Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391940 | YP_009237638.1 | 100.000 | 349 | 0 | 0 | 1 | 349 | 1 | 349 | 0.0 | 710 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391940 | sp|Q31708|RT04_ARATH | 82.102 | 352 | 54 | 5 | 1 | 349 | 17 | 362 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391940 | A0A072TH07 | 100.000 | 349 | 0 | 0 | 1 | 349 | 1 | 349 | 0.0 | 710 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069510 | Msa1391940 | 0.816034 | 6.807481e-52 | -8.615850e-47 |
| Msa1391940 | Msa1391960 | 0.828337 | 9.506602e-55 | -8.615850e-47 |
| Msa1391940 | Msa1453840 | 0.984038 | 2.060195e-159 | -8.615850e-47 |
| Msa0983360 | Msa1391940 | 0.820715 | 5.923560e-53 | -8.615850e-47 |
| Msa0919990 | Msa1391940 | 0.807071 | 6.045350e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391940 | MtrunA17_MTg0491671 | 100.000 | 349 | 0 | 0 | 1 | 349 | 1 | 349 | 0.0 | 710 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391940 | ATMG00290.1 | 84.943 | 352 | 44 | 5 | 1 | 349 | 17 | 362 | 0.0 | 533 |
| Msa1391940 | AT2G07734.1 | 84.943 | 352 | 44 | 5 | 1 | 349 | 17 | 362 | 0.0 | 533 |
Find 72 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACGTCCGATCTTGTTTC+TGG | 0.154996 | tig0021468:+35584 | None:intergenic |
| TTCTCTTCATAGTAAACTTA+TGG | 0.166150 | tig0021468:+34988 | None:intergenic |
| AAAACTTGTCGTCTACTTTC+AGG | 0.216989 | tig0021468:-35830 | Msa1391940:CDS |
| GAGGAATAGTTTCACGAAAA+TGG | 0.254003 | tig0021468:+35549 | None:intergenic |
| ACGCGGATCTTTATATGTTT+TGG | 0.279472 | tig0021468:+34802 | None:intergenic |
| CCATAAAATACCACCGCTTT+TGG | 0.281425 | tig0021468:+34903 | None:intergenic |
| TTTGAAAGAACAAAGAAGTT+TGG | 0.285807 | tig0021468:-35203 | Msa1391940:CDS |
| GTTCTTCTCCACATTCTTAC+CGG | 0.286315 | tig0021468:+35332 | None:intergenic |
| AACAAGATCGGACGTTATTC+CGG | 0.309578 | tig0021468:-35579 | Msa1391940:CDS |
| TCTTCTCTTCGATAAGAATA+GGG | 0.348985 | tig0021468:+35106 | None:intergenic |
| CAAACCCTTCGATGACTTAT+CGG | 0.352144 | tig0021468:+35515 | None:intergenic |
| TCTCTTCATAGTAAACTTAT+GGG | 0.361733 | tig0021468:+34989 | None:intergenic |
| CCGCTCCGAAGAGGAAGGTT+TGG | 0.362903 | tig0021468:+34837 | None:intergenic |
| CGAACTACCTACTCATTATT+CGG | 0.374771 | tig0021468:-34943 | Msa1391940:CDS |
| TCTTCTTGTTCCTCAATCTT+CGG | 0.379001 | tig0021468:+35762 | None:intergenic |
| GAATCCGCGGTGAAGAAATA+AGG | 0.383183 | tig0021468:-35412 | Msa1391940:CDS |
| TAGGTGGAACCATTCTGTTT+TGG | 0.386834 | tig0021468:+35310 | None:intergenic |
| TGGGTAAATCCCCATGAAAA+AGG | 0.391419 | tig0021468:+35663 | None:intergenic |
| TTCTTCTCTTCGATAAGAAT+AGG | 0.401656 | tig0021468:+35105 | None:intergenic |
| GTTTCTGGATTGAGTAGAAA+AGG | 0.411543 | tig0021468:+35599 | None:intergenic |
| TTGTTCGAGTAGGAAGATAT+CGG | 0.417257 | tig0021468:+35072 | None:intergenic |
| TCCTCTGTGCATCTCTGTGA+TGG | 0.419702 | tig0021468:+35643 | None:intergenic |
