Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397470 | ACJ85280.1 | 93.720 | 207 | 7 | 2 | 1 | 205 | 1 | 203 | 4.75e-140 | 401 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397470 | sp|Q8GSJ1|HIS1B_ARATH | 79.894 | 189 | 37 | 1 | 18 | 205 | 55 | 243 | 5.66e-107 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397470 | B7FKJ6 | 93.720 | 207 | 7 | 2 | 1 | 205 | 1 | 203 | 2.27e-140 | 401 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1264470 | Msa1397470 | 0.819131 | 1.364562e-52 | -8.615850e-47 |
| Msa0482990 | Msa1397470 | 0.889673 | 1.962456e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397470 | MtrunA17_Chr4g0073831 | 94.686 | 207 | 5 | 2 | 1 | 205 | 1 | 203 | 5.60e-144 | 405 |
| Msa1397470 | MtrunA17_Chr2g0277331 | 73.545 | 189 | 20 | 3 | 45 | 205 | 43 | 229 | 2.91e-91 | 273 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397470 | AT1G09795.1 | 79.894 | 189 | 37 | 1 | 18 | 205 | 55 | 243 | 5.76e-108 | 316 |
| Msa1397470 | AT1G58080.1 | 83.234 | 167 | 28 | 0 | 39 | 205 | 75 | 241 | 6.33e-104 | 305 |
Find 56 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAATTAACCTGAGGAATT+TGG | 0.106128 | tig0022159:+2618 | None:intergenic |
| TAATTTAAATATAAAGAATT+TGG | 0.161477 | tig0022159:+2979 | None:intergenic |
| CCATTATCTTTCATAAATTT+AGG | 0.185647 | tig0022159:+548 | None:intergenic |
| TAACAATGTCTTTGGGTCTT+TGG | 0.196414 | tig0022159:+2491 | None:intergenic |
| CTCGATATACTCACTGAATT+TGG | 0.245090 | tig0022159:-2427 | Msa1397470:CDS |
| AGAAGACATACGACCTTTAC+TGG | 0.266634 | tig0022159:+2709 | None:intergenic |
| AATAGAGAGGTAAACGAATT+TGG | 0.271491 | tig0022159:+2831 | None:intergenic |
| TTGTTTCAGATTCCGCAATA+TGG | 0.287466 | tig0022159:-781 | Msa1397470:intron |
| TTAATTAACCTGAGGAATTT+GGG | 0.303133 | tig0022159:+2619 | None:intergenic |
| CCTAAATTTATGAAAGATAA+TGG | 0.327102 | tig0022159:-548 | Msa1397470:CDS |
| ATTGTTAGAAAATTGTTATC+TGG | 0.350355 | tig0022159:-2475 | Msa1397470:CDS |
| TATCGTTGTCCACGAGGCTT+TGG | 0.367464 | tig0022159:-924 | Msa1397470:CDS |
| AGATTTCAAACTTGGAAGTC+TGG | 0.377840 | tig0022159:-2516 | Msa1397470:CDS |
| TTATCTGGAGATCTTGATCT+TGG | 0.378632 | tig0022159:-2460 | Msa1397470:CDS |
| AAGCCTCTGCGAGTTGCAAC+TGG | 0.392840 | tig0022159:-697 | Msa1397470:CDS |
| TACACTGCAGATTTCAAACT+TGG | 0.415322 | tig0022159:-2524 | Msa1397470:intron |
| TGAGACACCCCGGTTTGGTT+GGG | 0.423002 | tig0022159:+2940 | None:intergenic |
| AATTAAAGACCCAACCAAAC+CGG | 0.424516 | tig0022159:-2949 | Msa1397470:five_prime_UTR |
| GATCTTGATCTTGGTATTGT+CGG | 0.455049 | tig0022159:-2451 | Msa1397470:CDS |
| TTGAGACACCCCGGTTTGGT+TGG | 0.457570 | tig0022159:+2939 | None:intergenic |
| TTCGACTGCTGACGGAGCAC+TGG | 0.466865 | tig0022159:-507 | Msa1397470:CDS |
| GTCCACGAGGCTTTGGAGTA+CGG | 0.469178 | tig0022159:-917 | Msa1397470:CDS |
