AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0482990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0482990 MtrunA17_Chr4g0073831 96.552 377 7 2 1 375 1 373 0.0 744
Msa0482990 MtrunA17_Chr2g0277331 77.913 412 35 6 3 375 5 399 0.0 614
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0482990 AT1G09795.1 81.894 359 64 1 18 375 55 413 0.0 612
Msa0482990 AT1G58080.1 82.789 337 58 0 39 375 75 411 0.0 592

Find 117 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTTGATTCTAGATAATT+TGG 0.073437 3_3:+90721195 Msa0482990:three_prime_UTR
ATTAATTAACCTGAGGAATT+TGG 0.106128 3_3:-90716395 None:intergenic
TCATACATGTGTTCCATTTA+TGG 0.107480 3_3:+90720973 Msa0482990:three_prime_UTR
CCATTATCTTTCATAAATTT+AGG 0.185647 3_3:-90718471 None:intergenic
TAACAATGTCTTTGGGTCTT+TGG 0.196414 3_3:-90716526 None:intergenic
TCTGCATTGATAACATCTTT+AGG 0.240128 3_3:-90721045 None:intergenic
CTCGATATACTCACTGAATT+TGG 0.245090 3_3:+90716590 Msa0482990:CDS
CTGCATTGATAACATCTTTA+GGG 0.247183 3_3:-90721044 None:intergenic
AATTGAAGGTGGAACTGTTT+TGG 0.258121 3_3:+90719672 Msa0482990:CDS
AGAAGACATACGACCTTTAC+TGG 0.266634 3_3:-90716304 None:intergenic
AATAGAGAGGTAAACGAATT+TGG 0.271491 3_3:-90716182 None:intergenic
GGCCAGCTCATTGGTGTAGA+TGG 0.285616 3_3:-90721311 None:intergenic
TTGTTTCAGATTCCGCAATA+TGG 0.287466 3_3:+90718238 Msa0482990:intron
CGTCAGCTCCTTTCTAAACT+TGG 0.295403 3_3:+90720943 Msa0482990:CDS
TTAATTAACCTGAGGAATTT+GGG 0.303133 3_3:-90716394 None:intergenic
CCTAAATTTATGAAAGATAA+TGG 0.327102 3_3:+90718471 Msa0482990:CDS
CTCTTGATTCTAGATAATTT+GGG 0.345111 3_3:+90721196 Msa0482990:three_prime_UTR
ATTGTTAGAAAATTGTTATC+TGG 0.350355 3_3:+90716542 Msa0482990:CDS
AGACTTGTACAGTGCCTTCT+TGG 0.359607 3_3:-90720402 None:intergenic
TATCGTTGTCCACGAGGCTT+TGG 0.367464 3_3:+90718095 Msa0482990:CDS
AGATTTCAAACTTGGAAGTC+TGG 0.377840 3_3:+90716501 Msa0482990:intron
TTATCTGGAGATCTTGATCT+TGG 0.378632 3_3:+90716557 Msa0482990:CDS
CCATCGCGCTTGCAGAAAAC+AGG 0.381923 3_3:-90720338 None:intergenic
CTTGGGCACACATATGACTA+TGG 0.388474 3_3:-90720384 None:intergenic
AAGCCTCTGCGAGTTGCAAC+TGG 0.392840 3_3:+90718322 Msa0482990:CDS
TGAGATGCTTGAAAGATTAG+AGG 0.394252 3_3:+90719920 Msa0482990:CDS
TACACTGCAGATTTCAAACT+TGG 0.415322 3_3:+90716493 Msa0482990:intron
ACCATCGTTAGCTGGGTTGC+AGG 0.420563 3_3:+90720117 Msa0482990:CDS
GGGGATTGCTGATGCTATCT+TGG 0.420913 3_3:+90719603 Msa0482990:CDS
AATTGAAGAAAAGAAACTAT+AGG 0.421124 3_3:-90721167 None:intergenic
TGAGACACCCCGGTTTGGTT+GGG 0.423002 3_3:-90716068 None:intergenic
CTGAGCCAACCATCGTTAGC+TGG 0.423235 3_3:+90720109 Msa0482990:CDS
AATTAAAGACCCAACCAAAC+CGG 0.424516 3_3:+90716059 None:intergenic
ATCAAACTTCATTTGAAAGA+TGG 0.432851 3_3:-90721332 None:intergenic
TTGAAAGATGGCCAGCTCAT+TGG 0.443291 3_3:-90721320 None:intergenic
GACTTGTACAGTGCCTTCTT+GGG 0.445015 3_3:-90720401 None:intergenic
GTCAGCTCCTTTCTAAACTT+GGG 0.445359 3_3:+90720944 Msa0482990:CDS
GATCTTGATCTTGGTATTGT+CGG 0.455049 3_3:+90716566 Msa0482990:CDS
TTGAGACACCCCGGTTTGGT+TGG 0.457570 3_3:-90716069 None:intergenic
GTTGAAAGAAAATAACTTGA+AGG 0.459040 3_3:+90719648 Msa0482990:CDS
GAGGGCTATGGGGCAGTTCA+CGG 0.460141 3_3:+90719950 Msa0482990:CDS
AGAGGCACATCTGAGGGCTA+TGG 0.460886 3_3:+90719938 Msa0482990:CDS
TTCGACTGCTGACGGAGCAC+TGG 0.466865 3_3:+90718512 Msa0482990:CDS
GTCCACGAGGCTTTGGAGTA+CGG 0.469178 3_3:+90718102 Msa0482990:CDS
GATCTCTTGTCTTCTGCTGC+CGG 0.470766 3_3:-90716268 None:intergenic
AGGAAGTAGTGCAGAGGAAG+TGG 0.471067 3_3:+90720075 Msa0482990:CDS
TTGACGAGGAAACTCCTAGA+TGG 0.477208 3_3:+90720920 Msa0482990:CDS
TCGATTGAGACACCCCGGTT+TGG 0.482709 3_3:-90716073 None:intergenic
TTGTTGTGGGAGTTAAAGTA+TGG 0.483141 3_3:+90721248 Msa0482990:three_prime_UTR
AGGCTGCTCTTGTTGCAAGC+AGG 0.487061 3_3:+90719856 Msa0482990:intron
ACGTTGTTCCACTACTTACA+AGG 0.492916 3_3:-90719627 None:intergenic
TTTAACTTCAACAATTGTTG+TGG 0.494697 3_3:+90721234 Msa0482990:three_prime_UTR
TTGTCAATTGTCAGTCAAGC+AGG 0.495907 3_3:+90716350 Msa0482990:CDS
TTAACTTCAACAATTGTTGT+GGG 0.502935 3_3:+90721235 Msa0482990:three_prime_UTR
GAGGCACATCTGAGGGCTAT+GGG 0.505249 3_3:+90719939 Msa0482990:CDS
AAATCATTGATCGGACGAAA+AGG 0.506065 3_3:+90719879 Msa0482990:CDS
ATTCTAGATAATTTGGGATG+CGG 0.506135 3_3:+90721202 Msa0482990:three_prime_UTR
GAAAGGAGCTGACGCCATCT+AGG 0.514685 3_3:-90720934 None:intergenic
ATTAAAGACCCAACCAAACC+GGG 0.517060 3_3:+90716060 None:intergenic
ATGAGTCTCGGAGGAGATTG+AGG 0.524502 3_3:-90716214 None:intergenic
CAGAAGACAAGAGATCCGTC+TGG 0.525828 3_3:+90716275 Msa0482990:CDS
GTATGTTGCCCAAATTCCTC+AGG 0.527688 3_3:+90716386 Msa0482990:CDS
ACTAAAGCCCAAGTTTAGAA+AGG 0.532749 3_3:-90720951 None:intergenic
TGATAACATCTTTAGGGAGA+GGG 0.534427 3_3:-90721038 None:intergenic
GCCAGCTCATTGGTGTAGAT+GGG 0.545089 3_3:-90721310 None:intergenic
AATAACTTGAAGGAAATTGA+AGG 0.546732 3_3:+90719658 Msa0482990:CDS
TTGATAACATCTTTAGGGAG+AGG 0.551055 3_3:-90721039 None:intergenic
TGATACACTCGACCTTCTCA+AGG 0.552104 3_3:+90716326 Msa0482990:CDS
GGCTTATCTTCTGTCCATTG+AGG 0.552577 3_3:-90718304 None:intergenic
ATCTTGGACCTTGTAAGTAG+TGG 0.552901 3_3:+90719619 Msa0482990:CDS
TGAGCCAACCATCGTTAGCT+GGG 0.555529 3_3:+90720110 Msa0482990:CDS
