Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391280 | XP_004502969.2 | 52.459 | 122 | 41 | 3 | 35 | 139 | 24 | 145 | 3.35e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391280 | sp|O65154|KIWI_ARATH | 44.828 | 87 | 40 | 1 | 59 | 137 | 19 | 105 | 4.34e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391280 | A0A1S2YCU2 | 52.459 | 122 | 41 | 3 | 35 | 139 | 24 | 145 | 1.60e-29 | 114 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1362670 | Msa1391280 | 0.867981 | 9.161425e-66 | -8.615850e-47 |
| Msa0657970 | Msa1391280 | 0.800174 | 1.631222e-48 | -8.615850e-47 |
| Msa1307030 | Msa1391280 | 0.876771 | 1.071176e-68 | -8.615850e-47 |
| Msa1075650 | Msa1391280 | 0.806358 | 8.552421e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391280 | MtrunA17_Chr3g0130571 | 50.000 | 106 | 40 | 2 | 47 | 139 | 36 | 141 | 1.77e-26 | 96.7 |
| Msa1391280 | MtrunA17_Chr8g0388461 | 38.961 | 77 | 44 | 1 | 63 | 136 | 87 | 163 | 5.56e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391280 | AT5G09250.1 | 44.828 | 87 | 40 | 1 | 59 | 137 | 19 | 105 | 4.41e-20 | 79.7 |
| Msa1391280 | AT5G09250.4 | 45.833 | 72 | 31 | 1 | 59 | 122 | 19 | 90 | 2.72e-16 | 70.5 |
| Msa1391280 | AT5G09250.3 | 46.269 | 67 | 36 | 0 | 73 | 139 | 44 | 110 | 6.95e-15 | 66.2 |
| Msa1391280 | AT5G09250.2 | 46.970 | 66 | 27 | 1 | 59 | 116 | 19 | 84 | 3.01e-14 | 63.9 |
| Msa1391280 | AT5G09250.5 | 46.970 | 66 | 27 | 1 | 59 | 116 | 19 | 84 | 3.01e-14 | 63.9 |
| Msa1391280 | AT5G09240.1 | 38.372 | 86 | 46 | 2 | 59 | 137 | 21 | 106 | 1.44e-12 | 60.5 |
Find 33 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTCAATGAGGACTCTT+AGG | 0.366094 | tig0021418:-33959 | None:intergenic |
| CGCGAATATTACTTAAAAGA+TGG | 0.404513 | tig0021418:-36600 | Msa1391280:CDS |
| AGCATTGGAACGAAGGGATT+CGG | 0.424874 | tig0021418:-36632 | Msa1391280:CDS |
| AATAGGTCTGGAACTGAAAA+GGG | 0.449012 | tig0021418:-36842 | Msa1391280:CDS |
| GAAGAGGTCTGCAACTGAAA+AGG | 0.458649 | tig0021418:-36870 | Msa1391280:CDS |
| GAAGAGGTCTGCAACTGAAA+AGG | 0.458649 | tig0021418:-36924 | Msa1391280:CDS |
| CAACTGAAAAGGAGAAGAAT+AGG | 0.461723 | tig0021418:-36859 | Msa1391280:CDS |
| CAACTGAAAAGGAGAAGAAT+AGG | 0.461723 | tig0021418:-36913 | Msa1391280:CDS |
| GAATAGGTCTGGAACTGAAA+AGG | 0.466779 | tig0021418:-36843 | Msa1391280:CDS |
| GAACTGAAAAGGAGAAGAAT+AGG | 0.468877 | tig0021418:-36967 | Msa1391280:CDS |
| AGAAATGCCTGGAACTGAAA+AGG | 0.469309 | tig0021418:-36978 | None:intergenic |
| GAATAGGTCTGGAACTGAAA+AGG | 0.472159 | tig0021418:-36897 | Msa1391280:CDS |
| GAATAGGTCTGGAACTGAAA+AGG | 0.472159 | tig0021418:-36951 | Msa1391280:CDS |
| GAAAAGGAGAAGAATAGGTC+TGG | 0.477457 | tig0021418:-36854 | Msa1391280:CDS |
| GAAAAGGAGAAGAATAGGTC+TGG | 0.477457 | tig0021418:-36908 | Msa1391280:CDS |
| GAAAAGGAGAAGAATAGGTC+TGG | 0.477457 | tig0021418:-36962 | Msa1391280:CDS |
| GGAAGGTTTCTGTGAAGCAT+TGG | 0.486433 | tig0021418:-36647 | Msa1391280:CDS |
| AATCTTTATAGAGAAATGCC+TGG | 0.524021 | tig0021418:-36989 | None:intergenic |
| CTGTGAAGCATTGGAACGAA+GGG | 0.525495 | tig0021418:-36638 | Msa1391280:CDS |
| GACCATGTCGGAGTTGATGA+TGG | 0.532598 | tig0021418:-34010 | Msa1391280:CDS |
| GAACTGAAAAGGAGAAGAAG+AGG | 0.574608 | tig0021418:-36886 | Msa1391280:CDS |
| GAACTGAAAAGGAGAAGAAG+AGG | 0.574608 | tig0021418:-36940 | Msa1391280:CDS |
| CGACGAAATCGTCGTATGTG+AGG | 0.579073 | tig0021418:-36765 | Msa1391280:intron |
| GAACTGAAAAGGGGAAGAAG+AGG | 0.586147 | tig0021418:-36832 | Msa1391280:CDS |
| TCTGTGAAGCATTGGAACGA+AGG | 0.589293 | tig0021418:-36639 | Msa1391280:CDS |
