Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0482990 | XP_003610300.1 | 96.552 | 377 | 7 | 2 | 1 | 375 | 1 | 373 | 0.0 | 744 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0482990 | sp|Q8GSJ1|HIS1B_ARATH | 81.894 | 359 | 64 | 1 | 18 | 375 | 55 | 413 | 0.0 | 612 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0482990 | G7JFL4 | 96.552 | 377 | 7 | 2 | 1 | 375 | 1 | 373 | 0.0 | 744 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0482990 | Msa0703760 | 0.805782 | 1.130492e-49 | -8.615850e-47 |
Msa0482990 | Msa0801490 | 0.801614 | 8.285755e-49 | -8.615850e-47 |
Msa0482990 | Msa1131440 | 0.910119 | 2.675072e-82 | -8.615850e-47 |
Msa0482990 | Msa1264470 | 0.921213 | 4.770004e-88 | -8.615850e-47 |
Msa0482990 | Msa1397470 | 0.889673 | 1.962456e-73 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0482990 | MtrunA17_Chr4g0073831 | 96.552 | 377 | 7 | 2 | 1 | 375 | 1 | 373 | 0.0 | 744 |
Msa0482990 | MtrunA17_Chr2g0277331 | 77.913 | 412 | 35 | 6 | 3 | 375 | 5 | 399 | 0.0 | 614 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0482990 | AT1G09795.1 | 81.894 | 359 | 64 | 1 | 18 | 375 | 55 | 413 | 0.0 | 612 |
Msa0482990 | AT1G58080.1 | 82.789 | 337 | 58 | 0 | 39 | 375 | 75 | 411 | 0.0 | 592 |
Find 117 sgRNAs with CRISPR-Local
Find 370 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTTGATTCTAGATAATT+TGG | 0.073437 | 3_3:+90721195 | Msa0482990:three_prime_UTR |
ATTAATTAACCTGAGGAATT+TGG | 0.106128 | 3_3:-90716395 | None:intergenic |
TCATACATGTGTTCCATTTA+TGG | 0.107480 | 3_3:+90720973 | Msa0482990:three_prime_UTR |
CCATTATCTTTCATAAATTT+AGG | 0.185647 | 3_3:-90718471 | None:intergenic |
TAACAATGTCTTTGGGTCTT+TGG | 0.196414 | 3_3:-90716526 | None:intergenic |
TCTGCATTGATAACATCTTT+AGG | 0.240128 | 3_3:-90721045 | None:intergenic |
CTCGATATACTCACTGAATT+TGG | 0.245090 | 3_3:+90716590 | Msa0482990:CDS |
CTGCATTGATAACATCTTTA+GGG | 0.247183 | 3_3:-90721044 | None:intergenic |
AATTGAAGGTGGAACTGTTT+TGG | 0.258121 | 3_3:+90719672 | Msa0482990:CDS |
AGAAGACATACGACCTTTAC+TGG | 0.266634 | 3_3:-90716304 | None:intergenic |
AATAGAGAGGTAAACGAATT+TGG | 0.271491 | 3_3:-90716182 | None:intergenic |
GGCCAGCTCATTGGTGTAGA+TGG | 0.285616 | 3_3:-90721311 | None:intergenic |
TTGTTTCAGATTCCGCAATA+TGG | 0.287466 | 3_3:+90718238 | Msa0482990:intron |
CGTCAGCTCCTTTCTAAACT+TGG | 0.295403 | 3_3:+90720943 | Msa0482990:CDS |
TTAATTAACCTGAGGAATTT+GGG | 0.303133 | 3_3:-90716394 | None:intergenic |
CCTAAATTTATGAAAGATAA+TGG | 0.327102 | 3_3:+90718471 | Msa0482990:CDS |
CTCTTGATTCTAGATAATTT+GGG | 0.345111 | 3_3:+90721196 | Msa0482990:three_prime_UTR |
ATTGTTAGAAAATTGTTATC+TGG | 0.350355 | 3_3:+90716542 | Msa0482990:CDS |
AGACTTGTACAGTGCCTTCT+TGG | 0.359607 | 3_3:-90720402 | None:intergenic |
TATCGTTGTCCACGAGGCTT+TGG | 0.367464 | 3_3:+90718095 | Msa0482990:CDS |
AGATTTCAAACTTGGAAGTC+TGG | 0.377840 | 3_3:+90716501 | Msa0482990:intron |
TTATCTGGAGATCTTGATCT+TGG | 0.378632 | 3_3:+90716557 | Msa0482990:CDS |
CCATCGCGCTTGCAGAAAAC+AGG | 0.381923 | 3_3:-90720338 | None:intergenic |
CTTGGGCACACATATGACTA+TGG | 0.388474 | 3_3:-90720384 | None:intergenic |
AAGCCTCTGCGAGTTGCAAC+TGG | 0.392840 | 3_3:+90718322 | Msa0482990:CDS |
TGAGATGCTTGAAAGATTAG+AGG | 0.394252 | 3_3:+90719920 | Msa0482990:CDS |