| AAAGAAGAGTTGTAAACTAT+AGG | 0.453297 | tig0021468:+35044 | None:intergenic |
| ACATTCTTACCGGGTGATCC+AGG | 0.465484 | tig0021468:+35342 | None:intergenic |
| ACTTTCGTGTAGTTTGTGAT+TGG | 0.473847 | tig0021468:+35690 | None:intergenic |
| AAGATCCAAACCTTCCTCTT+CGG | 0.476009 | tig0021468:-34842 | Msa1391940:CDS |
| GTCTACTTTCAGGAAATGTT+CGG | 0.476906 | tig0021468:-35820 | Msa1391940:CDS |
| TGAGGGATGTGACCTATGTT+AGG | 0.479008 | tig0021468:+34879 | None:intergenic |
| CTTCCTCTTCGGAGCGGAAA+CGG | 0.483656 | tig0021468:-34831 | Msa1391940:CDS |
| GAAGGAAGAGAAGAATCAAA+AGG | 0.500581 | tig0021468:-34968 | Msa1391940:CDS |
| TCACGAAAATGGAGACGAAC+CGG | 0.502616 | tig0021468:+35560 | None:intergenic |
| TTTCTGGATTGAGTAGAAAA+GGG | 0.504381 | tig0021468:+35600 | None:intergenic |
| CGTTTCCGCTCCGAAGAGGA+AGG | 0.512307 | tig0021468:+34832 | None:intergenic |
| TTCTTCTCCACATTCTTACC+GGG | 0.515532 | tig0021468:+35333 | None:intergenic |
| CCACCTACTCAAAACTAAGC+GGG | 0.517088 | tig0021468:-35294 | Msa1391940:CDS |
| CTTCGGAGCGGAAACGGACG+TGG | 0.519114 | tig0021468:-34825 | Msa1391940:CDS |
| CATTCTGTTGTGCTCAGCGA+AGG | 0.523997 | tig0021468:+35154 | None:intergenic |
| TCCTCAATCTTCGGAGAATG+CGG | 0.524037 | tig0021468:+35771 | None:intergenic |
| GCCGCATTCTCCGAAGATTG+AGG | 0.524279 | tig0021468:-35772 | Msa1391940:CDS |
| CCTCTGTGCATCTCTGTGAT+GGG | 0.548559 | tig0021468:+35644 | None:intergenic |
| AGGAAAATTCCTGGATCACC+CGG | 0.551944 | tig0021468:-35351 | Msa1391940:CDS |
| GCCGCCTACTACTAAAATCC+CGG | 0.555534 | tig0021468:-35268 | Msa1391940:CDS |
| CTCTTCATAGTAAACTTATG+GGG | 0.565331 | tig0021468:+34990 | None:intergenic |
| GAAAATGACGCGAGAATCCG+CGG | 0.565337 | tig0021468:-35425 | Msa1391940:CDS |
| ATAGGACTTCTTGTTCGAGT+AGG | 0.570822 | tig0021468:+35062 | None:intergenic |
| TCTTCATAGTAAACTTATGG+GGG | 0.571794 | tig0021468:+34991 | None:intergenic |
| GGCAGCCGATAAGTCATCGA+AGG | 0.579268 | tig0021468:-35520 | Msa1391940:CDS |
| TCTTTCAATCTTATGTCGTG+AGG | 0.582425 | tig0021468:+34861 | None:intergenic |
| CTTATCGGCTGCCTTGCTTG+AGG | 0.586187 | tig0021468:+35530 | None:intergenic |
| ATAAGTTTACTATGAAGAGA+AGG | 0.589517 | tig0021468:-34986 | Msa1391940:CDS |
| CGTCCGTTTCCGCTCCGAAG+AGG | 0.592480 | tig0021468:+34828 | None:intergenic |
| TGGATCACCCGGTAAGAATG+TGG | 0.593751 | tig0021468:-35340 | Msa1391940:CDS |
| CTTTCAATCTTATGTCGTGA+GGG | 0.596309 | tig0021468:+34862 | None:intergenic |
| GTGAAACTATTCCTCAAGCA+AGG | 0.600900 | tig0021468:-35541 | Msa1391940:CDS |
| AAAAGATATTAGATCACCGT+GGG | 0.612453 | tig0021468:+35451 | None:intergenic |
| GGAGAAGAACCAAAACAGAA+TGG | 0.614037 | tig0021468:-35319 | Msa1391940:CDS |
| GGTTTGTGTGAATAATCGAA+TGG | 0.625206 | tig0021468:-35498 | Msa1391940:CDS |
| CTGAGCACAACAGAATGAAG+AGG | 0.630350 | tig0021468:-35148 | Msa1391940:CDS |
| CACCTACTCAAAACTAAGCG+GGG | 0.643253 | tig0021468:-35293 | Msa1391940:CDS |