| CAACTCCGACATGGTCAATG+AGG | 0.600146 | tig0021418:+34017 | None:intergenic |
| ATGATGGTTCGTAATCACAT+TGG | 0.601069 | tig0021418:-33994 | Msa1391280:CDS |
| GCAGCTTGGGACAAAGAGGA+AGG | 0.602778 | tig0021418:-36664 | Msa1391280:intron |
| TAACGCAGCTTGGGACAAAG+AGG | 0.608874 | tig0021418:-36668 | Msa1391280:intron |
| AATTGACAATGCACTCAATG+AGG | 0.616344 | tig0021418:-33968 | Msa1391280:CDS |
| AACCATCATCAACTCCGACA+TGG | 0.642168 | tig0021418:+34008 | None:intergenic |
| AGGAACCTCATTGACCATGT+CGG | 0.644511 | tig0021418:-34022 | Msa1391280:CDS |
| ATAGGTCTGGAACTGAAAAG+GGG | 0.667488 | tig0021418:-36841 | Msa1391280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATAATACAACTAA+AGG | - | tig0021418:35447-35466 | Msa1391280:intron | 10.0% |
| !!! | TTTTTAATAATACAACTAAA+GGG | - | tig0021418:35448-35467 | Msa1391280:intron | 10.0% |
| !! | TTTATGAAATGTTGTTATAA+TGG | - | tig0021418:34402-34421 | Msa1391280:intron | 15.0% |
| !! | TTATGAAATGTTGTTATAAT+GGG | - | tig0021418:34403-34422 | Msa1391280:intron | 15.0% |
| !! | AATCACTTTATATAAAGATA+AGG | + | tig0021418:34435-34454 | None:intergenic | 15.0% |
| !! | AAATTTCCATAAAATTGAAT+TGG | + | tig0021418:34528-34547 | None:intergenic | 15.0% |
| !!! | ATTCAATTTTATGGAAATTT+TGG | - | tig0021418:34528-34547 | Msa1391280:intron | 15.0% |
| !!! | TTTTAATAATACAACTAAAG+GGG | - | tig0021418:35449-35468 | Msa1391280:intron | 15.0% |
| !! | AGTAATTGTAATCTTAATTT+CGG | + | tig0021418:36000-36019 | None:intergenic | 15.0% |
| !! | TTTAAAGAAAATAATGATGT+TGG | + | tig0021418:36130-36149 | None:intergenic | 15.0% |
| !!! | ATTTATTAAGTTTTTGTTCT+TGG | - | tig0021418:36768-36787 | Msa1391280:CDS | 15.0% |
| !!! | ATGAATTGAAATACCTTTTT+TGG | + | tig0021418:34374-34393 | None:intergenic | 20.0% |
| !! | CAAAATTGATAAACAAAATC+AGG | + | tig0021418:34495-34514 | None:intergenic | 20.0% |
| !!! | GACAAAGGTTTTTTAAAAAA+AGG | - | tig0021418:34602-34621 | Msa1391280:intron | 20.0% |
| !!! | AAATGTGAGATTTGTTAATT+TGG | + | tig0021418:34924-34943 | None:intergenic | 20.0% |
| !!! | TGGTTTCTAGTTATTTTTTT+CGG | + | tig0021418:34958-34977 | None:intergenic | 20.0% |
| !!! | TGAATGTTGGATTTTTATTT+GGG | + | tig0021418:35030-35049 | None:intergenic | 20.0% |
| !!! | TTGAATGTTGGATTTTTATT+TGG | + | tig0021418:35031-35050 | None:intergenic | 20.0% |
| !!! | TTATATGTAGAATTGCATTT+TGG | - | tig0021418:35207-35226 | Msa1391280:intron | 20.0% |
| !!! | TATATGTAGAATTGCATTTT+GGG | - | tig0021418:35208-35227 | Msa1391280:intron | 20.0% |
| !!! | TTTAGAATGAATCAATGAAA+CGG | + | tig0021418:36323-36342 | None:intergenic | 20.0% |
| !!! | ATTGAAATACCTTTTTTGGT+AGG | + | tig0021418:34370-34389 | None:intergenic | 25.0% |
| ! | GTGATTGATGAAATGTTTAA+TGG | - | tig0021418:34449-34468 | Msa1391280:intron | 25.0% |
| ! | ATGTTTAATGGAATAGCAAA+TGG | - | tig0021418:34461-34480 | Msa1391280:intron | 25.0% |
| !! | TTGTCACCAATTCAATTTTA+TGG | - | tig0021418:34519-34538 | Msa1391280:intron | 25.0% |
| ! | CTGTTATGGTACATTATTAT+GGG | + | tig0021418:34851-34870 | None:intergenic | 25.0% |
| ! | TCTGTTATGGTACATTATTA+TGG | + | tig0021418:34852-34871 | None:intergenic | 25.0% |
| !! | ATTTGTTAATTTGGTAGGAA+AGG | + | tig0021418:34915-34934 | None:intergenic | 25.0% |
| !!! | TTAAAGTGCTTGTTGTTATT+TGG | + | tig0021418:34978-34997 | None:intergenic | 25.0% |
| ! | AAATAACAACAAGCACTTTA+AGG | - | tig0021418:34977-34996 | Msa1391280:intron | 25.0% |
| !!! | GAATGTTGGATTTTTATTTG+GGG | + | tig0021418:35029-35048 | None:intergenic | 25.0% |
| !! | GACAGTGAAATTTGTTTATA+TGG | - | tig0021418:35052-35071 | Msa1391280:intron | 25.0% |