GACTGCTGACGGAGCACTGG+AGG 0.563946 3_3:+90718515 Msa0482990:CDS
CATACAAACTGATGCAGAGG+TGG 0.567776 3_3:-90721125 None:intergenic
AGTCATATGTGTGCCCAAGA+AGG 0.572168 3_3:+90720388 Msa0482990:CDS
AATGACAACACAATCTCCTC+CGG 0.573673 3_3:+90716249 Msa0482990:CDS
AGCACTGGAGGCAGCTCCTG+CGG 0.577767 3_3:+90718527 Msa0482990:CDS
ATTCATGTGATGCAGATTGG+AGG 0.578035 3_3:+90720862 Msa0482990:intron
GCAACCCAGCTAACGATGGT+TGG 0.580333 3_3:-90720114 None:intergenic
CGTCTGGGTTTACCCAGTAA+AGG 0.581574 3_3:+90716291 Msa0482990:CDS
ACCCATCTACACCAATGAGC+TGG 0.584141 3_3:+90721309 Msa0482990:three_prime_UTR
TGAAAATGTAAATTCACTAG+AGG 0.584392 3_3:+90718267 Msa0482990:CDS
TTTCTGCAAGCGCGATGGAA+AGG 0.585463 3_3:+90720343 Msa0482990:CDS
CTCTTGTCTTCTGCTGCCGG+AGG 0.586047 3_3:-90716265 None:intergenic
TATACTCACTGAATTTGGCC+AGG 0.586920 3_3:+90716595 Msa0482990:CDS
AAGATTAGAGGCACATCTGA+GGG 0.596395 3_3:+90719932 Msa0482990:CDS
GTGATGCAGATTGGAGGCAG+CGG 0.598542 3_3:+90720868 Msa0482990:intron
GTAATTTCAACTCACCGCAA+TGG 0.599912 3_3:-90718139 None:intergenic
GTCTATACAGCAACTGAGAG+CGG 0.600820 3_3:+90720421 Msa0482990:CDS
AAGAACTTGATGATGAGTCT+CGG 0.602026 3_3:-90716226 None:intergenic
GATAACATCTTTAGGGAGAG+GGG 0.611885 3_3:-90721037 None:intergenic
GCAAGCAGGAAATCATTGAT+CGG 0.612487 3_3:+90719870 Msa0482990:CDS
AAAGATTAGAGGCACATCTG+AGG 0.618033 3_3:+90719931 Msa0482990:CDS
GAAGACATACGACCTTTACT+GGG 0.626259 3_3:-90716303 None:intergenic
AGAAGACAAGAGATCCGTCT+GGG 0.626407 3_3:+90716276 Msa0482990:CDS
ACAATTGACAATCCTTGAGA+AGG 0.631059 3_3:-90716338 None:intergenic
TGATTGTCGTTTATCCATTG+CGG 0.633490 3_3:+90718125 Msa0482990:CDS
AGATAATGGTATTAAGCATG+TGG 0.634797 3_3:+90718485 Msa0482990:CDS
CAACATACAAACTGATGCAG+AGG 0.635116 3_3:-90721128 None:intergenic
GAGGCGTAGCAGCAATAGAG+AGG 0.638994 3_3:-90716195 None:intergenic
CAGAAAACAGGACTTACTGT+GGG 0.647329 3_3:-90720326 None:intergenic
CAGGTTGTAGCAAACATGAG+AGG 0.648123 3_3:+90720055 Msa0482990:intron
AACTTGAAGGAAATTGAAGG+TGG 0.649831 3_3:+90719661 Msa0482990:CDS
GCAGAAAACAGGACTTACTG+TGG 0.653659 3_3:-90720327 None:intergenic
AATCCAGTTGCAACTCGCAG+AGG 0.653851 3_3:-90718325 None:intergenic
AGTGTTCGATTGAGACACCC+CGG 0.654360 3_3:-90716078 None:intergenic
CATGAGAGGAAGTAGTGCAG+AGG 0.654817 3_3:+90720069 Msa0482990:CDS
ATACAAACTGATGCAGAGGT+GGG 0.659693 3_3:-90721124 None:intergenic
AGGCACATCTGAGGGCTATG+GGG 0.661787 3_3:+90719940 Msa0482990:CDS
AGATCTTATCGTTGTCCACG+AGG 0.663229 3_3:+90718089 Msa0482990:CDS
ACCTGCAACCCAGCTAACGA+TGG 0.667474 3_3:-90720118 None:intergenic
CACCGTACTCCAAAGCCTCG+TGG 0.672065 3_3:-90718104 None:intergenic
CTTTACTGGGTAAACCCAGA+CGG 0.678884 3_3:-90716290 None:intergenic
ATTTGGGCAACATACTGACG+TGG 0.682664 3_3:-90716378 None:intergenic
AACTTGATGATGAGTCTCGG+AGG 0.694599 3_3:-90716223 None:intergenic
TGATGGCGAAGCTAAGTCTG+TGG 0.697484 3_3:-90716104 None:intergenic
CATTTGTTGCTCGATAACAG+AGG 0.701698 3_3:+90721096 Msa0482990:three_prime_UTR
TTAAAGACCCAACCAAACCG+GGG 0.720593 3_3:+90716061 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATTATAATGAAGAGA+AGG - chr3_3:90716439-90716458 None:intergenic 15.0%
!! AAGATAACAAAGAAATTATT+TGG - chr3_3:90716622-90716641 None:intergenic 15.0%
!!! TTTTATATGTTTCAATGTAT+GGG + chr3_3:90716666-90716685 Msa0482990:intron 15.0%
!! AAAAAAGAATCACATTAATT+GGG - chr3_3:90716754-90716773 None:intergenic 15.0%
!!! ATAAATTCTAAGAAAATAGA+AGG - chr3_3:90716987-90717006 None:intergenic 15.0%
!!! TGTTTGAATTTTAAATTTAG+CGG - chr3_3:90717604-90717623 None:intergenic 15.0%
!! ATGTTAATTGTACTAAATAT+AGG - chr3_3:90717634-90717653 None:intergenic 15.0%
!! TTAAATCAAATGATAGTTAT+TGG + chr3_3:90718645-90718664 Msa0482990:intron 15.0%
!! TAAATCAAATGATAGTTATT+GGG + chr3_3:90718646-90718665 Msa0482990:intron 15.0%
!! ATATTATCTTCAAATTTCAT+AGG + chr3_3:90718809-90718828 Msa0482990:intron 15.0%
!! GATAAAAAATATTGAGAAAA+AGG - chr3_3:90719449-90719468 None:intergenic 15.0%
!!! AATTTTCTAACAATGTCTTT+GGG - chr3_3:90716536-90716555 None:intergenic 20.0%
!! ATTGTTAGAAAATTGTTATC+TGG + chr3_3:90716542-90716561 Msa0482990:CDS 20.0%
!!! AATTTCTTTGTTATCTTTTC+TGG + chr3_3:90716625-90716644 Msa0482990:intron 20.0%
!!! ATTTCTTTGTTATCTTTTCT+GGG + chr3_3:90716626-90716645 Msa0482990:intron 20.0%
!!! CTTTTATATGTTTCAATGTA+TGG + chr3_3:90716665-90716684 Msa0482990:intron 20.0%
!! GAAAAAAGAATCACATTAAT+TGG - chr3_3:90716755-90716774 None:intergenic 20.0%
!!! ATTAATGTGATTCTTTTTTC+TGG + chr3_3:90716755-90716774 Msa0482990:intron 20.0%
!! AATTCCAAAACCAAAATTTA+TGG - chr3_3:90717180-90717199 None:intergenic 20.0%
!!! AATCGTTTTCTATAGAAAAA+AGG + chr3_3:90717470-90717489 Msa0482990:intron 20.0%
!!! GTTTGAATTTTAAATTTAGC+GGG - chr3_3:90717603-90717622 None:intergenic 20.0%
!!! GATAAAAATATTGATTCTCA+TGG - chr3_3:90718038-90718057 None:intergenic 20.0%
!! TATAACAATTATCCTTTATC+AGG + chr3_3:90718059-90718078 Msa0482990:intron 20.0%
!! ATAACAATTATCCTTTATCA+GGG + chr3_3:90718060-90718079 Msa0482990:intron 20.0%
!!! TTTTCAAATATTCCATATTG+CGG - chr3_3:90718253-90718272 None:intergenic 20.0%
!! CCATTATCTTTCATAAATTT+AGG - chr3_3:90718474-90718493 None:intergenic 20.0%
