Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391960 | KEH16845.1 | 93.043 | 230 | 2 | 1 | 1 | 216 | 1 | 230 | 5.68e-151 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391960 | sp|P27062|NU3M_PANGI | 96.610 | 118 | 4 | 0 | 103 | 220 | 1 | 118 | 4.03e-77 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391960 | A0A072TTI0 | 93.043 | 230 | 2 | 1 | 1 | 216 | 1 | 230 | 2.71e-151 | 434 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069510 | Msa1391960 | 0.989729 | 2.178418e-179 | -8.615850e-47 |
| Msa0069520 | Msa1391960 | 0.932991 | 3.700332e-95 | -8.615850e-47 |
| Msa1391940 | Msa1391960 | 0.828337 | 9.506602e-55 | -8.615850e-47 |
| Msa1391950 | Msa1391960 | 0.868214 | 7.711384e-66 | -8.615850e-47 |
| Msa1391960 | Msa1392030 | 0.855024 | 8.325678e-62 | -8.615850e-47 |
| Msa1391960 | Msa1392120 | 0.831613 | 1.511481e-55 | -8.615850e-47 |
| Msa1391960 | Msa1392160 | 0.808604 | 2.854253e-50 | -8.615850e-47 |
| Msa1391960 | Msa1453840 | 0.831232 | 1.876082e-55 | -8.615850e-47 |
| Msa1391960 | Msa1453850 | 0.800146 | 1.652836e-48 | -8.615850e-47 |
| Msa0983190 | Msa1391960 | 0.815522 | 8.852980e-52 | -8.615850e-47 |
| Msa0983300 | Msa1391960 | 0.848433 | 6.148889e-60 | -8.615850e-47 |
| Msa0983360 | Msa1391960 | 0.990573 | 2.793665e-183 | -8.615850e-47 |
| Msa0983370 | Msa1391960 | 0.844825 | 5.946626e-59 | -8.615850e-47 |
| Msa0983460 | Msa1391960 | 0.843017 | 1.815036e-58 | -8.615850e-47 |
| Msa0983500 | Msa1391960 | 0.800838 | 1.194666e-48 | -8.615850e-47 |
| Msa0983520 | Msa1391960 | 0.815157 | 1.067686e-51 | -8.615850e-47 |
| Msa0908850 | Msa1391960 | 0.830897 | 2.266921e-55 | -8.615850e-47 |
| Msa0919980 | Msa1391960 | 0.900020 | 1.111461e-77 | -8.615850e-47 |
| Msa0919990 | Msa1391960 | 0.967571 | 1.840745e-127 | -8.615850e-47 |
| Msa0920060 | Msa1391960 | 0.834565 | 2.784427e-56 | -8.615850e-47 |
| Msa0944920 | Msa1391960 | 0.815155 | 1.068718e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391960 | MtrunA17_MTg0491651 | 100.000 | 118 | 0 | 0 | 103 | 220 | 1 | 118 | 1.10e-81 | 239 |
| Msa1391960 | MtrunA17_MTg0491641 | 100.000 | 50 | 0 | 0 | 1 | 50 | 1 | 50 | 6.03e-28 | 101 |
| Msa1391960 | MtrunA17_Chr2g0299771 | 55.000 | 100 | 32 | 2 | 120 | 216 | 78 | 167 | 8.95e-23 | 90.5 |
| Msa1391960 | MtrunA17_Chr4g0016401 | 33.613 | 119 | 66 | 2 | 100 | 218 | 13 | 118 | 2.73e-16 | 72.4 |
| Msa1391960 | MtrunA17_CPg0493371 | 33.613 | 119 | 66 | 2 | 100 | 218 | 13 | 118 | 2.73e-16 | 72.4 |
| Msa1391960 | MtrunA17_Chr7g0229351 | 33.613 | 119 | 66 | 2 | 100 | 218 | 13 | 118 | 2.73e-16 | 72.4 |
| Msa1391960 | MtrunA17_Chr7g0222081 | 32.773 | 119 | 67 | 2 | 100 | 218 | 13 | 118 | 5.28e-15 | 68.9 |
| Msa1391960 | MtrunA17_Chr7g0227441 | 31.092 | 119 | 69 | 1 | 100 | 218 | 9 | 114 | 7.59e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391960 | ATMG00990.1 | 90.756 | 119 | 11 | 0 | 102 | 220 | 1 | 119 | 1.92e-62 | 191 |
| Msa1391960 | AT2G07751.1 | 91.525 | 118 | 10 | 0 | 103 | 220 | 1 | 118 | 4.26e-62 | 189 |
| Msa1391960 | ATCG00440.1 | 39.506 | 81 | 49 | 0 | 138 | 218 | 38 | 118 | 6.10e-16 | 71.6 |
Find 63 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGGAATAATAAATAAAA+TGG | 0.240536 | tig0021468:+37168 | None:intergenic |
| AATCGTCAAAATCAATAAAA+AGG | 0.278470 | tig0021468:+37069 | None:intergenic |
| ATTCGCTTGCGACCACTTAC+TGG | 0.288643 | tig0021468:+37946 | None:intergenic |
| TCGTATATCGAAACGACTTC+TGG | 0.326735 | tig0021468:+37204 | None:intergenic |
| AGATTGATCCGTTTGGATCT+TGG | 0.332391 | tig0021468:-37102 | Msa1391960:CDS |
| TCATGATATTTCGACACATT+GGG | 0.368458 | tig0021468:+37469 | None:intergenic |
| ATCTCATAAGAGAAGGAAAT+GGG | 0.384650 | tig0021468:-37525 | Msa1391960:intron |
| GAATGTGGTTTCGATCCTTT+CGG | 0.394900 | tig0021468:-37232 | Msa1391960:CDS |
