Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317170 | XP_003594278.2 | 96.641 | 387 | 10 | 1 | 1 | 384 | 1 | 387 | 0.0 | 750 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034830 | Msa0317170 | 0.800199 | 1.612111e-48 | -8.615850e-47 |
| Msa0115550 | Msa0317170 | 0.801357 | 9.355657e-49 | -8.615850e-47 |
| Msa0125590 | Msa0317170 | 0.815289 | 9.977059e-52 | -8.615850e-47 |
| Msa0170070 | Msa0317170 | 0.803132 | 4.032590e-49 | -8.615850e-47 |
| Msa0277460 | Msa0317170 | 0.834936 | 2.245992e-56 | -8.615850e-47 |
| Msa0317170 | Msa0373170 | 0.805233 | 1.473851e-49 | -8.615850e-47 |
| Msa0317170 | Msa0382230 | 0.802353 | 5.842285e-49 | -8.615850e-47 |
| Msa0317170 | Msa0404770 | 0.803783 | 2.956429e-49 | -8.615850e-47 |
| Msa0317170 | Msa0467690 | 0.803132 | 4.034086e-49 | -8.615850e-47 |
| Msa0317170 | Msa0476280 | 0.800794 | 1.219282e-48 | -8.615850e-47 |
| Msa0317170 | Msa0514020 | 0.806319 | 8.716067e-50 | -8.615850e-47 |
| Msa0317170 | Msa0520680 | 0.805027 | 1.627657e-49 | -8.615850e-47 |
| Msa0317170 | Msa0572830 | 0.805965 | 1.034680e-49 | -8.615850e-47 |
| Msa0317170 | Msa0900760 | 0.823556 | 1.299534e-53 | -8.615850e-47 |
| Msa0317170 | Msa0909760 | 0.838990 | 2.070921e-57 | -8.615850e-47 |
| Msa0317170 | Msa0926310 | 0.825019 | 5.888285e-54 | -8.615850e-47 |
| Msa0317170 | Msa1000780 | 0.828125 | 1.069520e-54 | -8.615850e-47 |
| Msa0317170 | Msa1383310 | 0.801165 | 1.023894e-48 | -8.615850e-47 |
| Msa0317170 | Msa1386720 | 0.828203 | 1.024574e-54 | -8.615850e-47 |
| Msa0317170 | Msa1387500 | 0.808890 | 2.479370e-50 | -8.615850e-47 |
| Msa0317170 | Msa1399190 | 0.838194 | 3.323441e-57 | -8.615850e-47 |
| Msa0317170 | Msa1439730 | 0.810699 | 1.012433e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317170 | MtrunA17_Chr2g0290311 | 96.641 | 387 | 10 | 1 | 1 | 384 | 1 | 387 | 0.0 | 750 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317170 | AT4G17240.1 | 49.245 | 331 | 125 | 10 | 10 | 332 | 2 | 297 | 1.25e-73 | 233 |
| Msa0317170 | AT4G17240.2 | 44.109 | 331 | 126 | 13 | 10 | 332 | 2 | 281 | 2.54e-54 | 182 |
Find 92 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACTTGATTTCTTCTCTT+TGG | 0.198265 | 2_4:+14750111 | None:intergenic |
| ATCCAATTCCATGTTTATTA+TGG | 0.209716 | 2_4:+14748771 | None:intergenic |
| ATGATGATTTGGGGTGTTTA+AGG | 0.210355 | 2_4:+14751379 | None:intergenic |
| CCATGTGCTGGTGGTGTTCT+TGG | 0.216864 | 2_4:+14749381 | None:intergenic |
| CTTGACTTGTTGGCCTTATA+AGG | 0.240588 | 2_4:+14749127 | None:intergenic |
| GAATTATCTATCCTTGTATA+TGG | 0.261392 | 2_4:-14748529 | Msa0317170:three_prime_UTR |
| CATCATAACACCGACAAAAT+AGG | 0.264743 | 2_4:-14748855 | Msa0317170:CDS |
| TCCATGCTTAACACCTTATA+AGG | 0.301400 | 2_4:-14749140 | Msa0317170:CDS |
| GATTTAGATCTTTGAGTAAT+AGG | 0.306235 | 2_4:+14749161 | None:intergenic |
| GGGAAGATGCTTCAAATTCT+TGG | 0.310945 | 2_4:-14749356 | Msa0317170:CDS |
| GTTGTGGTGTTAACTGATTT+TGG | 0.313082 | 2_4:+14751246 | None:intergenic |
| ATTTGAAGAAGGATGCTAAA+AGG | 0.318739 | 2_4:-14751179 | Msa0317170:CDS |
| GTTCATGTTGTTTAACTCAT+AGG | 0.323014 | 2_4:+14751401 | None:intergenic |
| AACCATAATAAACATGGAAT+TGG | 0.337866 | 2_4:-14748773 | Msa0317170:three_prime_UTR |
| TACCCTGGATCTTGACTTGT+TGG | 0.344307 | 2_4:+14749117 | None:intergenic |
| TGTTACGAATTCTCAGCTTC+AGG | 0.362474 | 2_4:-14750063 | Msa0317170:CDS |