| !! | CTTAGTAATATCTAGAACTT+TGG | - | tig0021418:35076-35095 | Msa1391280:intron | 25.0% |
| !! | ATATGTAGAATTGCATTTTG+GGG | - | tig0021418:35209-35228 | Msa1391280:intron | 25.0% |
| ! | AGGAAGTGAAAGTTATTTAT+TGG | - | tig0021418:35487-35506 | Msa1391280:intron | 25.0% |
| ! | TTACAATTACTTCCTTATCA+TGG | - | tig0021418:36009-36028 | Msa1391280:intron | 25.0% |
| ! | AAAGAAAATAATGATGTTGG+TGG | + | tig0021418:36127-36146 | None:intergenic | 25.0% |
| !! | GATTCATTCTAAAAGAGATA+AGG | - | tig0021418:36330-36349 | Msa1391280:intron | 25.0% |
| !! | ACAATTAAGGATTGGTAATA+AGG | + | tig0021418:36532-36551 | None:intergenic | 25.0% |
| !!! | TTTTGACCCAATTTACTTTT+AGG | - | tig0021418:36610-36629 | Msa1391280:CDS | 25.0% |
| ! | ACATTTGTATACTTTCTTTC+AGG | - | tig0021418:36892-36911 | Msa1391280:CDS | 25.0% |
| CGCGAATATTACTTAAAAGA+TGG | - | tig0021418:34334-34353 | Msa1391280:intron | 30.0% | |
| TGATGAAATTCAAAAGCCTA+AGG | - | tig0021418:34577-34596 | Msa1391280:intron | 30.0% | |
| TCGTATATTACAATCTTCCA+CGG | + | tig0021418:34728-34747 | None:intergenic | 30.0% | |
| ATAGAGAAAGGAGATGTATA+AGG | + | tig0021418:34794-34813 | None:intergenic | 30.0% | |
| !! | GTGAGATTTGTTAATTTGGT+AGG | + | tig0021418:34920-34939 | None:intergenic | 30.0% |
| ATTTCACTGTCATTGAATGT+TGG | + | tig0021418:35043-35062 | None:intergenic | 30.0% | |
| AATGCAATTCTTAGAATCCT+TGG | + | tig0021418:35170-35189 | None:intergenic | 30.0% | |
| ATTTGTGTTTACTAGCCAAA+TGG | - | tig0021418:35253-35272 | Msa1391280:intron | 30.0% | |
| ! | GTTGGTGGAGAAATATAATA+CGG | - | tig0021418:35321-35340 | Msa1391280:intron | 30.0% |
| TGAAAGTTATTTATTGGCGA+TGG | - | tig0021418:35493-35512 | Msa1391280:intron | 30.0% | |
| !! | TATTTATTGGCGATGGATTT+TGG | - | tig0021418:35500-35519 | Msa1391280:intron | 30.0% |
| !! | ATTTATTGGCGATGGATTTT+GGG | - | tig0021418:35501-35520 | Msa1391280:intron | 30.0% |
| !!! | AATTGTTTTTGGACTACTTG+CGG | - | tig0021418:35623-35642 | Msa1391280:intron | 30.0% |
| !! | TTTGAGATCTTGGTTGTTTT+TGG | - | tig0021418:36231-36250 | Msa1391280:intron | 30.0% |
| !!! | TTGAGATCTTGGTTGTTTTT+GGG | - | tig0021418:36232-36251 | Msa1391280:intron | 30.0% |
| TTTGAGTAATTGTGATTGAG+AGG | - | tig0021418:36265-36284 | Msa1391280:intron | 30.0% | |
| TAATTGTGATTGAGAGGAAA+AGG | - | tig0021418:36271-36290 | Msa1391280:intron | 30.0% | |
| ! | CAATTTTCAAACCTCTCAAA+TGG | + | tig0021418:36357-36376 | None:intergenic | 30.0% |
| !! | CATCACAACTTCTAAGATAA+TGG | + | tig0021418:36382-36401 | None:intergenic | 30.0% |
| CATTATCTTAGAAGTTGTGA+TGG | - | tig0021418:36380-36399 | Msa1391280:intron | 30.0% | |
| ATACAGAGACAATTAAGGAT+TGG | + | tig0021418:36540-36559 | None:intergenic | 30.0% | |
| CAGTAATACAGAGACAATTA+AGG | + | tig0021418:36545-36564 | None:intergenic | 30.0% | |
| GACACACCTAAAAGTAAATT+GGG | + | tig0021418:36619-36638 | None:intergenic | 30.0% | |
| GAACTGAAAAGGAGAAGAAT+AGG | - | tig0021418:33967-33986 | Msa1391280:CDS | 35.0% | |
| CAACTGAAAAGGAGAAGAAT+AGG | - | tig0021418:34021-34040 | Msa1391280:CDS | 35.0% | |
| CAACTGAAAAGGAGAAGAAT+AGG | - | tig0021418:34021-34040 | Msa1391280:CDS | 35.0% | |
| ! | AATAGGTCTGGAACTGAAAA+GGG | - | tig0021418:33984-34003 | Msa1391280:CDS | 35.0% |
| !! | TTGATTTGTTTAACGCAGCT+TGG | - | tig0021418:34256-34275 | Msa1391280:intron | 35.0% |
| !! | TGATTTGTTTAACGCAGCTT+GGG | - | tig0021418:34257-34276 | Msa1391280:intron | 35.0% |
| AAGCAAAGACCTACCAAAAA+AGG | - | tig0021418:34358-34377 | Msa1391280:intron | 35.0% | |
| ATGGAATAGCAAATGGACAT+TGG | - | tig0021418:34468-34487 | Msa1391280:intron | 35.0% | |