| CTAGTTTCTTTGATCTTACT+CGG | 0.398120 | tig0021468:-37313 | Msa1391960:CDS |
| ATCACTAAATAGATACAAAT+AGG | 0.398351 | tig0021468:+37343 | None:intergenic |
| ATTTCGACACATTGGGGCTA+TGG | 0.405887 | tig0021468:+37476 | None:intergenic |
| ATGCGATCTAACAGACTAAC+AGG | 0.406018 | tig0021468:-38043 | Msa1391960:CDS |
| GAAAAGGGGTGCTTCGGATC+GGG | 0.415555 | tig0021468:-37029 | Msa1391960:CDS |
| TTCTGGATAGGTCGAACTAT+TGG | 0.415821 | tig0021468:+37270 | None:intergenic |
| ATGTGTCGAAATATCATGAT+TGG | 0.419168 | tig0021468:-37465 | Msa1391960:CDS |
| TTTATTTATTATTCCTGATC+CGG | 0.424208 | tig0021468:-37164 | Msa1391960:CDS |
| GATCTCTCTATGAATGGAAA+AGG | 0.425269 | tig0021468:-37045 | Msa1391960:CDS |
| ATCTCTCTATGAATGGAAAA+GGG | 0.431570 | tig0021468:-37044 | Msa1391960:CDS |
| CCCAACAAGATTGATCCGTT+TGG | 0.440337 | tig0021468:-37109 | Msa1391960:CDS |
| GTTTGGATCTTGGTCTATGA+TGG | 0.450565 | tig0021468:-37092 | Msa1391960:CDS |
| GAAAAGGTGACTTCCGGATC+AGG | 0.450772 | tig0021468:+37151 | None:intergenic |
| GGTATGCCGCTCCGCGAGAA+TGG | 0.452469 | tig0021468:-37408 | Msa1391960:CDS |
| TCCAAACGGATCAATCTTGT+TGG | 0.468478 | tig0021468:+37108 | None:intergenic |
| GGAAAGGAAAAGGTGACTTC+CGG | 0.469009 | tig0021468:+37145 | None:intergenic |
| AATCTCATAAGAGAAGGAAA+TGG | 0.469684 | tig0021468:-37526 | Msa1391960:intron |
| ATCATGATATTTCGACACAT+TGG | 0.474146 | tig0021468:+37468 | None:intergenic |
| CGATTGGATCTCTCTATGAA+TGG | 0.474570 | tig0021468:-37051 | Msa1391960:CDS |
| TGAATGGAAAAGGGGTGCTT+CGG | 0.476805 | tig0021468:-37035 | Msa1391960:CDS |
| GCAAACAAGGGATAGGGATA+AGG | 0.477141 | tig0021468:-37978 | Msa1391960:CDS |
| TTTCGACACATTGGGGCTAT+GGG | 0.487488 | tig0021468:+37477 | None:intergenic |
| ATTCTCGCGGAGCGGCATAC+CGG | 0.489485 | tig0021468:+37410 | None:intergenic |
| AAATAAAGCAAACAAGGGAT+AGG | 0.490289 | tig0021468:-37985 | Msa1391960:CDS |
| ATGATTGGGTCGACCAGGCC+CGG | 0.504241 | tig0021468:-37450 | Msa1391960:CDS |
| GGAAAAGGGGTGCTTCGGAT+CGG | 0.510667 | tig0021468:-37030 | Msa1391960:CDS |
| CTATTGGAAGCAAAGGGAAA+AGG | 0.512885 | tig0021468:+37286 | None:intergenic |
| CCAAACGGATCAATCTTGTT+GGG | 0.514353 | tig0021468:+37109 | None:intergenic |
| TGTTAGTCTGTTAGATCGCA+TGG | 0.517397 | tig0021468:+38045 | None:intergenic |
| CGAAAGAACCAAGTGGTTTG+TGG | 0.519040 | tig0021468:-37383 | Msa1391960:CDS |
| TGTGTCGAAATATCATGATT+GGG | 0.525122 | tig0021468:-37464 | Msa1391960:CDS |
| CAAGGAAAATAAAGCAAACA+AGG | 0.529144 | tig0021468:-37991 | Msa1391960:CDS |
| GTCGAACTATTGGAAGCAAA+GGG | 0.530761 | tig0021468:+37280 | None:intergenic |
| AGGCAAGTCTTTCCAGTAAG+TGG | 0.534859 | tig0021468:-37958 | Msa1391960:CDS |
| GGTCGAACTATTGGAAGCAA+AGG | 0.536457 | tig0021468:+37279 | None:intergenic |
| AATAAAGCAAACAAGGGATA+GGG | 0.539946 | tig0021468:-37984 | Msa1391960:CDS |
| TGACATTACCACAAACCACT+TGG | 0.551237 | tig0021468:+37375 | None:intergenic |
| ATATCATGATTGGGTCGACC+AGG | 0.554356 | tig0021468:-37455 | Msa1391960:CDS |
| TACTGCCCAAGGAAAGGAAA+AGG | 0.558588 | tig0021468:+37135 | None:intergenic |
| ATCATAGACCAAGATCCAAA+CGG | 0.591408 | tig0021468:+37094 | None:intergenic |
| GGGAGGTACTGCCCAAGGAA+AGG | 0.597602 | tig0021468:+37129 | None:intergenic |
| AAATTGTCGGCCTACGAATG+TGG | 0.598215 | tig0021468:-37247 | Msa1391960:CDS |
| CATGATATTTCGACACATTG+GGG | 0.606924 | tig0021468:+37470 | None:intergenic |
| GTTCTTTCGCTCCATTCTCG+CGG | 0.608615 | tig0021468:+37397 | None:intergenic |
| TGGTCGCAAGCGAATGACCT+AGG | 0.611364 | tig0021468:-37938 | Msa1391960:CDS |
| CGACTTCTGGCATCACCGAA+AGG | 0.612340 | tig0021468:+37217 | None:intergenic |
| TTGTTGGGAGGTACTGCCCA+AGG | 0.618079 | tig0021468:+37124 | None:intergenic |
| TTCGCTCCATTCTCGCGGAG+CGG | 0.629055 | tig0021468:+37402 | None:intergenic |
| CTCATAAGAGAAGGAAATGG+GGG | 0.630592 | tig0021468:-37523 | Msa1391960:intron |