TACACTGCAGATTTCAAACT+TGG | 0.415322 | 3_3:+90716493 | Msa0482990:intron |
ACCATCGTTAGCTGGGTTGC+AGG | 0.420563 | 3_3:+90720117 | Msa0482990:CDS |
GGGGATTGCTGATGCTATCT+TGG | 0.420913 | 3_3:+90719603 | Msa0482990:CDS |
AATTGAAGAAAAGAAACTAT+AGG | 0.421124 | 3_3:-90721167 | None:intergenic |
TGAGACACCCCGGTTTGGTT+GGG | 0.423002 | 3_3:-90716068 | None:intergenic |
CTGAGCCAACCATCGTTAGC+TGG | 0.423235 | 3_3:+90720109 | Msa0482990:CDS |
AATTAAAGACCCAACCAAAC+CGG | 0.424516 | 3_3:+90716059 | None:intergenic |
ATCAAACTTCATTTGAAAGA+TGG | 0.432851 | 3_3:-90721332 | None:intergenic |
TTGAAAGATGGCCAGCTCAT+TGG | 0.443291 | 3_3:-90721320 | None:intergenic |
GACTTGTACAGTGCCTTCTT+GGG | 0.445015 | 3_3:-90720401 | None:intergenic |
GTCAGCTCCTTTCTAAACTT+GGG | 0.445359 | 3_3:+90720944 | Msa0482990:CDS |
GATCTTGATCTTGGTATTGT+CGG | 0.455049 | 3_3:+90716566 | Msa0482990:CDS |
TTGAGACACCCCGGTTTGGT+TGG | 0.457570 | 3_3:-90716069 | None:intergenic |
GTTGAAAGAAAATAACTTGA+AGG | 0.459040 | 3_3:+90719648 | Msa0482990:CDS |
GAGGGCTATGGGGCAGTTCA+CGG | 0.460141 | 3_3:+90719950 | Msa0482990:CDS |
AGAGGCACATCTGAGGGCTA+TGG | 0.460886 | 3_3:+90719938 | Msa0482990:CDS |
TTCGACTGCTGACGGAGCAC+TGG | 0.466865 | 3_3:+90718512 | Msa0482990:CDS |
GTCCACGAGGCTTTGGAGTA+CGG | 0.469178 | 3_3:+90718102 | Msa0482990:CDS |
GATCTCTTGTCTTCTGCTGC+CGG | 0.470766 | 3_3:-90716268 | None:intergenic |
AGGAAGTAGTGCAGAGGAAG+TGG | 0.471067 | 3_3:+90720075 | Msa0482990:CDS |
TTGACGAGGAAACTCCTAGA+TGG | 0.477208 | 3_3:+90720920 | Msa0482990:CDS |
TCGATTGAGACACCCCGGTT+TGG | 0.482709 | 3_3:-90716073 | None:intergenic |
TTGTTGTGGGAGTTAAAGTA+TGG | 0.483141 | 3_3:+90721248 | Msa0482990:three_prime_UTR |
AGGCTGCTCTTGTTGCAAGC+AGG | 0.487061 | 3_3:+90719856 | Msa0482990:intron |
ACGTTGTTCCACTACTTACA+AGG | 0.492916 | 3_3:-90719627 | None:intergenic |
TTTAACTTCAACAATTGTTG+TGG | 0.494697 | 3_3:+90721234 | Msa0482990:three_prime_UTR |
TTGTCAATTGTCAGTCAAGC+AGG | 0.495907 | 3_3:+90716350 | Msa0482990:CDS |
TTAACTTCAACAATTGTTGT+GGG | 0.502935 | 3_3:+90721235 | Msa0482990:three_prime_UTR |
GAGGCACATCTGAGGGCTAT+GGG | 0.505249 | 3_3:+90719939 | Msa0482990:CDS |
AAATCATTGATCGGACGAAA+AGG | 0.506065 | 3_3:+90719879 | Msa0482990:CDS |
ATTCTAGATAATTTGGGATG+CGG | 0.506135 | 3_3:+90721202 | Msa0482990:three_prime_UTR |
GAAAGGAGCTGACGCCATCT+AGG | 0.514685 | 3_3:-90720934 | None:intergenic |
ATTAAAGACCCAACCAAACC+GGG | 0.517060 | 3_3:+90716060 | None:intergenic |
ATGAGTCTCGGAGGAGATTG+AGG | 0.524502 | 3_3:-90716214 | None:intergenic |
CAGAAGACAAGAGATCCGTC+TGG | 0.525828 | 3_3:+90716275 | Msa0482990:CDS |
GTATGTTGCCCAAATTCCTC+AGG | 0.527688 | 3_3:+90716386 | Msa0482990:CDS |
ACTAAAGCCCAAGTTTAGAA+AGG | 0.532749 | 3_3:-90720951 | None:intergenic |
TGATAACATCTTTAGGGAGA+GGG | 0.534427 | 3_3:-90721038 | None:intergenic |
GCCAGCTCATTGGTGTAGAT+GGG | 0.545089 | 3_3:-90721310 | None:intergenic |
AATAACTTGAAGGAAATTGA+AGG | 0.546732 | 3_3:+90719658 | Msa0482990:CDS |
TTGATAACATCTTTAGGGAG+AGG | 0.551055 | 3_3:-90721039 | None:intergenic |
TGATACACTCGACCTTCTCA+AGG | 0.552104 | 3_3:+90716326 | Msa0482990:CDS |
GGCTTATCTTCTGTCCATTG+AGG | 0.552577 | 3_3:-90718304 | None:intergenic |
ATCTTGGACCTTGTAAGTAG+TGG | 0.552901 | 3_3:+90719619 | Msa0482990:CDS |
