Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277460 | XP_003594278.2 | 87.855 | 387 | 10 | 2 | 1 | 350 | 1 | 387 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277460 | G7IPB9 | 87.855 | 387 | 10 | 2 | 1 | 350 | 1 | 387 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0277460 | Msa0317170 | 0.834936 | 2.245992e-56 | -8.615850e-47 |
| Msa0277460 | Msa0909760 | 0.821185 | 4.618332e-53 | -8.615850e-47 |
| Msa0277460 | Msa1386720 | 0.970329 | 1.882734e-131 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277460 | MtrunA17_Chr2g0290311 | 87.855 | 387 | 10 | 2 | 1 | 350 | 1 | 387 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277460 | AT4G17240.1 | 48.750 | 320 | 109 | 10 | 10 | 298 | 2 | 297 | 4.70e-67 | 215 |
| Msa0277460 | AT4G17240.2 | 43.750 | 320 | 109 | 13 | 10 | 298 | 2 | 281 | 3.29e-49 | 168 |
Find 88 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATGATTTGGGGTGTTTA+AGG | 0.189107 | 2_3:+10052182 | None:intergenic |
| ATGACTTGATTTCTTCTCTT+TGG | 0.198265 | 2_3:+10050912 | None:intergenic |
| ATCCAATTCCATGTTTATTA+TGG | 0.209716 | 2_3:+10049572 | None:intergenic |
| CTTGACTTGTTGGCCTTATA+AGG | 0.240588 | 2_3:+10049928 | None:intergenic |
| GAATTATCTATCCTTGTATA+TGG | 0.261392 | 2_3:-10049330 | Msa0277460:three_prime_UTR |
| CATCATAACACCGACAAAAT+AGG | 0.264743 | 2_3:-10049656 | Msa0277460:CDS |
| TCCATGCTTAACACCTTATA+AGG | 0.301400 | 2_3:-10049941 | Msa0277460:CDS |
| TGAAGATGAAGATGATGATT+TGG | 0.302383 | 2_3:+10052171 | None:intergenic |
| GAAGATGAAGATGATGATTT+GGG | 0.304496 | 2_3:+10052172 | None:intergenic |
| GATTTAGATCTTTGAGTAAT+AGG | 0.306235 | 2_3:+10049962 | None:intergenic |
| GGAGCTTCTGAGTGTGAATA+AGG | 0.308937 | 2_3:-10051825 | Msa0277460:CDS |
| ATTTGAAGAAGGATGCTAAA+AGG | 0.318739 | 2_3:-10051982 | Msa0277460:CDS |
| GTGGTGGTGTTCACAGATTT+TGG | 0.322431 | 2_3:+10052049 | None:intergenic |
| GTTCATGTTGTTTAACTCAT+AGG | 0.323014 | 2_3:+10052204 | None:intergenic |
| AACCATAATAAACATGGAAT+TGG | 0.337866 | 2_3:-10049574 | Msa0277460:three_prime_UTR |
| TACCCTGGATCTTGACTTGT+TGG | 0.344307 | 2_3:+10049918 | None:intergenic |
| TGTTACGAATTCTCAGCTTC+AGG | 0.362474 | 2_3:-10050864 | Msa0277460:CDS |
| GGACCCCACATTAACCAAAA+TGG | 0.363148 | 2_3:-10052095 | Msa0277460:CDS |
| AGCTGAGAATTCGTAACATC+TGG | 0.381164 | 2_3:+10050869 | None:intergenic |
| TTTCTTGCAGGATTCTCTGC+TGG | 0.381599 | 2_3:-10049774 | Msa0277460:intron |
| AAGAAGCTGTTTGGGAAAAG+TGG | 0.391876 | 2_3:-10051935 | Msa0277460:CDS |
| ATCGGATCTTCGACTTGCTT+TGG | 0.396908 | 2_3:+10049625 | None:intergenic |
| CGTTGCAGAAGAAGCTGTTT+GGG | 0.404705 | 2_3:-10051943 | Msa0277460:CDS |
| ACGTTGCAGAAGAAGCTGTT+TGG | 0.421127 | 2_3:-10051944 | Msa0277460:CDS |
| TTTAACTCATAGGATGAAGA+TGG | 0.449077 | 2_3:+10052214 | None:intergenic |
| TCCTTCAGATGTTATTGCTA+AGG | 0.460464 | 2_3:-10052005 | Msa0277460:CDS |
| TTTGAAGAAGGATGCTAAAA+GGG | 0.483411 | 2_3:-10051981 | Msa0277460:CDS |
| AGGCCAACAAGTCAAGATCC+AGG | 0.484409 | 2_3:-10049921 | Msa0277460:CDS |
| CTGTGTTATTTGAGCAACTT+CGG | 0.485151 | 2_3:-10049475 | Msa0277460:three_prime_UTR |
| ACAGTTGGCAGCCGTCTGAT+TGG | 0.490813 | 2_3:-10049521 | Msa0277460:three_prime_UTR |