| GATCTCTTGTCTTCTGCTGC+CGG | 0.470766 | tig0022159:+2745 | None:intergenic |
| TCGATTGAGACACCCCGGTT+TGG | 0.482709 | tig0022159:+2935 | None:intergenic |
| TTGTCAATTGTCAGTCAAGC+AGG | 0.495907 | tig0022159:-2663 | Msa1397470:CDS |
| ATTAAAGACCCAACCAAACC+GGG | 0.504521 | tig0022159:-2948 | Msa1397470:five_prime_UTR |
| ATGAGTCTCGGAGGAGATTG+AGG | 0.524502 | tig0022159:+2799 | None:intergenic |
| CAGAAGACAAGAGATCCGTC+TGG | 0.525828 | tig0022159:-2738 | Msa1397470:CDS |
| GTATGTTGCCCAAATTCCTC+AGG | 0.527688 | tig0022159:-2627 | Msa1397470:intron |
| AAGAGGAACGACGCTGATGA+TGG | 0.534603 | tig0022159:+2886 | None:intergenic |
| TGATACACTCGACCTTCTCA+AGG | 0.552104 | tig0022159:-2687 | Msa1397470:CDS |
| GGCTTATCTTCTGTCCATTG+AGG | 0.552577 | tig0022159:+715 | None:intergenic |
| GACTGCTGACGGAGCACTGG+AGG | 0.563946 | tig0022159:-504 | Msa1397470:CDS |
| AATGACAACACAATCTCCTC+CGG | 0.573673 | tig0022159:-2764 | Msa1397470:CDS |
| AGCACTGGAGGCAGCTCCTG+CGG | 0.577767 | tig0022159:-492 | None:intergenic |
| CGTCTGGGTTTACCCAGTAA+AGG | 0.581574 | tig0022159:-2722 | Msa1397470:CDS |
| TGAAAATGTAAATTCACTAG+AGG | 0.584392 | tig0022159:-752 | Msa1397470:CDS |
| CTCTTGTCTTCTGCTGCCGG+AGG | 0.586047 | tig0022159:+2748 | None:intergenic |
| TATACTCACTGAATTTGGCC+AGG | 0.586920 | tig0022159:-2422 | Msa1397470:intron |
| GTAATTTCAACTCACCGCAA+TGG | 0.599912 | tig0022159:+880 | None:intergenic |
| AAGAACTTGATGATGAGTCT+CGG | 0.602026 | tig0022159:+2787 | None:intergenic |
| GAAGACATACGACCTTTACT+GGG | 0.626259 | tig0022159:+2710 | None:intergenic |
| AGAAGACAAGAGATCCGTCT+GGG | 0.626407 | tig0022159:-2737 | Msa1397470:CDS |
| ACAATTGACAATCCTTGAGA+AGG | 0.631059 | tig0022159:+2675 | None:intergenic |
| TGATTGTCGTTTATCCATTG+CGG | 0.633490 | tig0022159:-894 | Msa1397470:intron |
| AGATAATGGTATTAAGCATG+TGG | 0.634797 | tig0022159:-534 | Msa1397470:CDS |
| GAGGCGTAGCAGCAATAGAG+AGG | 0.638994 | tig0022159:+2818 | None:intergenic |
| AATCCAGTTGCAACTCGCAG+AGG | 0.653851 | tig0022159:+694 | None:intergenic |
| AGTGTTCGATTGAGACACCC+CGG | 0.654360 | tig0022159:+2930 | None:intergenic |
| AGATCTTATCGTTGTCCACG+AGG | 0.663229 | tig0022159:-930 | Msa1397470:CDS |
| CACCGTACTCCAAAGCCTCG+TGG | 0.672065 | tig0022159:+915 | None:intergenic |
| CTTTACTGGGTAAACCCAGA+CGG | 0.678884 | tig0022159:+2723 | None:intergenic |
| ATTTGGGCAACATACTGACG+TGG | 0.682664 | tig0022159:+2635 | None:intergenic |
| GATGGCGAAGCTAAAGTCTG+TGG | 0.688485 | tig0022159:+2904 | None:intergenic |
| AACTTGATGATGAGTCTCGG+AGG | 0.694599 | tig0022159:+2790 | None:intergenic |
| TTAAAGACCCAACCAAACCG+GGG | 0.720593 | tig0022159:-2947 | Msa1397470:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTATAATGAAGAGA+AGG | + | tig0022159:907-926 | None:intergenic | 15.0% |