| GGACCCCACATTAACCAAAA+TGG | 0.363148 | 2_4:-14751292 | Msa0317170:CDS |
| AAAACAGGCTTCCAAGGTTA+TGG | 0.363275 | 2_4:-14749411 | Msa0317170:CDS |
| AGCTGAGAATTCGTAACATC+TGG | 0.381164 | 2_4:+14750068 | None:intergenic |
| TTTCTTGCAGGATTCTCTGC+TGG | 0.381599 | 2_4:-14748973 | Msa0317170:intron |
| AAGAAGCTGTTTGGGAAAAG+TGG | 0.391876 | 2_4:-14751132 | Msa0317170:CDS |
| ATCGGATCTTCGACTTGCTT+TGG | 0.396908 | 2_4:+14748824 | None:intergenic |
| CGTTGCAGAAGAAGCTGTTT+GGG | 0.404705 | 2_4:-14751140 | Msa0317170:CDS |
| ACGTTGCAGAAGAAGCTGTT+TGG | 0.421127 | 2_4:-14751141 | Msa0317170:CDS |
| GGAAGATGCTTCAAATTCTT+GGG | 0.434882 | 2_4:-14749355 | Msa0317170:intron |
| GCATCTTCCCTGCCATGTGC+TGG | 0.446528 | 2_4:+14749369 | None:intergenic |
| TTTAACTCATAGGATGAAGA+TGG | 0.449077 | 2_4:+14751411 | None:intergenic |
| GAACACCACCAGCACATGGC+AGG | 0.454116 | 2_4:-14749377 | Msa0317170:CDS |
| GGAGCTGAAAGAAGCAAAAC+AGG | 0.459189 | 2_4:-14750018 | Msa0317170:CDS |
| TCCTTCAGATGTTATTGCTA+AGG | 0.460464 | 2_4:-14751202 | Msa0317170:CDS |
| ACAGTTGACAGCCGTCTGAT+TGG | 0.476063 | 2_4:-14748720 | Msa0317170:three_prime_UTR |
| TGAAGGAATAAACAACTTAG+TGG | 0.476224 | 2_4:+14751218 | None:intergenic |
| CAACTTAGTGGTTGTTGTTG+TGG | 0.482407 | 2_4:+14751230 | None:intergenic |
| TTTGAAGAAGGATGCTAAAA+GGG | 0.483411 | 2_4:-14751178 | Msa0317170:CDS |
| AGGCCAACAAGTCAAGATCC+AGG | 0.484409 | 2_4:-14749120 | Msa0317170:CDS |
| CTGTGTTATTTGAGCAACTT+CGG | 0.485151 | 2_4:-14748674 | Msa0317170:three_prime_UTR |
| GCCTCAAAATCTCCTCCTCT+TGG | 0.492630 | 2_4:+14750998 | None:intergenic |
| GCCTTATAAGGTGTTAAGCA+TGG | 0.496148 | 2_4:+14749139 | None:intergenic |
| TGTTGTTGGAGCTACGTTGG+AGG | 0.501276 | 2_4:+14751320 | None:intergenic |
| AACACCACCAGCACATGGCA+GGG | 0.501733 | 2_4:-14749376 | Msa0317170:CDS |
| CGTAGCTCCAACAACAAAAG+TGG | 0.504449 | 2_4:-14751313 | Msa0317170:CDS |
| TTGGAGAACTTCCATAACCT+TGG | 0.505190 | 2_4:+14749400 | None:intergenic |
| TATTGCTAAGGATTTGAAGA+AGG | 0.505246 | 2_4:-14751190 | Msa0317170:CDS |
| GTTGTTGGAGCTACGTTGGA+GGG | 0.517055 | 2_4:+14751321 | None:intergenic |
| CATTCCATCTCTACAACAGC+AGG | 0.518931 | 2_4:-14749994 | Msa0317170:CDS |
| GAAACCTGCTGTTGTAGAGA+TGG | 0.525678 | 2_4:+14749990 | None:intergenic |
| CAGCAGGTTTCTTCTCTCAC+TGG | 0.533966 | 2_4:-14749978 | Msa0317170:CDS |
| AGCCGTCTGATTGGTATCAA+TGG | 0.544786 | 2_4:-14748711 | Msa0317170:three_prime_UTR |
| GAGTTAAAATCATCAAGCTC+AGG | 0.548017 | 2_4:+14748915 | None:intergenic |
| GATTGAGAATAAGAATAAAG+AGG | 0.551856 | 2_4:-14750965 | Msa0317170:intron |
| CTGAAGTGAAGGGGAATACA+AGG | 0.552916 | 2_4:-14751074 | Msa0317170:CDS |
| CCGATGACCGCAAAACAGCT+TGG | 0.555852 | 2_4:-14748806 | Msa0317170:CDS |
| TCTTCCCTGCCATGTGCTGG+TGG | 0.561742 | 2_4:+14749372 | None:intergenic |
| GAAGGCTTTGACTGAAGTGA+AGG | 0.562948 | 2_4:-14751085 | Msa0317170:CDS |
| TCCTTAGCAATAACATCTGA+AGG | 0.563245 | 2_4:+14751201 | None:intergenic |
| GGAGCTTCTGAGCGTGAACA+AGG | 0.574713 | 2_4:-14751022 | Msa0317170:CDS |
| TTATACCTCTGCAAGATCCT+CGG | 0.575006 | 2_4:+14749938 | None:intergenic |
| AAGGATGCTAAAAGGGTCAC+CGG | 0.578297 | 2_4:-14751171 | Msa0317170:CDS |
| AGAAGCTGTTTGGGAAAAGT+GGG | 0.579536 | 2_4:-14751131 | Msa0317170:CDS |
| GGAGGGTTTAGCTTTGACAA+TGG | 0.580722 | 2_4:+14751338 | None:intergenic |
| TTAACTCATAGGATGAAGAT+GGG | 0.589572 | 2_4:+14751412 | None:intergenic |