| AAAAAACCTTTGTCGTCCTT+AGG | + | tig0021418:34596-34615 | None:intergenic | 35.0% | |
| TATATTACAATCTTCCACGG+TGG | + | tig0021418:34725-34744 | None:intergenic | 35.0% | |
| GTGGTGCATCATAATATTTG+TGG | + | tig0021418:34766-34785 | None:intergenic | 35.0% | |
| ATGAGAAGAGAGATAAAGCT+GGG | + | tig0021418:34817-34836 | None:intergenic | 35.0% | |
| TGTACCATAACAGATTCTGT+AGG | - | tig0021418:34858-34877 | Msa1391280:intron | 35.0% | |
| ACTTCCTACAGAATCTGTTA+TGG | + | tig0021418:34865-34884 | None:intergenic | 35.0% | |
| ! | GTTAATTTGGTAGGAAAGGT+TGG | + | tig0021418:34911-34930 | None:intergenic | 35.0% |
| !! | TTTATTGGCGATGGATTTTG+GGG | - | tig0021418:35502-35521 | Msa1391280:intron | 35.0% |
| AGGACAAATACGAATGGAAT+TGG | - | tig0021418:35525-35544 | Msa1391280:intron | 35.0% | |
| !! | AGTTTTAGTGCTTGAAGGTT+GGG | - | tig0021418:35583-35602 | Msa1391280:intron | 35.0% |
| ! | CTGGTCTGTTTTGTGTTTTA+GGG | - | tig0021418:35683-35702 | Msa1391280:intron | 35.0% |
| !! | TGGTCTGTTTTGTGTTTTAG+GGG | - | tig0021418:35684-35703 | Msa1391280:intron | 35.0% |
| ! | AACTCACTGTTTTACATGAC+AGG | + | tig0021418:35729-35748 | None:intergenic | 35.0% |
| !! | AGCTGATTTCCTTTCCTTTT+AGG | - | tig0021418:35774-35793 | Msa1391280:intron | 35.0% |
| AAATTCGCGAATGAAGAAAC+TGG | + | tig0021418:35891-35910 | None:intergenic | 35.0% | |
| TTACAGTTGCATCCATGATA+AGG | + | tig0021418:36024-36043 | None:intergenic | 35.0% | |
| GAAATTCCCAGGTCTAATAA+TGG | - | tig0021418:36087-36106 | Msa1391280:intron | 35.0% | |
| ATGCAACCATTATTAGACCT+GGG | + | tig0021418:36096-36115 | None:intergenic | 35.0% | |
| AATGCAACCATTATTAGACC+TGG | + | tig0021418:36097-36116 | None:intergenic | 35.0% | |
| ! | GAAAATAATGATGTTGGTGG+TGG | + | tig0021418:36124-36143 | None:intergenic | 35.0% |
| ACCATTCGAGAAAGAATCAT+GGG | + | tig0021418:36194-36213 | None:intergenic | 35.0% | |
| TACCATTCGAGAAAGAATCA+TGG | + | tig0021418:36195-36214 | None:intergenic | 35.0% | |
| TCTTTCTCGAATGGTATCAA+CGG | - | tig0021418:36199-36218 | Msa1391280:intron | 35.0% | |
| !!! | GTTCGTAGTTTTTGAGATCT+TGG | - | tig0021418:36221-36240 | Msa1391280:intron | 35.0% |
| !!! | TTGGTTGTTTTTGGGTGAAT+CGG | - | tig0021418:36240-36259 | Msa1391280:intron | 35.0% |
| TATCTTAGAAGTTGTGATGG+TGG | - | tig0021418:36383-36402 | Msa1391280:intron | 35.0% | |
| TAGATGGAGAGAAAGAGATA+CGG | - | tig0021418:36423-36442 | Msa1391280:intron | 35.0% | |
| GGACACACCTAAAAGTAAAT+TGG | + | tig0021418:36620-36639 | None:intergenic | 35.0% | |
| !! | TTACTTTTAGGTGTGTCCTT+CGG | - | tig0021418:36622-36641 | Msa1391280:CDS | 35.0% |
| TTATTCGATCCAAAAACCGA+AGG | + | tig0021418:36641-36660 | None:intergenic | 35.0% | |
| ATGATGGTTCGTAATCACAT+TGG | - | tig0021418:36940-36959 | Msa1391280:CDS | 35.0% | |
| AATTGACAATGCACTCAATG+AGG | - | tig0021418:36966-36985 | Msa1391280:CDS | 35.0% | |
| ! | TTCTTCTCCTTTTCAGTTCC+AGG | + | tig0021418:33966-33985 | None:intergenic | 40.0% |
| GAAAAGGAGAAGAATAGGTC+TGG | - | tig0021418:33972-33991 | Msa1391280:CDS | 40.0% | |
| ! | GAATAGGTCTGGAACTGAAA+AGG | - | tig0021418:33983-34002 | Msa1391280:CDS | 40.0% |
| GAACTGAAAAGGAGAAGAAG+AGG | - | tig0021418:33994-34013 | Msa1391280:CDS | 40.0% | |
| GAAAAGGAGAAGAATAGGTC+TGG | - | tig0021418:33972-33991 | Msa1391280:CDS | 40.0% | |
| ! | GAATAGGTCTGGAACTGAAA+AGG | - | tig0021418:33983-34002 | Msa1391280:CDS | 40.0% |
| GAACTGAAAAGGAGAAGAAG+AGG | - | tig0021418:33994-34013 | Msa1391280:CDS | 40.0% | |
| GAAAAGGAGAAGAATAGGTC+TGG | - | tig0021418:33972-33991 | Msa1391280:CDS | 40.0% | |