| GCCTTATAAGGTGTTAAGCA+TGG | 0.496148 | 2_3:+10049940 | None:intergenic |
| TATTGCTAAGGATTTGAAGA+AGG | 0.505246 | 2_3:-10051993 | Msa0277460:CDS |
| CATTCCATCTCTACAACAGC+AGG | 0.518931 | 2_3:-10050795 | Msa0277460:CDS |
| TGTAGCTCCAACAACAAAAG+TGG | 0.519732 | 2_3:-10052116 | Msa0277460:CDS |
| GAAACCTGCTGTTGTAGAGA+TGG | 0.525678 | 2_3:+10050791 | None:intergenic |
| CAGCAGGTTTCTTCTCTCAC+TGG | 0.533966 | 2_3:-10050779 | Msa0277460:CDS |
| AAGGATGCTAAAAGGGTCAC+CGG | 0.537473 | 2_3:-10051974 | Msa0277460:CDS |
| GAGTTAAAATCATCAAGCTC+AGG | 0.548017 | 2_3:+10049716 | None:intergenic |
| CTTCTGCAACGTCGAAAACC+CGG | 0.551326 | 2_3:+10051955 | None:intergenic |
| GATTGAGAATAAGAATAAAG+AGG | 0.551856 | 2_3:-10051768 | Msa0277460:intron |
| CAGAAGTGAAGGGGAATACA+AGG | 0.555355 | 2_3:-10051877 | Msa0277460:CDS |
| CCGATGACCGCAAAACAGCT+TGG | 0.555852 | 2_3:-10049607 | Msa0277460:CDS |
| GGAACTGAAAGAAGCAAAGC+AGG | 0.562796 | 2_3:-10050819 | Msa0277460:CDS |
| TCCTTAGCAATAACATCTGA+AGG | 0.563245 | 2_3:+10052004 | None:intergenic |
| TGTGAATAAGGAGCAAGAGG+AGG | 0.563942 | 2_3:-10051813 | Msa0277460:CDS |
| TGCGTTGACGCAGTTACAGT+TGG | 0.567574 | 2_3:-10049536 | Msa0277460:three_prime_UTR |
| GAAGGCTTTGACAGAAGTGA+AGG | 0.568228 | 2_3:-10051888 | Msa0277460:CDS |
| GAGTGTGAATAAGGAGCAAG+AGG | 0.571644 | 2_3:-10051816 | Msa0277460:CDS |
| GTTGTTGGAGCTACACTAGA+GGG | 0.572730 | 2_3:+10052124 | None:intergenic |
| AAACAACTTAGTAGTGGTGG+TGG | 0.573884 | 2_3:+10052030 | None:intergenic |
| AGCCGTCTGATTGGTATCAA+TGG | 0.574849 | 2_3:-10049512 | Msa0277460:three_prime_UTR |
| AGAAGCTGTTTGGGAAAAGT+GGG | 0.579536 | 2_3:-10051934 | Msa0277460:CDS |
| TTATACCTCTGAAAGATCCT+CGG | 0.584443 | 2_3:+10050739 | None:intergenic |
| TGTTGTTGGAGCTACACTAG+AGG | 0.585324 | 2_3:+10052123 | None:intergenic |
| AATAAACAACTTAGTAGTGG+TGG | 0.585481 | 2_3:+10052027 | None:intergenic |
| TTAACTCATAGGATGAAGAT+GGG | 0.589572 | 2_3:+10052215 | None:intergenic |
| GTAGGAACTGTATCTAGAAG+AGG | 0.589655 | 2_3:+10052276 | None:intergenic |
| TTTGCAGGTAGAGAAGTTGA+AGG | 0.592614 | 2_3:-10050948 | Msa0277460:intron |
| AGAGGGTTTAGCTTTGACAA+TGG | 0.595116 | 2_3:+10052141 | None:intergenic |
| GAATACAAGGACACTTGCTA+TGG | 0.596634 | 2_3:-10051864 | Msa0277460:CDS |
| TGTTGAAGAACGTGAATCGT+AGG | 0.596776 | 2_3:+10052258 | None:intergenic |
| TGAGAAGAAAGAGAAAGTGA+AGG | 0.599855 | 2_3:-10051906 | Msa0277460:CDS |
| GGACACTTGCTATGGTGTTG+AGG | 0.605195 | 2_3:-10051856 | Msa0277460:CDS |
| AGGAATAAACAACTTAGTAG+TGG | 0.605663 | 2_3:+10052024 | None:intergenic |
| AAGGCTTTGACAGAAGTGAA+GGG | 0.605869 | 2_3:-10051887 | Msa0277460:CDS |
| GCTGAGAATTCGTAACATCT+GGG | 0.609356 | 2_3:+10050870 | None:intergenic |
| GGCCAACAAGTCAAGATCCA+GGG | 0.610888 | 2_3:-10049920 | Msa0277460:intron |
| CTATGGTGTTGAGGAGTGAG+AGG | 0.615079 | 2_3:-10051847 | Msa0277460:CDS |
| TAGGAACTGTATCTAGAAGA+GGG | 0.617000 | 2_3:+10052277 | None:intergenic |
| GCTCATGTGAACCATATACA+AGG | 0.618434 | 2_3:+10049319 | None:intergenic |
| ATGACCGCAAAACAGCTTGG+AGG | 0.621082 | 2_3:-10049604 | Msa0277460:CDS |
| CAACTTAGTAGTGGTGGTGG+TGG | 0.624589 | 2_3:+10052033 | None:intergenic |
