Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453840 | sp|Q31708|RT04_ARATH | 82.102 | 352 | 54 | 5 | 1 | 349 | 17 | 362 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453840 | A0A072TH07 | 100.000 | 349 | 0 | 0 | 1 | 349 | 1 | 349 | 0.0 | 710 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069510 | Msa1453840 | 0.819506 | 1.120775e-52 | -8.615850e-47 |
| Msa1391940 | Msa1453840 | 0.984038 | 2.060195e-159 | -8.615850e-47 |
| Msa1391960 | Msa1453840 | 0.831232 | 1.876082e-55 | -8.615850e-47 |
| Msa0983360 | Msa1453840 | 0.823019 | 1.734861e-53 | -8.615850e-47 |
| Msa0919990 | Msa1453840 | 0.807488 | 4.933238e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453840 | MtrunA17_MTg0491671 | 100.000 | 349 | 0 | 0 | 1 | 349 | 1 | 349 | 0.0 | 710 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453840 | ATMG00290.1 | 84.943 | 352 | 44 | 5 | 1 | 349 | 17 | 362 | 0.0 | 533 |
| Msa1453840 | AT2G07734.1 | 84.943 | 352 | 44 | 5 | 1 | 349 | 17 | 362 | 0.0 | 533 |
Find 72 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACGTCCGATCTTGTTTC+TGG | 0.154996 | tig0034911:+21205 | None:intergenic |
| TTCTCTTCATAGTAAACTTA+TGG | 0.166150 | tig0034911:+20609 | None:intergenic |
| AAAACTTGTCGTCTACTTTC+AGG | 0.216989 | tig0034911:-21451 | Msa1453840:CDS |
| GAGGAATAGTTTCACGAAAA+TGG | 0.254003 | tig0034911:+21170 | None:intergenic |
| ACGCGGATCTTTATATGTTT+TGG | 0.279472 | tig0034911:+20423 | None:intergenic |
| CCATAAAATACCACCGCTTT+TGG | 0.281425 | tig0034911:+20524 | None:intergenic |
| TTTGAAAGAACAAAGAAGTT+TGG | 0.285807 | tig0034911:-20824 | Msa1453840:CDS |
| GTTCTTCTCCACATTCTTAC+CGG | 0.286315 | tig0034911:+20953 | None:intergenic |
| AACAAGATCGGACGTTATTC+CGG | 0.309578 | tig0034911:-21200 | Msa1453840:CDS |
| TCTTCTCTTCGATAAGAATA+GGG | 0.348985 | tig0034911:+20727 | None:intergenic |
| CAAACCCTTCGATGACTTAT+CGG | 0.352144 | tig0034911:+21136 | None:intergenic |
| TCTCTTCATAGTAAACTTAT+GGG | 0.361733 | tig0034911:+20610 | None:intergenic |
| CCGCTCCGAAGAGGAAGGTT+TGG | 0.362903 | tig0034911:+20458 | None:intergenic |
| CGAACTACCTACTCATTATT+CGG | 0.374771 | tig0034911:-20564 | Msa1453840:CDS |
| TCTTCTTGTTCCTCAATCTT+CGG | 0.379001 | tig0034911:+21383 | None:intergenic |
| GAATCCGCGGTGAAGAAATA+AGG | 0.383183 | tig0034911:-21033 | Msa1453840:CDS |
| TAGGTGGAACCATTCTGTTT+TGG | 0.386834 | tig0034911:+20931 | None:intergenic |
| TGGGTAAATCCCCATGAAAA+AGG | 0.391419 | tig0034911:+21284 | None:intergenic |
| TTCTTCTCTTCGATAAGAAT+AGG | 0.401656 | tig0034911:+20726 | None:intergenic |
| GTTTCTGGATTGAGTAGAAA+AGG | 0.411543 | tig0034911:+21220 | None:intergenic |
| TTGTTCGAGTAGGAAGATAT+CGG | 0.417257 | tig0034911:+20693 | None:intergenic |
| TCCTCTGTGCATCTCTGTGA+TGG | 0.419702 | tig0034911:+21264 | None:intergenic |
| AAAGAAGAGTTGTAAACTAT+AGG | 0.453297 | tig0034911:+20665 | None:intergenic |