| !! | AAGATAACAAAGAAATTATT+TGG | + | tig0022159:1090-1109 | None:intergenic | 15.0% |
| !!! | TTTTATATGTTTCAATGTAT+GGG | - | tig0022159:1134-1153 | Msa1397470:intron | 15.0% |
| !! | AAAAAACAATCACATTAATT+GGG | + | tig0022159:1222-1241 | None:intergenic | 15.0% |
| !!! | ATAAATTCTAAGAAAATAGA+AGG | + | tig0022159:1456-1475 | None:intergenic | 15.0% |
| !!! | TGTTTGAATTTTAAATTTAG+CGG | + | tig0022159:2070-2089 | None:intergenic | 15.0% |
| !! | ATGTTAATTGTACTAAATAT+AGG | + | tig0022159:2100-2119 | None:intergenic | 15.0% |
| !!! | AATTTTCTAACAATGTCTTT+GGG | + | tig0022159:1004-1023 | None:intergenic | 20.0% |
| !! | ATTGTTAGAAAATTGTTATC+TGG | - | tig0022159:1010-1029 | Msa1397470:intron | 20.0% |
| !!! | AATTTCTTTGTTATCTTTTC+TGG | - | tig0022159:1093-1112 | Msa1397470:intron | 20.0% |
| !!! | ATTTCTTTGTTATCTTTTCT+GGG | - | tig0022159:1094-1113 | Msa1397470:intron | 20.0% |
| !!! | CTTTTATATGTTTCAATGTA+TGG | - | tig0022159:1133-1152 | Msa1397470:intron | 20.0% |
| !! | GAAAAAACAATCACATTAAT+TGG | + | tig0022159:1223-1242 | None:intergenic | 20.0% |
| !!! | ATTAATGTGATTGTTTTTTC+CGG | - | tig0022159:1223-1242 | Msa1397470:intron | 20.0% |
| !! | AATTCCAAAACCAAAATTTA+TGG | + | tig0022159:1649-1668 | None:intergenic | 20.0% |
| !!! | AATCGTTTTCTATAGAAAAA+AGG | - | tig0022159:1943-1962 | Msa1397470:intron | 20.0% |
| !!! | GTTTGAATTTTAAATTTAGC+GGG | + | tig0022159:2069-2088 | None:intergenic | 20.0% |
| !!! | GATAAAAATATTGATTCTCA+TGG | + | tig0022159:2504-2523 | None:intergenic | 20.0% |
| !! | TATAACAATTATCCTTTATC+AGG | - | tig0022159:2525-2544 | Msa1397470:intron | 20.0% |
| !! | ATAACAATTATCCTTTATCA+GGG | - | tig0022159:2526-2545 | Msa1397470:intron | 20.0% |
| !!! | TTTTCAAATATTCCATATTG+CGG | + | tig0022159:2719-2738 | None:intergenic | 20.0% |
| !! | CCATTATCTTTCATAAATTT+AGG | + | tig0022159:2940-2959 | None:intergenic | 20.0% |
| !! | CCTAAATTTATGAAAGATAA+TGG | - | tig0022159:2937-2956 | Msa1397470:five_prime_UTR | 20.0% |
| ! | TTAATTAACCTGAGGAATTT+GGG | + | tig0022159:869-888 | None:intergenic | 25.0% |
| ! | ATTAATTAACCTGAGGAATT+TGG | + | tig0022159:870-889 | None:intergenic | 25.0% |
| ! | GTAAGTAATTAATTAACCTG+AGG | + | tig0022159:877-896 | None:intergenic | 25.0% |
| !! | CAATTTTCTAACAATGTCTT+TGG | + | tig0022159:1005-1024 | None:intergenic | 25.0% |
| ! | GCAAATGATACAAAATTACT+AGG | - | tig0022159:1269-1288 | Msa1397470:intron | 25.0% |
| ! | TGATACAAAATTACTAGGAA+AGG | - | tig0022159:1274-1293 | Msa1397470:intron | 25.0% |
| ! | GATACAAAATTACTAGGAAA+GGG | - | tig0022159:1275-1294 | Msa1397470:intron | 25.0% |
| ! | AAATTCTTTCAAATTTCGGA+GGG | + | tig0022159:1677-1696 | None:intergenic | 25.0% |
| ! | CCACAAATTCTTTCAAATTT+CGG | + | tig0022159:1681-1700 | None:intergenic | 25.0% |
| ! | TGAAAATGTAAATTCACTAG+AGG | - | tig0022159:2733-2752 | Msa1397470:CDS | 25.0% |