!! CCTAAATTTATGAAAGATAA+TGG + chr3_3:90718471-90718490 Msa0482990:CDS 20.0%
!! ATAGCTTAATACACTAATAA+TGG + chr3_3:90718721-90718740 Msa0482990:intron 20.0%
!! AGTCAAGAATTATAAATTGT+AGG + chr3_3:90718921-90718940 Msa0482990:intron 20.0%
!! TGAAAGATATAATAAGCTTT+AGG + chr3_3:90718980-90718999 Msa0482990:intron 20.0%
!! CCAGAAATTTATAATTAGAT+CGG - chr3_3:90719137-90719156 None:intergenic 20.0%
!!! TTTTGCATATCATATTCATA+TGG + chr3_3:90720682-90720701 Msa0482990:intron 20.0%
!! TGTAAAAAAAACTCCATAAA+TGG - chr3_3:90720989-90721008 None:intergenic 20.0%
!! AATTGAAGAAAAGAAACTAT+AGG - chr3_3:90721170-90721189 None:intergenic 20.0%
! TTAATTAACCTGAGGAATTT+GGG - chr3_3:90716397-90716416 None:intergenic 25.0%
! ATTAATTAACCTGAGGAATT+TGG - chr3_3:90716398-90716417 None:intergenic 25.0%
! GTAAGTAATTAATTAACCTG+AGG - chr3_3:90716405-90716424 None:intergenic 25.0%
!! CAATTTTCTAACAATGTCTT+TGG - chr3_3:90716537-90716556 None:intergenic 25.0%
! GCAAATGATACAAAATTACT+AGG + chr3_3:90716801-90716820 Msa0482990:intron 25.0%
! TGATACAAAATTACTAGGAA+AGG + chr3_3:90716806-90716825 Msa0482990:intron 25.0%
! GATACAAAATTACTAGGAAA+GGG + chr3_3:90716807-90716826 Msa0482990:intron 25.0%
! AAATTCTTTCAAATTTCGGA+GGG - chr3_3:90717208-90717227 None:intergenic 25.0%
! CCACAAATTCTTTCAAATTT+CGG - chr3_3:90717212-90717231 None:intergenic 25.0%
! CACAAAACAATGAAATTGAT+AGG - chr3_3:90718192-90718211 None:intergenic 25.0%
! TGAAAATGTAAATTCACTAG+AGG + chr3_3:90718267-90718286 Msa0482990:CDS 25.0%
! TAAATGTGAATCACATACAT+AGG - chr3_3:90718353-90718372 None:intergenic 25.0%
!!! ATGTTTTGAAGTTTTATCTG+TGG + chr3_3:90718377-90718396 Msa0482990:intron 25.0%
!! TTTAGAATCTGAAAACATAC+AGG - chr3_3:90718586-90718605 None:intergenic 25.0%
! AAATGATAGTTATTGGGATT+TGG + chr3_3:90718652-90718671 Msa0482990:intron 25.0%
!!! CATGGTTATCTTTGATTTTT+GGG - chr3_3:90718765-90718784 None:intergenic 25.0%
!! TCAAATCTATATTTTCTCAC+CGG + chr3_3:90719016-90719035 Msa0482990:intron 25.0%
! AGCATTGTTTGAGTAAATTA+AGG + chr3_3:90719091-90719110 Msa0482990:intron 25.0%
! CCGATCTAATTATAAATTTC+TGG + chr3_3:90719134-90719153 Msa0482990:intron 25.0%
! GAAATATCTTATATGGAAAG+AGG - chr3_3:90719418-90719437 None:intergenic 25.0%
! AAACAGGGAAATATCTTATA+TGG - chr3_3:90719425-90719444 None:intergenic 25.0%
! TATTGAGAAAAAGGTAAACA+GGG - chr3_3:90719440-90719459 None:intergenic 25.0%
! ATATTGAGAAAAAGGTAAAC+AGG - chr3_3:90719441-90719460 None:intergenic 25.0%
!! TTGTCTTTTCTCTATTTAGA+TGG + chr3_3:90719582-90719601 Msa0482990:intron 25.0%
!! TGTCTTTTCTCTATTTAGAT+GGG + chr3_3:90719583-90719602 Msa0482990:intron 25.0%
! GTTGAAAGAAAATAACTTGA+AGG + chr3_3:90719648-90719667 Msa0482990:CDS 25.0%
! AATAACTTGAAGGAAATTGA+AGG + chr3_3:90719658-90719677 Msa0482990:CDS 25.0%
!!! TGATCTGCTGTTTTTTTAAA+AGG + chr3_3:90719739-90719758 Msa0482990:intron 25.0%
!! CCATTTTCTAATGTTAAATC+CGG + chr3_3:90720032-90720051 Msa0482990:intron 25.0%
! TAGGAAAAAGAAATTAGACA+CGG + chr3_3:90720528-90720547 Msa0482990:intron 25.0%
! TATGATATGCAAAAATTGAG+AGG - chr3_3:90720676-90720695 None:intergenic 25.0%
!!! ATTCTCATACCTATTTCTTT+TGG + chr3_3:90720835-90720854 Msa0482990:intron 25.0%
!!! GGAGTTTTTTTTACAGTATA+TGG + chr3_3:90720994-90721013 Msa0482990:intron 25.0%
! TCTCTTGATTCTAGATAATT+TGG + chr3_3:90721195-90721214 Msa0482990:three_prime_UTR 25.0%
! CTCTTGATTCTAGATAATTT+GGG + chr3_3:90721196-90721215 Msa0482990:three_prime_UTR 25.0%
!! TTTAACTTCAACAATTGTTG+TGG + chr3_3:90721234-90721253 Msa0482990:three_prime_UTR 25.0%
! TTAACTTCAACAATTGTTGT+GGG + chr3_3:90721235-90721254 Msa0482990:three_prime_UTR 25.0%
! ATCAAACTTCATTTGAAAGA+TGG - chr3_3:90721335-90721354 None:intergenic 25.0%
AATAGAGAGGTAAACGAATT+TGG - chr3_3:90716185-90716204 None:intergenic 30.0%
ACAAAGAAATTATTTGGACC+TGG - chr3_3:90716616-90716635 None:intergenic 30.0%
! ATGTTTCAATGTATGGGTTA+AGG + chr3_3:90716672-90716691 Msa0482990:intron 30.0%
! TGTTTCAATGTATGGGTTAA+GGG + chr3_3:90716673-90716692 Msa0482990:intron 30.0%
AGAATCACATTAATTGGGAA+CGG - chr3_3:90716749-90716768 None:intergenic 30.0%
TGCTTCTCTGAATAAATTGA+AGG - chr3_3:90716886-90716905 None:intergenic 30.0%
!! GAAATGAAGCTATTTCTACT+AGG - chr3_3:90717016-90717035 None:intergenic 30.0%
! TTTTACCTGTGGTTAAATTG+GGG - chr3_3:90717039-90717058 None:intergenic 30.0%
! CTTTTACCTGTGGTTAAATT+GGG - chr3_3:90717040-90717059 None:intergenic 30.0%
!!! TAAAAGCCCTGCATTTTTTT+GGG + chr3_3:90717054-90717073 Msa0482990:intron 30.0%
AACATTCCCAAAAAAATGCA+GGG - chr3_3:90717063-90717082 None:intergenic 30.0%
AAACATTCCCAAAAAAATGC+AGG - chr3_3:90717064-90717083 None:intergenic 30.0%
!! TATATGTGACTTGTTACTGA+TGG + chr3_3:90717120-90717139 Msa0482990:intron 30.0%
! CAACTAGAGTCCATAAATTT+TGG + chr3_3:90717167-90717186 Msa0482990:intron 30.0%
!!! GAGTCCATAAATTTTGGTTT+TGG + chr3_3:90717173-90717192 Msa0482990:intron 30.0%
AATTCTTTCAAATTTCGGAG+GGG - chr3_3:90717207-90717226 None:intergenic 30.0%
CAAATTCTTTCAAATTTCGG+AGG - chr3_3:90717209-90717228 None:intergenic 30.0%
CCGAAATTTGAAAGAATTTG+TGG + chr3_3:90717209-90717228 Msa0482990:intron 30.0%
TCAGATATTTGGTATTTGCA+GGG - chr3_3:90717293-90717312 None:intergenic 30.0%