| GTAGGAACTGTATCTAGAAG+AGG | 0.589655 | 2_4:+14751473 | None:intergenic |
| GAATACAAGGACACTTGCTA+TGG | 0.596634 | 2_4:-14751061 | Msa0317170:CDS |
| TGTTGAAGAACGTGAATCGT+AGG | 0.596776 | 2_4:+14751455 | None:intergenic |
| AAGGCTTTGACTGAAGTGAA+GGG | 0.598958 | 2_4:-14751084 | Msa0317170:CDS |
| GGACACTTGCTATGGTGTTG+AGG | 0.605195 | 2_4:-14751053 | Msa0317170:CDS |
| GCTGAGAATTCGTAACATCT+GGG | 0.609356 | 2_4:+14750069 | None:intergenic |
| GGCCAACAAGTCAAGATCCA+GGG | 0.610888 | 2_4:-14749119 | Msa0317170:intron |
| GAGTTCTGAGAAGAAAGAGA+AGG | 0.612616 | 2_4:-14751109 | Msa0317170:CDS |
| ACTTGTAGAGAAGCAAGGCT+CGG | 0.613469 | 2_4:-14750039 | Msa0317170:CDS |
| CAGGAACTTGTAGAGAAGCA+AGG | 0.613714 | 2_4:-14750044 | Msa0317170:CDS |
| CTATGGTGTTGAGGAGTGAG+AGG | 0.615079 | 2_4:-14751044 | Msa0317170:CDS |
| TAGGAACTGTATCTAGAAGA+GGG | 0.617000 | 2_4:+14751474 | None:intergenic |
| CCAAGAACACCACCAGCACA+TGG | 0.617605 | 2_4:-14749381 | Msa0317170:CDS |
| GCTCATGTGAACCATATACA+AGG | 0.618434 | 2_4:+14748518 | None:intergenic |
| TGAGAAGAAAGAGAAGGTGA+AGG | 0.619946 | 2_4:-14751103 | Msa0317170:CDS |
| ATGACCGCAAAACAGCTTGG+AGG | 0.621082 | 2_4:-14748803 | Msa0317170:CDS |
| CGTGAACAAGGACCAAGAGG+AGG | 0.622245 | 2_4:-14751010 | Msa0317170:CDS |
| AGCCATTGATACCAATCAGA+CGG | 0.627130 | 2_4:+14748709 | None:intergenic |
| GGAAACAAGGAAAAGAGATG+AGG | 0.627965 | 2_4:+14748630 | None:intergenic |
| AGAATGAACCATAATAAACA+TGG | 0.638228 | 2_4:-14748779 | Msa0317170:three_prime_UTR |
| AGGCTTTGACTGAAGTGAAG+GGG | 0.655750 | 2_4:-14751083 | Msa0317170:CDS |
| TTGATTTGAACTGAAGAACG+AGG | 0.661368 | 2_4:+14751576 | None:intergenic |
| CATGCAGGAGTTTAGCTCTG+AGG | 0.662092 | 2_4:-14749197 | Msa0317170:intron |
| TCAGCTTCAAAGCCTTGCCG+AGG | 0.664957 | 2_4:-14749955 | Msa0317170:CDS |
| CCTCTGCAAGATCCTCGGCA+AGG | 0.669376 | 2_4:+14749943 | None:intergenic |
| TCCAACTTCTAAAACAGACA+CGG | 0.674788 | 2_4:+14748585 | None:intergenic |
| GCTGGATGAAAGCTTATCTG+AGG | 0.675802 | 2_4:-14748955 | Msa0317170:CDS |
| GAGCGTGAACAAGGACCAAG+AGG | 0.675920 | 2_4:-14751013 | Msa0317170:CDS |
| CCTTGCCGAGGATCTTGCAG+AGG | 0.682172 | 2_4:-14749943 | Msa0317170:intron |
| AGAGATGAGGAATCTCAACA+AGG | 0.703409 | 2_4:+14748643 | None:intergenic |
| TATGGTGTTGAGGAGTGAGA+GGG | 0.723717 | 2_4:-14751043 | Msa0317170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGAATTTGAAAAATATTT+TGG | - | chr2_4:14750836-14750855 | Msa0317170:intron | 10.0% |
| !! | AAAATTAATCTTAACATGTT+TGG | + | chr2_4:14749584-14749603 | None:intergenic | 15.0% |
| !!! | TGAAATTGATTTTTACAAGT+GGG | + | chr2_4:14749550-14749569 | None:intergenic | 20.0% |
| !!! | TTGAAATTGATTTTTACAAG+TGG | + | chr2_4:14749551-14749570 | None:intergenic | 20.0% |
| !! | AAGTTAAAAATTGAGATACT+GGG | - | chr2_4:14749667-14749686 | Msa0317170:intron | 20.0% |
| !! | GACTAATTTCAATTTGAAAA+AGG | - | chr2_4:14749689-14749708 | Msa0317170:intron | 20.0% |
| !!! | TGTTTTTTCATTTGTTTGAT+AGG | - | chr2_4:14750609-14750628 | Msa0317170:intron | 20.0% |
| !! | GAAAAATGCATAAATTAGTA+AGG | + | chr2_4:14750998-14751017 | None:intergenic | 20.0% |
| !! | CATGAAATTTTTCACCATTT+TGG | + | chr2_4:14748791-14748810 | None:intergenic | 25.0% |
| ! | GATTGAGAATAAGAATAAAG+AGG | - | chr2_4:14749101-14749120 | Msa0317170:intron | 25.0% |
| !! | TTGAATCTGATTTGCAATTA+TGG | - | chr2_4:14749148-14749167 | Msa0317170:CDS | 25.0% |