| ! | TAAATGTGAATCACATACAT+AGG | + | tig0022159:2819-2838 | None:intergenic | 25.0% |
| !!! | ATGTTTTGAAGTTTTATCTG+TGG | - | tig0022159:2843-2862 | Msa1397470:CDS | 25.0% |
| AATAGAGAGGTAAACGAATT+TGG | + | tig0022159:657-676 | None:intergenic | 30.0% | |
| ATTATAATGAAGAGAAGGTG+AGG | + | tig0022159:902-921 | None:intergenic | 30.0% | |
| ACAAAGAAATTATTTGGACC+TGG | + | tig0022159:1084-1103 | None:intergenic | 30.0% | |
| ACAATCACATTAATTGGGAA+CGG | + | tig0022159:1217-1236 | None:intergenic | 30.0% | |
| TGCTTCTCTGAATAAATTGA+AGG | + | tig0022159:1355-1374 | None:intergenic | 30.0% | |
| !! | GAAATGAAGCTATTTCTACT+AGG | + | tig0022159:1485-1504 | None:intergenic | 30.0% |
| ! | TTTTACCTGTGGTTAAATTG+GGG | + | tig0022159:1508-1527 | None:intergenic | 30.0% |
| ! | CTTTTACCTGTGGTTAAATT+GGG | + | tig0022159:1509-1528 | None:intergenic | 30.0% |
| !!! | TAAAAGCCCTGCATTTTTTT+GGG | - | tig0022159:1523-1542 | Msa1397470:intron | 30.0% |
| AACATTCCCAAAAAAATGCA+GGG | + | tig0022159:1532-1551 | None:intergenic | 30.0% | |
| !! | TATATGTGACTTGTTACTGA+TGG | - | tig0022159:1589-1608 | Msa1397470:intron | 30.0% |
| ! | CAACTAGAGTCCATAAATTT+TGG | - | tig0022159:1636-1655 | Msa1397470:intron | 30.0% |
| !!! | GAGTCCATAAATTTTGGTTT+TGG | - | tig0022159:1642-1661 | Msa1397470:intron | 30.0% |
| AATTCTTTCAAATTTCGGAG+GGG | + | tig0022159:1676-1695 | None:intergenic | 30.0% | |
| CAAATTCTTTCAAATTTCGG+AGG | + | tig0022159:1678-1697 | None:intergenic | 30.0% | |
| CCGAAATTTGAAAGAATTTG+TGG | - | tig0022159:1678-1697 | Msa1397470:intron | 30.0% | |
| TTCAGATATTTGGTATTGCA+GGG | + | tig0022159:1762-1781 | None:intergenic | 30.0% | |
| ATTCAGATATTTGGTATTGC+AGG | + | tig0022159:1763-1782 | None:intergenic | 30.0% | |
| AGAATAAACCACCTTGAAAT+TGG | - | tig0022159:1815-1834 | Msa1397470:intron | 30.0% | |
| GAATAAACCACCTTGAAATT+GGG | - | tig0022159:1816-1835 | Msa1397470:intron | 30.0% | |
| AAAAAAGGAATAGCATATCC+CGG | - | tig0022159:1958-1977 | Msa1397470:intron | 30.0% | |
| !!! | ATCGAATTGCAGTTAGTTTT+AGG | + | tig0022159:1991-2010 | None:intergenic | 30.0% |
| AAGTTGGCATAATGGTTAAT+AGG | + | tig0022159:2021-2040 | None:intergenic | 30.0% | |
| !! | TTCTTTGAAACATCTATCTC+TGG | - | tig0022159:2275-2294 | Msa1397470:intron | 30.0% |
| CACAAAACAATGAAATCGAT+AGG | + | tig0022159:2658-2677 | None:intergenic | 30.0% | |
| ! | AGATAATGGTATTAAGCATG+TGG | - | tig0022159:2951-2970 | Msa1397470:five_prime_UTR | 30.0% |
| AATTAAAGACCCAACCAAAC+CGG | - | tig0022159:536-555 | Msa1397470:CDS | 35.0% | |
| !! | AAGAACTTGATGATGAGTCT+CGG | + | tig0022159:701-720 | None:intergenic | 35.0% |
| ACAATTGACAATCCTTGAGA+AGG | + | tig0022159:813-832 | None:intergenic | 35.0% | |
| TACACTGCAGATTTCAAACT+TGG | - | tig0022159:961-980 | Msa1397470:intron | 35.0% | |
