCAATTCCATGTTTATTA+TGG | + | tig0020858:72667-72686 | None:intergenic | 25.0% |
| ! | AAAACTGAAAAATGGAAACA+AGG | + | tig0020858:72821-72840 | None:intergenic | 25.0% |
| ! | GAATTATCTATCCTTGTATA+TGG | - | tig0020858:72906-72925 | Msa1386720:five_prime_UTR | 25.0% |
| TTAACTCATAGGATGAAGAT+GGG | + | tig0020858:70024-70043 | None:intergenic | 30.0% | |
| TTTAACTCATAGGATGAAGA+TGG | + | tig0020858:70025-70044 | None:intergenic | 30.0% | |
| ! | GTTCATGTTGTTTAACTCAT+AGG | + | tig0020858:70035-70054 | None:intergenic | 30.0% |
| AAGATGAAGATGATGATTTG+GGG | + | tig0020858:70066-70085 | None:intergenic | 30.0% | |
| GAAGATGAAGATGATGATTT+GGG | + | tig0020858:70067-70086 | None:intergenic | 30.0% | |
| TGAAGATGAAGATGATGATT+TGG | + | tig0020858:70068-70087 | None:intergenic | 30.0% | |
| !!! | TTCACCATTTTGGTTAATGT+GGG | + | tig0020858:70148-70167 | None:intergenic | 30.0% |
| !!! | TTTCACCATTTTGGTTAATG+TGG | + | tig0020858:70149-70168 | None:intergenic | 30.0% |
| AATAAACAACTTAGTAGTGG+TGG | + | tig0020858:70212-70231 | None:intergenic | 30.0% | |
| AGGAATAAACAACTTAGTAG+TGG | + | tig0020858:70215-70234 | None:intergenic | 30.0% | |
| TATTGCTAAGGATTTGAAGA+AGG | - | tig0020858:70243-70262 | Msa1386720:CDS | 30.0% | |
| ATTTGAAGAAGGATGCTAAA+AGG | - | tig0020858:70254-70273 | Msa1386720:CDS | 30.0% | |
| TTTGAAGAAGGATGCTAAAA+GGG | - | tig0020858:70255-70274 | Msa1386720:CDS | 30.0% | |
| ! | ATATTTGGAATGTGATTGGT+TGG | + | tig0020858:71014-71033 | None:intergenic | 30.0% |
| ! | ATGGATATTTGGAATGTGAT+TGG | + | tig0020858:71018-71037 | None:intergenic | 30.0% |
| AATCACATTCCAAATATCCA+TGG | - | tig0020858:71017-71036 | Msa1386720:intron | 30.0% | |
| TTAACTTCTCCATGGATATT+TGG | + | tig0020858:71029-71048 | None:intergenic | 30.0% | |
| !!! | CTCAATTTTTAACTTCTCCA+TGG | + | tig0020858:71037-71056 | None:intergenic | 30.0% |
| ATGACTTGATTTCTTCTCTT+TGG | + | tig0020858:71327-71346 | None:intergenic | 30.0% | |
| AAGAATGAATTCAGAATTGG+TGG | + | tig0020858:71540-71559 | None:intergenic | 30.0% | |
| GACAAGAATGAATTCAGAAT+TGG | + | tig0020858:71543-71562 | None:intergenic | 30.0% | |
| ACAACGAATTTGCATATGTT+TGG | - | tig0020858:71691-71710 | Msa1386720:intron | 30.0% | |
| TTTGCATATGTTTGGAAACA+CGG | - | tig0020858:71699-71718 | Msa1386720:intron | 30.0% | |
| AACAAAGGTTTCAATACTCT+AGG | + | tig0020858:71931-71950 | None:intergenic | 30.0% | |
| AACAATATCAGATTTCTCTG+TGG | + | tig0020858:71962-71981 | None:intergenic | 30.0% | |