| !! | TGAATCTGATTTGCAATTAT+GGG | - | chr2_4:14749149-14749168 | Msa0317170:CDS | 25.0% |
| ! | TTTCAATGTTTATGATCTGA+TGG | - | chr2_4:14749220-14749239 | Msa0317170:intron | 25.0% |
| ! | TTCAATGTTTATGATCTGAT+GGG | - | chr2_4:14749221-14749240 | Msa0317170:intron | 25.0% |
| ! | ATTTCTGAGTTAAGACAATT+AGG | + | chr2_4:14749248-14749267 | None:intergenic | 25.0% |
| ! | TAATTGTCTTAACTCAGAAA+TGG | - | chr2_4:14749247-14749266 | Msa0317170:intron | 25.0% |
| !!! | TAGTTTTAGATTTGTGTGTT+TGG | - | chr2_4:14749310-14749329 | Msa0317170:intron | 25.0% |
| !!! | GATTTTAGTTAAAAGTGAGT+TGG | - | chr2_4:14749366-14749385 | Msa0317170:CDS | 25.0% |
| ! | GATACAAAGTGATTTATGTT+TGG | - | chr2_4:14749388-14749407 | Msa0317170:CDS | 25.0% |
| ! | GAAGTTAAAAATTGAGATAC+TGG | - | chr2_4:14749666-14749685 | Msa0317170:intron | 25.0% |
| ! | ATGTGACTTAAGAGTTAATT+TGG | + | chr2_4:14749886-14749905 | None:intergenic | 25.0% |
| ! | AAGAATGAATTCAGAATTAG+TGG | + | chr2_4:14750171-14750190 | None:intergenic | 25.0% |
| ! | TATAAAAGCAAACTTGGATT+TGG | + | chr2_4:14750260-14750279 | None:intergenic | 25.0% |
| ! | ATCAGATATAAAAGCAAACT+TGG | + | chr2_4:14750266-14750285 | None:intergenic | 25.0% |
| ! | GATAAGTATTCAACAAAAAC+AGG | - | chr2_4:14750640-14750659 | Msa0317170:intron | 25.0% |
| ! | GATTTAGATCTTTGAGTAAT+AGG | + | chr2_4:14750908-14750927 | None:intergenic | 25.0% |
| ! | AGAATGAACCATAATAAACA+TGG | - | chr2_4:14751287-14751306 | Msa0317170:CDS | 25.0% |
| ! | AACCATAATAAACATGGAAT+TGG | - | chr2_4:14751293-14751312 | Msa0317170:CDS | 25.0% |
| ! | ATCCAATTCCATGTTTATTA+TGG | + | chr2_4:14751298-14751317 | None:intergenic | 25.0% |
| ! | AAAACTGAAAAATGGAAACA+AGG | + | chr2_4:14751452-14751471 | None:intergenic | 25.0% |
| ! | GAATTATCTATCCTTGTATA+TGG | - | chr2_4:14751537-14751556 | Msa0317170:five_prime_UTR | 25.0% |
| TTAACTCATAGGATGAAGAT+GGG | + | chr2_4:14748657-14748676 | None:intergenic | 30.0% | |
| TTTAACTCATAGGATGAAGA+TGG | + | chr2_4:14748658-14748677 | None:intergenic | 30.0% | |
| ! | GTTCATGTTGTTTAACTCAT+AGG | + | chr2_4:14748668-14748687 | None:intergenic | 30.0% |
| ! | AAGATGATGATGATGATTTG+GGG | + | chr2_4:14748699-14748718 | None:intergenic | 30.0% |
| ! | GAAGATGATGATGATGATTT+GGG | + | chr2_4:14748700-14748719 | None:intergenic | 30.0% |
| ! | TGAAGATGATGATGATGATT+TGG | + | chr2_4:14748701-14748720 | None:intergenic | 30.0% |
| !!! | TTCACCATTTTGGTTAATGT+GGG | + | chr2_4:14748781-14748800 | None:intergenic | 30.0% |
| !!! | TTTCACCATTTTGGTTAATG+TGG | + | chr2_4:14748782-14748801 | None:intergenic | 30.0% |
| TGAAGGAATAAACAACTTAG+TGG | + | chr2_4:14748851-14748870 | None:intergenic | 30.0% | |
| TATTGCTAAGGATTTGAAGA+AGG | - | chr2_4:14748876-14748895 | Msa0317170:CDS | 30.0% | |
| ATTTGAAGAAGGATGCTAAA+AGG | - | chr2_4:14748887-14748906 | Msa0317170:CDS | 30.0% | |
| TTTGAAGAAGGATGCTAAAA+GGG | - | chr2_4:14748888-14748907 | Msa0317170:CDS | 30.0% | |
| ATTTGTGCATAAGTCAAGTT+TGG | - | chr2_4:14749490-14749509 | Msa0317170:intron | 30.0% | |
| !!! | CTCAATTTTTAACTTCTCCA+TGG | + | chr2_4:14749662-14749681 | None:intergenic | 30.0% |
| ATATTGATACAAGTTTAGCC+AGG | - | chr2_4:14749728-14749747 | Msa0317170:intron | 30.0% | |
| TATTGATACAAGTTTAGCCA+GGG | - | chr2_4:14749729-14749748 | Msa0317170:intron | 30.0% | |
| !! | TGTTATTTCTTTGTTCCTGA+AGG | - | chr2_4:14749845-14749864 | Msa0317170:intron | 30.0% |