TTCAGATATTTGGTATTTGC+AGG - chr3_3:90717294-90717313 None:intergenic 30.0%
AGAATAAACCACCTTGAAAT+TGG + chr3_3:90717342-90717361 Msa0482990:intron 30.0%
GAATAAACCACCTTGAAATT+GGG + chr3_3:90717343-90717362 Msa0482990:intron 30.0%
AAAAAAGGAATAGCATATCC+CGG + chr3_3:90717485-90717504 Msa0482990:intron 30.0%
!!! TGCAGTTAGTTTTATTCCTT+AGG - chr3_3:90717518-90717537 None:intergenic 30.0%
AAGTTGGCATAATGGTTAAT+AGG - chr3_3:90717555-90717574 None:intergenic 30.0%
!! TTCTTTGAAACATCTATCTC+TGG + chr3_3:90717809-90717828 Msa0482990:intron 30.0%
! AGATAATGGTATTAAGCATG+TGG + chr3_3:90718485-90718504 Msa0482990:CDS 30.0%
!! GCATGGTTATCTTTGATTTT+TGG - chr3_3:90718766-90718785 None:intergenic 30.0%
CAAACAATGCTACTAAAATC+AGG - chr3_3:90719082-90719101 None:intergenic 30.0%
!!! CTCTTTTTTTCTGGTTTATG+TGG + chr3_3:90719221-90719240 Msa0482990:intron 30.0%
!!! TTTTTTTCTGGTTTATGTGG+AGG + chr3_3:90719224-90719243 Msa0482990:intron 30.0%
!!! TTTTTTCTGGTTTATGTGGA+GGG + chr3_3:90719225-90719244 Msa0482990:intron 30.0%
! GTCTTTTCTCTATTTAGATG+GGG + chr3_3:90719584-90719603 Msa0482990:intron 30.0%
! CTGATAATTGAACACTTTTC+AGG + chr3_3:90719836-90719855 Msa0482990:intron 30.0%
ACAAAGAGAAAGGAAAAAAC+TGG - chr3_3:90720011-90720030 None:intergenic 30.0%
AGAAAATGGAACAAAGAGAA+AGG - chr3_3:90720021-90720040 None:intergenic 30.0%
CCGGATTTAACATTAGAAAA+TGG - chr3_3:90720035-90720054 None:intergenic 30.0%
TTTCTATAAGCATGTGAAGA+TGG + chr3_3:90720483-90720502 Msa0482990:intron 30.0%
AGGAAAAAGAAATTAGACAC+GGG + chr3_3:90720529-90720548 Msa0482990:intron 30.0%
AAATCAAGAATCCATACAAC+TGG - chr3_3:90720582-90720601 None:intergenic 30.0%
CAAGCATGACTATAAGTTAT+TGG + chr3_3:90720647-90720666 Msa0482990:intron 30.0%
TGAATGTAGCCAAAAGAAAT+AGG - chr3_3:90720847-90720866 None:intergenic 30.0%
TCGTCAAAAATATAGGTCAA+GGG - chr3_3:90720907-90720926 None:intergenic 30.0%
AGTTTCCTCGTCAAAAATAT+AGG - chr3_3:90720914-90720933 None:intergenic 30.0%
TCATACATGTGTTCCATTTA+TGG + chr3_3:90720973-90720992 Msa0482990:three_prime_UTR 30.0%
! CTGCATTGATAACATCTTTA+GGG - chr3_3:90721047-90721066 None:intergenic 30.0%
! TCTGCATTGATAACATCTTT+AGG - chr3_3:90721048-90721067 None:intergenic 30.0%
! ATTCTAGATAATTTGGGATG+CGG + chr3_3:90721202-90721221 Msa0482990:three_prime_UTR 30.0%
!! AAGAACTTGATGATGAGTCT+CGG - chr3_3:90716229-90716248 None:intergenic 35.0%
ACAATTGACAATCCTTGAGA+AGG - chr3_3:90716341-90716360 None:intergenic 35.0%
TACACTGCAGATTTCAAACT+TGG + chr3_3:90716493-90716512 Msa0482990:intron 35.0%
AGATTTCAAACTTGGAAGTC+TGG + chr3_3:90716501-90716520 Msa0482990:intron 35.0%
TAACAATGTCTTTGGGTCTT+TGG - chr3_3:90716529-90716548 None:intergenic 35.0%
TTATCTGGAGATCTTGATCT+TGG + chr3_3:90716557-90716576 Msa0482990:CDS 35.0%
GATCTTGATCTTGGTATTGT+CGG + chr3_3:90716566-90716585 Msa0482990:CDS 35.0%
CTCGATATACTCACTGAATT+TGG + chr3_3:90716590-90716609 Msa0482990:CDS 35.0%
! GTTTCAATGTATGGGTTAAG+GGG + chr3_3:90716674-90716693 Msa0482990:intron 35.0%
CAAAGAAGACTGTGAAGAAA+CGG - chr3_3:90716928-90716947 None:intergenic 35.0%
ATATGATACTGCTGCTAATG+CGG - chr3_3:90716954-90716973 None:intergenic 35.0%
TTTACCTGTGGTTAAATTGG+GGG - chr3_3:90717038-90717057 None:intergenic 35.0%
! GCTTTTACCTGTGGTTAAAT+TGG - chr3_3:90717041-90717060 None:intergenic 35.0%
!!! GTAAAAGCCCTGCATTTTTT+TGG + chr3_3:90717053-90717072 Msa0482990:intron 35.0%
CAGTAACAAGTCACATATAG+AGG - chr3_3:90717119-90717138 None:intergenic 35.0%
ATTCTTTCAAATTTCGGAGG+GGG - chr3_3:90717206-90717225 None:intergenic 35.0%
GTGAGGCAAATTCAGATATT+TGG - chr3_3:90717304-90717323 None:intergenic 35.0%
TGTGAATAGTCACTACTTAC+TGG - chr3_3:90717689-90717708 None:intergenic 35.0%
AGGGCATACAAAAAAGATTG+TGG - chr3_3:90717953-90717972 None:intergenic 35.0%
AAAGCAAAGTTGCATGATCA+GGG - chr3_3:90717972-90717991 None:intergenic 35.0%
AAAAGCAAAGTTGCATGATC+AGG - chr3_3:90717973-90717992 None:intergenic 35.0%
CAATTGCAGAACAATGTTCT+GGG + chr3_3:90718008-90718027 Msa0482990:intron 35.0%
! TGATTGTCGTTTATCCATTG+CGG + chr3_3:90718125-90718144 Msa0482990:CDS 35.0%
TTGTTTCAGATTCCGCAATA+TGG + chr3_3:90718238-90718257 Msa0482990:intron 35.0%
GATAGTTATTGGGATTTGGA+AGG + chr3_3:90718656-90718675 Msa0482990:intron 35.0%
ACCATGCTGTTAATGTCTAA+CGG + chr3_3:90718779-90718798 Msa0482990:intron 35.0%
GAAGATACATTCTACCTTGT+TGG + chr3_3:90718842-90718861 Msa0482990:intron 35.0%
! CTACCTTGTTGGTTAATTTG+TGG + chr3_3:90718853-90718872 Msa0482990:intron 35.0%
TAGCCACAAATTAACCAACA+AGG - chr3_3:90718859-90718878 None:intergenic 35.0%
ATCGGACTTCTCAATTCAAT+GGG - chr3_3:90719119-90719138 None:intergenic 35.0%
! TTTTGTGTGTGAAGAAGTTC+TGG + chr3_3:90719183-90719202 Msa0482990:intron 35.0%
!!! TTTTTCTGGTTTATGTGGAG+GGG + chr3_3:90719226-90719245 Msa0482990:intron 35.0%
! TTGAGTCTGTGTTTTACGAT+TGG + chr3_3:90719263-90719282 Msa0482990:intron 35.0%
! TGAGTCTGTGTTTTACGATT+GGG + chr3_3:90719264-90719283 Msa0482990:intron 35.0%
AAAAGGTCAACTCCAACATA+TGG - chr3_3:90719542-90719561 None:intergenic 35.0%
AACTTGAAGGAAATTGAAGG+TGG + chr3_3:90719661-90719680 Msa0482990:CDS 35.0%
! AATTGAAGGTGGAACTGTTT+TGG + chr3_3:90719672-90719691 Msa0482990:CDS 35.0%
!!! TAAGCATACCTTGTCGTTTT+TGG + chr3_3:90719806-90719825 Msa0482990:intron 35.0%