TGAGCCAACCATCGTTAGCT+GGG | 0.555529 | 3_3:+90720110 | Msa0482990:CDS |
GACTGCTGACGGAGCACTGG+AGG | 0.563946 | 3_3:+90718515 | Msa0482990:CDS |
CATACAAACTGATGCAGAGG+TGG | 0.567776 | 3_3:-90721125 | None:intergenic |
AGTCATATGTGTGCCCAAGA+AGG | 0.572168 | 3_3:+90720388 | Msa0482990:CDS |
AATGACAACACAATCTCCTC+CGG | 0.573673 | 3_3:+90716249 | Msa0482990:CDS |
AGCACTGGAGGCAGCTCCTG+CGG | 0.577767 | 3_3:+90718527 | Msa0482990:CDS |
ATTCATGTGATGCAGATTGG+AGG | 0.578035 | 3_3:+90720862 | Msa0482990:intron |
GCAACCCAGCTAACGATGGT+TGG | 0.580333 | 3_3:-90720114 | None:intergenic |
CGTCTGGGTTTACCCAGTAA+AGG | 0.581574 | 3_3:+90716291 | Msa0482990:CDS |
ACCCATCTACACCAATGAGC+TGG | 0.584141 | 3_3:+90721309 | Msa0482990:three_prime_UTR |
TGAAAATGTAAATTCACTAG+AGG | 0.584392 | 3_3:+90718267 | Msa0482990:CDS |
TTTCTGCAAGCGCGATGGAA+AGG | 0.585463 | 3_3:+90720343 | Msa0482990:CDS |
CTCTTGTCTTCTGCTGCCGG+AGG | 0.586047 | 3_3:-90716265 | None:intergenic |
TATACTCACTGAATTTGGCC+AGG | 0.586920 | 3_3:+90716595 | Msa0482990:CDS |
AAGATTAGAGGCACATCTGA+GGG | 0.596395 | 3_3:+90719932 | Msa0482990:CDS |
GTGATGCAGATTGGAGGCAG+CGG | 0.598542 | 3_3:+90720868 | Msa0482990:intron |
GTAATTTCAACTCACCGCAA+TGG | 0.599912 | 3_3:-90718139 | None:intergenic |
GTCTATACAGCAACTGAGAG+CGG | 0.600820 | 3_3:+90720421 | Msa0482990:CDS |
AAGAACTTGATGATGAGTCT+CGG | 0.602026 | 3_3:-90716226 | None:intergenic |
GATAACATCTTTAGGGAGAG+GGG | 0.611885 | 3_3:-90721037 | None:intergenic |
GCAAGCAGGAAATCATTGAT+CGG | 0.612487 | 3_3:+90719870 | Msa0482990:CDS |
AAAGATTAGAGGCACATCTG+AGG | 0.618033 | 3_3:+90719931 | Msa0482990:CDS |
GAAGACATACGACCTTTACT+GGG | 0.626259 | 3_3:-90716303 | None:intergenic |
AGAAGACAAGAGATCCGTCT+GGG | 0.626407 | 3_3:+90716276 | Msa0482990:CDS |
ACAATTGACAATCCTTGAGA+AGG | 0.631059 | 3_3:-90716338 | None:intergenic |
TGATTGTCGTTTATCCATTG+CGG | 0.633490 | 3_3:+90718125 | Msa0482990:CDS |
AGATAATGGTATTAAGCATG+TGG | 0.634797 | 3_3:+90718485 | Msa0482990:CDS |
CAACATACAAACTGATGCAG+AGG | 0.635116 | 3_3:-90721128 | None:intergenic |
GAGGCGTAGCAGCAATAGAG+AGG | 0.638994 | 3_3:-90716195 | None:intergenic |
CAGAAAACAGGACTTACTGT+GGG | 0.647329 | 3_3:-90720326 | None:intergenic |
CAGGTTGTAGCAAACATGAG+AGG | 0.648123 | 3_3:+90720055 | Msa0482990:intron |
AACTTGAAGGAAATTGAAGG+TGG | 0.649831 | 3_3:+90719661 | Msa0482990:CDS |
GCAGAAAACAGGACTTACTG+TGG | 0.653659 | 3_3:-90720327 | None:intergenic |
AATCCAGTTGCAACTCGCAG+AGG | 0.653851 | 3_3:-90718325 | None:intergenic |
AGTGTTCGATTGAGACACCC+CGG | 0.654360 | 3_3:-90716078 | None:intergenic |
CATGAGAGGAAGTAGTGCAG+AGG | 0.654817 | 3_3:+90720069 | Msa0482990:CDS |
ATACAAACTGATGCAGAGGT+GGG | 0.659693 | 3_3:-90721124 | None:intergenic |
AGGCACATCTGAGGGCTATG+GGG | 0.661787 | 3_3:+90719940 | Msa0482990:CDS |
AGATCTTATCGTTGTCCACG+AGG | 0.663229 | 3_3:+90718089 | Msa0482990:CDS |
ACCTGCAACCCAGCTAACGA+TGG | 0.667474 | 3_3:-90720118 | None:intergenic |
CACCGTACTCCAAAGCCTCG+TGG | 0.672065 | 3_3:-90718104 | None:intergenic |
CTTTACTGGGTAAACCCAGA+CGG | 0.678884 | 3_3:-90716290 | None:intergenic |
ATTTGGGCAACATACTGACG+TGG | 0.682664 | 3_3:-90716378 | None:intergenic |
AACTTGATGATGAGTCTCGG+AGG | 0.694599 | 3_3:-90716223 | None:intergenic |
TGATGGCGAAGCTAAGTCTG+TGG | 0.697484 | 3_3:-90716104 | None:intergenic |