| ! | GAATAGGTCTGGAACTGAAA+AGG | - | tig0021418:33983-34002 | Msa1391280:CDS | 40.0% |
| ! | ATAGGTCTGGAACTGAAAAG+GGG | - | tig0021418:33985-34004 | Msa1391280:CDS | 40.0% |
| GCAAAAAGAAACCCAAGCAA+TGG | + | tig0021418:34218-34237 | None:intergenic | 40.0% | |
| TTCCCTTTCCCTTTATTACC+AGG | - | tig0021418:34666-34685 | Msa1391280:intron | 40.0% | |
| AGCCTGGTAATAAAGGGAAA+GGG | + | tig0021418:34671-34690 | None:intergenic | 40.0% | |
| AGACTGAGCCTGGTAATAAA+GGG | + | tig0021418:34677-34696 | None:intergenic | 40.0% | |
| TAGACTGAGCCTGGTAATAA+AGG | + | tig0021418:34678-34697 | None:intergenic | 40.0% | |
| TTTATTACCAGGCTCAGTCT+AGG | - | tig0021418:34677-34696 | Msa1391280:intron | 40.0% | |
| TTATTACCAGGCTCAGTCTA+GGG | - | tig0021418:34678-34697 | Msa1391280:intron | 40.0% | |
| AAAGGAGATGTATAAGGCGT+TGG | + | tig0021418:34788-34807 | None:intergenic | 40.0% | |
| GATAAAGCTGGGATAGAGAA+AGG | + | tig0021418:34806-34825 | None:intergenic | 40.0% | |
| CATGAGAAGAGAGATAAAGC+TGG | + | tig0021418:34818-34837 | None:intergenic | 40.0% | |
| !! | AGGTTGGTGATTTGAAGGTA+GGG | + | tig0021418:34895-34914 | None:intergenic | 40.0% |
| !! | AAGGTTGGTGATTTGAAGGT+AGG | + | tig0021418:34896-34915 | None:intergenic | 40.0% |
| !! | AGGAAAGGTTGGTGATTTGA+AGG | + | tig0021418:34900-34919 | None:intergenic | 40.0% |
| AAGAACTTCTCACTGTCTGT+CGG | + | tig0021418:35143-35162 | None:intergenic | 40.0% | |
| GTGAGAAGTTCTTGAAACCA+AGG | - | tig0021418:35150-35169 | Msa1391280:intron | 40.0% | |
| !!! | TAGAATTGCATTTTGGGGTG+CGG | - | tig0021418:35214-35233 | Msa1391280:intron | 40.0% |
| TGTGTTTACTAGCCAAATGG+AGG | - | tig0021418:35256-35275 | Msa1391280:intron | 40.0% | |
| TCAAAAGACTACCGAGTTGT+TGG | - | tig0021418:35344-35363 | Msa1391280:intron | 40.0% | |
| TAAAGGGGTGAAAGAGATAG+TGG | - | tig0021418:35464-35483 | Msa1391280:intron | 40.0% | |
| !! | CAGTTTTAGTGCTTGAAGGT+TGG | - | tig0021418:35582-35601 | Msa1391280:intron | 40.0% |
| TCCAAAAACAATTGAGCCGA+AGG | + | tig0021418:35616-35635 | None:intergenic | 40.0% | |
| !! | GCTGGTCTGTTTTGTGTTTT+AGG | - | tig0021418:35682-35701 | Msa1391280:intron | 40.0% |
| !! | GGTCTGTTTTGTGTTTTAGG+GGG | - | tig0021418:35685-35704 | Msa1391280:intron | 40.0% |
| CTAACATCAAGACCCAAAAC+TGG | + | tig0021418:35756-35775 | None:intergenic | 40.0% | |
| !!! | TCGGTTGTTGTGGTGTTTTT+TGG | - | tig0021418:35822-35841 | Msa1391280:intron | 40.0% |
| !!! | CGGTTGTTGTGGTGTTTTTT+GGG | - | tig0021418:35823-35842 | Msa1391280:intron | 40.0% |
| !!! | AATTTTTAGTGCGCCTTGCA+CGG | - | tig0021418:35906-35925 | Msa1391280:intron | 40.0% |
| GGAATTTCACAAGGTTCTTC+TGG | + | tig0021418:36075-36094 | None:intergenic | 40.0% | |
| AAGAACCTTGTGAAATTCCC+AGG | - | tig0021418:36076-36095 | Msa1391280:intron | 40.0% | |
| TTAGACCTGGGAATTTCACA+AGG | + | tig0021418:36084-36103 | None:intergenic | 40.0% | |
| ACCCATGATTCTTTCTCGAA+TGG | - | tig0021418:36190-36209 | Msa1391280:intron | 40.0% | |
| GTGATTGAGAGGAAAAGGAA+AGG | - | tig0021418:36276-36295 | Msa1391280:intron | 40.0% | |
| AGAGATAAGGTCCATTTGAG+AGG | - | tig0021418:36343-36362 | Msa1391280:intron | 40.0% | |
| GGTAGAAGAGAGAGTTTAGA+TGG | - | tig0021418:36407-36426 | Msa1391280:intron | 40.0% | |
| GTGAATTATCTGCAAGTGCT+TGG | + | tig0021418:36463-36482 | None:intergenic | 40.0% | |
| AGATAATTCACTCATCCACG+AGG | - | tig0021418:36472-36491 | Msa1391280:intron | 40.0% | |
| GATAATTCACTCATCCACGA+GGG | - | tig0021418:36473-36492 | Msa1391280:intron | 40.0% | |
| ! | TAATAAGGCACCTTCTAAGG+TGG | + | tig0021418:36517-36536 | None:intergenic | 40.0% |