AAATCATTGATCGGACGAAA+AGG + chr3_3:90719879-90719898 Msa0482990:CDS 35.0%
TGAGATGCTTGAAAGATTAG+AGG + chr3_3:90719920-90719939 Msa0482990:CDS 35.0%
TTTCTAATGTTAAATCCGGC+AGG + chr3_3:90720036-90720055 Msa0482990:intron 35.0%
CCTAAAATGAATTAGGGTTG+GGG - chr3_3:90720166-90720185 None:intergenic 35.0%
CCCTAAAATGAATTAGGGTT+GGG - chr3_3:90720167-90720186 None:intergenic 35.0%
! CCCAACCCTAATTCATTTTA+GGG + chr3_3:90720164-90720183 Msa0482990:intron 35.0%
! CCAACCCTAATTCATTTTAG+GGG + chr3_3:90720165-90720184 Msa0482990:intron 35.0%
TCCTCCCCTAAAATGAATTA+GGG - chr3_3:90720172-90720191 None:intergenic 35.0%
ATCCTCCCCTAAAATGAATT+AGG - chr3_3:90720173-90720192 None:intergenic 35.0%
GCAGAAAGCAAATACAGAAA+GGG - chr3_3:90720201-90720220 None:intergenic 35.0%
TGCAGAAAGCAAATACAGAA+AGG - chr3_3:90720202-90720221 None:intergenic 35.0%
GAGACTCTTAAAATTAGGAG+TGG - chr3_3:90720283-90720302 None:intergenic 35.0%
CAAGGGAGACTCTTAAAATT+AGG - chr3_3:90720288-90720307 None:intergenic 35.0%
ATGCAAAGAAACCAGTTGTA+TGG + chr3_3:90720568-90720587 Msa0482990:intron 35.0%
AACAACAACAACAACAACCA+AGG + chr3_3:90720711-90720730 Msa0482990:intron 35.0%
TACATTCATGTGATGCAGAT+TGG + chr3_3:90720859-90720878 Msa0482990:intron 35.0%
CTCGTCAAAAATATAGGTCA+AGG - chr3_3:90720908-90720927 None:intergenic 35.0%
!! CTTGACCTATATTTTTGACG+AGG + chr3_3:90720906-90720925 Msa0482990:CDS 35.0%
ACTAAAGCCCAAGTTTAGAA+AGG - chr3_3:90720954-90720973 None:intergenic 35.0%
! TGATAACATCTTTAGGGAGA+GGG - chr3_3:90721041-90721060 None:intergenic 35.0%
! TTGATAACATCTTTAGGGAG+AGG - chr3_3:90721042-90721061 None:intergenic 35.0%
TTGTTGTGGGAGTTAAAGTA+TGG + chr3_3:90721248-90721267 Msa0482990:three_prime_UTR 35.0%
AATGACAACACAATCTCCTC+CGG + chr3_3:90716249-90716268 Msa0482990:CDS 40.0%
GAAGACATACGACCTTTACT+GGG - chr3_3:90716306-90716325 None:intergenic 40.0%
AGAAGACATACGACCTTTAC+TGG - chr3_3:90716307-90716326 None:intergenic 40.0%
TTGTCAATTGTCAGTCAAGC+AGG + chr3_3:90716350-90716369 Msa0482990:CDS 40.0%
TATACTCACTGAATTTGGCC+AGG + chr3_3:90716595-90716614 Msa0482990:CDS 40.0%
ATTTCCCCCAATTTAACCAC+AGG + chr3_3:90717031-90717050 Msa0482990:intron 40.0%
AAGGTGGTTTATTCTTCGTG+TGG - chr3_3:90717337-90717356 None:intergenic 40.0%
GAAGATTCATGTTTGCGGTT+GGG - chr3_3:90717380-90717399 None:intergenic 40.0%
CATCGGAAGATTCATGTTTG+CGG - chr3_3:90717385-90717404 None:intergenic 40.0%
AATCTTCCGATGCTTTGACA+AGG + chr3_3:90717393-90717412 Msa0482990:intron 40.0%
AAACCATGATGAGCTTCAAG+TGG - chr3_3:90717427-90717446 None:intergenic 40.0%
TTATTCCTTAGGTGCAGAAC+CGG - chr3_3:90717507-90717526 None:intergenic 40.0%
! ATGTTTGATGTCGCTTCACT+GGG - chr3_3:90717579-90717598 None:intergenic 40.0%
! AATGTTTGATGTCGCTTCAC+TGG - chr3_3:90717580-90717599 None:intergenic 40.0%
ACGACTAGCATCCTCAATTT+CGG - chr3_3:90717751-90717770 None:intergenic 40.0%
ACATCTATCTCTGGTCATCA+TGG + chr3_3:90717818-90717837 Msa0482990:intron 40.0%
!! ATGCAACTTTGCTTTTCCCT+CGG + chr3_3:90717977-90717996 Msa0482990:intron 40.0%
TGCAATTGCATTTAAGCCGA+GGG - chr3_3:90717996-90718015 None:intergenic 40.0%
GCAATTGCAGAACAATGTTC+TGG + chr3_3:90718007-90718026 Msa0482990:intron 40.0%
GATCTTCATTGCCCTGATAA+AGG - chr3_3:90718074-90718093 None:intergenic 40.0%
GTAATTTCAACTCACCGCAA+TGG - chr3_3:90718142-90718161 None:intergenic 40.0%
! ATTGCGGAATCTGAAACAAC+AGG - chr3_3:90718237-90718256 None:intergenic 40.0%
AGCTAGCAAAAATGCCTCAA+TGG + chr3_3:90718290-90718309 Msa0482990:CDS 40.0%
TTTCCTTCTTACTCTTCAGC+TGG + chr3_3:90718446-90718465 Msa0482990:intron 40.0%
TTCCTTCTTACTCTTCAGCT+GGG + chr3_3:90718447-90718466 Msa0482990:intron 40.0%
ACATGGCACATAAAGCTTTC+CGG - chr3_3:90719038-90719057 None:intergenic 40.0%
TCGGACTTCTCAATTCAATG+GGG - chr3_3:90719118-90719137 None:intergenic 40.0%
GATCGGACTTCTCAATTCAA+TGG - chr3_3:90719120-90719139 None:intergenic 40.0%
!! GTGAAGAAGTTCTGGTTTCT+TGG + chr3_3:90719191-90719210 Msa0482990:intron 40.0%
!!! GGCATTGTGCTCTTTTTTTC+TGG + chr3_3:90719212-90719231 Msa0482990:intron 40.0%
!!! TTTTCTGGTTTATGTGGAGG+GGG + chr3_3:90719227-90719246 Msa0482990:intron 40.0%
ACACTAAGAGCAGAGTTCAA+TGG - chr3_3:90719305-90719324 None:intergenic 40.0%
ATCTTGGACCTTGTAAGTAG+TGG + chr3_3:90719619-90719638 Msa0482990:CDS 40.0%
ACGTTGTTCCACTACTTACA+AGG - chr3_3:90719630-90719649 None:intergenic 40.0%
!!! TGGAACTGTTTTGGAAAGTC+AGG + chr3_3:90719681-90719700 Msa0482990:CDS 40.0%
ACAGCAGATCATGCTAGTTA+GGG - chr3_3:90719730-90719749 None:intergenic 40.0%
AACAGCAGATCATGCTAGTT+AGG - chr3_3:90719731-90719750 None:intergenic 40.0%
!!! CTGTTTTTTTAAAAGGCGCC+TGG + chr3_3:90719746-90719765 Msa0482990:intron 40.0%
GAGTGAAACCAAAAACGACA+AGG - chr3_3:90719817-90719836 None:intergenic 40.0%
GCAAGCAGGAAATCATTGAT+CGG + chr3_3:90719870-90719889 Msa0482990:CDS 40.0%
! AAAGATTAGAGGCACATCTG+AGG + chr3_3:90719931-90719950 Msa0482990:CDS 40.0%
! AAGATTAGAGGCACATCTGA+GGG + chr3_3:90719932-90719951 Msa0482990:CDS 40.0%
GAGAAAGGAAAAAACTGGTG+AGG - chr3_3:90720006-90720025 None:intergenic 40.0%
! CCCCAACCCTAATTCATTTT+AGG + chr3_3:90720163-90720182 Msa0482990:intron 40.0%
CCCCTAAAATGAATTAGGGT+TGG - chr3_3:90720168-90720187 None:intergenic 40.0%