| AGCCATTGATACCAATCAGA+CGG | 0.627130 | 2_3:+10049510 | None:intergenic |
| GGAAACAAGGAAAAGAGATG+AGG | 0.627965 | 2_3:+10049431 | None:intergenic |
| CCTTGCCGAGGATCTTTCAG+AGG | 0.629438 | 2_3:-10050744 | Msa0277460:intron |
| ACTCGTAGAGAAGCAAAGCT+CGG | 0.632315 | 2_3:-10050840 | Msa0277460:CDS |
| AGAATGAACCATAATAAACA+TGG | 0.638228 | 2_3:-10049580 | Msa0277460:three_prime_UTR |
| AGGCTTTGACAGAAGTGAAG+GGG | 0.658233 | 2_3:-10051886 | Msa0277460:CDS |
| TTGATTTGAACTGAAGAACG+AGG | 0.661368 | 2_3:+10052389 | None:intergenic |
| CATGCAGGAGTTTAGCTCTG+AGG | 0.662092 | 2_3:-10049998 | Msa0277460:intron |
| TCAGCTTCAAAGCCTTGCCG+AGG | 0.664957 | 2_3:-10050756 | Msa0277460:CDS |
| CCTCTGAAAGATCCTCGGCA+AGG | 0.669376 | 2_3:+10050744 | None:intergenic |
| AGGATGCTAAAAGGGTCACC+GGG | 0.670222 | 2_3:-10051973 | Msa0277460:CDS |
| TCCAACTTCTAAAACAGACA+CGG | 0.674788 | 2_3:+10049386 | None:intergenic |
| GCTGGATGAAAGCTTATCTG+AGG | 0.675802 | 2_3:-10049756 | Msa0277460:CDS |
| AAGATGAAGATGATGATTTG+GGG | 0.693085 | 2_3:+10052173 | None:intergenic |
| AGAGATGAGGAATCTCAACA+AGG | 0.703409 | 2_3:+10049444 | None:intergenic |
| TATGGTGTTGAGGAGTGAGA+GGG | 0.723717 | 2_3:-10051846 | Msa0277460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTAATTTTGATATGTT+TGG | + | chr2_3:10050396-10050415 | None:intergenic | 10.0% |
| !!! | TTTGAATTTGAAAAATATTT+TGG | - | chr2_3:10051649-10051668 | Msa0277460:intron | 10.0% |
| !!! | AACTCACTTTTAACTAAAAT+CGG | + | chr2_3:10050179-10050198 | None:intergenic | 20.0% |
| !!! | TGAAATTGATTTTTACAAGT+GGG | + | chr2_3:10050362-10050381 | None:intergenic | 20.0% |
| !!! | TTGAAATTGATTTTTACAAG+TGG | + | chr2_3:10050363-10050382 | None:intergenic | 20.0% |
| !! | ATAAGTTATTGTCTAACTAA+AGG | - | chr2_3:10050611-10050630 | Msa0277460:intron | 20.0% |
| !! | TAAGTTATTGTCTAACTAAA+GGG | - | chr2_3:10050612-10050631 | Msa0277460:intron | 20.0% |
| !!! | TGTTTTTTCATTTGTTTGAT+AGG | - | chr2_3:10051422-10051441 | Msa0277460:intron | 20.0% |
| !! | GAAAAATGCATAAATTAGTA+AGG | + | chr2_3:10051811-10051830 | None:intergenic | 20.0% |
| !! | CATGAAATTTTTCACCATTT+TGG | + | chr2_3:10049602-10049621 | None:intergenic | 25.0% |
| ! | GATTGAGAATAAGAATAAAG+AGG | - | chr2_3:10049912-10049931 | Msa0277460:intron | 25.0% |
| !! | TTGAATCTGATTTGCAATTA+TGG | - | chr2_3:10049959-10049978 | Msa0277460:CDS | 25.0% |
| !! | TGAATCTGATTTGCAATTAT+GGG | - | chr2_3:10049960-10049979 | Msa0277460:CDS | 25.0% |
| !!! | TAATTGTTTTACCTCAGAAA+TGG | - | chr2_3:10050058-10050077 | Msa0277460:intron | 25.0% |
| ! | ATCAAAAAAAACCATTTCTG+AGG | + | chr2_3:10050072-10050091 | None:intergenic | 25.0% |
| !!! | TAGTTTTAGATTTGTGTGTT+TGG | - | chr2_3:10050121-10050140 | Msa0277460:intron | 25.0% |
| ! | AAAAGTGACAAGATTATGAA+AGG | - | chr2_3:10050235-10050254 | Msa0277460:intron | 25.0% |
| ! | ATTTGTGCAAAAATCAAGTT+TGG | - | chr2_3:10050302-10050321 | Msa0277460:intron | 25.0% |
| ! | GAAGTTAAAAATTGAGATAC+TGG | - | chr2_3:10050485-10050504 | Msa0277460:intron | 25.0% |
| !!! | TTGTTATTTCTTTGTTCCTT+AGG | - | chr2_3:10050658-10050677 | Msa0277460:intron | 25.0% |