CATTTGTTGCTCGATAACAG+AGG | 0.701698 | 3_3:+90721096 | Msa0482990:three_prime_UTR |
TTAAAGACCCAACCAAACCG+GGG | 0.720593 | 3_3:+90716061 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTATTATAATGAAGAGA+AGG | - | chr3_3:90716439-90716458 | None:intergenic | 15.0% |
!! | AAGATAACAAAGAAATTATT+TGG | - | chr3_3:90716622-90716641 | None:intergenic | 15.0% |
!!! | TTTTATATGTTTCAATGTAT+GGG | + | chr3_3:90716666-90716685 | Msa0482990:intron | 15.0% |
!! | AAAAAAGAATCACATTAATT+GGG | - | chr3_3:90716754-90716773 | None:intergenic | 15.0% |
!!! | ATAAATTCTAAGAAAATAGA+AGG | - | chr3_3:90716987-90717006 | None:intergenic | 15.0% |
!!! | TGTTTGAATTTTAAATTTAG+CGG | - | chr3_3:90717604-90717623 | None:intergenic | 15.0% |
!! | ATGTTAATTGTACTAAATAT+AGG | - | chr3_3:90717634-90717653 | None:intergenic | 15.0% |
!! | TTAAATCAAATGATAGTTAT+TGG | + | chr3_3:90718645-90718664 | Msa0482990:intron | 15.0% |
!! | TAAATCAAATGATAGTTATT+GGG | + | chr3_3:90718646-90718665 | Msa0482990:intron | 15.0% |
!! | ATATTATCTTCAAATTTCAT+AGG | + | chr3_3:90718809-90718828 | Msa0482990:intron | 15.0% |
!! | GATAAAAAATATTGAGAAAA+AGG | - | chr3_3:90719449-90719468 | None:intergenic | 15.0% |
!!! | AATTTTCTAACAATGTCTTT+GGG | - | chr3_3:90716536-90716555 | None:intergenic | 20.0% |
!! | ATTGTTAGAAAATTGTTATC+TGG | + | chr3_3:90716542-90716561 | Msa0482990:CDS | 20.0% |
!!! | AATTTCTTTGTTATCTTTTC+TGG | + | chr3_3:90716625-90716644 | Msa0482990:intron | 20.0% |
!!! | ATTTCTTTGTTATCTTTTCT+GGG | + | chr3_3:90716626-90716645 | Msa0482990:intron | 20.0% |
!!! | CTTTTATATGTTTCAATGTA+TGG | + | chr3_3:90716665-90716684 | Msa0482990:intron | 20.0% |
!! | GAAAAAAGAATCACATTAAT+TGG | - | chr3_3:90716755-90716774 | None:intergenic | 20.0% |
!!! | ATTAATGTGATTCTTTTTTC+TGG | + | chr3_3:90716755-90716774 | Msa0482990:intron | 20.0% |
!! | AATTCCAAAACCAAAATTTA+TGG | - | chr3_3:90717180-90717199 | None:intergenic | 20.0% |
!!! | AATCGTTTTCTATAGAAAAA+AGG | + | chr3_3:90717470-90717489 | Msa0482990:intron | 20.0% |
!!! | GTTTGAATTTTAAATTTAGC+GGG | - | chr3_3:90717603-90717622 | None:intergenic | 20.0% |
!!! | GATAAAAATATTGATTCTCA+TGG | - | chr3_3:90718038-90718057 | None:intergenic | 20.0% |
!! | TATAACAATTATCCTTTATC+AGG | + | chr3_3:90718059-90718078 | Msa0482990:intron | 20.0% |
!! | ATAACAATTATCCTTTATCA+GGG | + | chr3_3:90718060-90718079 | Msa0482990:intron | 20.0% |
!!! | TTTTCAAATATTCCATATTG+CGG | - | chr3_3:90718253-90718272 | None:intergenic | 20.0% |
!! | CCATTATCTTTCATAAATTT+AGG | - | chr3_3:90718474-90718493 | None:intergenic | 20.0% |
!! | CCTAAATTTATGAAAGATAA+TGG | + | chr3_3:90718471-90718490 | Msa0482990:CDS | 20.0% |
!! | ATAGCTTAATACACTAATAA+TGG | + | chr3_3:90718721-90718740 | Msa0482990:intron | 20.0% |
!! | AGTCAAGAATTATAAATTGT+AGG | + | chr3_3:90718921-90718940 | Msa0482990:intron | 20.0% |
!! | TGAAAGATATAATAAGCTTT+AGG | + | chr3_3:90718980-90718999 | Msa0482990:intron | 20.0% |
!! | CCAGAAATTTATAATTAGAT+CGG | - | chr3_3:90719137-90719156 | None:intergenic | 20.0% |
!!! | TTTTGCATATCATATTCATA+TGG | + | chr3_3:90720682-90720701 | Msa0482990:intron | 20.0% |
!! | TGTAAAAAAAACTCCATAAA+TGG | - | chr3_3:90720989-90721008 | None:intergenic | 20.0% |
!! | AATTGAAGAAAAGAAACTAT+AGG | - | chr3_3:90721170-90721189 | None:intergenic | 20.0% |