!! ACCCTAATTCATTTTAGGGG+AGG + chr3_3:90720168-90720187 Msa0482990:intron 40.0%
CTACTCACTATCACAATGCA+TGG - chr3_3:90720244-90720263 None:intergenic 40.0%
TCCCTTGATTGTCTATCTAC+AGG + chr3_3:90720301-90720320 Msa0482990:intron 40.0%
CCCTGTAGATAGACAATCAA+GGG - chr3_3:90720305-90720324 None:intergenic 40.0%
CCCTTGATTGTCTATCTACA+GGG + chr3_3:90720302-90720321 Msa0482990:intron 40.0%
TCCCTGTAGATAGACAATCA+AGG - chr3_3:90720306-90720325 None:intergenic 40.0%
CAGAAAACAGGACTTACTGT+GGG - chr3_3:90720329-90720348 None:intergenic 40.0%
TGAAGATGGTTGTGAGCTAA+TGG + chr3_3:90720497-90720516 Msa0482990:intron 40.0%
GAAGATGGTTGTGAGCTAAT+GGG + chr3_3:90720498-90720517 Msa0482990:intron 40.0%
AAGATGGTTGTGAGCTAATG+GGG + chr3_3:90720499-90720518 Msa0482990:intron 40.0%
ATTAGACACGGGTGTTTGAA+TGG + chr3_3:90720540-90720559 Msa0482990:intron 40.0%
TTAGACACGGGTGTTTGAAT+GGG + chr3_3:90720541-90720560 Msa0482990:intron 40.0%
ATTCATGTGATGCAGATTGG+AGG + chr3_3:90720862-90720881 Msa0482990:intron 40.0%
GTCAGCTCCTTTCTAAACTT+GGG + chr3_3:90720944-90720963 Msa0482990:CDS 40.0%
! GATAACATCTTTAGGGAGAG+GGG - chr3_3:90721040-90721059 None:intergenic 40.0%
! CATTTGTTGCTCGATAACAG+AGG + chr3_3:90721096-90721115 Msa0482990:three_prime_UTR 40.0%
ATACAAACTGATGCAGAGGT+GGG - chr3_3:90721127-90721146 None:intergenic 40.0%
CAACATACAAACTGATGCAG+AGG - chr3_3:90721131-90721150 None:intergenic 40.0%
!! AACTTGATGATGAGTCTCGG+AGG - chr3_3:90716226-90716245 None:intergenic 45.0%
AGAAGACAAGAGATCCGTCT+GGG + chr3_3:90716276-90716295 Msa0482990:CDS 45.0%
CTTTACTGGGTAAACCCAGA+CGG - chr3_3:90716293-90716312 None:intergenic 45.0%
TGATACACTCGACCTTCTCA+AGG + chr3_3:90716326-90716345 Msa0482990:CDS 45.0%
ATTTGGGCAACATACTGACG+TGG - chr3_3:90716381-90716400 None:intergenic 45.0%
GTATGTTGCCCAAATTCCTC+AGG + chr3_3:90716386-90716405 Msa0482990:CDS 45.0%
! CAATGTATGGGTTAAGGGGA+AGG + chr3_3:90716678-90716697 Msa0482990:intron 45.0%
GAAGGAGGAGATTCATAGCA+GGG + chr3_3:90716696-90716715 Msa0482990:intron 45.0%
TACATAGCCTACGCTACATG+TGG + chr3_3:90716779-90716798 Msa0482990:intron 45.0%
TCATTTGCCACATGTAGCGT+AGG - chr3_3:90716789-90716808 None:intergenic 45.0%
GTGAAGAAACGGAAACGAGA+AGG - chr3_3:90716917-90716936 None:intergenic 45.0%
! AAATGCAGGGCTTTTACCTG+TGG - chr3_3:90717050-90717069 None:intergenic 45.0%
!! CGTGTGGTTCTAAGATAGTG+AGG - chr3_3:90717321-90717340 None:intergenic 45.0%
CTAGAGGACTCCCAATTTCA+AGG - chr3_3:90717356-90717375 None:intergenic 45.0%
GGAAGATTCATGTTTGCGGT+TGG - chr3_3:90717381-90717400 None:intergenic 45.0%
TTACCGCCTTGTCAAAGCAT+CGG - chr3_3:90717402-90717421 None:intergenic 45.0%
ACTCCACTTGAAGCTCATCA+TGG + chr3_3:90717421-90717440 Msa0482990:intron 45.0%
TATTCCTTAGGTGCAGAACC+GGG - chr3_3:90717506-90717525 None:intergenic 45.0%
CACTGGGAAAGTTGGCATAA+TGG - chr3_3:90717563-90717582 None:intergenic 45.0%
! CACTACTTACTGGTCTCAGT+AGG - chr3_3:90717679-90717698 None:intergenic 45.0%
CTCTGATGAGTCCGAAATTG+AGG + chr3_3:90717737-90717756 Msa0482990:intron 45.0%
TTGTGTGCTTTAGCCCTGAT+CGG + chr3_3:90717877-90717896 Msa0482990:intron 45.0%
CTGCAATTGCATTTAAGCCG+AGG - chr3_3:90717997-90718016 None:intergenic 45.0%
AGATCTTATCGTTGTCCACG+AGG + chr3_3:90718089-90718108 Msa0482990:CDS 45.0%
GGCTTATCTTCTGTCCATTG+AGG - chr3_3:90718307-90718326 None:intergenic 45.0%
CAAACACTATCTCTTACCGC+AGG - chr3_3:90718546-90718565 None:intergenic 45.0%
GCCGTTAGACATTAACAGCA+TGG - chr3_3:90718783-90718802 None:intergenic 45.0%
GCTTTATGTGCCATGTTGAC+CGG + chr3_3:90719042-90719061 Msa0482990:intron 45.0%
TTCACAAATGCCGGTCAACA+TGG - chr3_3:90719055-90719074 None:intergenic 45.0%
TCAGGAACGTTCACAAATGC+CGG - chr3_3:90719064-90719083 None:intergenic 45.0%
!! TTTCTGGTTTATGTGGAGGG+GGG + chr3_3:90719228-90719247 Msa0482990:intron 45.0%
! TGTTTTACGATTGGGTCCCA+AGG + chr3_3:90719272-90719291 Msa0482990:intron 45.0%
CAGCATCAATGAGATGGTGA+CGG - chr3_3:90719516-90719535 None:intergenic 45.0%
TTGATGCTGCTGCCATATGT+TGG + chr3_3:90719527-90719546 Msa0482990:intron 45.0%
! CATGAGAAGCAGCATTTTCC+AGG - chr3_3:90719767-90719786 None:intergenic 45.0%
! TGCTGCTTCTCATGTCTTGT+TGG + chr3_3:90719773-90719792 Msa0482990:intron 45.0%
AAAAAACTGGTGAGGAGACG+AGG - chr3_3:90719998-90720017 None:intergenic 45.0%
! TCATGTTTGCTACAACCTGC+CGG - chr3_3:90720054-90720073 None:intergenic 45.0%
CAGGTTGTAGCAAACATGAG+AGG + chr3_3:90720055-90720074 Msa0482990:intron 45.0%
GCAGAAAACAGGACTTACTG+TGG - chr3_3:90720330-90720349 None:intergenic 45.0%
CTTGGGCACACATATGACTA+TGG - chr3_3:90720387-90720406 None:intergenic 45.0%
AGTCATATGTGTGCCCAAGA+AGG + chr3_3:90720388-90720407 Msa0482990:CDS 45.0%
GACTTGTACAGTGCCTTCTT+GGG - chr3_3:90720404-90720423 None:intergenic 45.0%
AGACTTGTACAGTGCCTTCT+TGG - chr3_3:90720405-90720424 None:intergenic 45.0%
GTCTATACAGCAACTGAGAG+CGG + chr3_3:90720421-90720440 Msa0482990:CDS 45.0%
TGAGCTAATGGGGCTAACTT+AGG + chr3_3:90720509-90720528 Msa0482990:intron 45.0%
CAAGGCTTATCCCACTAAGT+GGG + chr3_3:90720729-90720748 Msa0482990:intron 45.0%
AAGGCTTATCCCACTAAGTG+GGG + chr3_3:90720730-90720749 Msa0482990:intron 45.0%
TTGACGAGGAAACTCCTAGA+TGG + chr3_3:90720920-90720939 Msa0482990:CDS 45.0%
CGTCAGCTCCTTTCTAAACT+TGG + chr3_3:90720943-90720962 Msa0482990:CDS 45.0%