| !!! | TGTTATTTCTTTGTTCCTTA+GGG | - | chr2_3:10050659-10050678 | Msa0277460:intron | 25.0% |
| ! | TATAAAAGCAAACTTGGATT+TGG | + | chr2_3:10051073-10051092 | None:intergenic | 25.0% |
| ! | ATCAGATATAAAAGCAAACT+TGG | + | chr2_3:10051079-10051098 | None:intergenic | 25.0% |
| ! | GATAAGTATTCAACAAAAAC+AGG | - | chr2_3:10051453-10051472 | Msa0277460:intron | 25.0% |
| ! | GATTTAGATCTTTGAGTAAT+AGG | + | chr2_3:10051721-10051740 | None:intergenic | 25.0% |
| ! | AGAATGAACCATAATAAACA+TGG | - | chr2_3:10052100-10052119 | Msa0277460:CDS | 25.0% |
| ! | AACCATAATAAACATGGAAT+TGG | - | chr2_3:10052106-10052125 | Msa0277460:CDS | 25.0% |
| ! | ATCCAATTCCATGTTTATTA+TGG | + | chr2_3:10052111-10052130 | None:intergenic | 25.0% |
| ! | AAAACTGAAAAATGGAAACA+AGG | + | chr2_3:10052265-10052284 | None:intergenic | 25.0% |
| ! | GAATTATCTATCCTTGTATA+TGG | - | chr2_3:10052350-10052369 | Msa0277460:five_prime_UTR | 25.0% |
| TTAACTCATAGGATGAAGAT+GGG | + | chr2_3:10049468-10049487 | None:intergenic | 30.0% | |
| TTTAACTCATAGGATGAAGA+TGG | + | chr2_3:10049469-10049488 | None:intergenic | 30.0% | |
| ! | GTTCATGTTGTTTAACTCAT+AGG | + | chr2_3:10049479-10049498 | None:intergenic | 30.0% |
| AAGATGAAGATGATGATTTG+GGG | + | chr2_3:10049510-10049529 | None:intergenic | 30.0% | |
| GAAGATGAAGATGATGATTT+GGG | + | chr2_3:10049511-10049530 | None:intergenic | 30.0% | |
| TGAAGATGAAGATGATGATT+TGG | + | chr2_3:10049512-10049531 | None:intergenic | 30.0% | |
| !!! | TTCACCATTTTGGTTAATGT+GGG | + | chr2_3:10049592-10049611 | None:intergenic | 30.0% |
| !!! | TTTCACCATTTTGGTTAATG+TGG | + | chr2_3:10049593-10049612 | None:intergenic | 30.0% |
| AATAAACAACTTAGTAGTGG+TGG | + | chr2_3:10049656-10049675 | None:intergenic | 30.0% | |
| AGGAATAAACAACTTAGTAG+TGG | + | chr2_3:10049659-10049678 | None:intergenic | 30.0% | |
| TATTGCTAAGGATTTGAAGA+AGG | - | chr2_3:10049687-10049706 | Msa0277460:CDS | 30.0% | |
| ATTTGAAGAAGGATGCTAAA+AGG | - | chr2_3:10049698-10049717 | Msa0277460:CDS | 30.0% | |
| TTTGAAGAAGGATGCTAAAA+GGG | - | chr2_3:10049699-10049718 | Msa0277460:CDS | 30.0% | |
| ! | ATATTTGGAATGTGATTGGT+TGG | + | chr2_3:10050458-10050477 | None:intergenic | 30.0% |
| ! | ATGGATATTTGGAATGTGAT+TGG | + | chr2_3:10050462-10050481 | None:intergenic | 30.0% |
| AATCACATTCCAAATATCCA+TGG | - | chr2_3:10050461-10050480 | Msa0277460:intron | 30.0% | |
| TTAACTTCTCCATGGATATT+TGG | + | chr2_3:10050473-10050492 | None:intergenic | 30.0% | |
| !!! | CTCAATTTTTAACTTCTCCA+TGG | + | chr2_3:10050481-10050500 | None:intergenic | 30.0% |
| ATGACTTGATTTCTTCTCTT+TGG | + | chr2_3:10050771-10050790 | None:intergenic | 30.0% | |
| AAGAATGAATTCAGAATTGG+TGG | + | chr2_3:10050984-10051003 | None:intergenic | 30.0% | |
| GACAAGAATGAATTCAGAAT+TGG | + | chr2_3:10050987-10051006 | None:intergenic | 30.0% | |
| ACAACGAATTTGCATATGTT+TGG | - | chr2_3:10051135-10051154 | Msa0277460:intron | 30.0% | |
| TTTGCATATGTTTGGAAACA+CGG | - | chr2_3:10051143-10051162 | Msa0277460:intron | 30.0% | |
| AACAAAGGTTTCAATACTCT+AGG | + | chr2_3:10051375-10051394 | None:intergenic | 30.0% | |
| AACAATATCAGATTTCTCTG+TGG | + | chr2_3:10051406-10051425 | None:intergenic | 30.0% | |