| ! | TGGTAATAAGGCACCTTCTA+AGG | + | tig0021418:36520-36539 | None:intergenic | 40.0% |
| TTGAGACAGTGTTCTCTTGT+AGG | - | tig0021418:36573-36592 | Msa1391280:intron | 40.0% | |
| TGAGACAGTGTTCTCTTGTA+GGG | - | tig0021418:36574-36593 | Msa1391280:intron | 40.0% | |
| CAAACATCATCCAACTTGGT+GGG | + | tig0021418:36835-36854 | None:intergenic | 40.0% | |
| GAAGAGGTCTGCAACTGAAA+AGG | - | tig0021418:34010-34029 | Msa1391280:CDS | 45.0% | |
| GAAGAGGTCTGCAACTGAAA+AGG | - | tig0021418:34010-34029 | Msa1391280:CDS | 45.0% | |
| GAACTGAAAAGGGGAAGAAG+AGG | - | tig0021418:34102-34121 | Msa1391280:intron | 45.0% | |
| TCACGCATCTCCCAAAAAGA+CGG | - | tig0021418:34142-34161 | Msa1391280:intron | 45.0% | |
| ! | TCGTCGTTGACCGTCTTTTT+GGG | + | tig0021418:34155-34174 | None:intergenic | 45.0% |
| ! | TTCGTCGTTGACCGTCTTTT+TGG | + | tig0021418:34156-34175 | None:intergenic | 45.0% |
| GAAATCGTCGTATGTGAGGT+CGG | - | tig0021418:34173-34192 | Msa1391280:intron | 45.0% | |
| AAACCCAAGCAATGGAGTTG+GGG | + | tig0021418:34210-34229 | None:intergenic | 45.0% | |
| GAAACCCAAGCAATGGAGTT+GGG | + | tig0021418:34211-34230 | None:intergenic | 45.0% | |
| AGAAACCCAAGCAATGGAGT+TGG | + | tig0021418:34212-34231 | None:intergenic | 45.0% | |
| GGAAGGTTTCTGTGAAGCAT+TGG | - | tig0021418:34287-34306 | Msa1391280:intron | 45.0% | |
| !! | TCTGTGAAGCATTGGAACGA+AGG | - | tig0021418:34295-34314 | Msa1391280:intron | 45.0% |
| !! | CTGTGAAGCATTGGAACGAA+GGG | - | tig0021418:34296-34315 | Msa1391280:intron | 45.0% |
| ! | AGCATTGGAACGAAGGGATT+CGG | - | tig0021418:34302-34321 | Msa1391280:intron | 45.0% |
| CAAAAGCCTAAGGACGACAA+AGG | - | tig0021418:34587-34606 | Msa1391280:intron | 45.0% | |
| GAGCCTGGTAATAAAGGGAA+AGG | + | tig0021418:34672-34691 | None:intergenic | 45.0% | |
| !! | GGTTGGTGATTTGAAGGTAG+GGG | + | tig0021418:34894-34913 | None:intergenic | 45.0% |
| !!! | AGAATTGCATTTTGGGGTGC+GGG | - | tig0021418:35215-35234 | Msa1391280:intron | 45.0% |
| GTTTACTAGCCAAATGGAGG+CGG | - | tig0021418:35259-35278 | Msa1391280:intron | 45.0% | |
| TTTACTAGCCAAATGGAGGC+GGG | - | tig0021418:35260-35279 | Msa1391280:intron | 45.0% | |
| ! | ACGCGGCGATTTGGAAAATT+TGG | - | tig0021418:35406-35425 | Msa1391280:intron | 45.0% |
| TTGGGGAGGACAAATACGAA+TGG | - | tig0021418:35519-35538 | Msa1391280:intron | 45.0% | |
| CGAATGGAATTGGAACCTGA+TGG | - | tig0021418:35535-35554 | Msa1391280:intron | 45.0% | |
| ! | ATGGAATGCTTGTTGCGCTA+AGG | - | tig0021418:35554-35573 | Msa1391280:intron | 45.0% |
| ! | TGGAATGCTTGTTGCGCTAA+GGG | - | tig0021418:35555-35574 | Msa1391280:intron | 45.0% |
| !! | TGGGCAGTTTTAGTGCTTGA+AGG | - | tig0021418:35578-35597 | Msa1391280:intron | 45.0% |
| ! | GCCTTCGGCTCAATTGTTTT+TGG | - | tig0021418:35612-35631 | Msa1391280:intron | 45.0% |
| !!! | TTGCGGTGCTGCCATATTTT+CGG | - | tig0021418:35640-35659 | Msa1391280:intron | 45.0% |
| CTGTGCACAGTCCGAAAATA+TGG | + | tig0021418:35654-35673 | None:intergenic | 45.0% | |
| ! | CATATTTTCGGACTGTGCAC+AGG | - | tig0021418:35652-35671 | Msa1391280:intron | 45.0% |
| ! | AGTGAGTTGCTGCCAGTTTT+GGG | - | tig0021418:35741-35760 | Msa1391280:intron | 45.0% |
| CAGCAGCTACCTAAAAGGAA+AGG | + | tig0021418:35786-35805 | None:intergenic | 45.0% | |
| TATTAACGACGAACCGTGCA+AGG | + | tig0021418:35922-35941 | None:intergenic | 45.0% | |
| TCACAAGGTTCTTCTGGTCA+TGG | + | tig0021418:36069-36088 | None:intergenic | 45.0% | |
| !! | CTTAGAAGTTGTGATGGTGG+AGG | - | tig0021418:36386-36405 | Msa1391280:intron | 45.0% |
| ATCTGCAAGTGCTTGGTATG+CGG | + | tig0021418:36456-36475 | None:intergenic | 45.0% | |