! | TTAATTAACCTGAGGAATTT+GGG | - | chr3_3:90716397-90716416 | None:intergenic | 25.0% |
! | ATTAATTAACCTGAGGAATT+TGG | - | chr3_3:90716398-90716417 | None:intergenic | 25.0% |
! | GTAAGTAATTAATTAACCTG+AGG | - | chr3_3:90716405-90716424 | None:intergenic | 25.0% |
!! | CAATTTTCTAACAATGTCTT+TGG | - | chr3_3:90716537-90716556 | None:intergenic | 25.0% |
! | GCAAATGATACAAAATTACT+AGG | + | chr3_3:90716801-90716820 | Msa0482990:intron | 25.0% |
! | TGATACAAAATTACTAGGAA+AGG | + | chr3_3:90716806-90716825 | Msa0482990:intron | 25.0% |
! | GATACAAAATTACTAGGAAA+GGG | + | chr3_3:90716807-90716826 | Msa0482990:intron | 25.0% |
! | AAATTCTTTCAAATTTCGGA+GGG | - | chr3_3:90717208-90717227 | None:intergenic | 25.0% |
! | CCACAAATTCTTTCAAATTT+CGG | - | chr3_3:90717212-90717231 | None:intergenic | 25.0% |
! | CACAAAACAATGAAATTGAT+AGG | - | chr3_3:90718192-90718211 | None:intergenic | 25.0% |
! | TGAAAATGTAAATTCACTAG+AGG | + | chr3_3:90718267-90718286 | Msa0482990:CDS | 25.0% |
! | TAAATGTGAATCACATACAT+AGG | - | chr3_3:90718353-90718372 | None:intergenic | 25.0% |
!!! | ATGTTTTGAAGTTTTATCTG+TGG | + | chr3_3:90718377-90718396 | Msa0482990:intron | 25.0% |
!! | TTTAGAATCTGAAAACATAC+AGG | - | chr3_3:90718586-90718605 | None:intergenic | 25.0% |
! | AAATGATAGTTATTGGGATT+TGG | + | chr3_3:90718652-90718671 | Msa0482990:intron | 25.0% |
!!! | CATGGTTATCTTTGATTTTT+GGG | - | chr3_3:90718765-90718784 | None:intergenic | 25.0% |
!! | TCAAATCTATATTTTCTCAC+CGG | + | chr3_3:90719016-90719035 | Msa0482990:intron | 25.0% |
! | AGCATTGTTTGAGTAAATTA+AGG | + | chr3_3:90719091-90719110 | Msa0482990:intron | 25.0% |
! | CCGATCTAATTATAAATTTC+TGG | + | chr3_3:90719134-90719153 | Msa0482990:intron | 25.0% |
! | GAAATATCTTATATGGAAAG+AGG | - | chr3_3:90719418-90719437 | None:intergenic | 25.0% |
! | AAACAGGGAAATATCTTATA+TGG | - | chr3_3:90719425-90719444 | None:intergenic | 25.0% |
! | TATTGAGAAAAAGGTAAACA+GGG | - | chr3_3:90719440-90719459 | None:intergenic | 25.0% |
! | ATATTGAGAAAAAGGTAAAC+AGG | - | chr3_3:90719441-90719460 | None:intergenic | 25.0% |
!! | TTGTCTTTTCTCTATTTAGA+TGG | + | chr3_3:90719582-90719601 | Msa0482990:intron | 25.0% |
!! | TGTCTTTTCTCTATTTAGAT+GGG | + | chr3_3:90719583-90719602 | Msa0482990:intron | 25.0% |
! | GTTGAAAGAAAATAACTTGA+AGG | + | chr3_3:90719648-90719667 | Msa0482990:CDS | 25.0% |
! | AATAACTTGAAGGAAATTGA+AGG | + | chr3_3:90719658-90719677 | Msa0482990:CDS | 25.0% |
!!! | TGATCTGCTGTTTTTTTAAA+AGG | + | chr3_3:90719739-90719758 | Msa0482990:intron | 25.0% |
!! | CCATTTTCTAATGTTAAATC+CGG | + | chr3_3:90720032-90720051 | Msa0482990:intron | 25.0% |
! | TAGGAAAAAGAAATTAGACA+CGG | + | chr3_3:90720528-90720547 | Msa0482990:intron | 25.0% |
! | TATGATATGCAAAAATTGAG+AGG | - | chr3_3:90720676-90720695 | None:intergenic | 25.0% |
!!! | ATTCTCATACCTATTTCTTT+TGG | + | chr3_3:90720835-90720854 | Msa0482990:intron | 25.0% |
!!! | GGAGTTTTTTTTACAGTATA+TGG | + | chr3_3:90720994-90721013 | Msa0482990:intron | 25.0% |
! | TCTCTTGATTCTAGATAATT+TGG | + | chr3_3:90721195-90721214 | Msa0482990:three_prime_UTR | 25.0% |
! | CTCTTGATTCTAGATAATTT+GGG | + | chr3_3:90721196-90721215 | Msa0482990:three_prime_UTR | 25.0% |
!! | TTTAACTTCAACAATTGTTG+TGG | + | chr3_3:90721234-90721253 | Msa0482990:three_prime_UTR | 25.0% |