| AGGATCGAAACCACATTCGT+AGG | 0.642058 | tig0021468:+37237 | None:intergenic |
| TCTCTCTATGAATGGAAAAG+GGG | 0.644738 | tig0021468:-37043 | Msa1391960:CDS |
| TCTCATAAGAGAAGGAAATG+GGG | 0.646592 | tig0021468:-37524 | Msa1391960:intron |
| AAGGAAAATAAAGCAAACAA+GGG | 0.651484 | tig0021468:-37990 | Msa1391960:CDS |
| AACGGATCAATCTTGTTGGG+AGG | 0.657932 | tig0021468:+37112 | None:intergenic |
| AATGGAGCGAAAGAACCAAG+TGG | 0.751382 | tig0021468:-37390 | Msa1391960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAGGAATAATAAATAAAA+TGG | + | tig0021468:37902-37921 | None:intergenic | 15.0% |
| !! | ATCAGGAATAATAAATAAAA+TGG | + | tig0021468:37902-37921 | None:intergenic | 15.0% |
| !! | AAATAAAATCTCATAAGAGA+AGG | - | tig0021468:37535-37554 | Msa1391960:intron | 20.0% |
| !! | ATCACTAAATAGATACAAAT+AGG | + | tig0021468:37727-37746 | None:intergenic | 20.0% |
| !! | TTTATTTATTATTCCTGATC+CGG | - | tig0021468:37903-37922 | Msa1391960:intron | 20.0% |
| !! | AATCGTCAAAATCAATAAAA+AGG | + | tig0021468:38001-38020 | None:intergenic | 20.0% |
| !!! | TTTTTATTGATTTTGACGAT+TGG | - | tig0021468:38000-38019 | Msa1391960:CDS | 20.0% |
| !! | AAATAAAATCTCATAAGAGA+AGG | - | tig0021468:37535-37554 | Msa1391960:intron | 20.0% |
| !! | ATCACTAAATAGATACAAAT+AGG | + | tig0021468:37727-37746 | None:intergenic | 20.0% |
| !! | TTTATTTATTATTCCTGATC+CGG | - | tig0021468:37903-37922 | Msa1391960:intron | 20.0% |
| !! | AATCGTCAAAATCAATAAAA+AGG | + | tig0021468:38001-38020 | None:intergenic | 20.0% |
| !!! | TTTTTATTGATTTTGACGAT+TGG | - | tig0021468:38000-38019 | Msa1391960:CDS | 20.0% |
| ! | AAGGAAAATAAAGCAAACAA+GGG | - | tig0021468:37077-37096 | Msa1391960:CDS | 25.0% |
| !! | ATGTGAACTTCTTTTTAAAC+GGG | + | tig0021468:37161-37180 | None:intergenic | 25.0% |
| !! | CATGTGAACTTCTTTTTAAA+CGG | + | tig0021468:37162-37181 | None:intergenic | 25.0% |
| ! | AACTCTTTATAAGTCCAATT+AGG | + | tig0021468:37303-37322 | None:intergenic | 25.0% |
| ! | GAAAAAAAGAAAAAAGATCC+GGG | + | tig0021468:37638-37657 | None:intergenic | 25.0% |
| ! | GGAAAAAAAGAAAAAAGATC+CGG | + | tig0021468:37639-37658 | None:intergenic | 25.0% |
| !!! | GGATCTTTTTTCTTTTTTTC+CGG | - | tig0021468:37638-37657 | Msa1391960:intron | 25.0% |
| ! | AAGGAAAATAAAGCAAACAA+GGG | - | tig0021468:37077-37096 | Msa1391960:CDS | 25.0% |
| !! | ATGTGAACTTCTTTTTAAAC+GGG | + | tig0021468:37161-37180 | None:intergenic | 25.0% |
| !! | CATGTGAACTTCTTTTTAAA+CGG | + | tig0021468:37162-37181 | None:intergenic | 25.0% |
| ! | AACTCTTTATAAGTCCAATT+AGG | + | tig0021468:37303-37322 | None:intergenic | 25.0% |
| ! | GAAAAAAAGAAAAAAGATCC+GGG | + | tig0021468:37638-37657 | None:intergenic | 25.0% |
| ! | GGAAAAAAAGAAAAAAGATC+CGG | + | tig0021468:37639-37658 | None:intergenic | 25.0% |
| !!! | GGATCTTTTTTCTTTTTTTC+CGG | - | tig0021468:37638-37657 | Msa1391960:intron | 25.0% |
| !!! | AGTAGTTTTGAAAGGAAATC+TGG | - | tig0021468:37053-37072 | Msa1391960:CDS | 30.0% |
| CAAGGAAAATAAAGCAAACA+AGG | - | tig0021468:37076-37095 | Msa1391960:CDS | 30.0% | |
| AAATAAAGCAAACAAGGGAT+AGG | - | tig0021468:37082-37101 | Msa1391960:CDS | 30.0% | |
| AATAAAGCAAACAAGGGATA+GGG | - | tig0021468:37083-37102 | Msa1391960:CDS | 30.0% | |
| ! | TAAAGAGTTTTCAGTCACAA+AGG | - | tig0021468:37314-37333 | Msa1391960:CDS | 30.0% |
| ATTATTCCTTTCAAGCAAGA+AGG | - | tig0021468:37346-37365 | Msa1391960:CDS | 30.0% | |
| TGCAGATGAAATAAAGAAGA+AGG | - | tig0021468:37432-37451 | Msa1391960:CDS | 30.0% | |
| ! | TATATGAGGAGCTTTCTTTT+TGG | - | tig0021468:37489-37508 | Msa1391960:CDS | 30.0% |
| !! | AGCTTTCTTTTTGGTATGAA+AGG | - | tig0021468:37498-37517 | Msa1391960:CDS | 30.0% |
| AATCTCATAAGAGAAGGAAA+TGG | - | tig0021468:37541-37560 | Msa1391960:intron | 30.0% | |
| ATCTCATAAGAGAAGGAAAT+GGG | - | tig0021468:37542-37561 | Msa1391960:intron | 30.0% | |