| GTAACTCATATCATCCCTCG+TGG | + | tig0021418:36490-36509 | None:intergenic | 45.0% | |
| AGTTACCCATCCACCTTAGA+AGG | - | tig0021418:36504-36523 | Msa1391280:intron | 45.0% | |
| ! | TAGGTGTGTCCTTCGGTTTT+TGG | - | tig0021418:36629-36648 | Msa1391280:CDS | 45.0% |
| ! | ATCATCCAACTTGGTGGGAA+GGG | + | tig0021418:36830-36849 | None:intergenic | 45.0% |
| CCAAACATCATCCAACTTGG+TGG | + | tig0021418:36836-36855 | None:intergenic | 45.0% | |
| ! | CCACCAAGTTGGATGATGTT+TGG | - | tig0021418:36833-36852 | Msa1391280:CDS | 45.0% |
| CCACCAAACATCATCCAACT+TGG | + | tig0021418:36839-36858 | None:intergenic | 45.0% | |
| ! | CCAAGTTGGATGATGTTTGG+TGG | - | tig0021418:36836-36855 | Msa1391280:CDS | 45.0% |
| ! | AGTTGGATGATGTTTGGTGG+TGG | - | tig0021418:36839-36858 | Msa1391280:CDS | 45.0% |
| AGGAACCTCATTGACCATGT+CGG | - | tig0021418:36912-36931 | Msa1391280:CDS | 45.0% | |
| AACCATCATCAACTCCGACA+TGG | + | tig0021418:36929-36948 | None:intergenic | 45.0% | |
| CGACGAAATCGTCGTATGTG+AGG | - | tig0021418:34169-34188 | Msa1391280:intron | 50.0% | |
| ! | CAATGGAGTTGGGGGTTTTG+AGG | + | tig0021418:34201-34220 | None:intergenic | 50.0% |
| AAACCCCCAACTCCATTGCT+TGG | - | tig0021418:34203-34222 | Msa1391280:intron | 50.0% | |
| AACCCCCAACTCCATTGCTT+GGG | - | tig0021418:34204-34223 | Msa1391280:intron | 50.0% | |
| AACCCAAGCAATGGAGTTGG+GGG | + | tig0021418:34209-34228 | None:intergenic | 50.0% | |
| TAACGCAGCTTGGGACAAAG+AGG | - | tig0021418:34266-34285 | Msa1391280:intron | 50.0% | |
| CTAGGGTGGATGAGCTTGAT+AGG | - | tig0021418:34695-34714 | Msa1391280:intron | 50.0% | |
| !! | GGAGATGTATAAGGCGTTGG+TGG | + | tig0021418:34785-34804 | None:intergenic | 50.0% |
| TTACTAGCCAAATGGAGGCG+GGG | - | tig0021418:35261-35280 | Msa1391280:intron | 50.0% | |
| TGGAAGGGGATAACGCTCTT+TGG | - | tig0021418:35290-35309 | Msa1391280:intron | 50.0% | |
| AGGGGATAACGCTCTTTGGA+TGG | - | tig0021418:35294-35313 | Msa1391280:intron | 50.0% | |
| GGATAACGCTCTTTGGATGG+AGG | - | tig0021418:35297-35316 | Msa1391280:intron | 50.0% | |
| !! | TCTTTGGATGGAGGTGTTGG+TGG | - | tig0021418:35306-35325 | Msa1391280:intron | 50.0% |
| AGACTACCGAGTTGTTGGTG+AGG | - | tig0021418:35349-35368 | Msa1391280:intron | 50.0% | |
| ! | GACTACCGAGTTGTTGGTGA+GGG | - | tig0021418:35350-35369 | Msa1391280:intron | 50.0% |
| ! | ACTACCGAGTTGTTGGTGAG+GGG | - | tig0021418:35351-35370 | Msa1391280:intron | 50.0% |
| ACTACCCCTCACCAACAACT+CGG | + | tig0021418:35358-35377 | None:intergenic | 50.0% | |
| ! | TGTTGGTGAGGGGTAGTACT+TGG | - | tig0021418:35361-35380 | Msa1391280:intron | 50.0% |
| TGCCAAATCAACCTCAAGCG+CGG | + | tig0021418:35387-35406 | None:intergenic | 50.0% | |
| !! | CTTGAGGTTGATTTGGCACG+CGG | - | tig0021418:35389-35408 | Msa1391280:intron | 50.0% |
| ! | AGGGGTGAAAGAGATAGTGG+AGG | - | tig0021418:35467-35486 | Msa1391280:intron | 50.0% |
| !! | ATTGGCGATGGATTTTGGGG+AGG | - | tig0021418:35505-35524 | Msa1391280:intron | 50.0% |
| AGCGCAACAAGCATTCCATC+AGG | + | tig0021418:35553-35572 | None:intergenic | 50.0% | |
| ! | AATGCTTGTTGCGCTAAGGG+TGG | - | tig0021418:35558-35577 | Msa1391280:intron | 50.0% |
| ! | ATGCTTGTTGCGCTAAGGGT+GGG | - | tig0021418:35559-35578 | Msa1391280:intron | 50.0% |
| CATGACAGGAGAATCGCAAC+AGG | + | tig0021418:35715-35734 | None:intergenic | 50.0% | |
| ! | CAGTGAGTTGCTGCCAGTTT+TGG | - | tig0021418:35740-35759 | Msa1391280:intron | 50.0% |
| ACTGGCAGCAGCTACCTAAA+AGG | + | tig0021418:35791-35810 | None:intergenic | 50.0% | |
| ! | TAGGTAGCTGCTGCCAGTTT+TGG | - | tig0021418:35793-35812 | Msa1391280:intron | 50.0% |
| ! | AGGTAGCTGCTGCCAGTTTT+GGG | - | tig0021418:35794-35813 | Msa1391280:intron | 50.0% |