| ACATTCTTACCGGGTGATCC+AGG | 0.465484 | tig0034911:+20963 | None:intergenic |
| ACTTTCGTGTAGTTTGTGAT+TGG | 0.473847 | tig0034911:+21311 | None:intergenic |
| AAGATCCAAACCTTCCTCTT+CGG | 0.476009 | tig0034911:-20463 | Msa1453840:CDS |
| GTCTACTTTCAGGAAATGTT+CGG | 0.476906 | tig0034911:-21441 | Msa1453840:CDS |
| TGAGGGATGTGACCTATGTT+AGG | 0.479008 | tig0034911:+20500 | None:intergenic |
| CTTCCTCTTCGGAGCGGAAA+CGG | 0.483656 | tig0034911:-20452 | Msa1453840:CDS |
| GAAGGAAGAGAAGAATCAAA+AGG | 0.500581 | tig0034911:-20589 | Msa1453840:CDS |
| TCACGAAAATGGAGACGAAC+CGG | 0.502616 | tig0034911:+21181 | None:intergenic |
| TTTCTGGATTGAGTAGAAAA+GGG | 0.504381 | tig0034911:+21221 | None:intergenic |
| CGTTTCCGCTCCGAAGAGGA+AGG | 0.512307 | tig0034911:+20453 | None:intergenic |
| TTCTTCTCCACATTCTTACC+GGG | 0.515532 | tig0034911:+20954 | None:intergenic |
| CCACCTACTCAAAACTAAGC+GGG | 0.517088 | tig0034911:-20915 | Msa1453840:CDS |
| CTTCGGAGCGGAAACGGACG+TGG | 0.519114 | tig0034911:-20446 | Msa1453840:CDS |
| CATTCTGTTGTGCTCAGCGA+AGG | 0.523997 | tig0034911:+20775 | None:intergenic |
| TCCTCAATCTTCGGAGAATG+CGG | 0.524037 | tig0034911:+21392 | None:intergenic |
| GCCGCATTCTCCGAAGATTG+AGG | 0.524279 | tig0034911:-21393 | Msa1453840:CDS |
| CCTCTGTGCATCTCTGTGAT+GGG | 0.548559 | tig0034911:+21265 | None:intergenic |
| AGGAAAATTCCTGGATCACC+CGG | 0.551944 | tig0034911:-20972 | Msa1453840:CDS |
| GCCGCCTACTACTAAAATCC+CGG | 0.555534 | tig0034911:-20889 | Msa1453840:CDS |
| CTCTTCATAGTAAACTTATG+GGG | 0.565331 | tig0034911:+20611 | None:intergenic |
| GAAAATGACGCGAGAATCCG+CGG | 0.565337 | tig0034911:-21046 | Msa1453840:CDS |
| ATAGGACTTCTTGTTCGAGT+AGG | 0.570822 | tig0034911:+20683 | None:intergenic |
| TCTTCATAGTAAACTTATGG+GGG | 0.571794 | tig0034911:+20612 | None:intergenic |
| GGCAGCCGATAAGTCATCGA+AGG | 0.579268 | tig0034911:-21141 | Msa1453840:CDS |
| TCTTTCAATCTTATGTCGTG+AGG | 0.582425 | tig0034911:+20482 | None:intergenic |
| CTTATCGGCTGCCTTGCTTG+AGG | 0.586187 | tig0034911:+21151 | None:intergenic |
| ATAAGTTTACTATGAAGAGA+AGG | 0.589517 | tig0034911:-20607 | Msa1453840:CDS |
| CGTCCGTTTCCGCTCCGAAG+AGG | 0.592480 | tig0034911:+20449 | None:intergenic |
| TGGATCACCCGGTAAGAATG+TGG | 0.593751 | tig0034911:-20961 | Msa1453840:CDS |
| CTTTCAATCTTATGTCGTGA+GGG | 0.596309 | tig0034911:+20483 | None:intergenic |
| GTGAAACTATTCCTCAAGCA+AGG | 0.600900 | tig0034911:-21162 | Msa1453840:CDS |
| AAAAGATATTAGATCACCGT+GGG | 0.612453 | tig0034911:+21072 | None:intergenic |
| GGAGAAGAACCAAAACAGAA+TGG | 0.614037 | tig0034911:-20940 | Msa1453840:CDS |
| GGTTTGTGTGAATAATCGAA+TGG | 0.625206 | tig0034911:-21119 | Msa1453840:CDS |
| CTGAGCACAACAGAATGAAG+AGG | 0.630350 | tig0034911:-20769 | Msa1453840:CDS |
| CACCTACTCAAAACTAAGCG+GGG | 0.643253 | tig0034911:-20914 | Msa1453840:CDS |
| GAATCATAGAACACCAAAAG+CGG | 0.646473 | tig0034911:-20537 | Msa1453840:CDS |