| TCATGATATTTCGACACATT+GGG | + | tig0021468:37601-37620 | None:intergenic | 30.0% | |
| ATCATGATATTTCGACACAT+TGG | + | tig0021468:37602-37621 | None:intergenic | 30.0% | |
| ATGTGTCGAAATATCATGAT+TGG | - | tig0021468:37602-37621 | Msa1391960:intron | 30.0% | |
| TGTGTCGAAATATCATGATT+GGG | - | tig0021468:37603-37622 | Msa1391960:intron | 30.0% | |
| CTAGTTTCTTTGATCTTACT+CGG | - | tig0021468:37754-37773 | Msa1391960:intron | 30.0% | |
| ATCTCTCTATGAATGGAAAA+GGG | - | tig0021468:38023-38042 | Msa1391960:CDS | 30.0% | |
| !!! | AGTAGTTTTGAAAGGAAATC+TGG | - | tig0021468:37053-37072 | Msa1391960:CDS | 30.0% |
| CAAGGAAAATAAAGCAAACA+AGG | - | tig0021468:37076-37095 | Msa1391960:CDS | 30.0% | |
| AAATAAAGCAAACAAGGGAT+AGG | - | tig0021468:37082-37101 | Msa1391960:CDS | 30.0% | |
| AATAAAGCAAACAAGGGATA+GGG | - | tig0021468:37083-37102 | Msa1391960:CDS | 30.0% | |
| ! | TAAAGAGTTTTCAGTCACAA+AGG | - | tig0021468:37314-37333 | Msa1391960:CDS | 30.0% |
| ATTATTCCTTTCAAGCAAGA+AGG | - | tig0021468:37346-37365 | Msa1391960:CDS | 30.0% | |
| TGCAGATGAAATAAAGAAGA+AGG | - | tig0021468:37432-37451 | Msa1391960:CDS | 30.0% | |
| ! | TATATGAGGAGCTTTCTTTT+TGG | - | tig0021468:37489-37508 | Msa1391960:CDS | 30.0% |
| !! | AGCTTTCTTTTTGGTATGAA+AGG | - | tig0021468:37498-37517 | Msa1391960:CDS | 30.0% |
| AATCTCATAAGAGAAGGAAA+TGG | - | tig0021468:37541-37560 | Msa1391960:intron | 30.0% | |
| ATCTCATAAGAGAAGGAAAT+GGG | - | tig0021468:37542-37561 | Msa1391960:intron | 30.0% | |
| TCATGATATTTCGACACATT+GGG | + | tig0021468:37601-37620 | None:intergenic | 30.0% | |
| ATCATGATATTTCGACACAT+TGG | + | tig0021468:37602-37621 | None:intergenic | 30.0% | |
| ATGTGTCGAAATATCATGAT+TGG | - | tig0021468:37602-37621 | Msa1391960:intron | 30.0% | |
| TGTGTCGAAATATCATGATT+GGG | - | tig0021468:37603-37622 | Msa1391960:intron | 30.0% | |
| CTAGTTTCTTTGATCTTACT+CGG | - | tig0021468:37754-37773 | Msa1391960:intron | 30.0% | |
| ATCTCTCTATGAATGGAAAA+GGG | - | tig0021468:38023-38042 | Msa1391960:CDS | 30.0% | |
| !! | TTTTGAAAGGAAATCTGGCA+AGG | - | tig0021468:37058-37077 | Msa1391960:CDS | 35.0% |
| AAGTGTAAGCCATACTTTCT+TGG | + | tig0021468:37223-37242 | None:intergenic | 35.0% | |
| GCATTCTCTACTTCTATCAT+TGG | - | tig0021468:37458-37477 | Msa1391960:CDS | 35.0% | |
| TCTCATAAGAGAAGGAAATG+GGG | - | tig0021468:37543-37562 | Msa1391960:intron | 35.0% | |
| CATGATATTTCGACACATTG+GGG | + | tig0021468:37600-37619 | None:intergenic | 35.0% | |
| GACCTATCCAGAAAAATTGT+CGG | - | tig0021468:37807-37826 | Msa1391960:intron | 35.0% | |
| ATCATAGACCAAGATCCAAA+CGG | + | tig0021468:37976-37995 | None:intergenic | 35.0% | |
| GATCTCTCTATGAATGGAAA+AGG | - | tig0021468:38022-38041 | Msa1391960:CDS | 35.0% | |
| TCTCTCTATGAATGGAAAAG+GGG | - | tig0021468:38024-38043 | Msa1391960:CDS | 35.0% | |
| !! | TTTTGAAAGGAAATCTGGCA+AGG | - | tig0021468:37058-37077 | Msa1391960:CDS | 35.0% |
| AAGTGTAAGCCATACTTTCT+TGG | + | tig0021468:37223-37242 | None:intergenic | 35.0% | |
| GCATTCTCTACTTCTATCAT+TGG | - | tig0021468:37458-37477 | Msa1391960:CDS | 35.0% | |
| TCTCATAAGAGAAGGAAATG+GGG | - | tig0021468:37543-37562 | Msa1391960:intron | 35.0% | |
| CATGATATTTCGACACATTG+GGG | + | tig0021468:37600-37619 | None:intergenic | 35.0% | |
| GACCTATCCAGAAAAATTGT+CGG | - | tig0021468:37807-37826 | Msa1391960:intron | 35.0% | |
| ATCATAGACCAAGATCCAAA+CGG | + | tig0021468:37976-37995 | None:intergenic | 35.0% | |
| GATCTCTCTATGAATGGAAA+AGG | - | tig0021468:38022-38041 | Msa1391960:CDS | 35.0% | |
| TCTCTCTATGAATGGAAAAG+GGG | - | tig0021468:38024-38043 | Msa1391960:CDS | 35.0% | |
| ATGCGATCTAACAGACTAAC+AGG | - | tig0021468:37024-37043 | Msa1391960:CDS | 40.0% | |
| !!! | GGACAAGCAGTAGTTTTGAA+AGG | - | tig0021468:37045-37064 | Msa1391960:CDS | 40.0% |