! | TTAACTTCAACAATTGTTGT+GGG | + | chr3_3:90721235-90721254 | Msa0482990:three_prime_UTR | 25.0% |
! | ATCAAACTTCATTTGAAAGA+TGG | - | chr3_3:90721335-90721354 | None:intergenic | 25.0% |
AATAGAGAGGTAAACGAATT+TGG | - | chr3_3:90716185-90716204 | None:intergenic | 30.0% | |
ACAAAGAAATTATTTGGACC+TGG | - | chr3_3:90716616-90716635 | None:intergenic | 30.0% | |
! | ATGTTTCAATGTATGGGTTA+AGG | + | chr3_3:90716672-90716691 | Msa0482990:intron | 30.0% |
! | TGTTTCAATGTATGGGTTAA+GGG | + | chr3_3:90716673-90716692 | Msa0482990:intron | 30.0% |
AGAATCACATTAATTGGGAA+CGG | - | chr3_3:90716749-90716768 | None:intergenic | 30.0% | |
TGCTTCTCTGAATAAATTGA+AGG | - | chr3_3:90716886-90716905 | None:intergenic | 30.0% | |
!! | GAAATGAAGCTATTTCTACT+AGG | - | chr3_3:90717016-90717035 | None:intergenic | 30.0% |
! | TTTTACCTGTGGTTAAATTG+GGG | - | chr3_3:90717039-90717058 | None:intergenic | 30.0% |
! | CTTTTACCTGTGGTTAAATT+GGG | - | chr3_3:90717040-90717059 | None:intergenic | 30.0% |
!!! | TAAAAGCCCTGCATTTTTTT+GGG | + | chr3_3:90717054-90717073 | Msa0482990:intron | 30.0% |
AACATTCCCAAAAAAATGCA+GGG | - | chr3_3:90717063-90717082 | None:intergenic | 30.0% | |
AAACATTCCCAAAAAAATGC+AGG | - | chr3_3:90717064-90717083 | None:intergenic | 30.0% | |
!! | TATATGTGACTTGTTACTGA+TGG | + | chr3_3:90717120-90717139 | Msa0482990:intron | 30.0% |
! | CAACTAGAGTCCATAAATTT+TGG | + | chr3_3:90717167-90717186 | Msa0482990:intron | 30.0% |
!!! | GAGTCCATAAATTTTGGTTT+TGG | + | chr3_3:90717173-90717192 | Msa0482990:intron | 30.0% |
AATTCTTTCAAATTTCGGAG+GGG | - | chr3_3:90717207-90717226 | None:intergenic | 30.0% | |
CAAATTCTTTCAAATTTCGG+AGG | - | chr3_3:90717209-90717228 | None:intergenic | 30.0% | |
CCGAAATTTGAAAGAATTTG+TGG | + | chr3_3:90717209-90717228 | Msa0482990:intron | 30.0% | |
TCAGATATTTGGTATTTGCA+GGG | - | chr3_3:90717293-90717312 | None:intergenic | 30.0% | |
TTCAGATATTTGGTATTTGC+AGG | - | chr3_3:90717294-90717313 | None:intergenic | 30.0% | |
AGAATAAACCACCTTGAAAT+TGG | + | chr3_3:90717342-90717361 | Msa0482990:intron | 30.0% | |
GAATAAACCACCTTGAAATT+GGG | + | chr3_3:90717343-90717362 | Msa0482990:intron | 30.0% | |
AAAAAAGGAATAGCATATCC+CGG | + | chr3_3:90717485-90717504 | Msa0482990:intron | 30.0% | |
!!! | TGCAGTTAGTTTTATTCCTT+AGG | - | chr3_3:90717518-90717537 | None:intergenic | 30.0% |
AAGTTGGCATAATGGTTAAT+AGG | - | chr3_3:90717555-90717574 | None:intergenic | 30.0% | |
!! | TTCTTTGAAACATCTATCTC+TGG | + | chr3_3:90717809-90717828 | Msa0482990:intron | 30.0% |
! | AGATAATGGTATTAAGCATG+TGG | + | chr3_3:90718485-90718504 | Msa0482990:CDS | 30.0% |
!! | GCATGGTTATCTTTGATTTT+TGG | - | chr3_3:90718766-90718785 | None:intergenic | 30.0% |
CAAACAATGCTACTAAAATC+AGG | - | chr3_3:90719082-90719101 | None:intergenic | 30.0% | |
!!! | CTCTTTTTTTCTGGTTTATG+TGG | + | chr3_3:90719221-90719240 | Msa0482990:intron | 30.0% |
!!! | TTTTTTTCTGGTTTATGTGG+AGG | + | chr3_3:90719224-90719243 | Msa0482990:intron | 30.0% |
!!! | TTTTTTCTGGTTTATGTGGA+GGG | + | chr3_3:90719225-90719244 | Msa0482990:intron | 30.0% |
! | GTCTTTTCTCTATTTAGATG+GGG | + | chr3_3:90719584-90719603 | Msa0482990:intron | 30.0% |
! | CTGATAATTGAACACTTTTC+AGG | + | chr3_3:90719836-90719855 | Msa0482990:intron | 30.0% |