| AGATTTCAAACTTGGAAGTC+TGG | - | tig0022159:969-988 | Msa1397470:intron | 35.0% | |
| TAACAATGTCTTTGGGTCTT+TGG | + | tig0022159:997-1016 | None:intergenic | 35.0% | |
| TTATCTGGAGATCTTGATCT+TGG | - | tig0022159:1025-1044 | Msa1397470:intron | 35.0% | |
| GATCTTGATCTTGGTATTGT+CGG | - | tig0022159:1034-1053 | Msa1397470:intron | 35.0% | |
| CTCGATATACTCACTGAATT+TGG | - | tig0022159:1058-1077 | Msa1397470:intron | 35.0% | |
| ! | ATGTTTCAATGTATGGGCTA+AGG | - | tig0022159:1140-1159 | Msa1397470:intron | 35.0% |
| ! | TGTTTCAATGTATGGGCTAA+GGG | - | tig0022159:1141-1160 | Msa1397470:intron | 35.0% |
| CAAAGAAGACTGTGAAGAAA+CGG | + | tig0022159:1397-1416 | None:intergenic | 35.0% | |
| ATATGATACTGCTGCTAATG+CGG | + | tig0022159:1423-1442 | None:intergenic | 35.0% | |
| TTTACCTGTGGTTAAATTGG+GGG | + | tig0022159:1507-1526 | None:intergenic | 35.0% | |
| ! | GCTTTTACCTGTGGTTAAAT+TGG | + | tig0022159:1510-1529 | None:intergenic | 35.0% |
| !!! | GTAAAAGCCCTGCATTTTTT+TGG | - | tig0022159:1522-1541 | Msa1397470:intron | 35.0% |
| GAACATTCCCAAAAAAATGC+AGG | + | tig0022159:1533-1552 | None:intergenic | 35.0% | |
| CAGTAACAAGTCACATATAG+AGG | + | tig0022159:1588-1607 | None:intergenic | 35.0% | |
| ! | GATGGTGAAGCAATTTTCAT+CGG | - | tig0022159:1607-1626 | Msa1397470:intron | 35.0% |
| ATTCTTTCAAATTTCGGAGG+GGG | + | tig0022159:1675-1694 | None:intergenic | 35.0% | |
| GTGAGGCAAATTCAGATATT+TGG | + | tig0022159:1772-1791 | None:intergenic | 35.0% | |
| AAACCATGATAAGCTTCAAG+TGG | + | tig0022159:1900-1919 | None:intergenic | 35.0% | |
| TGTGAATAGTCACTACTTAC+TGG | + | tig0022159:2155-2174 | None:intergenic | 35.0% | |
| AGGGCATACAAAAAAGATTG+TGG | + | tig0022159:2419-2438 | None:intergenic | 35.0% | |
| AAAGCAAAGTTGCATGATCA+GGG | + | tig0022159:2438-2457 | None:intergenic | 35.0% | |
| AAAAGCAAAGTTGCATGATC+AGG | + | tig0022159:2439-2458 | None:intergenic | 35.0% | |
| CAATTGCAGAACAATGTTCT+GGG | - | tig0022159:2474-2493 | Msa1397470:CDS | 35.0% | |
| ! | TGATTGTCGTTTATCCATTG+CGG | - | tig0022159:2591-2610 | Msa1397470:intron | 35.0% |
| TTGTTTCAGATTCCGCAATA+TGG | - | tig0022159:2704-2723 | Msa1397470:CDS | 35.0% | |
| ATTAAAGACCCAACCAAACC+GGG | - | tig0022159:537-556 | Msa1397470:CDS | 40.0% | |
| AATGACAACACAATCTCCTC+CGG | - | tig0022159:721-740 | Msa1397470:CDS | 40.0% | |
| GAAGACATACGACCTTTACT+GGG | + | tig0022159:778-797 | None:intergenic | 40.0% | |
| AGAAGACATACGACCTTTAC+TGG | + | tig0022159:779-798 | None:intergenic | 40.0% | |
| TTGTCAATTGTCAGTCAAGC+AGG | - | tig0022159:822-841 | Msa1397470:intron | 40.0% | |
| TATACTCACTGAATTTGGCC+AGG | - | tig0022159:1063-1082 | Msa1397470:intron | 40.0% | |
| ! | GTTTCAATGTATGGGCTAAG+GGG | - | tig0022159:1142-1161 | Msa1397470:intron | 40.0% |
| ATTTCCCCCAATTTAACCAC+AGG | - | tig0022159:1500-1519 | Msa1397470:intron | 40.0% | |