| ACTCAATCCAGAAACAAGAT+CGG | 0.651613 | tig0034911:-21212 | Msa1453840:CDS |
| ACTCGTTTGAAAGTTTCCCA+CGG | 0.653886 | tig0034911:-21088 | Msa1453840:CDS |
| CTTCATAGTAAACTTATGGG+GGG | 0.657996 | tig0034911:+20613 | None:intergenic |
| ACTACCTACTCATTATTCGG+AGG | 0.659920 | tig0034911:-20561 | Msa1453840:CDS |
| TCATAGAACACCAAAAGCGG+TGG | 0.663620 | tig0034911:-20534 | Msa1453840:CDS |
| GCAGCCGATAAGTCATCGAA+GGG | 0.664381 | tig0034911:-21140 | Msa1453840:CDS |
| TCCACCTACTCAAAACTAAG+CGG | 0.674271 | tig0034911:-20916 | Msa1453840:CDS |
| ATCTCCTTATTTCTTCACCG+CGG | 0.682529 | tig0034911:+21029 | None:intergenic |
| CCAAACCTTCCTCTTCGGAG+CGG | 0.683868 | tig0034911:-20458 | Msa1453840:CDS |
| GAAAAGATATTAGATCACCG+TGG | 0.696122 | tig0034911:+21071 | None:intergenic |
| TTCACCTCCGAATAATGAGT+AGG | 0.702507 | tig0034911:+20557 | None:intergenic |
| CCCATCACAGAGATGCACAG+AGG | 0.749745 | tig0034911:-21265 | Msa1453840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCAGTTGAAAAAATCAT+AGG | - | tig0034911:20901-20920 | Msa1453840:CDS | 20.0% |
| !! | ATATCAGTTGAAAAAATCAT+AGG | - | tig0034911:20901-20920 | Msa1453840:CDS | 20.0% |
| !! | TAACTGTTAAGATTTTCTCT+CGG | + | tig0034911:20559-20578 | None:intergenic | 25.0% |
| ! | AAAAATCATAGGAAAATTCC+TGG | - | tig0034911:20912-20931 | Msa1453840:CDS | 25.0% |
| ! | TTTGAAAGAACAAAGAAGTT+TGG | - | tig0034911:21069-21088 | Msa1453840:CDS | 25.0% |
| ! | AAAGAAGAGTTGTAAACTAT+AGG | + | tig0034911:21231-21250 | None:intergenic | 25.0% |
| ! | TCTCTTCATAGTAAACTTAT+GGG | + | tig0034911:21286-21305 | None:intergenic | 25.0% |
| ! | TTCTCTTCATAGTAAACTTA+TGG | + | tig0034911:21287-21306 | None:intergenic | 25.0% |
| ! | ATAAGTTTACTATGAAGAGA+AGG | - | tig0034911:21286-21305 | Msa1453840:CDS | 25.0% |
| !! | TAACTGTTAAGATTTTCTCT+CGG | + | tig0034911:20559-20578 | None:intergenic | 25.0% |
| ! | AAAAATCATAGGAAAATTCC+TGG | - | tig0034911:20912-20931 | Msa1453840:CDS | 25.0% |
| ! | TTTGAAAGAACAAAGAAGTT+TGG | - | tig0034911:21069-21088 | Msa1453840:CDS | 25.0% |
| ! | AAAGAAGAGTTGTAAACTAT+AGG | + | tig0034911:21231-21250 | None:intergenic | 25.0% |
| ! | TCTCTTCATAGTAAACTTAT+GGG | + | tig0034911:21286-21305 | None:intergenic | 25.0% |
| ! | TTCTCTTCATAGTAAACTTA+TGG | + | tig0034911:21287-21306 | None:intergenic | 25.0% |
| ! | ATAAGTTTACTATGAAGAGA+AGG | - | tig0034911:21286-21305 | Msa1453840:CDS | 25.0% |
| TTTCTGGATTGAGTAGAAAA+GGG | + | tig0034911:20675-20694 | None:intergenic | 30.0% | |
| AAAAGATATTAGATCACCGT+GGG | + | tig0034911:20824-20843 | None:intergenic | 30.0% | |
| TCTTCTCTTCGATAAGAATA+GGG | + | tig0034911:21169-21188 | None:intergenic | 30.0% | |
| TTCTTCTCTTCGATAAGAAT+AGG | + | tig0034911:21170-21189 | None:intergenic | 30.0% | |
| TCTTCATAGTAAACTTATGG+GGG | + | tig0034911:21284-21303 | None:intergenic | 30.0% | |
| CTCTTCATAGTAAACTTATG+GGG | + | tig0034911:21285-21304 | None:intergenic | 30.0% | |