ACAAAGAGAAAGGAAAAAAC+TGG | - | chr3_3:90720011-90720030 | None:intergenic | 30.0% | |
AGAAAATGGAACAAAGAGAA+AGG | - | chr3_3:90720021-90720040 | None:intergenic | 30.0% | |
CCGGATTTAACATTAGAAAA+TGG | - | chr3_3:90720035-90720054 | None:intergenic | 30.0% | |
TTTCTATAAGCATGTGAAGA+TGG | + | chr3_3:90720483-90720502 | Msa0482990:intron | 30.0% | |
AGGAAAAAGAAATTAGACAC+GGG | + | chr3_3:90720529-90720548 | Msa0482990:intron | 30.0% | |
AAATCAAGAATCCATACAAC+TGG | - | chr3_3:90720582-90720601 | None:intergenic | 30.0% | |
CAAGCATGACTATAAGTTAT+TGG | + | chr3_3:90720647-90720666 | Msa0482990:intron | 30.0% | |
TGAATGTAGCCAAAAGAAAT+AGG | - | chr3_3:90720847-90720866 | None:intergenic | 30.0% | |
TCGTCAAAAATATAGGTCAA+GGG | - | chr3_3:90720907-90720926 | None:intergenic | 30.0% | |
AGTTTCCTCGTCAAAAATAT+AGG | - | chr3_3:90720914-90720933 | None:intergenic | 30.0% | |
TCATACATGTGTTCCATTTA+TGG | + | chr3_3:90720973-90720992 | Msa0482990:three_prime_UTR | 30.0% | |
! | CTGCATTGATAACATCTTTA+GGG | - | chr3_3:90721047-90721066 | None:intergenic | 30.0% |
! | TCTGCATTGATAACATCTTT+AGG | - | chr3_3:90721048-90721067 | None:intergenic | 30.0% |
! | ATTCTAGATAATTTGGGATG+CGG | + | chr3_3:90721202-90721221 | Msa0482990:three_prime_UTR | 30.0% |
!! | AAGAACTTGATGATGAGTCT+CGG | - | chr3_3:90716229-90716248 | None:intergenic | 35.0% |
ACAATTGACAATCCTTGAGA+AGG | - | chr3_3:90716341-90716360 | None:intergenic | 35.0% | |
TACACTGCAGATTTCAAACT+TGG | + | chr3_3:90716493-90716512 | Msa0482990:intron | 35.0% | |
AGATTTCAAACTTGGAAGTC+TGG | + | chr3_3:90716501-90716520 | Msa0482990:intron | 35.0% | |
TAACAATGTCTTTGGGTCTT+TGG | - | chr3_3:90716529-90716548 | None:intergenic | 35.0% | |
TTATCTGGAGATCTTGATCT+TGG | + | chr3_3:90716557-90716576 | Msa0482990:CDS | 35.0% | |
GATCTTGATCTTGGTATTGT+CGG | + | chr3_3:90716566-90716585 | Msa0482990:CDS | 35.0% | |
CTCGATATACTCACTGAATT+TGG | + | chr3_3:90716590-90716609 | Msa0482990:CDS | 35.0% | |
! | GTTTCAATGTATGGGTTAAG+GGG | + | chr3_3:90716674-90716693 | Msa0482990:intron | 35.0% |
CAAAGAAGACTGTGAAGAAA+CGG | - | chr3_3:90716928-90716947 | None:intergenic | 35.0% | |
ATATGATACTGCTGCTAATG+CGG | - | chr3_3:90716954-90716973 | None:intergenic | 35.0% | |
TTTACCTGTGGTTAAATTGG+GGG | - | chr3_3:90717038-90717057 | None:intergenic | 35.0% | |
! | GCTTTTACCTGTGGTTAAAT+TGG | - | chr3_3:90717041-90717060 | None:intergenic | 35.0% |
!!! | GTAAAAGCCCTGCATTTTTT+TGG | + | chr3_3:90717053-90717072 | Msa0482990:intron | 35.0% |
CAGTAACAAGTCACATATAG+AGG | - | chr3_3:90717119-90717138 | None:intergenic | 35.0% | |
ATTCTTTCAAATTTCGGAGG+GGG | - | chr3_3:90717206-90717225 | None:intergenic | 35.0% | |
GTGAGGCAAATTCAGATATT+TGG | - | chr3_3:90717304-90717323 | None:intergenic | 35.0% | |
TGTGAATAGTCACTACTTAC+TGG | - | chr3_3:90717689-90717708 | None:intergenic | 35.0% | |
AGGGCATACAAAAAAGATTG+TGG | - | chr3_3:90717953-90717972 | None:intergenic | 35.0% | |
AAAGCAAAGTTGCATGATCA+GGG | - | chr3_3:90717972-90717991 | None:intergenic | 35.0% | |
AAAAGCAAAGTTGCATGATC+AGG | - | chr3_3:90717973-90717992 | None:intergenic | 35.0% | |
CAATTGCAGAACAATGTTCT+GGG | + | chr3_3:90718008-90718027 | Msa0482990:intron | 35.0% | |
! | TGATTGTCGTTTATCCATTG+CGG | + | chr3_3:90718125-90718144 | Msa0482990:CDS | 35.0% |