| !! | GTTATTTCTTTGTTCCTGAA+GGG | - | chr2_4:14749846-14749865 | Msa0317170:intron | 30.0% |
| ! | ATTTGCTTTGGTGAATTTTC+AGG | - | chr2_4:14749904-14749923 | Msa0317170:intron | 30.0% |
| ATGACTTGATTTCTTCTCTT+TGG | + | chr2_4:14749958-14749977 | None:intergenic | 30.0% | |
| ACAACGAATTTGCATATGTT+TGG | - | chr2_4:14750322-14750341 | Msa0317170:intron | 30.0% | |
| TTTGCATATGTTTGGAAACA+CGG | - | chr2_4:14750330-14750349 | Msa0317170:intron | 30.0% | |
| AACAAAGGTTTCAATACTCT+AGG | + | chr2_4:14750562-14750581 | None:intergenic | 30.0% | |
| AACAATATCAGATTTCTCTG+TGG | + | chr2_4:14750593-14750612 | None:intergenic | 30.0% | |
| TTCATTTGTTTGATAGGTCA+AGG | - | chr2_4:14750615-14750634 | Msa0317170:intron | 30.0% | |
| ! | TTTGGTTTACTAATTCATGC+AGG | - | chr2_4:14750854-14750873 | Msa0317170:intron | 30.0% |
| TAATAGTTTCCATTTCTTGC+AGG | - | chr2_4:14751081-14751100 | Msa0317170:CDS | 30.0% | |
| ATGCTAGCAAAACTGAAAAA+TGG | + | chr2_4:14751460-14751479 | None:intergenic | 30.0% | |
| TAGGAACTGTATCTAGAAGA+GGG | + | chr2_4:14748595-14748614 | None:intergenic | 35.0% | |
| ! | ATGATGATTTGGGGTGTTTA+AGG | + | chr2_4:14748690-14748709 | None:intergenic | 35.0% |
| !!! | TCACCATTTTGGTTAATGTG+GGG | + | chr2_4:14748780-14748799 | None:intergenic | 35.0% |
| !! | GTTGTGGTGTTAACTGATTT+TGG | + | chr2_4:14748823-14748842 | None:intergenic | 35.0% |
| TCCTTCAGATGTTATTGCTA+AGG | - | chr2_4:14748864-14748883 | Msa0317170:CDS | 35.0% | |
| TCCTTAGCAATAACATCTGA+AGG | + | chr2_4:14748868-14748887 | None:intergenic | 35.0% | |
| !! | TTAGCATGTGATTGGTTTCA+TGG | + | chr2_4:14749635-14749654 | None:intergenic | 35.0% |
| ATGGATACTTAGCATGTGAT+TGG | + | chr2_4:14749643-14749662 | None:intergenic | 35.0% | |
| AATCACATGCTAAGTATCCA+TGG | - | chr2_4:14749642-14749661 | Msa0317170:intron | 35.0% | |
| CAAATTGTTCAAATGTTCCC+TGG | + | chr2_4:14749749-14749768 | None:intergenic | 35.0% | |
| CTCTTAAGTCACATTTGCTT+TGG | - | chr2_4:14749892-14749911 | Msa0317170:intron | 35.0% | |
| !!! | TTTTCAGGTAGAGAAGTTGA+AGG | - | chr2_4:14749919-14749938 | Msa0317170:intron | 35.0% |
| TCAGAATTAGTGGAATTGCT+AGG | + | chr2_4:14750161-14750180 | None:intergenic | 35.0% | |
| TGTTAGCTGTTCGAAGTTAT+AGG | - | chr2_4:14750217-14750236 | Msa0317170:intron | 35.0% | |
| CGAAGTTATAGGCTTAAGAT+TGG | - | chr2_4:14750228-14750247 | Msa0317170:intron | 35.0% | |
| TCTGTGGAAGCTAAAAACAA+AGG | + | chr2_4:14750577-14750596 | None:intergenic | 35.0% | |
| GGAAGATGCTTCAAATTCTT+GGG | - | chr2_4:14750711-14750730 | Msa0317170:intron | 35.0% | |
| TCCATGCTTAACACCTTATA+AGG | - | chr2_4:14750926-14750945 | Msa0317170:intron | 35.0% | |
| ! | ATGAATTTAGTTCGTTACCC+TGG | + | chr2_4:14750967-14750986 | None:intergenic | 35.0% |
| GAGTTAAAATCATCAAGCTC+AGG | + | chr2_4:14751154-14751173 | None:intergenic | 35.0% | |
| !!! | CTATTTTGTCGGTGTTATGA+TGG | + | chr2_4:14751213-14751232 | None:intergenic | 35.0% |
| CATCATAACACCGACAAAAT+AGG | - | chr2_4:14751211-14751230 | Msa0317170:CDS | 35.0% | |
| ! | GGTAGTGATTCCTATTTTGT+CGG | + | chr2_4:14751224-14751243 | None:intergenic | 35.0% |
| !! | CTGTGTTATTTGAGCAACTT+CGG | - | chr2_4:14751392-14751411 | Msa0317170:CDS | 35.0% |
| !! | TCCAACTTCTAAAACAGACA+CGG | + | chr2_4:14751484-14751503 | None:intergenic | 35.0% |
| GTAGGAACTGTATCTAGAAG+AGG | + | chr2_4:14748596-14748615 | None:intergenic | 40.0% | |