| GAATCATAGAACACCAAAAG+CGG | 0.646473 | tig0021468:-34916 | Msa1391940:CDS |
| ACTCAATCCAGAAACAAGAT+CGG | 0.651613 | tig0021468:-35591 | Msa1391940:CDS |
| ACTCGTTTGAAAGTTTCCCA+CGG | 0.653886 | tig0021468:-35467 | Msa1391940:CDS |
| CTTCATAGTAAACTTATGGG+GGG | 0.657996 | tig0021468:+34992 | None:intergenic |
| ACTACCTACTCATTATTCGG+AGG | 0.659920 | tig0021468:-34940 | Msa1391940:CDS |
| TCATAGAACACCAAAAGCGG+TGG | 0.663620 | tig0021468:-34913 | Msa1391940:CDS |
| GCAGCCGATAAGTCATCGAA+GGG | 0.664381 | tig0021468:-35519 | Msa1391940:CDS |
| TCCACCTACTCAAAACTAAG+CGG | 0.674271 | tig0021468:-35295 | Msa1391940:CDS |
| ATCTCCTTATTTCTTCACCG+CGG | 0.682529 | tig0021468:+35408 | None:intergenic |
| CCAAACCTTCCTCTTCGGAG+CGG | 0.683868 | tig0021468:-34837 | Msa1391940:CDS |
| GAAAAGATATTAGATCACCG+TGG | 0.696122 | tig0021468:+35450 | None:intergenic |
| TTCACCTCCGAATAATGAGT+AGG | 0.702507 | tig0021468:+34936 | None:intergenic |
| CCCATCACAGAGATGCACAG+AGG | 0.749745 | tig0021468:-35644 | Msa1391940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCAGTTGAAAAAATCAT+AGG | - | tig0021468:35280-35299 | Msa1391940:CDS | 20.0% |
| !! | ATATCAGTTGAAAAAATCAT+AGG | - | tig0021468:35280-35299 | Msa1391940:CDS | 20.0% |
| !! | TAACTGTTAAGATTTTCTCT+CGG | + | tig0021468:34938-34957 | None:intergenic | 25.0% |
| ! | AAAAATCATAGGAAAATTCC+TGG | - | tig0021468:35291-35310 | Msa1391940:CDS | 25.0% |
| ! | TTTGAAAGAACAAAGAAGTT+TGG | - | tig0021468:35448-35467 | Msa1391940:CDS | 25.0% |
| ! | AAAGAAGAGTTGTAAACTAT+AGG | + | tig0021468:35610-35629 | None:intergenic | 25.0% |
| ! | TCTCTTCATAGTAAACTTAT+GGG | + | tig0021468:35665-35684 | None:intergenic | 25.0% |
| ! | TTCTCTTCATAGTAAACTTA+TGG | + | tig0021468:35666-35685 | None:intergenic | 25.0% |
| ! | ATAAGTTTACTATGAAGAGA+AGG | - | tig0021468:35665-35684 | Msa1391940:CDS | 25.0% |
| !! | TAACTGTTAAGATTTTCTCT+CGG | + | tig0021468:34938-34957 | None:intergenic | 25.0% |
| ! | AAAAATCATAGGAAAATTCC+TGG | - | tig0021468:35291-35310 | Msa1391940:CDS | 25.0% |
| ! | TTTGAAAGAACAAAGAAGTT+TGG | - | tig0021468:35448-35467 | Msa1391940:CDS | 25.0% |
| ! | AAAGAAGAGTTGTAAACTAT+AGG | + | tig0021468:35610-35629 | None:intergenic | 25.0% |
| ! | TCTCTTCATAGTAAACTTAT+GGG | + | tig0021468:35665-35684 | None:intergenic | 25.0% |
| ! | TTCTCTTCATAGTAAACTTA+TGG | + | tig0021468:35666-35685 | None:intergenic | 25.0% |
| ! | ATAAGTTTACTATGAAGAGA+AGG | - | tig0021468:35665-35684 | Msa1391940:CDS | 25.0% |
| TTTCTGGATTGAGTAGAAAA+GGG | + | tig0021468:35054-35073 | None:intergenic | 30.0% | |
| AAAAGATATTAGATCACCGT+GGG | + | tig0021468:35203-35222 | None:intergenic | 30.0% | |
| TCTTCTCTTCGATAAGAATA+GGG | + | tig0021468:35548-35567 | None:intergenic | 30.0% | |
| TTCTTCTCTTCGATAAGAAT+AGG | + | tig0021468:35549-35568 | None:intergenic | 30.0% | |
| TCTTCATAGTAAACTTATGG+GGG | + | tig0021468:35663-35682 | None:intergenic | 30.0% | |