| TTCATTTGTTTGATAGGTCA+AGG | - | tig0020858:71984-72003 | Msa1386720:intron | 30.0% | |
| ! | TTTGGTTTACTAATTCATGC+AGG | - | tig0020858:72223-72242 | Msa1386720:intron | 30.0% |
| TAATAGTTTCCATTTCTTGC+AGG | - | tig0020858:72450-72469 | Msa1386720:CDS | 30.0% | |
| ATGCTAGCAAAACTGAAAAA+TGG | + | tig0020858:72829-72848 | None:intergenic | 30.0% | |
| TAGGAACTGTATCTAGAAGA+GGG | + | tig0020858:69962-69981 | None:intergenic | 35.0% | |
| ! | ATGATGATTTGGGGTGTTTA+AGG | + | tig0020858:70057-70076 | None:intergenic | 35.0% |
| !!! | TCACCATTTTGGTTAATGTG+GGG | + | tig0020858:70147-70166 | None:intergenic | 35.0% |
| TCCTTCAGATGTTATTGCTA+AGG | - | tig0020858:70231-70250 | Msa1386720:CDS | 35.0% | |
| TCCTTAGCAATAACATCTGA+AGG | + | tig0020858:70235-70254 | None:intergenic | 35.0% | |
| TGAGAAGAAAGAGAAAGTGA+AGG | - | tig0020858:70330-70349 | Msa1386720:intron | 35.0% | |
| CATACGAAGTGATTTATGTC+TGG | - | tig0020858:70756-70775 | Msa1386720:intron | 35.0% | |
| !! | AATGTGATTGGTTGGTTTCA+TGG | + | tig0020858:71006-71025 | None:intergenic | 35.0% |
| ATGTGAGCTGAGAGTTAATT+TGG | + | tig0020858:71255-71274 | None:intergenic | 35.0% | |
| ATTTGCTTTGGTGAATTTGC+AGG | - | tig0020858:71273-71292 | Msa1386720:intron | 35.0% | |
| TGTTAGCTGTTCGAAGTTAT+AGG | - | tig0020858:71586-71605 | Msa1386720:intron | 35.0% | |
| CGAAGTTATAGGCTTAAGAT+TGG | - | tig0020858:71597-71616 | Msa1386720:intron | 35.0% | |
| GTTTCCAAACACACTATTCA+AGG | - | tig0020858:71803-71822 | Msa1386720:intron | 35.0% | |
| TCTGTGGAAGCTAAAAACAA+AGG | + | tig0020858:71946-71965 | None:intergenic | 35.0% | |
| TCCATGCTTAACACCTTATA+AGG | - | tig0020858:72295-72314 | Msa1386720:intron | 35.0% | |
| ! | ATGAATTTAGTTCGTTACCC+TGG | + | tig0020858:72336-72355 | None:intergenic | 35.0% |
| GAGTTAAAATCATCAAGCTC+AGG | + | tig0020858:72523-72542 | None:intergenic | 35.0% | |
| !!! | CTATTTTGTCGGTGTTATGA+TGG | + | tig0020858:72582-72601 | None:intergenic | 35.0% |
| CATCATAACACCGACAAAAT+AGG | - | tig0020858:72580-72599 | Msa1386720:CDS | 35.0% | |
| ! | GGTAGTGATTCCTATTTTGT+CGG | + | tig0020858:72593-72612 | None:intergenic | 35.0% |
| !! | CTGTGTTATTTGAGCAACTT+CGG | - | tig0020858:72761-72780 | Msa1386720:CDS | 35.0% |
| !! | TCCAACTTCTAAAACAGACA+CGG | + | tig0020858:72853-72872 | None:intergenic | 35.0% |
| GTAGGAACTGTATCTAGAAG+AGG | + | tig0020858:69963-69982 | None:intergenic | 40.0% | |
| TGTTGAAGAACGTGAATCGT+AGG | + | tig0020858:69981-70000 | None:intergenic | 40.0% | |