| ! | GTATTTTATGGACCTAACAT+AGG | - | tig0034911:21381-21400 | Msa1453840:CDS | 30.0% |
| TTTCTGGATTGAGTAGAAAA+GGG | + | tig0034911:20675-20694 | None:intergenic | 30.0% | |
| AAAAGATATTAGATCACCGT+GGG | + | tig0034911:20824-20843 | None:intergenic | 30.0% | |
| TCTTCTCTTCGATAAGAATA+GGG | + | tig0034911:21169-21188 | None:intergenic | 30.0% | |
| TTCTTCTCTTCGATAAGAAT+AGG | + | tig0034911:21170-21189 | None:intergenic | 30.0% | |
| TCTTCATAGTAAACTTATGG+GGG | + | tig0034911:21284-21303 | None:intergenic | 30.0% | |
| CTCTTCATAGTAAACTTATG+GGG | + | tig0034911:21285-21304 | None:intergenic | 30.0% | |
| ! | GTATTTTATGGACCTAACAT+AGG | - | tig0034911:21381-21400 | Msa1453840:CDS | 30.0% |
| AAAACTTGTCGTCTACTTTC+AGG | - | tig0034911:20442-20461 | Msa1453840:CDS | 35.0% | |
| GTCTACTTTCAGGAAATGTT+CGG | - | tig0034911:20452-20471 | Msa1453840:CDS | 35.0% | |
| TCTTCTTGTTCCTCAATCTT+CGG | + | tig0034911:20513-20532 | None:intergenic | 35.0% | |
| ! | ACTTTCGTGTAGTTTGTGAT+TGG | + | tig0034911:20585-20604 | None:intergenic | 35.0% |
| ! | GTTTCTGGATTGAGTAGAAA+AGG | + | tig0034911:20676-20695 | None:intergenic | 35.0% |
| ACTCAATCCAGAAACAAGAT+CGG | - | tig0034911:20681-20700 | Msa1453840:CDS | 35.0% | |
| GAGGAATAGTTTCACGAAAA+TGG | + | tig0034911:20726-20745 | None:intergenic | 35.0% | |
| GGTTTGTGTGAATAATCGAA+TGG | - | tig0034911:20774-20793 | Msa1453840:CDS | 35.0% | |
| GAAAAGATATTAGATCACCG+TGG | + | tig0034911:20825-20844 | None:intergenic | 35.0% | |
| !! | AAAACCGGGATTTTAGTAGT+AGG | + | tig0034911:21011-21030 | None:intergenic | 35.0% |
| !! | ACTGCCTAAGCATACTTTTT+CGG | + | tig0034911:21097-21116 | None:intergenic | 35.0% |
| TTGTTCGAGTAGGAAGATAT+CGG | + | tig0034911:21203-21222 | None:intergenic | 35.0% | |
| CTTCATAGTAAACTTATGGG+GGG | + | tig0034911:21283-21302 | None:intergenic | 35.0% | |
| GAAGGAAGAGAAGAATCAAA+AGG | - | tig0034911:21304-21323 | Msa1453840:CDS | 35.0% | |
| CGAACTACCTACTCATTATT+CGG | - | tig0034911:21329-21348 | Msa1453840:CDS | 35.0% | |
| GAATCATAGAACACCAAAAG+CGG | - | tig0034911:21356-21375 | Msa1453840:CDS | 35.0% | |
| CTTTCAATCTTATGTCGTGA+GGG | + | tig0034911:21413-21432 | None:intergenic | 35.0% | |
| TCTTTCAATCTTATGTCGTG+AGG | + | tig0034911:21414-21433 | None:intergenic | 35.0% | |
| AAAACTTGTCGTCTACTTTC+AGG | - | tig0034911:20442-20461 | Msa1453840:CDS | 35.0% | |
| GTCTACTTTCAGGAAATGTT+CGG | - | tig0034911:20452-20471 | Msa1453840:CDS | 35.0% | |
| TCTTCTTGTTCCTCAATCTT+CGG | + | tig0034911:20513-20532 | None:intergenic | 35.0% | |
| ! | ACTTTCGTGTAGTTTGTGAT+TGG | + | tig0034911:20585-20604 | None:intergenic | 35.0% |
| ! | GTTTCTGGATTGAGTAGAAA+AGG | + | tig0034911:20676-20695 | None:intergenic | 35.0% |
| ACTCAATCCAGAAACAAGAT+CGG | - | tig0034911:20681-20700 | Msa1453840:CDS | 35.0% | |
| GAGGAATAGTTTCACGAAAA+TGG | + | tig0034911:20726-20745 | None:intergenic | 35.0% | |