| TGTTGAAGAACGTGAATCGT+AGG | + | chr2_4:14748614-14748633 | None:intergenic | 40.0% | |
| !!! | TTTTGTTGTTGGAGCTACGT+TGG | + | chr2_4:14748752-14748771 | None:intergenic | 40.0% |
| ! | CAACTTAGTGGTTGTTGTTG+TGG | + | chr2_4:14748839-14748858 | None:intergenic | 40.0% |
| AAGAAGCTGTTTGGGAAAAG+TGG | - | chr2_4:14748934-14748953 | Msa0317170:CDS | 40.0% | |
| AGAAGCTGTTTGGGAAAAGT+GGG | - | chr2_4:14748935-14748954 | Msa0317170:CDS | 40.0% | |
| !! | GAGTTCTGAGAAGAAAGAGA+AGG | - | chr2_4:14748957-14748976 | Msa0317170:CDS | 40.0% |
| TGAGAAGAAAGAGAAGGTGA+AGG | - | chr2_4:14748963-14748982 | Msa0317170:CDS | 40.0% | |
| ! | AAGGCTTTGACTGAAGTGAA+GGG | - | chr2_4:14748982-14749001 | Msa0317170:intron | 40.0% |
| ! | GAATACAAGGACACTTGCTA+TGG | - | chr2_4:14749005-14749024 | Msa0317170:intron | 40.0% |
| ACAGTTTCATGAAACCCTTC+AGG | + | chr2_4:14749863-14749882 | None:intergenic | 40.0% | |
| GCTGAGAATTCGTAACATCT+GGG | + | chr2_4:14750000-14750019 | None:intergenic | 40.0% | |
| AGCTGAGAATTCGTAACATC+TGG | + | chr2_4:14750001-14750020 | None:intergenic | 40.0% | |
| TGTTACGAATTCTCAGCTTC+AGG | - | chr2_4:14750003-14750022 | Msa0317170:CDS | 40.0% | |
| TTATACCTCTGCAAGATCCT+CGG | + | chr2_4:14750131-14750150 | None:intergenic | 40.0% | |
| TAGTGGAATTGCTAGGATGT+AGG | + | chr2_4:14750154-14750173 | None:intergenic | 40.0% | |
| !! | CTTTGAGTTGACCATGTGTT+AGG | + | chr2_4:14750364-14750383 | None:intergenic | 40.0% |
| CAACTCAAAGCTAGTAGTTG+TGG | - | chr2_4:14750374-14750393 | Msa0317170:intron | 40.0% | |
| TTTGGAAACTTCAACTTCCC+CGG | + | chr2_4:14750423-14750442 | None:intergenic | 40.0% | |
| TCAACAAAAACAGGCTTCCA+AGG | - | chr2_4:14750649-14750668 | Msa0317170:intron | 40.0% | |
| AAAACAGGCTTCCAAGGTTA+TGG | - | chr2_4:14750655-14750674 | Msa0317170:intron | 40.0% | |
| TTGGAGAACTTCCATAACCT+TGG | + | chr2_4:14750669-14750688 | None:intergenic | 40.0% | |
| GGGAAGATGCTTCAAATTCT+TGG | - | chr2_4:14750710-14750729 | Msa0317170:intron | 40.0% | |
| ! | GCCTTATAAGGTGTTAAGCA+TGG | + | chr2_4:14750930-14750949 | None:intergenic | 40.0% |
| !! | CTTGACTTGTTGGCCTTATA+AGG | + | chr2_4:14750942-14750961 | None:intergenic | 40.0% |
| AGCCATTGATACCAATCAGA+CGG | + | chr2_4:14751360-14751379 | None:intergenic | 40.0% | |
| AGAGATGAGGAATCTCAACA+AGG | + | chr2_4:14751426-14751445 | None:intergenic | 40.0% | |
| GGAAACAAGGAAAAGAGATG+AGG | + | chr2_4:14751439-14751458 | None:intergenic | 40.0% | |
| !!! | ACCGTGTCTGTTTTAGAAGT+TGG | - | chr2_4:14751480-14751499 | Msa0317170:CDS | 40.0% |
| GCTCATGTGAACCATATACA+AGG | + | chr2_4:14751551-14751570 | None:intergenic | 40.0% | |
| TCTCTCTCTCTCTCTGCAAA+TGG | - | chr2_4:14748549-14748568 | Msa0317170:three_prime_UTR | 45.0% | |
| !! | GGAGGGTTTAGCTTTGACAA+TGG | + | chr2_4:14748731-14748750 | None:intergenic | 45.0% |
| CGTAGCTCCAACAACAAAAG+TGG | - | chr2_4:14748753-14748772 | Msa0317170:three_prime_UTR | 45.0% | |
| GGACCCCACATTAACCAAAA+TGG | - | chr2_4:14748774-14748793 | Msa0317170:three_prime_UTR | 45.0% | |
| AAGGATGCTAAAAGGGTCAC+CGG | - | chr2_4:14748895-14748914 | Msa0317170:CDS | 45.0% | |
| CTTCTGCAACGTCGAAAAAC+CGG | + | chr2_4:14748917-14748936 | None:intergenic | 45.0% | |
| ACGTTGCAGAAGAAGCTGTT+TGG | - | chr2_4:14748925-14748944 | Msa0317170:CDS | 45.0% | |
| CGTTGCAGAAGAAGCTGTTT+GGG | - | chr2_4:14748926-14748945 | Msa0317170:CDS | 45.0% | |