| TTCATTTGTTTGATAGGTCA+AGG | - | chr2_3:10051428-10051447 | Msa0277460:intron | 30.0% | |
| ! | TTTGGTTTACTAATTCATGC+AGG | - | chr2_3:10051667-10051686 | Msa0277460:intron | 30.0% |
| TAATAGTTTCCATTTCTTGC+AGG | - | chr2_3:10051894-10051913 | Msa0277460:CDS | 30.0% | |
| ATGCTAGCAAAACTGAAAAA+TGG | + | chr2_3:10052273-10052292 | None:intergenic | 30.0% | |
| TAGGAACTGTATCTAGAAGA+GGG | + | chr2_3:10049406-10049425 | None:intergenic | 35.0% | |
| ! | ATGATGATTTGGGGTGTTTA+AGG | + | chr2_3:10049501-10049520 | None:intergenic | 35.0% |
| !!! | TCACCATTTTGGTTAATGTG+GGG | + | chr2_3:10049591-10049610 | None:intergenic | 35.0% |
| TCCTTCAGATGTTATTGCTA+AGG | - | chr2_3:10049675-10049694 | Msa0277460:CDS | 35.0% | |
| TCCTTAGCAATAACATCTGA+AGG | + | chr2_3:10049679-10049698 | None:intergenic | 35.0% | |
| TGAGAAGAAAGAGAAAGTGA+AGG | - | chr2_3:10049774-10049793 | Msa0277460:intron | 35.0% | |
| CATACGAAGTGATTTATGTC+TGG | - | chr2_3:10050200-10050219 | Msa0277460:intron | 35.0% | |
| !! | AATGTGATTGGTTGGTTTCA+TGG | + | chr2_3:10050450-10050469 | None:intergenic | 35.0% |
| ATGTGAGCTGAGAGTTAATT+TGG | + | chr2_3:10050699-10050718 | None:intergenic | 35.0% | |
| ATTTGCTTTGGTGAATTTGC+AGG | - | chr2_3:10050717-10050736 | Msa0277460:intron | 35.0% | |
| ! | TTATACCTCTGAAAGATCCT+CGG | + | chr2_3:10050944-10050963 | None:intergenic | 35.0% |
| TGTTAGCTGTTCGAAGTTAT+AGG | - | chr2_3:10051030-10051049 | Msa0277460:intron | 35.0% | |
| CGAAGTTATAGGCTTAAGAT+TGG | - | chr2_3:10051041-10051060 | Msa0277460:intron | 35.0% | |
| GTTTCCAAACACACTATTCA+AGG | - | chr2_3:10051247-10051266 | Msa0277460:intron | 35.0% | |
| TCTGTGGAAGCTAAAAACAA+AGG | + | chr2_3:10051390-10051409 | None:intergenic | 35.0% | |
| TCCATGCTTAACACCTTATA+AGG | - | chr2_3:10051739-10051758 | Msa0277460:intron | 35.0% | |
| ! | ATGAATTTAGTTCGTTACCC+TGG | + | chr2_3:10051780-10051799 | None:intergenic | 35.0% |
| GAGTTAAAATCATCAAGCTC+AGG | + | chr2_3:10051967-10051986 | None:intergenic | 35.0% | |
| !!! | CTATTTTGTCGGTGTTATGA+TGG | + | chr2_3:10052026-10052045 | None:intergenic | 35.0% |
| CATCATAACACCGACAAAAT+AGG | - | chr2_3:10052024-10052043 | Msa0277460:CDS | 35.0% | |
| ! | GGTAGTGATTCCTATTTTGT+CGG | + | chr2_3:10052037-10052056 | None:intergenic | 35.0% |
| !! | CTGTGTTATTTGAGCAACTT+CGG | - | chr2_3:10052205-10052224 | Msa0277460:CDS | 35.0% |
| !! | TCCAACTTCTAAAACAGACA+CGG | + | chr2_3:10052297-10052316 | None:intergenic | 35.0% |
| GTAGGAACTGTATCTAGAAG+AGG | + | chr2_3:10049407-10049426 | None:intergenic | 40.0% | |
| TGTTGAAGAACGTGAATCGT+AGG | + | chr2_3:10049425-10049444 | None:intergenic | 40.0% | |
| !! | AGAGGGTTTAGCTTTGACAA+TGG | + | chr2_3:10049542-10049561 | None:intergenic | 40.0% |
| TGTAGCTCCAACAACAAAAG+TGG | - | chr2_3:10049564-10049583 | Msa0277460:three_prime_UTR | 40.0% | |
| AAACAACTTAGTAGTGGTGG+TGG | + | chr2_3:10049653-10049672 | None:intergenic | 40.0% | |
| AAGAAGCTGTTTGGGAAAAG+TGG | - | chr2_3:10049745-10049764 | Msa0277460:CDS | 40.0% | |
| AGAAGCTGTTTGGGAAAAGT+GGG | - | chr2_3:10049746-10049765 | Msa0277460:CDS | 40.0% | |
| ! | AAGGCTTTGACAGAAGTGAA+GGG | - | chr2_3:10049793-10049812 | Msa0277460:intron | 40.0% |