| !! | AGAGGGTTTAGCTTTGACAA+TGG | + | tig0020858:70098-70117 | None:intergenic | 40.0% |
| TGTAGCTCCAACAACAAAAG+TGG | - | tig0020858:70120-70139 | Msa1386720:three_prime_UTR | 40.0% | |
| AAACAACTTAGTAGTGGTGG+TGG | + | tig0020858:70209-70228 | None:intergenic | 40.0% | |
| AAGAAGCTGTTTGGGAAAAG+TGG | - | tig0020858:70301-70320 | Msa1386720:CDS | 40.0% | |
| AGAAGCTGTTTGGGAAAAGT+GGG | - | tig0020858:70302-70321 | Msa1386720:CDS | 40.0% | |
| ! | AAGGCTTTGACAGAAGTGAA+GGG | - | tig0020858:70349-70368 | Msa1386720:intron | 40.0% |
| ! | GAATACAAGGACACTTGCTA+TGG | - | tig0020858:70372-70391 | Msa1386720:intron | 40.0% |
| TTTGCAGGTAGAGAAGTTGA+AGG | - | tig0020858:71288-71307 | Msa1386720:intron | 40.0% | |
| GCTGAGAATTCGTAACATCT+GGG | + | tig0020858:71369-71388 | None:intergenic | 40.0% | |
| AGCTGAGAATTCGTAACATC+TGG | + | tig0020858:71370-71389 | None:intergenic | 40.0% | |
| TGTTACGAATTCTCAGCTTC+AGG | - | tig0020858:71372-71391 | Msa1386720:CDS | 40.0% | |
| TTATACCTCTGCAAGATCCT+CGG | + | tig0020858:71500-71519 | None:intergenic | 40.0% | |
| TCAGAATTGGTGGAATTGCT+AGG | + | tig0020858:71530-71549 | None:intergenic | 40.0% | |
| !! | CTTTGAGTTGACCATGTGTT+AGG | + | tig0020858:71733-71752 | None:intergenic | 40.0% |
| CAACTCAAAGCTAGTAGTTG+TGG | - | tig0020858:71743-71762 | Msa1386720:intron | 40.0% | |
| TTTGGAAACTTCAACTTCCC+CGG | + | tig0020858:71792-71811 | None:intergenic | 40.0% | |
| TCAACAAAAACAGGCTTCCA+AGG | - | tig0020858:72018-72037 | Msa1386720:intron | 40.0% | |
| AAAACAGGCTTCCAAGGTTA+TGG | - | tig0020858:72024-72043 | Msa1386720:intron | 40.0% | |
| TTGGAGAACTTCCATAACCT+TGG | + | tig0020858:72038-72057 | None:intergenic | 40.0% | |
| GGAAGATGCTTCAAACTCTT+GGG | - | tig0020858:72080-72099 | Msa1386720:intron | 40.0% | |
| ! | GCCTTATAAGGTGTTAAGCA+TGG | + | tig0020858:72299-72318 | None:intergenic | 40.0% |
| !! | CTTGACTTGTTGGCCTTATA+AGG | + | tig0020858:72311-72330 | None:intergenic | 40.0% |
| AGCCATTGATACCAATCAGA+CGG | + | tig0020858:72729-72748 | None:intergenic | 40.0% | |
| AGAGATGAGGAATCTCAACA+AGG | + | tig0020858:72795-72814 | None:intergenic | 40.0% | |
| GGAAACAAGGAAAAGAGATG+AGG | + | tig0020858:72808-72827 | None:intergenic | 40.0% | |
| !!! | ACCGTGTCTGTTTTAGAAGT+TGG | - | tig0020858:72849-72868 | Msa1386720:CDS | 40.0% |
| GCTCATGTGAACCATATACA+AGG | + | tig0020858:72920-72939 | None:intergenic | 40.0% | |
| TCTCTCTCTCTCTCTGCAAA+TGG | - | tig0020858:69916-69935 | Msa1386720:three_prime_UTR | 45.0% | |