| CTCTTCATAGTAAACTTATG+GGG | + | tig0021468:35664-35683 | None:intergenic | 30.0% | |
| ! | GTATTTTATGGACCTAACAT+AGG | - | tig0021468:35760-35779 | Msa1391940:CDS | 30.0% |
| TTTCTGGATTGAGTAGAAAA+GGG | + | tig0021468:35054-35073 | None:intergenic | 30.0% | |
| AAAAGATATTAGATCACCGT+GGG | + | tig0021468:35203-35222 | None:intergenic | 30.0% | |
| TCTTCTCTTCGATAAGAATA+GGG | + | tig0021468:35548-35567 | None:intergenic | 30.0% | |
| TTCTTCTCTTCGATAAGAAT+AGG | + | tig0021468:35549-35568 | None:intergenic | 30.0% | |
| TCTTCATAGTAAACTTATGG+GGG | + | tig0021468:35663-35682 | None:intergenic | 30.0% | |
| CTCTTCATAGTAAACTTATG+GGG | + | tig0021468:35664-35683 | None:intergenic | 30.0% | |
| ! | GTATTTTATGGACCTAACAT+AGG | - | tig0021468:35760-35779 | Msa1391940:CDS | 30.0% |
| AAAACTTGTCGTCTACTTTC+AGG | - | tig0021468:34821-34840 | Msa1391940:CDS | 35.0% | |
| GTCTACTTTCAGGAAATGTT+CGG | - | tig0021468:34831-34850 | Msa1391940:CDS | 35.0% | |
| TCTTCTTGTTCCTCAATCTT+CGG | + | tig0021468:34892-34911 | None:intergenic | 35.0% | |
| ! | ACTTTCGTGTAGTTTGTGAT+TGG | + | tig0021468:34964-34983 | None:intergenic | 35.0% |
| ! | GTTTCTGGATTGAGTAGAAA+AGG | + | tig0021468:35055-35074 | None:intergenic | 35.0% |
| ACTCAATCCAGAAACAAGAT+CGG | - | tig0021468:35060-35079 | Msa1391940:CDS | 35.0% | |
| GAGGAATAGTTTCACGAAAA+TGG | + | tig0021468:35105-35124 | None:intergenic | 35.0% | |
| GGTTTGTGTGAATAATCGAA+TGG | - | tig0021468:35153-35172 | Msa1391940:CDS | 35.0% | |
| GAAAAGATATTAGATCACCG+TGG | + | tig0021468:35204-35223 | None:intergenic | 35.0% | |
| !! | AAAACCGGGATTTTAGTAGT+AGG | + | tig0021468:35390-35409 | None:intergenic | 35.0% |
| !! | ACTGCCTAAGCATACTTTTT+CGG | + | tig0021468:35476-35495 | None:intergenic | 35.0% |
| TTGTTCGAGTAGGAAGATAT+CGG | + | tig0021468:35582-35601 | None:intergenic | 35.0% | |
| CTTCATAGTAAACTTATGGG+GGG | + | tig0021468:35662-35681 | None:intergenic | 35.0% | |
| GAAGGAAGAGAAGAATCAAA+AGG | - | tig0021468:35683-35702 | Msa1391940:CDS | 35.0% | |
| CGAACTACCTACTCATTATT+CGG | - | tig0021468:35708-35727 | Msa1391940:CDS | 35.0% | |
| GAATCATAGAACACCAAAAG+CGG | - | tig0021468:35735-35754 | Msa1391940:CDS | 35.0% | |
| CTTTCAATCTTATGTCGTGA+GGG | + | tig0021468:35792-35811 | None:intergenic | 35.0% | |
| TCTTTCAATCTTATGTCGTG+AGG | + | tig0021468:35793-35812 | None:intergenic | 35.0% | |
| AAAACTTGTCGTCTACTTTC+AGG | - | tig0021468:34821-34840 | Msa1391940:CDS | 35.0% | |
| GTCTACTTTCAGGAAATGTT+CGG | - | tig0021468:34831-34850 | Msa1391940:CDS | 35.0% | |
| TCTTCTTGTTCCTCAATCTT+CGG | + | tig0021468:34892-34911 | None:intergenic | 35.0% | |
| ! | ACTTTCGTGTAGTTTGTGAT+TGG | + | tig0021468:34964-34983 | None:intergenic | 35.0% |
| ! | GTTTCTGGATTGAGTAGAAA+AGG | + | tig0021468:35055-35074 | None:intergenic | 35.0% |
| ACTCAATCCAGAAACAAGAT+CGG | - | tig0021468:35060-35079 | Msa1391940:CDS | 35.0% | |