| AAGGTGGTTTATTCTTCGTG+TGG | + | tig0022159:1810-1829 | None:intergenic | 40.0% | |
| GAAGATTCATGTTTGCGGTT+GGG | + | tig0022159:1853-1872 | None:intergenic | 40.0% | |
| CATCGGAAGATTCATGTTTG+CGG | + | tig0022159:1858-1877 | None:intergenic | 40.0% | |
| AATCTTCCGATGCTTTGACA+AGG | - | tig0022159:1866-1885 | Msa1397470:intron | 40.0% | |
| ACTCCACTTGAAGCTTATCA+TGG | - | tig0022159:1894-1913 | Msa1397470:intron | 40.0% | |
| !!! | TTAGTTTTAGGTGCAGAACC+GGG | + | tig0022159:1979-1998 | None:intergenic | 40.0% |
| !!! | GTTAGTTTTAGGTGCAGAAC+CGG | + | tig0022159:1980-1999 | None:intergenic | 40.0% |
| ! | ATGTTTGATGTCGCTTCACT+GGG | + | tig0022159:2045-2064 | None:intergenic | 40.0% |
| ! | AATGTTTGATGTCGCTTCAC+TGG | + | tig0022159:2046-2065 | None:intergenic | 40.0% |
| ACGACTAGCATCCTCAATTT+CGG | + | tig0022159:2217-2236 | None:intergenic | 40.0% | |
| ACATCTATCTCTGGTCATCA+TGG | - | tig0022159:2284-2303 | Msa1397470:intron | 40.0% | |
| !! | ATGCAACTTTGCTTTTCCCT+CGG | - | tig0022159:2443-2462 | Msa1397470:CDS | 40.0% |
| TGCAATTGCATTTAAGCCGA+GGG | + | tig0022159:2462-2481 | None:intergenic | 40.0% | |
| GCAATTGCAGAACAATGTTC+TGG | - | tig0022159:2473-2492 | Msa1397470:CDS | 40.0% | |
| GATCTTCATTGCCCTGATAA+AGG | + | tig0022159:2540-2559 | None:intergenic | 40.0% | |
| GTAATTTCAACTCACCGCAA+TGG | + | tig0022159:2608-2627 | None:intergenic | 40.0% | |
| ! | TTGCGGAATCTGAAACAACA+GGG | + | tig0022159:2702-2721 | None:intergenic | 40.0% |
| ! | ATTGCGGAATCTGAAACAAC+AGG | + | tig0022159:2703-2722 | None:intergenic | 40.0% |
| AGCTAGCAAAAATGCCTCAA+TGG | - | tig0022159:2756-2775 | Msa1397470:CDS | 40.0% | |
| TTTCCTTCTTACTCTTCAGC+TGG | - | tig0022159:2912-2931 | Msa1397470:five_prime_UTR | 40.0% | |
| TTCCTTCTTACTCTTCAGCT+GGG | - | tig0022159:2913-2932 | Msa1397470:five_prime_UTR | 40.0% | |
| TTAAAGACCCAACCAAACCG+GGG | - | tig0022159:538-557 | Msa1397470:CDS | 45.0% | |
| !! | AACTTGATGATGAGTCTCGG+AGG | + | tig0022159:698-717 | None:intergenic | 45.0% |
| AGAAGACAAGAGATCCGTCT+GGG | - | tig0022159:748-767 | Msa1397470:CDS | 45.0% | |
| CTTTACTGGGTAAACCCAGA+CGG | + | tig0022159:765-784 | None:intergenic | 45.0% | |
| TGATACACTCGACCTTCTCA+AGG | - | tig0022159:798-817 | Msa1397470:intron | 45.0% | |
| ATTTGGGCAACATACTGACG+TGG | + | tig0022159:853-872 | None:intergenic | 45.0% | |
| GTATGTTGCCCAAATTCCTC+AGG | - | tig0022159:858-877 | Msa1397470:intron | 45.0% | |
| GAAGGAGGAGATTCATAGCA+GGG | - | tig0022159:1164-1183 | Msa1397470:intron | 45.0% | |
| TGTAGCGTAGGCTATGTAAC+CGG | + | tig0022159:1245-1264 | None:intergenic | 45.0% | |
| TACATAGCCTACGCTACATG+TGG | - | tig0022159:1247-1266 | Msa1397470:intron | 45.0% | |
| TCATTTGCCACATGTAGCGT+AGG | + | tig0022159:1257-1276 | None:intergenic | 45.0% | |
| GTGAAGAAACGGAAACGAGA+AGG | + | tig0022159:1386-1405 | None:intergenic | 45.0% | |