| GTTGTTGGAGCTACACTAGA+GGG | + | tig0020858:70115-70134 | None:intergenic | 45.0% | |
| TGTTGTTGGAGCTACACTAG+AGG | + | tig0020858:70116-70135 | None:intergenic | 45.0% | |
| GGACCCCACATTAACCAAAA+TGG | - | tig0020858:70141-70160 | Msa1386720:exon | 45.0% | |
| !! | GTGGTGGTGTTCACAGATTT+TGG | + | tig0020858:70190-70209 | None:intergenic | 45.0% |
| AAGGATGCTAAAAGGGTCAC+CGG | - | tig0020858:70262-70281 | Msa1386720:CDS | 45.0% | |
| ACGTTGCAGAAGAAGCTGTT+TGG | - | tig0020858:70292-70311 | Msa1386720:CDS | 45.0% | |
| CGTTGCAGAAGAAGCTGTTT+GGG | - | tig0020858:70293-70312 | Msa1386720:CDS | 45.0% | |
| ! | GAAGGCTTTGACAGAAGTGA+AGG | - | tig0020858:70348-70367 | Msa1386720:intron | 45.0% |
| ! | AGGCTTTGACAGAAGTGAAG+GGG | - | tig0020858:70350-70369 | Msa1386720:intron | 45.0% |
| CAGAAGTGAAGGGGAATACA+AGG | - | tig0020858:70359-70378 | Msa1386720:intron | 45.0% | |
| ! | TATGGTGTTGAGGAGTGAGA+GGG | - | tig0020858:70390-70409 | Msa1386720:intron | 45.0% |
| GGAGCTTCTGAGTGTGAATA+AGG | - | tig0020858:70411-70430 | Msa1386720:intron | 45.0% | |
| GAGTGTGAATAAGGAGCAAG+AGG | - | tig0020858:70420-70439 | Msa1386720:intron | 45.0% | |
| TGTGAATAAGGAGCAAGAGG+AGG | - | tig0020858:70423-70442 | Msa1386720:intron | 45.0% | |
| ! | AGCAAGAGGAGGAGATTTTG+AGG | - | tig0020858:70434-70453 | Msa1386720:intron | 45.0% |
| !!! | GGAGGAGATTTTGAGGCTTA+AGG | - | tig0020858:70441-70460 | Msa1386720:intron | 45.0% |
| ! | AGTGGGAGTTCTAACAAGCT+AGG | + | tig0020858:70901-70920 | None:intergenic | 45.0% |
| GACAGCTTCATGAAACCCTA+AGG | + | tig0020858:71233-71252 | None:intergenic | 45.0% | |
| CTCTCAGCTCACATTTGCTT+TGG | - | tig0020858:71261-71280 | Msa1386720:intron | 45.0% | |
| ACTCGTAGAGAAGCAAAGCT+CGG | - | tig0020858:71396-71415 | Msa1386720:CDS | 45.0% | |
| GGAACTGAAAGAAGCAAAGC+AGG | - | tig0020858:71417-71436 | Msa1386720:CDS | 45.0% | |
| CATTCCATCTCTACAACAGC+AGG | - | tig0020858:71441-71460 | Msa1386720:CDS | 45.0% | |
| GAAACCTGCTGTTGTAGAGA+TGG | + | tig0020858:71448-71467 | None:intergenic | 45.0% | |
| TGGTGGAATTGCTAGGATGT+AGG | + | tig0020858:71523-71542 | None:intergenic | 45.0% | |
| AGCGCCTTGAATAGTGTGTT+TGG | + | tig0020858:71810-71829 | None:intergenic | 45.0% | |
| GGGAAGATGCTTCAAACTCT+TGG | - | tig0020858:72079-72098 | Msa1386720:intron | 45.0% | |
| !! | TACCCTGGATCTTGACTTGT+TGG | + | tig0020858:72321-72340 | None:intergenic | 45.0% |
| GCAGAGAATCCTGCAAGAAA+TGG | + | tig0020858:72462-72481 | None:intergenic | 45.0% | |