| GAGGAATAGTTTCACGAAAA+TGG | + | tig0021468:35105-35124 | None:intergenic | 35.0% | |
| GGTTTGTGTGAATAATCGAA+TGG | - | tig0021468:35153-35172 | Msa1391940:CDS | 35.0% | |
| GAAAAGATATTAGATCACCG+TGG | + | tig0021468:35204-35223 | None:intergenic | 35.0% | |
| !! | AAAACCGGGATTTTAGTAGT+AGG | + | tig0021468:35390-35409 | None:intergenic | 35.0% |
| !! | ACTGCCTAAGCATACTTTTT+CGG | + | tig0021468:35476-35495 | None:intergenic | 35.0% |
| TTGTTCGAGTAGGAAGATAT+CGG | + | tig0021468:35582-35601 | None:intergenic | 35.0% | |
| CTTCATAGTAAACTTATGGG+GGG | + | tig0021468:35662-35681 | None:intergenic | 35.0% | |
| GAAGGAAGAGAAGAATCAAA+AGG | - | tig0021468:35683-35702 | Msa1391940:CDS | 35.0% | |
| CGAACTACCTACTCATTATT+CGG | - | tig0021468:35708-35727 | Msa1391940:CDS | 35.0% | |
| GAATCATAGAACACCAAAAG+CGG | - | tig0021468:35735-35754 | Msa1391940:CDS | 35.0% | |
| CTTTCAATCTTATGTCGTGA+GGG | + | tig0021468:35792-35811 | None:intergenic | 35.0% | |
| TCTTTCAATCTTATGTCGTG+AGG | + | tig0021468:35793-35812 | None:intergenic | 35.0% | |
| !! | GAAAGTTGCCCCTTTTTCAT+GGG | - | tig0021468:34978-34997 | Msa1391940:CDS | 40.0% |
| !! | AAAGTTGCCCCTTTTTCATG+GGG | - | tig0021468:34979-34998 | Msa1391940:CDS | 40.0% |
| GGTAAATCCCCATGAAAAAG+GGG | + | tig0021468:34989-35008 | None:intergenic | 40.0% | |
| GGGTAAATCCCCATGAAAAA+GGG | + | tig0021468:34990-35009 | None:intergenic | 40.0% | |
| TGGGTAAATCCCCATGAAAA+AGG | + | tig0021468:34991-35010 | None:intergenic | 40.0% | |
| ! | ATAACGTCCGATCTTGTTTC+TGG | + | tig0021468:35070-35089 | None:intergenic | 40.0% |
| AACAAGATCGGACGTTATTC+CGG | - | tig0021468:35072-35091 | Msa1391940:CDS | 40.0% | |
| GTGAAACTATTCCTCAAGCA+AGG | - | tig0021468:35110-35129 | Msa1391940:CDS | 40.0% | |
| CAAACCCTTCGATGACTTAT+CGG | + | tig0021468:35139-35158 | None:intergenic | 40.0% | |
| ACTCGTTTGAAAGTTTCCCA+CGG | - | tig0021468:35184-35203 | Msa1391940:CDS | 40.0% | |
| ! | ATCTCCTTATTTCTTCACCG+CGG | + | tig0021468:35246-35265 | None:intergenic | 40.0% |
| TTCTTCTCCACATTCTTACC+GGG | + | tig0021468:35321-35340 | None:intergenic | 40.0% | |
| GTTCTTCTCCACATTCTTAC+CGG | + | tig0021468:35322-35341 | None:intergenic | 40.0% | |
| GGAGAAGAACCAAAACAGAA+TGG | - | tig0021468:35332-35351 | Msa1391940:CDS | 40.0% | |
| ! | TAGGTGGAACCATTCTGTTT+TGG | + | tig0021468:35344-35363 | None:intergenic | 40.0% |
| TCCACCTACTCAAAACTAAG+CGG | - | tig0021468:35356-35375 | Msa1391940:CDS | 40.0% | |
| CAACTGTTGTTGCAAAAACC+GGG | + | tig0021468:35404-35423 | None:intergenic | 40.0% | |
| GCAACTGTTGTTGCAAAAAC+CGG | + | tig0021468:35405-35424 | None:intergenic | 40.0% | |
| ! | GGATCCGAAAAAGTATGCTT+AGG | - | tig0021468:35469-35488 | Msa1391940:CDS | 40.0% |
| ATAGGACTTCTTGTTCGAGT+AGG | + | tig0021468:35592-35611 | None:intergenic | 40.0% | |
| ACTACCTACTCATTATTCGG+AGG | - | tig0021468:35711-35730 | Msa1391940:CDS | 40.0% | |
| TTCACCTCCGAATAATGAGT+AGG | + | tig0021468:35718-35737 | None:intergenic | 40.0% | |