| ! | GAAGGCTTTGACTGAAGTGA+AGG | - | chr2_4:14748981-14749000 | Msa0317170:intron | 45.0% |
| ! | AGGCTTTGACTGAAGTGAAG+GGG | - | chr2_4:14748983-14749002 | Msa0317170:intron | 45.0% |
| CTGAAGTGAAGGGGAATACA+AGG | - | chr2_4:14748992-14749011 | Msa0317170:intron | 45.0% | |
| ! | TATGGTGTTGAGGAGTGAGA+GGG | - | chr2_4:14749023-14749042 | Msa0317170:intron | 45.0% |
| ! | ACCAAGAGGAGGAGATTTTG+AGG | - | chr2_4:14749067-14749086 | Msa0317170:intron | 45.0% |
| ! | AGTGGGAGTTCTAACAAGCT+AGG | + | chr2_4:14749533-14749552 | None:intergenic | 45.0% |
| CAGGAACTTGTAGAGAAGCA+AGG | - | chr2_4:14750022-14750041 | Msa0317170:CDS | 45.0% | |
| ACTTGTAGAGAAGCAAGGCT+CGG | - | chr2_4:14750027-14750046 | Msa0317170:CDS | 45.0% | |
| GGAGCTGAAAGAAGCAAAAC+AGG | - | chr2_4:14750048-14750067 | Msa0317170:CDS | 45.0% | |
| CATTCCATCTCTACAACAGC+AGG | - | chr2_4:14750072-14750091 | Msa0317170:CDS | 45.0% | |
| GAAACCTGCTGTTGTAGAGA+TGG | + | chr2_4:14750079-14750098 | None:intergenic | 45.0% | |
| AGCGGCTTGAATAGTGTGTT+TGG | + | chr2_4:14750441-14750460 | None:intergenic | 45.0% | |
| !! | TACCCTGGATCTTGACTTGT+TGG | + | chr2_4:14750952-14750971 | None:intergenic | 45.0% |
| GCAGAGAATCCTGCAAGAAA+TGG | + | chr2_4:14751093-14751112 | None:intergenic | 45.0% | |
| TTTCTTGCAGGATTCTCTGC+TGG | - | chr2_4:14751093-14751112 | Msa0317170:CDS | 45.0% | |
| GCTGGATGAAAGCTTATCTG+AGG | - | chr2_4:14751111-14751130 | Msa0317170:CDS | 45.0% | |
| ! | ATCGGATCTTCGACTTGCTT+TGG | + | chr2_4:14751245-14751264 | None:intergenic | 45.0% |
| !! | TCTACCTCCAAGCTGTTTTG+CGG | + | chr2_4:14751270-14751289 | None:intergenic | 45.0% |
| AGCCGTCTGATTGGTATCAA+TGG | - | chr2_4:14751355-14751374 | Msa0317170:CDS | 45.0% | |
| GTTGTTGGAGCTACGTTGGA+GGG | + | chr2_4:14748748-14748767 | None:intergenic | 50.0% | |
| TGTTGTTGGAGCTACGTTGG+AGG | + | chr2_4:14748749-14748768 | None:intergenic | 50.0% | |
| !! | GTGGGGTCCACTTTTGTTGT+TGG | + | chr2_4:14748763-14748782 | None:intergenic | 50.0% |
| !! | GGACACTTGCTATGGTGTTG+AGG | - | chr2_4:14749013-14749032 | Msa0317170:intron | 50.0% |
| ! | CTATGGTGTTGAGGAGTGAG+AGG | - | chr2_4:14749022-14749041 | Msa0317170:intron | 50.0% |
| GCCTCAAAATCTCCTCCTCT+TGG | + | chr2_4:14749071-14749090 | None:intergenic | 50.0% | |
| CAGCAGGTTTCTTCTCTCAC+TGG | - | chr2_4:14750088-14750107 | Msa0317170:CDS | 50.0% | |
| CGAACAGCTAACACTGTGCA+TGG | + | chr2_4:14750210-14750229 | None:intergenic | 50.0% | |
| AGCACAAAGTGAGCTGACAC+CGG | - | chr2_4:14750401-14750420 | Msa0317170:intron | 50.0% | |
| CCACGCATTCAAACACTCAG+CGG | + | chr2_4:14750459-14750478 | None:intergenic | 50.0% | |
| !! | CATGCAGGAGTTTAGCTCTG+AGG | - | chr2_4:14750869-14750888 | Msa0317170:intron | 50.0% |
| AGGCCAACAAGTCAAGATCC+AGG | - | chr2_4:14750946-14750965 | Msa0317170:intron | 50.0% | |
| GGCCAACAAGTCAAGATCCA+GGG | - | chr2_4:14750947-14750966 | Msa0317170:intron | 50.0% | |
| !! | CCAAGCTGTTTTGCGGTCAT+CGG | + | chr2_4:14751263-14751282 | None:intergenic | 50.0% |
| ATGACCGCAAAACAGCTTGG+AGG | - | chr2_4:14751263-14751282 | Msa0317170:CDS | 50.0% | |
| ACAGTTGACAGCCGTCTGAT+TGG | - | chr2_4:14751346-14751365 | Msa0317170:CDS | 50.0% | |
| GGAGCTTCTGAGCGTGAACA+AGG | - | chr2_4:14749044-14749063 | Msa0317170:intron | 55.0% | |
| GAGCGTGAACAAGGACCAAG+AGG | - | chr2_4:14749053-14749072 | Msa0317170:intron | 55.0% | |
| CGTGAACAAGGACCAAGAGG+AGG | - | chr2_4:14749056-14749075 | Msa0317170:intron | 55.0% | |