| TTTCTTGCAGGATTCTCTGC+TGG | - | tig0020858:72462-72481 | Msa1386720:CDS | 45.0% | |
| GCTGGATGAAAGCTTATCTG+AGG | - | tig0020858:72480-72499 | Msa1386720:CDS | 45.0% | |
| ! | ATCGGATCTTCGACTTGCTT+TGG | + | tig0020858:72614-72633 | None:intergenic | 45.0% |
| !! | TCTACCTCCAAGCTGTTTTG+CGG | + | tig0020858:72639-72658 | None:intergenic | 45.0% |
| AGCCGTCTGATTGGTATCAA+TGG | - | tig0020858:72724-72743 | Msa1386720:CDS | 45.0% | |
| !! | GTGGGGTCCACTTTTGTTGT+TGG | + | tig0020858:70130-70149 | None:intergenic | 50.0% |
| !! | CAACTTAGTAGTGGTGGTGG+TGG | + | tig0020858:70206-70225 | None:intergenic | 50.0% |
| AGGATGCTAAAAGGGTCACC+GGG | - | tig0020858:70263-70282 | Msa1386720:CDS | 50.0% | |
| CTTCTGCAACGTCGAAAACC+CGG | + | tig0020858:70284-70303 | None:intergenic | 50.0% | |
| !! | GGACACTTGCTATGGTGTTG+AGG | - | tig0020858:70380-70399 | Msa1386720:intron | 50.0% |
| ! | CTATGGTGTTGAGGAGTGAG+AGG | - | tig0020858:70389-70408 | Msa1386720:intron | 50.0% |
| CAGCAGGTTTCTTCTCTCAC+TGG | - | tig0020858:71457-71476 | Msa1386720:CDS | 50.0% | |
| CGAACAGCTAACACTGTGCA+TGG | + | tig0020858:71579-71598 | None:intergenic | 50.0% | |
| AGCACAAAGTGAGCTGACAC+CGG | - | tig0020858:71770-71789 | Msa1386720:intron | 50.0% | |
| !! | CATGCAGGAGTTTAGCTCTG+AGG | - | tig0020858:72238-72257 | Msa1386720:intron | 50.0% |
| AGGCCAACAAGTCAAGATCC+AGG | - | tig0020858:72315-72334 | Msa1386720:intron | 50.0% | |
| GGCCAACAAGTCAAGATCCA+GGG | - | tig0020858:72316-72335 | Msa1386720:intron | 50.0% | |
| !! | CCAAGCTGTTTTGCGGTCAT+CGG | + | tig0020858:72632-72651 | None:intergenic | 50.0% |
| ATGACCGCAAAACAGCTTGG+AGG | - | tig0020858:72632-72651 | Msa1386720:CDS | 50.0% | |
| ! | TGCGTTGACGCAGTTACAGT+TGG | - | tig0020858:72700-72719 | Msa1386720:CDS | 50.0% |
| TCAGCTTCAAAGCCTTGCCG+AGG | - | tig0020858:71480-71499 | Msa1386720:CDS | 55.0% | |
| CGGTGCATGCACCTAACACA+TGG | - | tig0020858:71719-71738 | Msa1386720:intron | 55.0% | |
| GCACAAAGTGAGCTGACACC+GGG | - | tig0020858:71771-71790 | Msa1386720:intron | 55.0% | |
| CACAAAGTGAGCTGACACCG+GGG | - | tig0020858:71772-71791 | Msa1386720:intron | 55.0% | |
| GCGCTGAGTGTTTGAATGCG+TGG | - | tig0020858:71825-71844 | Msa1386720:intron | 55.0% | |
| ! | CCATGTGCTGGTGGTGTTCT+TGG | + | tig0020858:72057-72076 | None:intergenic | 55.0% |
| CCAAGAACACCACCAGCACA+TGG | - | tig0020858:72054-72073 | Msa1386720:intron | 55.0% | |
| AACACCACCAGCACATGGCA+GGG | - | tig0020858:72059-72078 | Msa1386720:intron | 55.0% | |