| ! | CCATAAAATACCACCGCTTT+TGG | + | tig0021468:35751-35770 | None:intergenic | 40.0% |
| ! | CCAAAAGCGGTGGTATTTTA+TGG | - | tig0021468:35748-35767 | Msa1391940:CDS | 40.0% |
| AAGATCCAAACCTTCCTCTT+CGG | - | tig0021468:35809-35828 | Msa1391940:CDS | 40.0% | |
| !! | GAAAGTTGCCCCTTTTTCAT+GGG | - | tig0021468:34978-34997 | Msa1391940:CDS | 40.0% |
| !! | AAAGTTGCCCCTTTTTCATG+GGG | - | tig0021468:34979-34998 | Msa1391940:CDS | 40.0% |
| GGTAAATCCCCATGAAAAAG+GGG | + | tig0021468:34989-35008 | None:intergenic | 40.0% | |
| GGGTAAATCCCCATGAAAAA+GGG | + | tig0021468:34990-35009 | None:intergenic | 40.0% | |
| TGGGTAAATCCCCATGAAAA+AGG | + | tig0021468:34991-35010 | None:intergenic | 40.0% | |
| ! | ATAACGTCCGATCTTGTTTC+TGG | + | tig0021468:35070-35089 | None:intergenic | 40.0% |
| AACAAGATCGGACGTTATTC+CGG | - | tig0021468:35072-35091 | Msa1391940:CDS | 40.0% | |
| GTGAAACTATTCCTCAAGCA+AGG | - | tig0021468:35110-35129 | Msa1391940:CDS | 40.0% | |
| CAAACCCTTCGATGACTTAT+CGG | + | tig0021468:35139-35158 | None:intergenic | 40.0% | |
| ACTCGTTTGAAAGTTTCCCA+CGG | - | tig0021468:35184-35203 | Msa1391940:CDS | 40.0% | |
| ! | ATCTCCTTATTTCTTCACCG+CGG | + | tig0021468:35246-35265 | None:intergenic | 40.0% |
| TTCTTCTCCACATTCTTACC+GGG | + | tig0021468:35321-35340 | None:intergenic | 40.0% | |
| GTTCTTCTCCACATTCTTAC+CGG | + | tig0021468:35322-35341 | None:intergenic | 40.0% | |
| GGAGAAGAACCAAAACAGAA+TGG | - | tig0021468:35332-35351 | Msa1391940:CDS | 40.0% | |
| ! | TAGGTGGAACCATTCTGTTT+TGG | + | tig0021468:35344-35363 | None:intergenic | 40.0% |
| TCCACCTACTCAAAACTAAG+CGG | - | tig0021468:35356-35375 | Msa1391940:CDS | 40.0% | |
| CAACTGTTGTTGCAAAAACC+GGG | + | tig0021468:35404-35423 | None:intergenic | 40.0% | |
| GCAACTGTTGTTGCAAAAAC+CGG | + | tig0021468:35405-35424 | None:intergenic | 40.0% | |
| ! | GGATCCGAAAAAGTATGCTT+AGG | - | tig0021468:35469-35488 | Msa1391940:CDS | 40.0% |
| ATAGGACTTCTTGTTCGAGT+AGG | + | tig0021468:35592-35611 | None:intergenic | 40.0% | |
| ACTACCTACTCATTATTCGG+AGG | - | tig0021468:35711-35730 | Msa1391940:CDS | 40.0% | |
| TTCACCTCCGAATAATGAGT+AGG | + | tig0021468:35718-35737 | None:intergenic | 40.0% | |
| ! | CCATAAAATACCACCGCTTT+TGG | + | tig0021468:35751-35770 | None:intergenic | 40.0% |
| ! | CCAAAAGCGGTGGTATTTTA+TGG | - | tig0021468:35748-35767 | Msa1391940:CDS | 40.0% |
| AAGATCCAAACCTTCCTCTT+CGG | - | tig0021468:35809-35828 | Msa1391940:CDS | 40.0% | |
| TCCTCAATCTTCGGAGAATG+CGG | + | tig0021468:34883-34902 | None:intergenic | 45.0% | |
| !! | CGAAAGTTGCCCCTTTTTCA+TGG | - | tig0021468:34977-34996 | Msa1391940:CDS | 45.0% |
| TCACGAAAATGGAGACGAAC+CGG | + | tig0021468:35094-35113 | None:intergenic | 45.0% | |
| GAATCCGCGGTGAAGAAATA+AGG | - | tig0021468:35239-35258 | Msa1391940:CDS | 45.0% | |
| AGGAAAATTCCTGGATCACC+CGG | - | tig0021468:35300-35319 | Msa1391940:CDS | 45.0% | |