CATACAAACTGATGCAGAGG+TGG - chr3_3:90721128-90721147 None:intergenic 45.0%
TTGAAAGATGGCCAGCTCAT+TGG - chr3_3:90721323-90721342 None:intergenic 45.0%
AGTGTTCGATTGAGACACCC+CGG - chr3_3:90716081-90716100 None:intergenic 50.0%
! TGATGGCGAAGCTAAGTCTG+TGG - chr3_3:90716107-90716126 None:intergenic 50.0%
ATGAGTCTCGGAGGAGATTG+AGG - chr3_3:90716217-90716236 None:intergenic 50.0%
GATCTCTTGTCTTCTGCTGC+CGG - chr3_3:90716271-90716290 None:intergenic 50.0%
CAGAAGACAAGAGATCCGTC+TGG + chr3_3:90716275-90716294 Msa0482990:CDS 50.0%
CGTCTGGGTTTACCCAGTAA+AGG + chr3_3:90716291-90716310 Msa0482990:CDS 50.0%
! TGTATGGGTTAAGGGGAAGG+AGG + chr3_3:90716681-90716700 Msa0482990:intron 50.0%
GGAAGGAGGAGATTCATAGC+AGG + chr3_3:90716695-90716714 Msa0482990:intron 50.0%
! GGCTATAGCATCTGAGACGT+CGG - chr3_3:90717098-90717117 None:intergenic 50.0%
GAGGACTCCCAATTTCAAGG+TGG - chr3_3:90717353-90717372 None:intergenic 50.0%
ATGTTTGCGGTTGGGTCTAG+AGG - chr3_3:90717372-90717391 None:intergenic 50.0%
CTTCCGATGCTTTGACAAGG+CGG + chr3_3:90717396-90717415 Msa0482990:intron 50.0%
ATATCCCGGTTCTGCACCTA+AGG + chr3_3:90717499-90717518 Msa0482990:intron 50.0%
! TGTCGCTTCACTGGGAAAGT+TGG - chr3_3:90717571-90717590 None:intergenic 50.0%
TTCGGACTCATCAGAGCTGT+GGG - chr3_3:90717733-90717752 None:intergenic 50.0%
TTTCGGACTCATCAGAGCTG+TGG - chr3_3:90717734-90717753 None:intergenic 50.0%
TATCGTTGTCCACGAGGCTT+TGG + chr3_3:90718095-90718114 Msa0482990:CDS 50.0%
AATCCAGTTGCAACTCGCAG+AGG - chr3_3:90718328-90718347 None:intergenic 50.0%
GACCCAGCTGAAGAGTAAGA+AGG - chr3_3:90718452-90718471 None:intergenic 50.0%
! GTGGCATTTTCGACTGCTGA+CGG + chr3_3:90718504-90718523 Msa0482990:CDS 50.0%
GTTCAATGGCAACAGGCCTT+GGG - chr3_3:90719291-90719310 None:intergenic 50.0%
AGTTCAATGGCAACAGGCCT+TGG - chr3_3:90719292-90719311 None:intergenic 50.0%
GAGCAGAGTTCAATGGCAAC+AGG - chr3_3:90719298-90719317 None:intergenic 50.0%
TGGCAGCAGCATCAATGAGA+TGG - chr3_3:90719522-90719541 None:intergenic 50.0%
GGGGATTGCTGATGCTATCT+TGG + chr3_3:90719603-90719622 Msa0482990:CDS 50.0%
CATGAGAGGAAGTAGTGCAG+AGG + chr3_3:90720069-90720088 Msa0482990:CDS 50.0%
AGGAAGTAGTGCAGAGGAAG+TGG + chr3_3:90720075-90720094 Msa0482990:CDS 50.0%
TGAGCCAACCATCGTTAGCT+GGG + chr3_3:90720110-90720129 Msa0482990:CDS 50.0%
CTGGGTTGCAGGTGTGATAT+GGG + chr3_3:90720128-90720147 Msa0482990:intron 50.0%
TTTCTGCAAGCGCGATGGAA+AGG + chr3_3:90720343-90720362 Msa0482990:CDS 50.0%
CCACTTAGTGGGATAAGCCT+TGG - chr3_3:90720731-90720750 None:intergenic 50.0%
CCAAGGCTTATCCCACTAAG+TGG + chr3_3:90720728-90720747 Msa0482990:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr3_3:90720734-90720753 Msa0482990:intron 50.0%
AAGTGGGGTCGGCATTCAAA+TGG + chr3_3:90720745-90720764 Msa0482990:intron 50.0%
ACCCATCTACACCAATGAGC+TGG + chr3_3:90721309-90721328 Msa0482990:three_prime_UTR 50.0%
GCCAGCTCATTGGTGTAGAT+GGG - chr3_3:90721313-90721332 None:intergenic 50.0%
TCGATTGAGACACCCCGGTT+TGG - chr3_3:90716076-90716095 None:intergenic 55.0%
AGGAGGAACGACGCTGATGA+TGG - chr3_3:90716124-90716143 None:intergenic 55.0%
GAGGCGTAGCAGCAATAGAG+AGG - chr3_3:90716198-90716217 None:intergenic 55.0%
TGTGCTTTAGCCCTGATCGG+CGG + chr3_3:90717880-90717899 Msa0482990:intron 55.0%
GCAAGTAGAACCGCCGATCA+GGG - chr3_3:90717893-90717912 None:intergenic 55.0%
!! GTCCACGAGGCTTTGGAGTA+CGG + chr3_3:90718102-90718121 Msa0482990:CDS 55.0%
AAGCCTCTGCGAGTTGCAAC+TGG + chr3_3:90718322-90718341 Msa0482990:CDS 55.0%
AGGCTGCTCTTGTTGCAAGC+AGG + chr3_3:90719856-90719875 Msa0482990:intron 55.0%
! AGAGGCACATCTGAGGGCTA+TGG + chr3_3:90719938-90719957 Msa0482990:CDS 55.0%
GAGGCACATCTGAGGGCTAT+GGG + chr3_3:90719939-90719958 Msa0482990:CDS 55.0%
AGGCACATCTGAGGGCTATG+GGG + chr3_3:90719940-90719959 Msa0482990:CDS 55.0%
CTGAGCCAACCATCGTTAGC+TGG + chr3_3:90720109-90720128 Msa0482990:CDS 55.0%
GCAACCCAGCTAACGATGGT+TGG - chr3_3:90720117-90720136 None:intergenic 55.0%
ACCATCGTTAGCTGGGTTGC+AGG + chr3_3:90720117-90720136 Msa0482990:CDS 55.0%
ACCTGCAACCCAGCTAACGA+TGG - chr3_3:90720121-90720140 None:intergenic 55.0%
GCTGGGTTGCAGGTGTGATA+TGG + chr3_3:90720127-90720146 Msa0482990:intron 55.0%
CCATCGCGCTTGCAGAAAAC+AGG - chr3_3:90720341-90720360 None:intergenic 55.0%
! CCTGTTTTCTGCAAGCGCGA+TGG + chr3_3:90720338-90720357 Msa0482990:CDS 55.0%
GTCATGCTTGCCATCGCCAA+GGG - chr3_3:90720637-90720656 None:intergenic 55.0%
AGTCATGCTTGCCATCGCCA+AGG - chr3_3:90720638-90720657 None:intergenic 55.0%
GAATGCCGACCCCACTTAGT+GGG - chr3_3:90720742-90720761 None:intergenic 55.0%
TGAATGCCGACCCCACTTAG+TGG - chr3_3:90720743-90720762 None:intergenic 55.0%
GTGATGCAGATTGGAGGCAG+CGG + chr3_3:90720868-90720887 Msa0482990:intron 55.0%
GAAAGGAGCTGACGCCATCT+AGG - chr3_3:90720937-90720956 None:intergenic 55.0%
GGCCAGCTCATTGGTGTAGA+TGG - chr3_3:90721314-90721333 None:intergenic 55.0%
CTCTTGTCTTCTGCTGCCGG+AGG - chr3_3:90716268-90716287 None:intergenic 60.0%
CGCAAGTAGAACCGCCGATC+AGG - chr3_3:90717894-90717913 None:intergenic 60.0%
CACCGTACTCCAAAGCCTCG+TGG - chr3_3:90718107-90718126 None:intergenic 60.0%
TTCGACTGCTGACGGAGCAC+TGG + chr3_3:90718512-90718531 Msa0482990:CDS 60.0%