| ! | AAATGCAGGGCTTTTACCTG+TGG | + | tig0022159:1519-1538 | None:intergenic | 45.0% |
| ! | GGCTATAGTATCTGAGACGT+CGG | + | tig0022159:1567-1586 | None:intergenic | 45.0% |
| GGTTTCGAGCTAAGATAGTG+AGG | + | tig0022159:1789-1808 | None:intergenic | 45.0% | |
| CTAGAGGTCTCCCAATTTCA+AGG | + | tig0022159:1829-1848 | None:intergenic | 45.0% | |
| GGAAGATTCATGTTTGCGGT+TGG | + | tig0022159:1854-1873 | None:intergenic | 45.0% | |
| TTACCGCCTTGTCAAAGCAT+CGG | + | tig0022159:1875-1894 | None:intergenic | 45.0% | |
| CACTGGGAAAGTTGGCATAA+TGG | + | tig0022159:2029-2048 | None:intergenic | 45.0% | |
| ! | CACTACTTACTGGTCTCAGT+AGG | + | tig0022159:2145-2164 | None:intergenic | 45.0% |
| CTCTGATGAGTCCGAAATTG+AGG | - | tig0022159:2203-2222 | Msa1397470:intron | 45.0% | |
| TTGTGTGCTTTAGCCCTGAT+CGG | - | tig0022159:2343-2362 | Msa1397470:intron | 45.0% | |
| CTGCAATTGCATTTAAGCCG+AGG | + | tig0022159:2463-2482 | None:intergenic | 45.0% | |
| AGATCTTATCGTTGTCCACG+AGG | - | tig0022159:2555-2574 | Msa1397470:intron | 45.0% | |
| ! | TGCGGAATCTGAAACAACAG+GGG | + | tig0022159:2701-2720 | None:intergenic | 45.0% |
| GGCTTATCTTCTGTCCATTG+AGG | + | tig0022159:2773-2792 | None:intergenic | 45.0% | |
| !! | TAATTTAAATATAAAGAATT+TGG | + | tig0022159:509-528 | None:intergenic | 5.0% |
| AGTGTTCGATTGAGACACCC+CGG | + | tig0022159:558-577 | None:intergenic | 50.0% | |
| GATGGCGAAGCTAAAGTCTG+TGG | + | tig0022159:584-603 | None:intergenic | 50.0% | |
| AAGAGGAACGACGCTGATGA+TGG | + | tig0022159:602-621 | None:intergenic | 50.0% | |
| ATGAGTCTCGGAGGAGATTG+AGG | + | tig0022159:689-708 | None:intergenic | 50.0% | |
| GATCTCTTGTCTTCTGCTGC+CGG | + | tig0022159:743-762 | None:intergenic | 50.0% | |
| CAGAAGACAAGAGATCCGTC+TGG | - | tig0022159:747-766 | Msa1397470:CDS | 50.0% | |
| CGTCTGGGTTTACCCAGTAA+AGG | - | tig0022159:763-782 | Msa1397470:CDS | 50.0% | |
| ! | CAATGTATGGGCTAAGGGGA+AGG | - | tig0022159:1146-1165 | Msa1397470:intron | 50.0% |
| GGAAGGAGGAGATTCATAGC+AGG | - | tig0022159:1163-1182 | Msa1397470:intron | 50.0% | |
| GAGGTCTCCCAATTTCAAGG+TGG | + | tig0022159:1826-1845 | None:intergenic | 50.0% | |
| ATGTTTGCGGTTGGGTCTAG+AGG | + | tig0022159:1845-1864 | None:intergenic | 50.0% | |
| CTTCCGATGCTTTGACAAGG+CGG | - | tig0022159:1869-1888 | Msa1397470:intron | 50.0% | |
| ! | TGTCGCTTCACTGGGAAAGT+TGG | + | tig0022159:2037-2056 | None:intergenic | 50.0% |
| TTCGGACTCATCAGAGCTGT+GGG | + | tig0022159:2199-2218 | None:intergenic | 50.0% | |
| TTTCGGACTCATCAGAGCTG+TGG | + | tig0022159:2200-2219 | None:intergenic | 50.0% | |
| TATCGTTGTCCACGAGGCTT+TGG | - | tig0022159:2561-2580 | Msa1397470:intron | 50.0% | |
| AATCCAGTTGCAACTCGCAG+AGG | + | tig0022159:2794-2813 | None:intergenic | 50.0% | |
| GACCCAGCTGAAGAGTAAGA+AGG | + | tig0022159:2918-2937 | None:intergenic | 50.0% | |