| CCACCTACTCAAAACTAAGC+GGG | - | tig0021468:35357-35376 | Msa1391940:CDS | 45.0% | |
| CACCTACTCAAAACTAAGCG+GGG | - | tig0021468:35358-35377 | Msa1391940:CDS | 45.0% | |
| !!! | ATCCCCGCTTAGTTTTGAGT+AGG | + | tig0021468:35363-35382 | None:intergenic | 45.0% |
| !! | ACCGGGATTTTAGTAGTAGG+CGG | + | tig0021468:35387-35406 | None:intergenic | 45.0% |
| CTGAGCACAACAGAATGAAG+AGG | - | tig0021468:35503-35522 | Msa1391940:CDS | 45.0% | |
| AGTAAACTTATGGGGGGATG+AGG | + | tig0021468:35656-35675 | None:intergenic | 45.0% | |
| TCATAGAACACCAAAAGCGG+TGG | - | tig0021468:35738-35757 | Msa1391940:CDS | 45.0% | |
| TGAGGGATGTGACCTATGTT+AGG | + | tig0021468:35775-35794 | None:intergenic | 45.0% | |
| TCCTCAATCTTCGGAGAATG+CGG | + | tig0021468:34883-34902 | None:intergenic | 45.0% | |
| !! | CGAAAGTTGCCCCTTTTTCA+TGG | - | tig0021468:34977-34996 | Msa1391940:CDS | 45.0% |
| TCACGAAAATGGAGACGAAC+CGG | + | tig0021468:35094-35113 | None:intergenic | 45.0% | |
| GAATCCGCGGTGAAGAAATA+AGG | - | tig0021468:35239-35258 | Msa1391940:CDS | 45.0% | |
| AGGAAAATTCCTGGATCACC+CGG | - | tig0021468:35300-35319 | Msa1391940:CDS | 45.0% | |
| CCACCTACTCAAAACTAAGC+GGG | - | tig0021468:35357-35376 | Msa1391940:CDS | 45.0% | |
| CACCTACTCAAAACTAAGCG+GGG | - | tig0021468:35358-35377 | Msa1391940:CDS | 45.0% | |
| !!! | ATCCCCGCTTAGTTTTGAGT+AGG | + | tig0021468:35363-35382 | None:intergenic | 45.0% |
| !! | ACCGGGATTTTAGTAGTAGG+CGG | + | tig0021468:35387-35406 | None:intergenic | 45.0% |
| CTGAGCACAACAGAATGAAG+AGG | - | tig0021468:35503-35522 | Msa1391940:CDS | 45.0% | |
| AGTAAACTTATGGGGGGATG+AGG | + | tig0021468:35656-35675 | None:intergenic | 45.0% | |
| TCATAGAACACCAAAAGCGG+TGG | - | tig0021468:35738-35757 | Msa1391940:CDS | 45.0% | |
| TGAGGGATGTGACCTATGTT+AGG | + | tig0021468:35775-35794 | None:intergenic | 45.0% | |
| CCTCTGTGCATCTCTGTGAT+GGG | + | tig0021468:35010-35029 | None:intergenic | 50.0% | |
| TCCTCTGTGCATCTCTGTGA+TGG | + | tig0021468:35011-35030 | None:intergenic | 50.0% | |
| GCAGCCGATAAGTCATCGAA+GGG | - | tig0021468:35132-35151 | Msa1391940:CDS | 50.0% | |
| GAAAATGACGCGAGAATCCG+CGG | - | tig0021468:35226-35245 | Msa1391940:CDS | 50.0% | |
| ACATTCTTACCGGGTGATCC+AGG | + | tig0021468:35312-35331 | None:intergenic | 50.0% | |
| TGGATCACCCGGTAAGAATG+TGG | - | tig0021468:35311-35330 | Msa1391940:CDS | 50.0% | |
| !!! | CCCGCTTAGTTTTGAGTAGG+TGG | + | tig0021468:35360-35379 | None:intergenic | 50.0% |
| GCCGCCTACTACTAAAATCC+CGG | - | tig0021468:35383-35402 | Msa1391940:CDS | 50.0% | |
| CATTCTGTTGTGCTCAGCGA+AGG | + | tig0021468:35500-35519 | None:intergenic | 50.0% | |
| CCTCTGTGCATCTCTGTGAT+GGG | + | tig0021468:35010-35029 | None:intergenic | 50.0% | |
| TCCTCTGTGCATCTCTGTGA+TGG | + | tig0021468:35011-35030 | None:intergenic | 50.0% | |
| GCAGCCGATAAGTCATCGAA+GGG | - | tig0021468:35132-35151 | Msa1391940:CDS | 50.0% | |