| GGTTTGTGTGAATAATCGAA+TGG | - | tig0034911:20774-20793 | Msa1453840:CDS | 35.0% | |
| GAAAAGATATTAGATCACCG+TGG | + | tig0034911:20825-20844 | None:intergenic | 35.0% | |
| !! | AAAACCGGGATTTTAGTAGT+AGG | + | tig0034911:21011-21030 | None:intergenic | 35.0% |
| !! | ACTGCCTAAGCATACTTTTT+CGG | + | tig0034911:21097-21116 | None:intergenic | 35.0% |
| TTGTTCGAGTAGGAAGATAT+CGG | + | tig0034911:21203-21222 | None:intergenic | 35.0% | |
| CTTCATAGTAAACTTATGGG+GGG | + | tig0034911:21283-21302 | None:intergenic | 35.0% | |
| GAAGGAAGAGAAGAATCAAA+AGG | - | tig0034911:21304-21323 | Msa1453840:CDS | 35.0% | |
| CGAACTACCTACTCATTATT+CGG | - | tig0034911:21329-21348 | Msa1453840:CDS | 35.0% | |
| GAATCATAGAACACCAAAAG+CGG | - | tig0034911:21356-21375 | Msa1453840:CDS | 35.0% | |
| CTTTCAATCTTATGTCGTGA+GGG | + | tig0034911:21413-21432 | None:intergenic | 35.0% | |
| TCTTTCAATCTTATGTCGTG+AGG | + | tig0034911:21414-21433 | None:intergenic | 35.0% | |
| !! | GAAAGTTGCCCCTTTTTCAT+GGG | - | tig0034911:20599-20618 | Msa1453840:CDS | 40.0% |
| !! | AAAGTTGCCCCTTTTTCATG+GGG | - | tig0034911:20600-20619 | Msa1453840:CDS | 40.0% |
| GGTAAATCCCCATGAAAAAG+GGG | + | tig0034911:20610-20629 | None:intergenic | 40.0% | |
| GGGTAAATCCCCATGAAAAA+GGG | + | tig0034911:20611-20630 | None:intergenic | 40.0% | |
| TGGGTAAATCCCCATGAAAA+AGG | + | tig0034911:20612-20631 | None:intergenic | 40.0% | |
| ! | ATAACGTCCGATCTTGTTTC+TGG | + | tig0034911:20691-20710 | None:intergenic | 40.0% |
| AACAAGATCGGACGTTATTC+CGG | - | tig0034911:20693-20712 | Msa1453840:CDS | 40.0% | |
| GTGAAACTATTCCTCAAGCA+AGG | - | tig0034911:20731-20750 | Msa1453840:CDS | 40.0% | |
| CAAACCCTTCGATGACTTAT+CGG | + | tig0034911:20760-20779 | None:intergenic | 40.0% | |
| ACTCGTTTGAAAGTTTCCCA+CGG | - | tig0034911:20805-20824 | Msa1453840:CDS | 40.0% | |
| ! | ATCTCCTTATTTCTTCACCG+CGG | + | tig0034911:20867-20886 | None:intergenic | 40.0% |
| TTCTTCTCCACATTCTTACC+GGG | + | tig0034911:20942-20961 | None:intergenic | 40.0% | |
| GTTCTTCTCCACATTCTTAC+CGG | + | tig0034911:20943-20962 | None:intergenic | 40.0% | |
| GGAGAAGAACCAAAACAGAA+TGG | - | tig0034911:20953-20972 | Msa1453840:CDS | 40.0% | |
| ! | TAGGTGGAACCATTCTGTTT+TGG | + | tig0034911:20965-20984 | None:intergenic | 40.0% |
| TCCACCTACTCAAAACTAAG+CGG | - | tig0034911:20977-20996 | Msa1453840:CDS | 40.0% | |
| CAACTGTTGTTGCAAAAACC+GGG | + | tig0034911:21025-21044 | None:intergenic | 40.0% | |
| GCAACTGTTGTTGCAAAAAC+CGG | + | tig0034911:21026-21045 | None:intergenic | 40.0% | |
| ! | GGATCCGAAAAAGTATGCTT+AGG | - | tig0034911:21090-21109 | Msa1453840:CDS | 40.0% |
| ATAGGACTTCTTGTTCGAGT+AGG | + | tig0034911:21213-21232 | None:intergenic | 40.0% | |
| ACTACCTACTCATTATTCGG+AGG | - | tig0034911:21332-21351 | Msa1453840:CDS | 40.0% | |
| TTCACCTCCGAATAATGAGT+AGG | + | tig0034911:21339-21358 | None:intergenic | 40.0% | |