| ! | GTGGCATTTTCGACTGCTGA+CGG | - | tig0022159:2970-2989 | Msa1397470:five_prime_UTR | 50.0% |
| !! | TGAGACACCCCGGTTTGGTT+GGG | + | tig0022159:548-567 | None:intergenic | 55.0% |
| !! | TTGAGACACCCCGGTTTGGT+TGG | + | tig0022159:549-568 | None:intergenic | 55.0% |
| TCGATTGAGACACCCCGGTT+TGG | + | tig0022159:553-572 | None:intergenic | 55.0% | |
| ATTGCTGCTGCTGCTGCAAG+AGG | + | tig0022159:619-638 | None:intergenic | 55.0% | |
| GAGGCGTAGCAGCAATAGAG+AGG | + | tig0022159:670-689 | None:intergenic | 55.0% | |
| ! | TGTATGGGCTAAGGGGAAGG+AGG | - | tig0022159:1149-1168 | Msa1397470:intron | 55.0% |
| TGTGCTTTAGCCCTGATCGG+CGG | - | tig0022159:2346-2365 | Msa1397470:intron | 55.0% | |
| GCAAGTAGAACCGCCGATCA+GGG | + | tig0022159:2359-2378 | None:intergenic | 55.0% | |
| !! | GTCCACGAGGCTTTGGAGTA+CGG | - | tig0022159:2568-2587 | Msa1397470:intron | 55.0% |
| AAGCCTCTGCGAGTTGCAAC+TGG | - | tig0022159:2788-2807 | Msa1397470:CDS | 55.0% | |
| CTCTTGTCTTCTGCTGCCGG+AGG | + | tig0022159:740-759 | None:intergenic | 60.0% | |
| CGCAAGTAGAACCGCCGATC+AGG | + | tig0022159:2360-2379 | None:intergenic | 60.0% | |
| CACCGTACTCCAAAGCCTCG+TGG | + | tig0022159:2573-2592 | None:intergenic | 60.0% | |
| TTCGACTGCTGACGGAGCAC+TGG | - | tig0022159:2978-2997 | Msa1397470:five_prime_UTR | 60.0% | |
| !! | GACTGCTGACGGAGCACTGG+AGG | - | tig0022159:2981-3000 | Msa1397470:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022159 | gene | 493 | 3014 | 493 | ID=Msa1397470;Name=Msa1397470 |
| tig0022159 | mRNA | 493 | 3014 | 493 | ID=Msa1397470-mRNA-1;Parent=Msa1397470;Name=Msa1397470-mRNA-1;_AED=0.11;_eAED=0.11;_QI=144|0.5|0.4|1|1|1|5|0|205 |
| tig0022159 | exon | 493 | 576 | 493 | ID=Msa1397470-mRNA-1:exon:16102;Parent=Msa1397470-mRNA-1 |
| tig0022159 | exon | 687 | 794 | 687 | ID=Msa1397470-mRNA-1:exon:16101;Parent=Msa1397470-mRNA-1 |
| tig0022159 | exon | 895 | 960 | 895 | ID=Msa1397470-mRNA-1:exon:16100;Parent=Msa1397470-mRNA-1 |
| tig0022159 | exon | 2423 | 2536 | 2423 | ID=Msa1397470-mRNA-1:exon:16099;Parent=Msa1397470-mRNA-1 |
| tig0022159 | exon | 2628 | 3014 | 2628 | ID=Msa1397470-mRNA-1:exon:16098;Parent=Msa1397470-mRNA-1 |
| tig0022159 | five_prime_UTR | 2871 | 3014 | 2871 | ID=Msa1397470-mRNA-1:five_prime_utr;Parent=Msa1397470-mRNA-1 |
| tig0022159 | CDS | 2628 | 2870 | 2628 | ID=Msa1397470-mRNA-1:cds;Parent=Msa1397470-mRNA-1 |
| tig0022159 | CDS | 2423 | 2536 | 2423 | ID=Msa1397470-mRNA-1:cds;Parent=Msa1397470-mRNA-1 |
| tig0022159 | CDS | 895 | 960 | 895 | ID=Msa1397470-mRNA-1:cds;Parent=Msa1397470-mRNA-1 |
| tig0022159 | CDS | 687 | 794 | 687 | ID=Msa1397470-mRNA-1:cds;Parent=Msa1397470-mRNA-1 |
| tig0022159 | CDS | 493 | 576 | 493 | ID=Msa1397470-mRNA-1:cds;Parent=Msa1397470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