| GAAAATGACGCGAGAATCCG+CGG | - | tig0021468:35226-35245 | Msa1391940:CDS | 50.0% | |
| ACATTCTTACCGGGTGATCC+AGG | + | tig0021468:35312-35331 | None:intergenic | 50.0% | |
| TGGATCACCCGGTAAGAATG+TGG | - | tig0021468:35311-35330 | Msa1391940:CDS | 50.0% | |
| !!! | CCCGCTTAGTTTTGAGTAGG+TGG | + | tig0021468:35360-35379 | None:intergenic | 50.0% |
| GCCGCCTACTACTAAAATCC+CGG | - | tig0021468:35383-35402 | Msa1391940:CDS | 50.0% | |
| CATTCTGTTGTGCTCAGCGA+AGG | + | tig0021468:35500-35519 | None:intergenic | 50.0% | |
| GCCGCATTCTCCGAAGATTG+AGG | - | tig0021468:34879-34898 | Msa1391940:CDS | 55.0% | |
| CCCATCACAGAGATGCACAG+AGG | - | tig0021468:35007-35026 | Msa1391940:CDS | 55.0% | |
| ! | CTTATCGGCTGCCTTGCTTG+AGG | + | tig0021468:35124-35143 | None:intergenic | 55.0% |
| GGCAGCCGATAAGTCATCGA+AGG | - | tig0021468:35131-35150 | Msa1391940:CDS | 55.0% | |
| ATGGGGGGATGAGGAGCAAT+AGG | + | tig0021468:35647-35666 | None:intergenic | 55.0% | |
| CCAAACCTTCCTCTTCGGAG+CGG | - | tig0021468:35814-35833 | Msa1391940:CDS | 55.0% | |
| CTTCCTCTTCGGAGCGGAAA+CGG | - | tig0021468:35820-35839 | Msa1391940:CDS | 55.0% | |
| GCCGCATTCTCCGAAGATTG+AGG | - | tig0021468:34879-34898 | Msa1391940:CDS | 55.0% | |
| CCCATCACAGAGATGCACAG+AGG | - | tig0021468:35007-35026 | Msa1391940:CDS | 55.0% | |
| ! | CTTATCGGCTGCCTTGCTTG+AGG | + | tig0021468:35124-35143 | None:intergenic | 55.0% |
| GGCAGCCGATAAGTCATCGA+AGG | - | tig0021468:35131-35150 | Msa1391940:CDS | 55.0% | |
| ATGGGGGGATGAGGAGCAAT+AGG | + | tig0021468:35647-35666 | None:intergenic | 55.0% | |
| CCAAACCTTCCTCTTCGGAG+CGG | - | tig0021468:35814-35833 | Msa1391940:CDS | 55.0% | |
| CTTCCTCTTCGGAGCGGAAA+CGG | - | tig0021468:35820-35839 | Msa1391940:CDS | 55.0% | |
| CCGCTCCGAAGAGGAAGGTT+TGG | + | tig0021468:35817-35836 | None:intergenic | 60.0% | |
| CGTTTCCGCTCCGAAGAGGA+AGG | + | tig0021468:35822-35841 | None:intergenic | 60.0% | |
| CCGCTCCGAAGAGGAAGGTT+TGG | + | tig0021468:35817-35836 | None:intergenic | 60.0% | |
| CGTTTCCGCTCCGAAGAGGA+AGG | + | tig0021468:35822-35841 | None:intergenic | 60.0% | |
| CGTCCGTTTCCGCTCCGAAG+AGG | + | tig0021468:35826-35845 | None:intergenic | 65.0% | |
| CTTCGGAGCGGAAACGGACG+TGG | - | tig0021468:35826-35845 | Msa1391940:CDS | 65.0% | |
| CGTCCGTTTCCGCTCCGAAG+AGG | + | tig0021468:35826-35845 | None:intergenic | 65.0% | |
| CTTCGGAGCGGAAACGGACG+TGG | - | tig0021468:35826-35845 | Msa1391940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021468 | gene | 34812 | 35861 | 34812 | ID=Msa1391940;Name=Msa1391940 |
| tig0021468 | mRNA | 34812 | 35861 | 34812 | ID=Msa1391940-mRNA-1;Parent=Msa1391940;Name=Msa1391940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|349 |
| tig0021468 | exon | 34812 | 35861 | 34812 | ID=Msa1391940-mRNA-1:exon:12949;Parent=Msa1391940-mRNA-1 |
| tig0021468 | CDS | 34812 | 35861 | 34812 | ID=Msa1391940-mRNA-1:cds;Parent=Msa1391940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