GAGGGCTATGGGGCAGTTCA+CGG + chr3_3:90719950-90719969 Msa0482990:CDS 60.0%
ACTCCCTGACCTGTTGCCCT+TGG + chr3_3:90720618-90720637 Msa0482990:intron 60.0%
TCGCCAAGGGCAACAGGTCA+GGG - chr3_3:90720624-90720643 None:intergenic 60.0%
ATCGCCAAGGGCAACAGGTC+AGG - chr3_3:90720625-90720644 None:intergenic 60.0%
TGACCTGTTGCCCTTGGCGA+TGG + chr3_3:90720624-90720643 Msa0482990:intron 60.0%
TTGCCATCGCCAAGGGCAAC+AGG - chr3_3:90720630-90720649 None:intergenic 60.0%
!! GACTGCTGACGGAGCACTGG+AGG + chr3_3:90718515-90718534 Msa0482990:CDS 65.0%
! AGCACTGGAGGCAGCTCCTG+CGG + chr3_3:90718527-90718546 Msa0482990:CDS 65.0%
GCTGCTGCTGCTGCTGCAGG+AGG - chr3_3:90716141-90716160 None:intergenic 70.0%
GCTGCTGCTGCTGCTGCTGC+AGG - chr3_3:90716144-90716163 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 90716071 90721362 90716071 ID=Msa0482990;Name=Msa0482990
chr3_3 mRNA 90716071 90721362 90716071 ID=Msa0482990-mRNA-1;Parent=Msa0482990;Name=Msa0482990-mRNA-1;_AED=0.15;_eAED=0.15;_QI=74|1|1|1|0.81|0.66|12|362|375
chr3_3 exon 90716071 90716127 90716071 ID=Msa0482990-mRNA-1:exon:26450;Parent=Msa0482990-mRNA-1
chr3_3 exon 90716148 90716407 90716148 ID=Msa0482990-mRNA-1:exon:26451;Parent=Msa0482990-mRNA-1
chr3_3 exon 90716503 90716616 90716503 ID=Msa0482990-mRNA-1:exon:26452;Parent=Msa0482990-mRNA-1
chr3_3 exon 90718081 90718146 90718081 ID=Msa0482990-mRNA-1:exon:26453;Parent=Msa0482990-mRNA-1
chr3_3 exon 90718247 90718354 90718247 ID=Msa0482990-mRNA-1:exon:26454;Parent=Msa0482990-mRNA-1
chr3_3 exon 90718465 90718548 90718465 ID=Msa0482990-mRNA-1:exon:26455;Parent=Msa0482990-mRNA-1
chr3_3 exon 90719601 90719702 90719601 ID=Msa0482990-mRNA-1:exon:26456;Parent=Msa0482990-mRNA-1
chr3_3 exon 90719858 90719971 90719858 ID=Msa0482990-mRNA-1:exon:26457;Parent=Msa0482990-mRNA-1
chr3_3 exon 90720058 90720138 90720058 ID=Msa0482990-mRNA-1:exon:26458;Parent=Msa0482990-mRNA-1
chr3_3 exon 90720323 90720442 90720323 ID=Msa0482990-mRNA-1:exon:26459;Parent=Msa0482990-mRNA-1
chr3_3 exon 90720877 90721004 90720877 ID=Msa0482990-mRNA-1:exon:26460;Parent=Msa0482990-mRNA-1
chr3_3 exon 90721033 90721362 90721033 ID=Msa0482990-mRNA-1:exon:26461;Parent=Msa0482990-mRNA-1
chr3_3 five_prime_UTR 90716071 90716127 90716071 ID=Msa0482990-mRNA-1:five_prime_utr;Parent=Msa0482990-mRNA-1
chr3_3 five_prime_UTR 90716148 90716164 90716148 ID=Msa0482990-mRNA-1:five_prime_utr;Parent=Msa0482990-mRNA-1
chr3_3 CDS 90716165 90716407 90716165 ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1
chr3_3 CDS 90716503 90716616 90716503 ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1
chr3_3 CDS 90718081 90718146 90718081 ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1
chr3_3 CDS 90718247 90718354 90718247 ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1
chr3_3 CDS 90718465 90718548 90718465 ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1
chr3_3 CDS 90719601 90719702 90719601 ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1
chr3_3 CDS 90719858 90719971 90719858 ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1
chr3_3 CDS 90720058 90720138 90720058 ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1
chr3_3 CDS 90720323 90720442 90720323 ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1
chr3_3 CDS 90720877 90720972 90720877 ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1
chr3_3 three_prime_UTR 90720973 90721004 90720973 ID=Msa0482990-mRNA-1:three_prime_utr;Parent=Msa0482990-mRNA-1
chr3_3 three_prime_UTR 90721033 90721362 90721033 ID=Msa0482990-mRNA-1:three_prime_utr;Parent=Msa0482990-mRNA-1
Gene Sequence

>Msa0482990

ATGTTGACGATGATGAGCCAAATTCGTTTACCTCTCTATTGCTGCTACGCCTCAATCTCCTCCGAGACTCATCATCAAGTTCTTAATGACAACACAATCTCCTCCGGCAGCAGAAGACAAGAGATCCGTCTGGGTTTACCCAGTAAAGGTCGTATGTCTTCTGATACACTCGACCTTCTCAAGGATTGTCAATTGTCAGTCAAGCAGGTCAATCCACGTCAGTATGTTGCCCAAATTCCTCAGATTTCAAACTTGGAAGTCTGGTTCCAAAGACCCAAAGACATTGTTAGAAAATTGTTATCTGGAGATCTTGATCTTGGTATTGTCGGACTCGATATACTCACTGAATTTGGCCAGGGCAATGAAGATCTTATCGTTGTCCACGAGGCTTTGGAGTACGGTGATTGTCGTTTATCCATTGCGATTCCGCAATATGGAATATTTGAAAATGTAAATTCACTAGAGGAGCTAGCAAAAATGCCTCAATGGACAGAAGATAAGCCTCTGCGAGTTGCAACTGGATTCACCTATCTGGGTCCTAAATTTATGAAAGATAATGGTATTAAGCATGTGGCATTTTCGACTGCTGACGGAGCACTGGAGGCAGCTCCTGCGATGGGGATTGCTGATGCTATCTTGGACCTTGTAAGTAGTGGAACAACGTTGAAAGAAAATAACTTGAAGGAAATTGAAGGTGGAACTGTTTTGGAAAGTCAGGCTGCTCTTGTTGCAAGCAGGAAATCATTGATCGGACGAAAAGGAGTACTTGAAACAACTCATGAGATGCTTGAAAGATTAGAGGCACATCTGAGGGCTATGGGGCAGTTCACGGTTGTAGCAAACATGAGAGGAAGTAGTGCAGAGGAAGTGGCTGAGAGAGTACTGAGCCAACCATCGTTAGCTGGGTTGCAGGGACCCACAGTAAGTCCTGTTTTCTGCAAGCGCGATGGAAAGGTATCAGCAGACTACTATGCCATAGTCATATGTGTGCCCAAGAAGGCACTGTACAAGTCTATACAGCAACTGAGAGCGATTGGAGGCAGCGGAGTTCTTGTATCACCCTTGACCTATATTTTTGACGAGGAAACTCCTAGATGGCGTCAGCTCCTTTCTAAACTTGGGCTTTAG

Protein sequence

>Msa0482990

MLTMMSQIRLPLYCCYASISSETHHQVLNDNTISSGSRRQEIRLGLPSKGRMSSDTLDLLKDCQLSVKQVNPRQYVAQIPQISNLEVWFQRPKDIVRKLLSGDLDLGIVGLDILTEFGQGNEDLIVVHEALEYGDCRLSIAIPQYGIFENVNSLEELAKMPQWTEDKPLRVATGFTYLGPKFMKDNGIKHVAFSTADGALEAAPAMGIADAILDLVSSGTTLKENNLKEIEGGTVLESQAALVASRKSLIGRKGVLETTHEMLERLEAHLRAMGQFTVVANMRGSSAEEVAERVLSQPSLAGLQGPTVSPVFCKRDGKVSADYYAIVICVPKKALYKSIQQLRAIGGSGVLVSPLTYIFDEETPRWRQLLSKLGL*