| !! | TTTTAAACGGGCTTCTTCCT+AGG | + | tig0021468:37149-37168 | None:intergenic | 40.0% |
| ! | TTTGTTTGAGATCCGTTGCA+GGG | + | tig0021468:37185-37204 | None:intergenic | 40.0% |
| AGTATGGCTTACACTTCCTT+AGG | - | tig0021468:37227-37246 | Msa1391960:CDS | 40.0% | |
| !! | CATTGGTGCTATCGTATATG+AGG | - | tig0021468:37475-37494 | Msa1391960:CDS | 40.0% |
| CTCATAAGAGAAGGAAATGG+GGG | - | tig0021468:37544-37563 | Msa1391960:intron | 40.0% | |
| TGACATTACCACAAACCACT+TGG | + | tig0021468:37695-37714 | None:intergenic | 40.0% | |
| CTATTGGAAGCAAAGGGAAA+AGG | + | tig0021468:37784-37803 | None:intergenic | 40.0% | |
| GTCGAACTATTGGAAGCAAA+GGG | + | tig0021468:37790-37809 | None:intergenic | 40.0% | |
| TTCTGGATAGGTCGAACTAT+TGG | + | tig0021468:37800-37819 | None:intergenic | 40.0% | |
| GAATGTGGTTTCGATCCTTT+CGG | - | tig0021468:37835-37854 | Msa1391960:intron | 40.0% | |
| TCGTATATCGAAACGACTTC+TGG | + | tig0021468:37866-37885 | None:intergenic | 40.0% | |
| ! | AAGTCACCTTTTCCTTTCCT+TGG | - | tig0021468:37926-37945 | Msa1391960:CDS | 40.0% |
| ! | AGTCACCTTTTCCTTTCCTT+GGG | - | tig0021468:37927-37946 | Msa1391960:CDS | 40.0% |
| CCAAACGGATCAATCTTGTT+GGG | + | tig0021468:37961-37980 | None:intergenic | 40.0% | |
| TCCAAACGGATCAATCTTGT+TGG | + | tig0021468:37962-37981 | None:intergenic | 40.0% | |
| AGATTGATCCGTTTGGATCT+TGG | - | tig0021468:37965-37984 | Msa1391960:CDS | 40.0% | |
| GTTTGGATCTTGGTCTATGA+TGG | - | tig0021468:37975-37994 | Msa1391960:CDS | 40.0% | |
| CGATTGGATCTCTCTATGAA+TGG | - | tig0021468:38016-38035 | Msa1391960:CDS | 40.0% | |
| ATGCGATCTAACAGACTAAC+AGG | - | tig0021468:37024-37043 | Msa1391960:CDS | 40.0% | |
| !!! | GGACAAGCAGTAGTTTTGAA+AGG | - | tig0021468:37045-37064 | Msa1391960:CDS | 40.0% |
| !! | TTTTAAACGGGCTTCTTCCT+AGG | + | tig0021468:37149-37168 | None:intergenic | 40.0% |
| ! | TTTGTTTGAGATCCGTTGCA+GGG | + | tig0021468:37185-37204 | None:intergenic | 40.0% |
| AGTATGGCTTACACTTCCTT+AGG | - | tig0021468:37227-37246 | Msa1391960:CDS | 40.0% | |
| !! | CATTGGTGCTATCGTATATG+AGG | - | tig0021468:37475-37494 | Msa1391960:CDS | 40.0% |
| CTCATAAGAGAAGGAAATGG+GGG | - | tig0021468:37544-37563 | Msa1391960:intron | 40.0% | |
| TGACATTACCACAAACCACT+TGG | + | tig0021468:37695-37714 | None:intergenic | 40.0% | |
| CTATTGGAAGCAAAGGGAAA+AGG | + | tig0021468:37784-37803 | None:intergenic | 40.0% | |
| GTCGAACTATTGGAAGCAAA+GGG | + | tig0021468:37790-37809 | None:intergenic | 40.0% | |
| TTCTGGATAGGTCGAACTAT+TGG | + | tig0021468:37800-37819 | None:intergenic | 40.0% | |
| GAATGTGGTTTCGATCCTTT+CGG | - | tig0021468:37835-37854 | Msa1391960:intron | 40.0% | |
| TCGTATATCGAAACGACTTC+TGG | + | tig0021468:37866-37885 | None:intergenic | 40.0% | |
| ! | AAGTCACCTTTTCCTTTCCT+TGG | - | tig0021468:37926-37945 | Msa1391960:CDS | 40.0% |
| ! | AGTCACCTTTTCCTTTCCTT+GGG | - | tig0021468:37927-37946 | Msa1391960:CDS | 40.0% |
| CCAAACGGATCAATCTTGTT+GGG | + | tig0021468:37961-37980 | None:intergenic | 40.0% | |
| TCCAAACGGATCAATCTTGT+TGG | + | tig0021468:37962-37981 | None:intergenic | 40.0% | |
| AGATTGATCCGTTTGGATCT+TGG | - | tig0021468:37965-37984 | Msa1391960:CDS | 40.0% | |
| GTTTGGATCTTGGTCTATGA+TGG | - | tig0021468:37975-37994 | Msa1391960:CDS | 40.0% | |
| CGATTGGATCTCTCTATGAA+TGG | - | tig0021468:38016-38035 | Msa1391960:CDS | 40.0% | |
| GCAAACAAGGGATAGGGATA+AGG | - | tig0021468:37089-37108 | Msa1391960:CDS | 45.0% | |
| AGGCAAGTCTTTCCAGTAAG+TGG | - | tig0021468:37109-37128 | Msa1391960:CDS | 45.0% | |
| ! | CTTTGTTTGAGATCCGTTGC+AGG | + | tig0021468:37186-37205 | None:intergenic | 45.0% |
| AACGGATCTCAAACAAAGCG+TGG | - | tig0021468:37188-37207 | Msa1391960:CDS | 45.0% | |
| CTTCCTTAGGAAGTCAGAAC+TGG | - | tig0021468:37240-37259 | Msa1391960:CDS | 45.0% | |
| AAGTCAGAACTGGTGGAAGT+GGG | - | tig0021468:37250-37269 | Msa1391960:CDS | 45.0% | |