| ! | CCATAAAATACCACCGCTTT+TGG | + | tig0034911:21372-21391 | None:intergenic | 40.0% |
| ! | CCAAAAGCGGTGGTATTTTA+TGG | - | tig0034911:21369-21388 | Msa1453840:CDS | 40.0% |
| AAGATCCAAACCTTCCTCTT+CGG | - | tig0034911:21430-21449 | Msa1453840:CDS | 40.0% | |
| !! | GAAAGTTGCCCCTTTTTCAT+GGG | - | tig0034911:20599-20618 | Msa1453840:CDS | 40.0% |
| !! | AAAGTTGCCCCTTTTTCATG+GGG | - | tig0034911:20600-20619 | Msa1453840:CDS | 40.0% |
| GGTAAATCCCCATGAAAAAG+GGG | + | tig0034911:20610-20629 | None:intergenic | 40.0% | |
| GGGTAAATCCCCATGAAAAA+GGG | + | tig0034911:20611-20630 | None:intergenic | 40.0% | |
| TGGGTAAATCCCCATGAAAA+AGG | + | tig0034911:20612-20631 | None:intergenic | 40.0% | |
| ! | ATAACGTCCGATCTTGTTTC+TGG | + | tig0034911:20691-20710 | None:intergenic | 40.0% |
| AACAAGATCGGACGTTATTC+CGG | - | tig0034911:20693-20712 | Msa1453840:CDS | 40.0% | |
| GTGAAACTATTCCTCAAGCA+AGG | - | tig0034911:20731-20750 | Msa1453840:CDS | 40.0% | |
| CAAACCCTTCGATGACTTAT+CGG | + | tig0034911:20760-20779 | None:intergenic | 40.0% | |
| ACTCGTTTGAAAGTTTCCCA+CGG | - | tig0034911:20805-20824 | Msa1453840:CDS | 40.0% | |
| ! | ATCTCCTTATTTCTTCACCG+CGG | + | tig0034911:20867-20886 | None:intergenic | 40.0% |
| TTCTTCTCCACATTCTTACC+GGG | + | tig0034911:20942-20961 | None:intergenic | 40.0% | |
| GTTCTTCTCCACATTCTTAC+CGG | + | tig0034911:20943-20962 | None:intergenic | 40.0% | |
| GGAGAAGAACCAAAACAGAA+TGG | - | tig0034911:20953-20972 | Msa1453840:CDS | 40.0% | |
| ! | TAGGTGGAACCATTCTGTTT+TGG | + | tig0034911:20965-20984 | None:intergenic | 40.0% |
| TCCACCTACTCAAAACTAAG+CGG | - | tig0034911:20977-20996 | Msa1453840:CDS | 40.0% | |
| CAACTGTTGTTGCAAAAACC+GGG | + | tig0034911:21025-21044 | None:intergenic | 40.0% | |
| GCAACTGTTGTTGCAAAAAC+CGG | + | tig0034911:21026-21045 | None:intergenic | 40.0% | |
| ! | GGATCCGAAAAAGTATGCTT+AGG | - | tig0034911:21090-21109 | Msa1453840:CDS | 40.0% |
| ATAGGACTTCTTGTTCGAGT+AGG | + | tig0034911:21213-21232 | None:intergenic | 40.0% | |
| ACTACCTACTCATTATTCGG+AGG | - | tig0034911:21332-21351 | Msa1453840:CDS | 40.0% | |
| TTCACCTCCGAATAATGAGT+AGG | + | tig0034911:21339-21358 | None:intergenic | 40.0% | |
| ! | CCATAAAATACCACCGCTTT+TGG | + | tig0034911:21372-21391 | None:intergenic | 40.0% |
| ! | CCAAAAGCGGTGGTATTTTA+TGG | - | tig0034911:21369-21388 | Msa1453840:CDS | 40.0% |
| AAGATCCAAACCTTCCTCTT+CGG | - | tig0034911:21430-21449 | Msa1453840:CDS | 40.0% | |
| TCCTCAATCTTCGGAGAATG+CGG | + | tig0034911:20504-20523 | None:intergenic | 45.0% | |
| !! | CGAAAGTTGCCCCTTTTTCA+TGG | - | tig0034911:20598-20617 | Msa1453840:CDS | 45.0% |
| TCACGAAAATGGAGACGAAC+CGG | + | tig0034911:20715-20734 | None:intergenic | 45.0% | |
| GAATCCGCGGTGAAGAAATA+AGG | - | tig0034911:20860-20879 | Msa1453840:CDS | 45.0% | |
| AGGAAAATTCCTGGATCACC+CGG | - | tig0034911:20921-20940 | Msa1453840:CDS | 45.0% | |