| !!! | CTGCCAGTTTTGGGTGCTAT+CGG | - | tig0021418:35803-35822 | Msa1391280:intron | 50.0% |
| CAACCGATAGCACCCAAAAC+TGG | + | tig0021418:35809-35828 | None:intergenic | 50.0% | |
| ! | TTGGGTGCTATCGGTTGTTG+TGG | - | tig0021418:35812-35831 | Msa1391280:intron | 50.0% |
| AGGTTCTTCTGGTCATGGCT+TGG | + | tig0021418:36064-36083 | None:intergenic | 50.0% | |
| !! | AGGCACCTTCTAAGGTGGAT+GGG | + | tig0021418:36512-36531 | None:intergenic | 50.0% |
| !! | AAGGCACCTTCTAAGGTGGA+TGG | + | tig0021418:36513-36532 | None:intergenic | 50.0% |
| TCATTCCCTTCCCACCAAGT+TGG | - | tig0021418:36822-36841 | Msa1391280:CDS | 50.0% | |
| ! | CATCATCCAACTTGGTGGGA+AGG | + | tig0021418:36831-36850 | None:intergenic | 50.0% |
| CAACTCCGACATGGTCAATG+AGG | + | tig0021418:36920-36939 | None:intergenic | 50.0% | |
| !! | GACCATGTCGGAGTTGATGA+TGG | - | tig0021418:36924-36943 | Msa1391280:CDS | 50.0% |
| GCAGCTTGGGACAAAGAGGA+AGG | - | tig0021418:34270-34289 | Msa1391280:intron | 55.0% | |
| TTACCAGGCTCAGTCTAGGG+TGG | - | tig0021418:34681-34700 | Msa1391280:intron | 55.0% | |
| GCTTGATAGGTCTTCCACCG+TGG | - | tig0021418:34708-34727 | Msa1391280:intron | 55.0% | |
| TACTAGCCAAATGGAGGCGG+GGG | - | tig0021418:35262-35281 | Msa1391280:intron | 55.0% | |
| ! | CGCTCTTTGGATGGAGGTGT+TGG | - | tig0021418:35303-35322 | Msa1391280:intron | 55.0% |
| ! | TGATTTGGCACGCGGCGATT+TGG | - | tig0021418:35397-35416 | Msa1391280:intron | 55.0% |
| AAGGTTGGGCATGCTGCCTT+CGG | - | tig0021418:35597-35616 | Msa1391280:intron | 55.0% | |
| CATCCACCCTAGACTGAGCC+TGG | + | tig0021418:34687-34706 | None:intergenic | 60.0% | |
| TGGGGTGCGGGATGTCAAAG+TGG | - | tig0021418:35227-35246 | Msa1391280:intron | 60.0% | |
| ACTAGCCAAATGGAGGCGGG+GGG | - | tig0021418:35263-35282 | Msa1391280:intron | 60.0% | |
| GTAGTACTTGGCCGCGCTTG+AGG | - | tig0021418:35373-35392 | Msa1391280:intron | 60.0% | |
| ! | GGCCGCGCTTGAGGTTGATT+TGG | - | tig0021418:35382-35401 | Msa1391280:intron | 60.0% |
| CTGTGCACAGGTTCTGCTGC+TGG | - | tig0021418:35664-35683 | Msa1391280:intron | 60.0% | |
| ACCAACCCCCCGCCTCCATT+TGG | + | tig0021418:35271-35290 | None:intergenic | 65.0% | |
| AAATGGAGGCGGGGGGTTGG+TGG | - | tig0021418:35270-35289 | Msa1391280:intron | 65.0% | |
| GCCAAATGGAGGCGGGGGGT+TGG | - | tig0021418:35267-35286 | Msa1391280:intron | 70.0% | |
| !! | GAGGCGGGGGGTTGGTGGAA+GGG | - | tig0021418:35275-35294 | Msa1391280:intron | 70.0% |
| !! | AGGCGGGGGGTTGGTGGAAG+GGG | - | tig0021418:35276-35295 | Msa1391280:intron | 70.0% |
| !! | GGAGGCGGGGGGTTGGTGGA+AGG | - | tig0021418:35274-35293 | Msa1391280:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021418 | gene | 33960 | 36996 | 33960 | ID=Msa1391280;Name=Msa1391280 |
| tig0021418 | mRNA | 33960 | 36996 | 33960 | ID=Msa1391280-mRNA-1;Parent=Msa1391280;Name=Msa1391280-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|0.66|1|1|3|0|139 |
| tig0021418 | exon | 36766 | 36996 | 36766 | ID=Msa1391280-mRNA-1:exon:12619;Parent=Msa1391280-mRNA-1 |
| tig0021418 | exon | 36577 | 36682 | 36577 | ID=Msa1391280-mRNA-1:exon:12618;Parent=Msa1391280-mRNA-1 |
| tig0021418 | exon | 33960 | 34042 | 33960 | ID=Msa1391280-mRNA-1:exon:12617;Parent=Msa1391280-mRNA-1 |
| tig0021418 | CDS | 36766 | 36996 | 36766 | ID=Msa1391280-mRNA-1:cds;Parent=Msa1391280-mRNA-1 |
| tig0021418 | CDS | 36577 | 36682 | 36577 | ID=Msa1391280-mRNA-1:cds;Parent=Msa1391280-mRNA-1 |
| tig0021418 | CDS | 33960 | 34042 | 33960 | ID=Msa1391280-mRNA-1:cds;Parent=Msa1391280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