| ! | GAATACAAGGACACTTGCTA+TGG | - | chr2_3:10049816-10049835 | Msa0277460:intron | 40.0% |
| TTTGCAGGTAGAGAAGTTGA+AGG | - | chr2_3:10050732-10050751 | Msa0277460:intron | 40.0% | |
| GCTGAGAATTCGTAACATCT+GGG | + | chr2_3:10050813-10050832 | None:intergenic | 40.0% | |
| AGCTGAGAATTCGTAACATC+TGG | + | chr2_3:10050814-10050833 | None:intergenic | 40.0% | |
| TGTTACGAATTCTCAGCTTC+AGG | - | chr2_3:10050816-10050835 | Msa0277460:CDS | 40.0% | |
| TCAGAATTGGTGGAATTGCT+AGG | + | chr2_3:10050974-10050993 | None:intergenic | 40.0% | |
| !! | CTTTGAGTTGACCATGTGTT+AGG | + | chr2_3:10051177-10051196 | None:intergenic | 40.0% |
| CAACTCAAAGCTAGTAGTTG+TGG | - | chr2_3:10051187-10051206 | Msa0277460:intron | 40.0% | |
| TTTGGAAACTTCAACTTCCC+CGG | + | chr2_3:10051236-10051255 | None:intergenic | 40.0% | |
| TCAACAAAAACAGGCTTCCA+AGG | - | chr2_3:10051462-10051481 | Msa0277460:intron | 40.0% | |
| AAAACAGGCTTCCAAGGTTA+TGG | - | chr2_3:10051468-10051487 | Msa0277460:intron | 40.0% | |
| TTGGAGAACTTCCATAACCT+TGG | + | chr2_3:10051482-10051501 | None:intergenic | 40.0% | |
| GGAAGATGCTTCAAACTCTT+GGG | - | chr2_3:10051524-10051543 | Msa0277460:intron | 40.0% | |
| ! | GCCTTATAAGGTGTTAAGCA+TGG | + | chr2_3:10051743-10051762 | None:intergenic | 40.0% |
| !! | CTTGACTTGTTGGCCTTATA+AGG | + | chr2_3:10051755-10051774 | None:intergenic | 40.0% |
| AGCCATTGATACCAATCAGA+CGG | + | chr2_3:10052173-10052192 | None:intergenic | 40.0% | |
| AGAGATGAGGAATCTCAACA+AGG | + | chr2_3:10052239-10052258 | None:intergenic | 40.0% | |
| GGAAACAAGGAAAAGAGATG+AGG | + | chr2_3:10052252-10052271 | None:intergenic | 40.0% | |
| !!! | ACCGTGTCTGTTTTAGAAGT+TGG | - | chr2_3:10052293-10052312 | Msa0277460:CDS | 40.0% |
| GCTCATGTGAACCATATACA+AGG | + | chr2_3:10052364-10052383 | None:intergenic | 40.0% | |
| TCTCTCTCTCTCTCTGCAAA+TGG | - | chr2_3:10049360-10049379 | Msa0277460:three_prime_UTR | 45.0% | |
| GTTGTTGGAGCTACACTAGA+GGG | + | chr2_3:10049559-10049578 | None:intergenic | 45.0% | |
| TGTTGTTGGAGCTACACTAG+AGG | + | chr2_3:10049560-10049579 | None:intergenic | 45.0% | |
| GGACCCCACATTAACCAAAA+TGG | - | chr2_3:10049585-10049604 | Msa0277460:exon | 45.0% | |
| !! | GTGGTGGTGTTCACAGATTT+TGG | + | chr2_3:10049634-10049653 | None:intergenic | 45.0% |
| AAGGATGCTAAAAGGGTCAC+CGG | - | chr2_3:10049706-10049725 | Msa0277460:CDS | 45.0% | |
| ACGTTGCAGAAGAAGCTGTT+TGG | - | chr2_3:10049736-10049755 | Msa0277460:CDS | 45.0% | |
| CGTTGCAGAAGAAGCTGTTT+GGG | - | chr2_3:10049737-10049756 | Msa0277460:CDS | 45.0% | |
| ! | GAAGGCTTTGACAGAAGTGA+AGG | - | chr2_3:10049792-10049811 | Msa0277460:intron | 45.0% |
| ! | AGGCTTTGACAGAAGTGAAG+GGG | - | chr2_3:10049794-10049813 | Msa0277460:intron | 45.0% |
| CAGAAGTGAAGGGGAATACA+AGG | - | chr2_3:10049803-10049822 | Msa0277460:intron | 45.0% | |
| ! | TATGGTGTTGAGGAGTGAGA+GGG | - | chr2_3:10049834-10049853 | Msa0277460:intron | 45.0% |
| GGAGCTTCTGAGTGTGAATA+AGG | - | chr2_3:10049855-10049874 | Msa0277460:intron | 45.0% | |
| GAGTGTGAATAAGGAGCAAG+AGG | - | chr2_3:10049864-10049883 | Msa0277460:intron | 45.0% | |
| TGTGAATAAGGAGCAAGAGG+AGG | - | chr2_3:10049867-10049886 | Msa0277460:intron | 45.0% | |