| CCACCTACTCAAAACTAAGC+GGG | - | tig0034911:20978-20997 | Msa1453840:CDS | 45.0% | |
| CACCTACTCAAAACTAAGCG+GGG | - | tig0034911:20979-20998 | Msa1453840:CDS | 45.0% | |
| !!! | ATCCCCGCTTAGTTTTGAGT+AGG | + | tig0034911:20984-21003 | None:intergenic | 45.0% |
| !! | ACCGGGATTTTAGTAGTAGG+CGG | + | tig0034911:21008-21027 | None:intergenic | 45.0% |
| CTGAGCACAACAGAATGAAG+AGG | - | tig0034911:21124-21143 | Msa1453840:CDS | 45.0% | |
| AGTAAACTTATGGGGGGATG+AGG | + | tig0034911:21277-21296 | None:intergenic | 45.0% | |
| TCATAGAACACCAAAAGCGG+TGG | - | tig0034911:21359-21378 | Msa1453840:CDS | 45.0% | |
| TGAGGGATGTGACCTATGTT+AGG | + | tig0034911:21396-21415 | None:intergenic | 45.0% | |
| TCCTCAATCTTCGGAGAATG+CGG | + | tig0034911:20504-20523 | None:intergenic | 45.0% | |
| !! | CGAAAGTTGCCCCTTTTTCA+TGG | - | tig0034911:20598-20617 | Msa1453840:CDS | 45.0% |
| TCACGAAAATGGAGACGAAC+CGG | + | tig0034911:20715-20734 | None:intergenic | 45.0% | |
| GAATCCGCGGTGAAGAAATA+AGG | - | tig0034911:20860-20879 | Msa1453840:CDS | 45.0% | |
| AGGAAAATTCCTGGATCACC+CGG | - | tig0034911:20921-20940 | Msa1453840:CDS | 45.0% | |
| CCACCTACTCAAAACTAAGC+GGG | - | tig0034911:20978-20997 | Msa1453840:CDS | 45.0% | |
| CACCTACTCAAAACTAAGCG+GGG | - | tig0034911:20979-20998 | Msa1453840:CDS | 45.0% | |
| !!! | ATCCCCGCTTAGTTTTGAGT+AGG | + | tig0034911:20984-21003 | None:intergenic | 45.0% |
| !! | ACCGGGATTTTAGTAGTAGG+CGG | + | tig0034911:21008-21027 | None:intergenic | 45.0% |
| CTGAGCACAACAGAATGAAG+AGG | - | tig0034911:21124-21143 | Msa1453840:CDS | 45.0% | |
| AGTAAACTTATGGGGGGATG+AGG | + | tig0034911:21277-21296 | None:intergenic | 45.0% | |
| TCATAGAACACCAAAAGCGG+TGG | - | tig0034911:21359-21378 | Msa1453840:CDS | 45.0% | |
| TGAGGGATGTGACCTATGTT+AGG | + | tig0034911:21396-21415 | None:intergenic | 45.0% | |
| CCTCTGTGCATCTCTGTGAT+GGG | + | tig0034911:20631-20650 | None:intergenic | 50.0% | |
| TCCTCTGTGCATCTCTGTGA+TGG | + | tig0034911:20632-20651 | None:intergenic | 50.0% | |
| GCAGCCGATAAGTCATCGAA+GGG | - | tig0034911:20753-20772 | Msa1453840:CDS | 50.0% | |
| GAAAATGACGCGAGAATCCG+CGG | - | tig0034911:20847-20866 | Msa1453840:CDS | 50.0% | |
| ACATTCTTACCGGGTGATCC+AGG | + | tig0034911:20933-20952 | None:intergenic | 50.0% | |
| TGGATCACCCGGTAAGAATG+TGG | - | tig0034911:20932-20951 | Msa1453840:CDS | 50.0% | |
| !!! | CCCGCTTAGTTTTGAGTAGG+TGG | + | tig0034911:20981-21000 | None:intergenic | 50.0% |
| GCCGCCTACTACTAAAATCC+CGG | - | tig0034911:21004-21023 | Msa1453840:CDS | 50.0% | |
| CATTCTGTTGTGCTCAGCGA+AGG | + | tig0034911:21121-21140 | None:intergenic | 50.0% | |
| CCTCTGTGCATCTCTGTGAT+GGG | + | tig0034911:20631-20650 | None:intergenic | 50.0% | |
| TCCTCTGTGCATCTCTGTGA+TGG | + | tig0034911:20632-20651 | None:intergenic | 50.0% | |
| GCAGCCGATAAGTCATCGAA+GGG | - | tig0034911:20753-20772 | Msa1453840:CDS | 50.0% | |
| GAAAATGACGCGAGAATCCG+CGG | - | tig0034911:20847-20866 | Msa1453840:CDS | 50.0% | |