| CCTTTCAAGCAAGAAGGACT+CGG | - | tig0021468:37352-37371 | Msa1391960:CDS | 45.0% | |
| AGGAATGCACCCTAACCTAA+GGG | - | tig0021468:37385-37404 | Msa1391960:CDS | 45.0% | |
| TTTCGACACATTGGGGCTAT+GGG | + | tig0021468:37593-37612 | None:intergenic | 45.0% | |
| ATTTCGACACATTGGGGCTA+TGG | + | tig0021468:37594-37613 | None:intergenic | 45.0% | |
| ATATCATGATTGGGTCGACC+AGG | - | tig0021468:37612-37631 | Msa1391960:intron | 45.0% | |
| AAAGAAAAAAGATCCGGGCC+TGG | + | tig0021468:37633-37652 | None:intergenic | 45.0% | |
| AATGGAGCGAAAGAACCAAG+TGG | - | tig0021468:37677-37696 | Msa1391960:intron | 45.0% | |
| CGAAAGAACCAAGTGGTTTG+TGG | - | tig0021468:37684-37703 | Msa1391960:intron | 45.0% | |
| GGTCGAACTATTGGAAGCAA+AGG | + | tig0021468:37791-37810 | None:intergenic | 45.0% | |
| ! | GGCCGACAATTTTTCTGGAT+AGG | + | tig0021468:37812-37831 | None:intergenic | 45.0% |
| ! | TCGTAGGCCGACAATTTTTC+TGG | + | tig0021468:37817-37836 | None:intergenic | 45.0% |
| AAATTGTCGGCCTACGAATG+TGG | - | tig0021468:37820-37839 | Msa1391960:intron | 45.0% | |
| AGGATCGAAACCACATTCGT+AGG | + | tig0021468:37833-37852 | None:intergenic | 45.0% | |
| GGAAAGGAAAAGGTGACTTC+CGG | + | tig0021468:37925-37944 | None:intergenic | 45.0% | |
| TACTGCCCAAGGAAAGGAAA+AGG | + | tig0021468:37935-37954 | None:intergenic | 45.0% | |
| AACGGATCAATCTTGTTGGG+AGG | + | tig0021468:37958-37977 | None:intergenic | 45.0% | |
| CCCAACAAGATTGATCCGTT+TGG | - | tig0021468:37958-37977 | Msa1391960:CDS | 45.0% | |
| !! | TGAATGGAAAAGGGGTGCTT+CGG | - | tig0021468:38032-38051 | Msa1391960:CDS | 45.0% |
| GCAAACAAGGGATAGGGATA+AGG | - | tig0021468:37089-37108 | Msa1391960:CDS | 45.0% | |
| AGGCAAGTCTTTCCAGTAAG+TGG | - | tig0021468:37109-37128 | Msa1391960:CDS | 45.0% | |
| ! | CTTTGTTTGAGATCCGTTGC+AGG | + | tig0021468:37186-37205 | None:intergenic | 45.0% |
| AACGGATCTCAAACAAAGCG+TGG | - | tig0021468:37188-37207 | Msa1391960:CDS | 45.0% | |
| CTTCCTTAGGAAGTCAGAAC+TGG | - | tig0021468:37240-37259 | Msa1391960:CDS | 45.0% | |
| AAGTCAGAACTGGTGGAAGT+GGG | - | tig0021468:37250-37269 | Msa1391960:CDS | 45.0% | |
| CCTTTCAAGCAAGAAGGACT+CGG | - | tig0021468:37352-37371 | Msa1391960:CDS | 45.0% | |
| AGGAATGCACCCTAACCTAA+GGG | - | tig0021468:37385-37404 | Msa1391960:CDS | 45.0% | |
| TTTCGACACATTGGGGCTAT+GGG | + | tig0021468:37593-37612 | None:intergenic | 45.0% | |
| ATTTCGACACATTGGGGCTA+TGG | + | tig0021468:37594-37613 | None:intergenic | 45.0% | |
| ATATCATGATTGGGTCGACC+AGG | - | tig0021468:37612-37631 | Msa1391960:intron | 45.0% | |
| AAAGAAAAAAGATCCGGGCC+TGG | + | tig0021468:37633-37652 | None:intergenic | 45.0% | |
| AATGGAGCGAAAGAACCAAG+TGG | - | tig0021468:37677-37696 | Msa1391960:intron | 45.0% | |
| CGAAAGAACCAAGTGGTTTG+TGG | - | tig0021468:37684-37703 | Msa1391960:intron | 45.0% | |
| GGTCGAACTATTGGAAGCAA+AGG | + | tig0021468:37791-37810 | None:intergenic | 45.0% | |
| ! | GGCCGACAATTTTTCTGGAT+AGG | + | tig0021468:37812-37831 | None:intergenic | 45.0% |
| ! | TCGTAGGCCGACAATTTTTC+TGG | + | tig0021468:37817-37836 | None:intergenic | 45.0% |
| AAATTGTCGGCCTACGAATG+TGG | - | tig0021468:37820-37839 | Msa1391960:intron | 45.0% | |
| AGGATCGAAACCACATTCGT+AGG | + | tig0021468:37833-37852 | None:intergenic | 45.0% | |
| GGAAAGGAAAAGGTGACTTC+CGG | + | tig0021468:37925-37944 | None:intergenic | 45.0% | |
| TACTGCCCAAGGAAAGGAAA+AGG | + | tig0021468:37935-37954 | None:intergenic | 45.0% | |
| AACGGATCAATCTTGTTGGG+AGG | + | tig0021468:37958-37977 | None:intergenic | 45.0% | |
| CCCAACAAGATTGATCCGTT+TGG | - | tig0021468:37958-37977 | Msa1391960:CDS | 45.0% | |
| !! | TGAATGGAAAAGGGGTGCTT+CGG | - | tig0021468:38032-38051 | Msa1391960:CDS | 45.0% |
| ATTCGCTTGCGACCACTTAC+TGG | + | tig0021468:37124-37143 | None:intergenic | 50.0% | |