| ! | AGCAAGAGGAGGAGATTTTG+AGG | - | chr2_3:10049878-10049897 | Msa0277460:intron | 45.0% |
| !!! | GGAGGAGATTTTGAGGCTTA+AGG | - | chr2_3:10049885-10049904 | Msa0277460:intron | 45.0% |
| ! | AGTGGGAGTTCTAACAAGCT+AGG | + | chr2_3:10050345-10050364 | None:intergenic | 45.0% |
| GACAGCTTCATGAAACCCTA+AGG | + | chr2_3:10050677-10050696 | None:intergenic | 45.0% | |
| CTCTCAGCTCACATTTGCTT+TGG | - | chr2_3:10050705-10050724 | Msa0277460:intron | 45.0% | |
| ACTCGTAGAGAAGCAAAGCT+CGG | - | chr2_3:10050840-10050859 | Msa0277460:CDS | 45.0% | |
| GGAACTGAAAGAAGCAAAGC+AGG | - | chr2_3:10050861-10050880 | Msa0277460:CDS | 45.0% | |
| CATTCCATCTCTACAACAGC+AGG | - | chr2_3:10050885-10050904 | Msa0277460:CDS | 45.0% | |
| GAAACCTGCTGTTGTAGAGA+TGG | + | chr2_3:10050892-10050911 | None:intergenic | 45.0% | |
| TGGTGGAATTGCTAGGATGT+AGG | + | chr2_3:10050967-10050986 | None:intergenic | 45.0% | |
| AGCGCCTTGAATAGTGTGTT+TGG | + | chr2_3:10051254-10051273 | None:intergenic | 45.0% | |
| GGGAAGATGCTTCAAACTCT+TGG | - | chr2_3:10051523-10051542 | Msa0277460:intron | 45.0% | |
| !! | TACCCTGGATCTTGACTTGT+TGG | + | chr2_3:10051765-10051784 | None:intergenic | 45.0% |
| GCAGAGAATCCTGCAAGAAA+TGG | + | chr2_3:10051906-10051925 | None:intergenic | 45.0% | |
| TTTCTTGCAGGATTCTCTGC+TGG | - | chr2_3:10051906-10051925 | Msa0277460:CDS | 45.0% | |
| GCTGGATGAAAGCTTATCTG+AGG | - | chr2_3:10051924-10051943 | Msa0277460:CDS | 45.0% | |
| ! | ATCGGATCTTCGACTTGCTT+TGG | + | chr2_3:10052058-10052077 | None:intergenic | 45.0% |
| !! | TCTACCTCCAAGCTGTTTTG+CGG | + | chr2_3:10052083-10052102 | None:intergenic | 45.0% |
| AGCCGTCTGATTGGTATCAA+TGG | - | chr2_3:10052168-10052187 | Msa0277460:CDS | 45.0% | |
| !! | GTGGGGTCCACTTTTGTTGT+TGG | + | chr2_3:10049574-10049593 | None:intergenic | 50.0% |
| !! | CAACTTAGTAGTGGTGGTGG+TGG | + | chr2_3:10049650-10049669 | None:intergenic | 50.0% |
| AGGATGCTAAAAGGGTCACC+GGG | - | chr2_3:10049707-10049726 | Msa0277460:CDS | 50.0% | |
| CTTCTGCAACGTCGAAAACC+CGG | + | chr2_3:10049728-10049747 | None:intergenic | 50.0% | |
| !! | GGACACTTGCTATGGTGTTG+AGG | - | chr2_3:10049824-10049843 | Msa0277460:intron | 50.0% |
| ! | CTATGGTGTTGAGGAGTGAG+AGG | - | chr2_3:10049833-10049852 | Msa0277460:intron | 50.0% |
| CAGCAGGTTTCTTCTCTCAC+TGG | - | chr2_3:10050901-10050920 | Msa0277460:CDS | 50.0% | |
| CGAACAGCTAACACTGTGCA+TGG | + | chr2_3:10051023-10051042 | None:intergenic | 50.0% | |
| AGCACAAAGTGAGCTGACAC+CGG | - | chr2_3:10051214-10051233 | Msa0277460:intron | 50.0% | |
| !! | CATGCAGGAGTTTAGCTCTG+AGG | - | chr2_3:10051682-10051701 | Msa0277460:intron | 50.0% |
| AGGCCAACAAGTCAAGATCC+AGG | - | chr2_3:10051759-10051778 | Msa0277460:intron | 50.0% | |
| GGCCAACAAGTCAAGATCCA+GGG | - | chr2_3:10051760-10051779 | Msa0277460:intron | 50.0% | |
| !! | CCAAGCTGTTTTGCGGTCAT+CGG | + | chr2_3:10052076-10052095 | None:intergenic | 50.0% |
| ATGACCGCAAAACAGCTTGG+AGG | - | chr2_3:10052076-10052095 | Msa0277460:CDS | 50.0% | |
| ! | TGCGTTGACGCAGTTACAGT+TGG | - | chr2_3:10052144-10052163 | Msa0277460:CDS | 50.0% |
| TCAGCTTCAAAGCCTTGCCG+AGG | - | chr2_3:10050924-10050943 | Msa0277460:CDS | 55.0% | |