| TCAGCTTCAAAGCCTTGCCG+AGG | - | chr2_4:14750111-14750130 | Msa0317170:CDS | 55.0% | |
| CGGTGCATGCACCTAACACA+TGG | - | chr2_4:14750350-14750369 | Msa0317170:intron | 55.0% | |
| GCACAAAGTGAGCTGACACC+GGG | - | chr2_4:14750402-14750421 | Msa0317170:intron | 55.0% | |
| CACAAAGTGAGCTGACACCG+GGG | - | chr2_4:14750403-14750422 | Msa0317170:intron | 55.0% | |
| CCGCTGAGTGTTTGAATGCG+TGG | - | chr2_4:14750456-14750475 | Msa0317170:intron | 55.0% | |
| ! | CCATGTGCTGGTGGTGTTCT+TGG | + | chr2_4:14750688-14750707 | None:intergenic | 55.0% |
| CCAAGAACACCACCAGCACA+TGG | - | chr2_4:14750685-14750704 | Msa0317170:intron | 55.0% | |
| AACACCACCAGCACATGGCA+GGG | - | chr2_4:14750690-14750709 | Msa0317170:intron | 55.0% | |
| CAGCCACTTGCGCTAGATCA+CGG | + | chr2_4:14750772-14750791 | None:intergenic | 55.0% | |
| CCGATGACCGCAAAACAGCT+TGG | - | chr2_4:14751260-14751279 | Msa0317170:CDS | 55.0% | |
| CCTCTGCAAGATCCTCGGCA+AGG | + | chr2_4:14750126-14750145 | None:intergenic | 60.0% | |
| CCTTGCCGAGGATCTTGCAG+AGG | - | chr2_4:14750123-14750142 | Msa0317170:CDS | 60.0% | |
| GAACACCACCAGCACATGGC+AGG | - | chr2_4:14750689-14750708 | Msa0317170:intron | 60.0% | |
| TCTTCCCTGCCATGTGCTGG+TGG | + | chr2_4:14750697-14750716 | None:intergenic | 60.0% | |
| GCATCTTCCCTGCCATGTGC+TGG | + | chr2_4:14750700-14750719 | None:intergenic | 60.0% | |
| CCACTTGCGCTAGATCACGG+TGG | + | chr2_4:14750769-14750788 | None:intergenic | 60.0% | |
| CCACCGTGATCTAGCGCAAG+TGG | - | chr2_4:14750766-14750785 | Msa0317170:intron | 60.0% | |
| CGTGATCTAGCGCAAGTGGC+TGG | - | chr2_4:14750770-14750789 | Msa0317170:intron | 60.0% | |
| GCGCAAGTGGCTGGTGCACA+TGG | - | chr2_4:14750779-14750798 | Msa0317170:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 14748491 | 14751597 | 14748491 | ID=Msa0317170;Name=Msa0317170 |
| chr2_4 | mRNA | 14748491 | 14751597 | 14748491 | ID=Msa0317170-mRNA-1;Parent=Msa0317170;Name=Msa0317170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=77|1|1|1|1|1|5|309|384 |
| chr2_4 | exon | 14748491 | 14748985 | 14748491 | ID=Msa0317170-mRNA-1:exon:5552;Parent=Msa0317170-mRNA-1 |
| chr2_4 | exon | 14749120 | 14749212 | 14749120 | ID=Msa0317170-mRNA-1:exon:5551;Parent=Msa0317170-mRNA-1 |
| chr2_4 | exon | 14749356 | 14749457 | 14749356 | ID=Msa0317170-mRNA-1:exon:5550;Parent=Msa0317170-mRNA-1 |
| chr2_4 | exon | 14749944 | 14750162 | 14749944 | ID=Msa0317170-mRNA-1:exon:5549;Parent=Msa0317170-mRNA-1 |
| chr2_4 | exon | 14750966 | 14751597 | 14750966 | ID=Msa0317170-mRNA-1:exon:5548;Parent=Msa0317170-mRNA-1 |
| chr2_4 | five_prime_UTR | 14751521 | 14751597 | 14751521 | ID=Msa0317170-mRNA-1:five_prime_utr;Parent=Msa0317170-mRNA-1 |
| chr2_4 | CDS | 14750966 | 14751520 | 14750966 | ID=Msa0317170-mRNA-1:cds;Parent=Msa0317170-mRNA-1 |
| chr2_4 | CDS | 14749944 | 14750162 | 14749944 | ID=Msa0317170-mRNA-1:cds;Parent=Msa0317170-mRNA-1 |
| chr2_4 | CDS | 14749356 | 14749457 | 14749356 | ID=Msa0317170-mRNA-1:cds;Parent=Msa0317170-mRNA-1 |
| chr2_4 | CDS | 14749120 | 14749212 | 14749120 | ID=Msa0317170-mRNA-1:cds;Parent=Msa0317170-mRNA-1 |
| chr2_4 | CDS | 14748800 | 14748985 | 14748800 | ID=Msa0317170-mRNA-1:cds;Parent=Msa0317170-mRNA-1 |
| chr2_4 | three_prime_UTR | 14748491 | 14748799 | 14748491 | ID=Msa0317170-mRNA-1:three_prime_utr;Parent=Msa0317170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