| GAAGTTCACATGCCCTGCAA+CGG | - | tig0021468:37170-37189 | Msa1391960:CDS | 50.0% | |
| CTGACAGCGCCAAGAAAGTA+TGG | - | tig0021468:37211-37230 | Msa1391960:CDS | 50.0% | |
| ! | CCACCAGTTCTGACTTCCTA+AGG | + | tig0021468:37246-37265 | None:intergenic | 50.0% |
| CCTTAGGAAGTCAGAACTGG+TGG | - | tig0021468:37243-37262 | Msa1391960:CDS | 50.0% | |
| GAAGTCAGAACTGGTGGAAG+TGG | - | tig0021468:37249-37268 | Msa1391960:CDS | 50.0% | |
| ! | GGCTGGCTAATTTACCGCAA+GGG | - | tig0021468:37271-37290 | Msa1391960:CDS | 50.0% |
| CTAATTTACCGCAAGGGCTC+AGG | - | tig0021468:37277-37296 | Msa1391960:CDS | 50.0% | |
| CCGAGTCCTTCTTGCTTGAA+AGG | + | tig0021468:37355-37374 | None:intergenic | 50.0% | |
| CTTAGGTTAGGGTGCATTCC+TGG | + | tig0021468:37386-37405 | None:intergenic | 50.0% | |
| CAGGAATGCACCCTAACCTA+AGG | - | tig0021468:37384-37403 | Msa1391960:CDS | 50.0% | |
| TTCCCCTCTCCCTTAGGTTA+GGG | + | tig0021468:37397-37416 | None:intergenic | 50.0% | |
| TTTCCCCTCTCCCTTAGGTT+AGG | + | tig0021468:37398-37417 | None:intergenic | 50.0% | |
| ACCTAAGGGAGAGGGGAAAA+AGG | - | tig0021468:37399-37418 | Msa1391960:CDS | 50.0% | |
| CCTAAGGGAGAGGGGAAAAA+GGG | - | tig0021468:37400-37419 | Msa1391960:CDS | 50.0% | |
| GGAGAGGGGAAAAAGGGATT+AGG | - | tig0021468:37406-37425 | Msa1391960:CDS | 50.0% | |
| AATGGGGGTCGTGGAAGAAT+TGG | - | tig0021468:37559-37578 | Msa1391960:intron | 50.0% | |
| ATGGGGGTCGTGGAAGAATT+GGG | - | tig0021468:37560-37579 | Msa1391960:intron | 50.0% | |
| GTTCTTTCGCTCCATTCTCG+CGG | + | tig0021468:37673-37692 | None:intergenic | 50.0% | |
| GAAAAGGTGACTTCCGGATC+AGG | + | tig0021468:37919-37938 | None:intergenic | 50.0% | |
| ATTCGCTTGCGACCACTTAC+TGG | + | tig0021468:37124-37143 | None:intergenic | 50.0% | |
| GAAGTTCACATGCCCTGCAA+CGG | - | tig0021468:37170-37189 | Msa1391960:CDS | 50.0% | |
| CTGACAGCGCCAAGAAAGTA+TGG | - | tig0021468:37211-37230 | Msa1391960:CDS | 50.0% | |
| ! | CCACCAGTTCTGACTTCCTA+AGG | + | tig0021468:37246-37265 | None:intergenic | 50.0% |
| CCTTAGGAAGTCAGAACTGG+TGG | - | tig0021468:37243-37262 | Msa1391960:CDS | 50.0% | |
| GAAGTCAGAACTGGTGGAAG+TGG | - | tig0021468:37249-37268 | Msa1391960:CDS | 50.0% | |
| ! | GGCTGGCTAATTTACCGCAA+GGG | - | tig0021468:37271-37290 | Msa1391960:CDS | 50.0% |
| CTAATTTACCGCAAGGGCTC+AGG | - | tig0021468:37277-37296 | Msa1391960:CDS | 50.0% | |
| CCGAGTCCTTCTTGCTTGAA+AGG | + | tig0021468:37355-37374 | None:intergenic | 50.0% | |
| CTTAGGTTAGGGTGCATTCC+TGG | + | tig0021468:37386-37405 | None:intergenic | 50.0% | |
| CAGGAATGCACCCTAACCTA+AGG | - | tig0021468:37384-37403 | Msa1391960:CDS | 50.0% | |
| TTCCCCTCTCCCTTAGGTTA+GGG | + | tig0021468:37397-37416 | None:intergenic | 50.0% | |
| TTTCCCCTCTCCCTTAGGTT+AGG | + | tig0021468:37398-37417 | None:intergenic | 50.0% | |
| ACCTAAGGGAGAGGGGAAAA+AGG | - | tig0021468:37399-37418 | Msa1391960:CDS | 50.0% | |
| CCTAAGGGAGAGGGGAAAAA+GGG | - | tig0021468:37400-37419 | Msa1391960:CDS | 50.0% | |
| GGAGAGGGGAAAAAGGGATT+AGG | - | tig0021468:37406-37425 | Msa1391960:CDS | 50.0% | |
| AATGGGGGTCGTGGAAGAAT+TGG | - | tig0021468:37559-37578 | Msa1391960:intron | 50.0% | |
| ATGGGGGTCGTGGAAGAATT+GGG | - | tig0021468:37560-37579 | Msa1391960:intron | 50.0% | |
| GTTCTTTCGCTCCATTCTCG+CGG | + | tig0021468:37673-37692 | None:intergenic | 50.0% | |
| GAAAAGGTGACTTCCGGATC+AGG | + | tig0021468:37919-37938 | None:intergenic | 50.0% | |
| TGGTCGCAAGCGAATGACCT+AGG | - | tig0021468:37129-37148 | Msa1391960:CDS | 55.0% | |
| !! | GGGCTGGCTAATTTACCGCA+AGG | - | tig0021468:37270-37289 | Msa1391960:CDS | 55.0% |
| CAATTAGGCCTGAGCCCTTG+CGG | + | tig0021468:37288-37307 | None:intergenic | 55.0% | |
| AAGGACTCGGCTTACTCACC+AGG | - | tig0021468:37365-37384 | Msa1391960:CDS | 55.0% | |
| TGCACCCTAACCTAAGGGAG+AGG | - | tig0021468:37390-37409 | Msa1391960:CDS | 55.0% | |