| ! | CCTCTGAAAGATCCTCGGCA+AGG | + | chr2_3:10050939-10050958 | None:intergenic | 55.0% |
| CCTTGCCGAGGATCTTTCAG+AGG | - | chr2_3:10050936-10050955 | Msa0277460:CDS | 55.0% | |
| CGGTGCATGCACCTAACACA+TGG | - | chr2_3:10051163-10051182 | Msa0277460:intron | 55.0% | |
| GCACAAAGTGAGCTGACACC+GGG | - | chr2_3:10051215-10051234 | Msa0277460:intron | 55.0% | |
| CACAAAGTGAGCTGACACCG+GGG | - | chr2_3:10051216-10051235 | Msa0277460:intron | 55.0% | |
| GCGCTGAGTGTTTGAATGCG+TGG | - | chr2_3:10051269-10051288 | Msa0277460:intron | 55.0% | |
| ! | CCATGTGCTGGTGGTGTTCT+TGG | + | chr2_3:10051501-10051520 | None:intergenic | 55.0% |
| CCAAGAACACCACCAGCACA+TGG | - | chr2_3:10051498-10051517 | Msa0277460:intron | 55.0% | |
| AACACCACCAGCACATGGCA+GGG | - | chr2_3:10051503-10051522 | Msa0277460:intron | 55.0% | |
| CAGCCACTTGCGCTAGATCA+CGG | + | chr2_3:10051585-10051604 | None:intergenic | 55.0% | |
| CCGATGACCGCAAAACAGCT+TGG | - | chr2_3:10052073-10052092 | Msa0277460:CDS | 55.0% | |
| ACAGTTGGCAGCCGTCTGAT+TGG | - | chr2_3:10052159-10052178 | Msa0277460:CDS | 55.0% | |
| GAACACCACCAGCACATGGC+AGG | - | chr2_3:10051502-10051521 | Msa0277460:intron | 60.0% | |
| TCTTCCCTGCCATGTGCTGG+TGG | + | chr2_3:10051510-10051529 | None:intergenic | 60.0% | |
| GCATCTTCCCTGCCATGTGC+TGG | + | chr2_3:10051513-10051532 | None:intergenic | 60.0% | |
| CCACTTGCGCTAGATCACGG+TGG | + | chr2_3:10051582-10051601 | None:intergenic | 60.0% | |
| CCACCGTGATCTAGCGCAAG+TGG | - | chr2_3:10051579-10051598 | Msa0277460:intron | 60.0% | |
| CGTGATCTAGCGCAAGTGGC+TGG | - | chr2_3:10051583-10051602 | Msa0277460:intron | 60.0% | |
| GCGCAAGTGGCTGGTGCACA+TGG | - | chr2_3:10051592-10051611 | Msa0277460:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 10049292 | 10052410 | 10049292 | ID=Msa0277460;Name=Msa0277460 |
| chr2_3 | mRNA | 10049292 | 10052410 | 10049292 | ID=Msa0277460-mRNA-1;Parent=Msa0277460;Name=Msa0277460-mRNA-1;_AED=0.08;_eAED=0.08;_QI=87|0.66|1|1|1|1|4|309|350 |
| chr2_3 | exon | 10049292 | 10049786 | 10049292 | ID=Msa0277460-mRNA-1:exon:4489;Parent=Msa0277460-mRNA-1 |
| chr2_3 | exon | 10049921 | 10050013 | 10049921 | ID=Msa0277460-mRNA-1:exon:4488;Parent=Msa0277460-mRNA-1 |
| chr2_3 | exon | 10050745 | 10050963 | 10050745 | ID=Msa0277460-mRNA-1:exon:4487;Parent=Msa0277460-mRNA-1 |
| chr2_3 | exon | 10051769 | 10052410 | 10051769 | ID=Msa0277460-mRNA-1:exon:4486;Parent=Msa0277460-mRNA-1 |
| chr2_3 | five_prime_UTR | 10052324 | 10052410 | 10052324 | ID=Msa0277460-mRNA-1:five_prime_utr;Parent=Msa0277460-mRNA-1 |
| chr2_3 | CDS | 10051769 | 10052323 | 10051769 | ID=Msa0277460-mRNA-1:cds;Parent=Msa0277460-mRNA-1 |
| chr2_3 | CDS | 10050745 | 10050963 | 10050745 | ID=Msa0277460-mRNA-1:cds;Parent=Msa0277460-mRNA-1 |
| chr2_3 | CDS | 10049921 | 10050013 | 10049921 | ID=Msa0277460-mRNA-1:cds;Parent=Msa0277460-mRNA-1 |
| chr2_3 | CDS | 10049601 | 10049786 | 10049601 | ID=Msa0277460-mRNA-1:cds;Parent=Msa0277460-mRNA-1 |
| chr2_3 | three_prime_UTR | 10049292 | 10049600 | 10049292 | ID=Msa0277460-mRNA-1:three_prime_utr;Parent=Msa0277460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