| ACATTCTTACCGGGTGATCC+AGG | + | tig0034911:20933-20952 | None:intergenic | 50.0% | |
| TGGATCACCCGGTAAGAATG+TGG | - | tig0034911:20932-20951 | Msa1453840:CDS | 50.0% | |
| !!! | CCCGCTTAGTTTTGAGTAGG+TGG | + | tig0034911:20981-21000 | None:intergenic | 50.0% |
| GCCGCCTACTACTAAAATCC+CGG | - | tig0034911:21004-21023 | Msa1453840:CDS | 50.0% | |
| CATTCTGTTGTGCTCAGCGA+AGG | + | tig0034911:21121-21140 | None:intergenic | 50.0% | |
| GCCGCATTCTCCGAAGATTG+AGG | - | tig0034911:20500-20519 | Msa1453840:CDS | 55.0% | |
| CCCATCACAGAGATGCACAG+AGG | - | tig0034911:20628-20647 | Msa1453840:CDS | 55.0% | |
| ! | CTTATCGGCTGCCTTGCTTG+AGG | + | tig0034911:20745-20764 | None:intergenic | 55.0% |
| GGCAGCCGATAAGTCATCGA+AGG | - | tig0034911:20752-20771 | Msa1453840:CDS | 55.0% | |
| ATGGGGGGATGAGGAGCAAT+AGG | + | tig0034911:21268-21287 | None:intergenic | 55.0% | |
| CCAAACCTTCCTCTTCGGAG+CGG | - | tig0034911:21435-21454 | Msa1453840:CDS | 55.0% | |
| CTTCCTCTTCGGAGCGGAAA+CGG | - | tig0034911:21441-21460 | Msa1453840:CDS | 55.0% | |
| GCCGCATTCTCCGAAGATTG+AGG | - | tig0034911:20500-20519 | Msa1453840:CDS | 55.0% | |
| CCCATCACAGAGATGCACAG+AGG | - | tig0034911:20628-20647 | Msa1453840:CDS | 55.0% | |
| ! | CTTATCGGCTGCCTTGCTTG+AGG | + | tig0034911:20745-20764 | None:intergenic | 55.0% |
| GGCAGCCGATAAGTCATCGA+AGG | - | tig0034911:20752-20771 | Msa1453840:CDS | 55.0% | |
| ATGGGGGGATGAGGAGCAAT+AGG | + | tig0034911:21268-21287 | None:intergenic | 55.0% | |
| CCAAACCTTCCTCTTCGGAG+CGG | - | tig0034911:21435-21454 | Msa1453840:CDS | 55.0% | |
| CTTCCTCTTCGGAGCGGAAA+CGG | - | tig0034911:21441-21460 | Msa1453840:CDS | 55.0% | |
| CCGCTCCGAAGAGGAAGGTT+TGG | + | tig0034911:21438-21457 | None:intergenic | 60.0% | |
| CGTTTCCGCTCCGAAGAGGA+AGG | + | tig0034911:21443-21462 | None:intergenic | 60.0% | |
| CCGCTCCGAAGAGGAAGGTT+TGG | + | tig0034911:21438-21457 | None:intergenic | 60.0% | |
| CGTTTCCGCTCCGAAGAGGA+AGG | + | tig0034911:21443-21462 | None:intergenic | 60.0% | |
| CGTCCGTTTCCGCTCCGAAG+AGG | + | tig0034911:21447-21466 | None:intergenic | 65.0% | |
| CTTCGGAGCGGAAACGGACG+TGG | - | tig0034911:21447-21466 | Msa1453840:CDS | 65.0% | |
| CGTCCGTTTCCGCTCCGAAG+AGG | + | tig0034911:21447-21466 | None:intergenic | 65.0% | |
| CTTCGGAGCGGAAACGGACG+TGG | - | tig0034911:21447-21466 | Msa1453840:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0034911 | gene | 20433 | 21482 | 20433 | ID=Msa1453840;Name=Msa1453840 |
| tig0034911 | mRNA | 20433 | 21482 | 20433 | ID=Msa1453840-mRNA-1;Parent=Msa1453840;Name=Msa1453840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|349 |
| tig0034911 | exon | 20433 | 21482 | 20433 | ID=Msa1453840-mRNA-1:exon:19348;Parent=Msa1453840-mRNA-1 |
| tig0034911 | CDS | 20433 | 21482 | 20433 | ID=Msa1453840-mRNA-1:cds;Parent=Msa1453840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