| GCACCCTAACCTAAGGGAGA+GGG | - | tig0021468:37391-37410 | Msa1391960:CDS | 55.0% | |
| CACCCTAACCTAAGGGAGAG+GGG | - | tig0021468:37392-37411 | Msa1391960:CDS | 55.0% | |
| ! | CCCTTTTTCCCCTCTCCCTT+AGG | + | tig0021468:37403-37422 | None:intergenic | 55.0% |
| AGAGAAGGAAATGGGGGTCG+TGG | - | tig0021468:37550-37569 | Msa1391960:intron | 55.0% | |
| CGACTTCTGGCATCACCGAA+AGG | + | tig0021468:37853-37872 | None:intergenic | 55.0% | |
| !! | TTGTTGGGAGGTACTGCCCA+AGG | + | tig0021468:37946-37965 | None:intergenic | 55.0% |
| !! | GGAAAAGGGGTGCTTCGGAT+CGG | - | tig0021468:38037-38056 | Msa1391960:CDS | 55.0% |
| !! | GAAAAGGGGTGCTTCGGATC+GGG | - | tig0021468:38038-38057 | Msa1391960:CDS | 55.0% |
| TGGTCGCAAGCGAATGACCT+AGG | - | tig0021468:37129-37148 | Msa1391960:CDS | 55.0% | |
| !! | GGGCTGGCTAATTTACCGCA+AGG | - | tig0021468:37270-37289 | Msa1391960:CDS | 55.0% |
| CAATTAGGCCTGAGCCCTTG+CGG | + | tig0021468:37288-37307 | None:intergenic | 55.0% | |
| AAGGACTCGGCTTACTCACC+AGG | - | tig0021468:37365-37384 | Msa1391960:CDS | 55.0% | |
| TGCACCCTAACCTAAGGGAG+AGG | - | tig0021468:37390-37409 | Msa1391960:CDS | 55.0% | |
| GCACCCTAACCTAAGGGAGA+GGG | - | tig0021468:37391-37410 | Msa1391960:CDS | 55.0% | |
| CACCCTAACCTAAGGGAGAG+GGG | - | tig0021468:37392-37411 | Msa1391960:CDS | 55.0% | |
| ! | CCCTTTTTCCCCTCTCCCTT+AGG | + | tig0021468:37403-37422 | None:intergenic | 55.0% |
| AGAGAAGGAAATGGGGGTCG+TGG | - | tig0021468:37550-37569 | Msa1391960:intron | 55.0% | |
| CGACTTCTGGCATCACCGAA+AGG | + | tig0021468:37853-37872 | None:intergenic | 55.0% | |
| !! | TTGTTGGGAGGTACTGCCCA+AGG | + | tig0021468:37946-37965 | None:intergenic | 55.0% |
| !! | GGAAAAGGGGTGCTTCGGAT+CGG | - | tig0021468:38037-38056 | Msa1391960:CDS | 55.0% |
| !! | GAAAAGGGGTGCTTCGGATC+GGG | - | tig0021468:38038-38057 | Msa1391960:CDS | 55.0% |
| CAGAACTGGTGGAAGTGGGC+TGG | - | tig0021468:37254-37273 | Msa1391960:CDS | 60.0% | |
| CGCAAGGGCTCAGGCCTAAT+TGG | - | tig0021468:37286-37305 | Msa1391960:CDS | 60.0% | |
| ATGATTGGGTCGACCAGGCC+CGG | - | tig0021468:37617-37636 | Msa1391960:intron | 60.0% | |
| ATTCTCGCGGAGCGGCATAC+CGG | + | tig0021468:37660-37679 | None:intergenic | 60.0% | |
| TTCGCTCCATTCTCGCGGAG+CGG | + | tig0021468:37668-37687 | None:intergenic | 60.0% | |
| !! | GGGAGGTACTGCCCAAGGAA+AGG | + | tig0021468:37941-37960 | None:intergenic | 60.0% |
| CAGAACTGGTGGAAGTGGGC+TGG | - | tig0021468:37254-37273 | Msa1391960:CDS | 60.0% | |
| CGCAAGGGCTCAGGCCTAAT+TGG | - | tig0021468:37286-37305 | Msa1391960:CDS | 60.0% | |
| ATGATTGGGTCGACCAGGCC+CGG | - | tig0021468:37617-37636 | Msa1391960:intron | 60.0% | |
| ATTCTCGCGGAGCGGCATAC+CGG | + | tig0021468:37660-37679 | None:intergenic | 60.0% | |
| TTCGCTCCATTCTCGCGGAG+CGG | + | tig0021468:37668-37687 | None:intergenic | 60.0% | |
| !! | GGGAGGTACTGCCCAAGGAA+AGG | + | tig0021468:37941-37960 | None:intergenic | 60.0% |
| GGTATGCCGCTCCGCGAGAA+TGG | - | tig0021468:37659-37678 | Msa1391960:intron | 65.0% | |
| GGTATGCCGCTCCGCGAGAA+TGG | - | tig0021468:37659-37678 | Msa1391960:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021468 | gene | 37024 | 38065 | 37024 | ID=Msa1391960;Name=Msa1391960 |
| tig0021468 | mRNA | 37024 | 38065 | 37024 | ID=Msa1391960-mRNA-1;Parent=Msa1391960;Name=Msa1391960-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|0|0|2|0|220 |
| tig0021468 | exon | 37917 | 38065 | 37917 | ID=Msa1391960-mRNA-1:exon:13017;Parent=Msa1391960-mRNA-1 |
| tig0021468 | exon | 37024 | 37537 | 37024 | ID=Msa1391960-mRNA-1:exon:13016;Parent=Msa1391960-mRNA-1 |
| tig0021468 | CDS | 37917 | 38065 | 37917 | ID=Msa1391960-mRNA-1:cds;Parent=Msa1391960-mRNA-1 |
| tig0021468 | CDS | 37024 | 37537 | 37024 | ID=Msa1391960-mRNA-1:cds;Parent=Msa1391960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