| CAGCCACTTGCGCTAGATCA+CGG | + | tig0020858:72141-72160 | None:intergenic | 55.0% | |
| CCGATGACCGCAAAACAGCT+TGG | - | tig0020858:72629-72648 | Msa1386720:CDS | 55.0% | |
| ACAGTTGGCAGCCGTCTGAT+TGG | - | tig0020858:72715-72734 | Msa1386720:CDS | 55.0% | |
| CCTCTGCAAGATCCTCGGCA+AGG | + | tig0020858:71495-71514 | None:intergenic | 60.0% | |
| CCTTGCCGAGGATCTTGCAG+AGG | - | tig0020858:71492-71511 | Msa1386720:CDS | 60.0% | |
| GAACACCACCAGCACATGGC+AGG | - | tig0020858:72058-72077 | Msa1386720:intron | 60.0% | |
| TCTTCCCTGCCATGTGCTGG+TGG | + | tig0020858:72066-72085 | None:intergenic | 60.0% | |
| GCATCTTCCCTGCCATGTGC+TGG | + | tig0020858:72069-72088 | None:intergenic | 60.0% | |
| CCACTTGCGCTAGATCACGG+TGG | + | tig0020858:72138-72157 | None:intergenic | 60.0% | |
| CCACCGTGATCTAGCGCAAG+TGG | - | tig0020858:72135-72154 | Msa1386720:intron | 60.0% | |
| CGTGATCTAGCGCAAGTGGC+TGG | - | tig0020858:72139-72158 | Msa1386720:intron | 60.0% | |
| GCGCAAGTGGCTGGTGCACA+TGG | - | tig0020858:72148-72167 | Msa1386720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020858 | gene | 69844 | 72966 | 69844 | ID=Msa1386720;Name=Msa1386720 |
| tig0020858 | mRNA | 69844 | 72966 | 69844 | ID=Msa1386720-mRNA-1;Parent=Msa1386720;Name=Msa1386720-mRNA-1;_AED=0.08;_eAED=0.08;_QI=91|0.66|1|1|1|1|4|309|350 |
| tig0020858 | exon | 69844 | 70338 | 69844 | ID=Msa1386720-mRNA-1:exon:10344;Parent=Msa1386720-mRNA-1 |
| tig0020858 | exon | 70473 | 70565 | 70473 | ID=Msa1386720-mRNA-1:exon:10343;Parent=Msa1386720-mRNA-1 |
| tig0020858 | exon | 71297 | 71515 | 71297 | ID=Msa1386720-mRNA-1:exon:10342;Parent=Msa1386720-mRNA-1 |
| tig0020858 | exon | 72321 | 72966 | 72321 | ID=Msa1386720-mRNA-1:exon:10341;Parent=Msa1386720-mRNA-1 |
| tig0020858 | five_prime_UTR | 72876 | 72966 | 72876 | ID=Msa1386720-mRNA-1:five_prime_utr;Parent=Msa1386720-mRNA-1 |
| tig0020858 | CDS | 72321 | 72875 | 72321 | ID=Msa1386720-mRNA-1:cds;Parent=Msa1386720-mRNA-1 |
| tig0020858 | CDS | 71297 | 71515 | 71297 | ID=Msa1386720-mRNA-1:cds;Parent=Msa1386720-mRNA-1 |
| tig0020858 | CDS | 70473 | 70565 | 70473 | ID=Msa1386720-mRNA-1:cds;Parent=Msa1386720-mRNA-1 |
| tig0020858 | CDS | 70153 | 70338 | 70153 | ID=Msa1386720-mRNA-1:cds;Parent=Msa1386720-mRNA-1 |
| tig0020858 | three_prime_UTR | 69844 | 70152 | 69844 | ID=Msa1386720-mRNA-1:three_prime_utr;Parent=Msa1386720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