TTGTTTCAGATTCCGCAATA+TGG | + | chr3_3:90718238-90718257 | Msa0482990:intron | 35.0% | |
GATAGTTATTGGGATTTGGA+AGG | + | chr3_3:90718656-90718675 | Msa0482990:intron | 35.0% | |
ACCATGCTGTTAATGTCTAA+CGG | + | chr3_3:90718779-90718798 | Msa0482990:intron | 35.0% | |
GAAGATACATTCTACCTTGT+TGG | + | chr3_3:90718842-90718861 | Msa0482990:intron | 35.0% | |
! | CTACCTTGTTGGTTAATTTG+TGG | + | chr3_3:90718853-90718872 | Msa0482990:intron | 35.0% |
TAGCCACAAATTAACCAACA+AGG | - | chr3_3:90718859-90718878 | None:intergenic | 35.0% | |
ATCGGACTTCTCAATTCAAT+GGG | - | chr3_3:90719119-90719138 | None:intergenic | 35.0% | |
! | TTTTGTGTGTGAAGAAGTTC+TGG | + | chr3_3:90719183-90719202 | Msa0482990:intron | 35.0% |
!!! | TTTTTCTGGTTTATGTGGAG+GGG | + | chr3_3:90719226-90719245 | Msa0482990:intron | 35.0% |
! | TTGAGTCTGTGTTTTACGAT+TGG | + | chr3_3:90719263-90719282 | Msa0482990:intron | 35.0% |
! | TGAGTCTGTGTTTTACGATT+GGG | + | chr3_3:90719264-90719283 | Msa0482990:intron | 35.0% |
AAAAGGTCAACTCCAACATA+TGG | - | chr3_3:90719542-90719561 | None:intergenic | 35.0% | |
AACTTGAAGGAAATTGAAGG+TGG | + | chr3_3:90719661-90719680 | Msa0482990:CDS | 35.0% | |
! | AATTGAAGGTGGAACTGTTT+TGG | + | chr3_3:90719672-90719691 | Msa0482990:CDS | 35.0% |
!!! | TAAGCATACCTTGTCGTTTT+TGG | + | chr3_3:90719806-90719825 | Msa0482990:intron | 35.0% |
AAATCATTGATCGGACGAAA+AGG | + | chr3_3:90719879-90719898 | Msa0482990:CDS | 35.0% | |
TGAGATGCTTGAAAGATTAG+AGG | + | chr3_3:90719920-90719939 | Msa0482990:CDS | 35.0% | |
TTTCTAATGTTAAATCCGGC+AGG | + | chr3_3:90720036-90720055 | Msa0482990:intron | 35.0% | |
CCTAAAATGAATTAGGGTTG+GGG | - | chr3_3:90720166-90720185 | None:intergenic | 35.0% | |
CCCTAAAATGAATTAGGGTT+GGG | - | chr3_3:90720167-90720186 | None:intergenic | 35.0% | |
! | CCCAACCCTAATTCATTTTA+GGG | + | chr3_3:90720164-90720183 | Msa0482990:intron | 35.0% |
! | CCAACCCTAATTCATTTTAG+GGG | + | chr3_3:90720165-90720184 | Msa0482990:intron | 35.0% |
TCCTCCCCTAAAATGAATTA+GGG | - | chr3_3:90720172-90720191 | None:intergenic | 35.0% | |
ATCCTCCCCTAAAATGAATT+AGG | - | chr3_3:90720173-90720192 | None:intergenic | 35.0% | |
GCAGAAAGCAAATACAGAAA+GGG | - | chr3_3:90720201-90720220 | None:intergenic | 35.0% | |
TGCAGAAAGCAAATACAGAA+AGG | - | chr3_3:90720202-90720221 | None:intergenic | 35.0% | |
GAGACTCTTAAAATTAGGAG+TGG | - | chr3_3:90720283-90720302 | None:intergenic | 35.0% | |
CAAGGGAGACTCTTAAAATT+AGG | - | chr3_3:90720288-90720307 | None:intergenic | 35.0% | |
ATGCAAAGAAACCAGTTGTA+TGG | + | chr3_3:90720568-90720587 | Msa0482990:intron | 35.0% | |
AACAACAACAACAACAACCA+AGG | + | chr3_3:90720711-90720730 | Msa0482990:intron | 35.0% | |
TACATTCATGTGATGCAGAT+TGG | + | chr3_3:90720859-90720878 | Msa0482990:intron | 35.0% | |
CTCGTCAAAAATATAGGTCA+AGG | - | chr3_3:90720908-90720927 | None:intergenic | 35.0% | |
!! | CTTGACCTATATTTTTGACG+AGG | + | chr3_3:90720906-90720925 | Msa0482990:CDS | 35.0% |
ACTAAAGCCCAAGTTTAGAA+AGG | - | chr3_3:90720954-90720973 | None:intergenic | 35.0% | |
! | TGATAACATCTTTAGGGAGA+GGG | - | chr3_3:90721041-90721060 | None:intergenic | 35.0% |
! | TTGATAACATCTTTAGGGAG+AGG | - | chr3_3:90721042-90721061 | None:intergenic | 35.0% |
TTGTTGTGGGAGTTAAAGTA+TGG | + | chr3_3:90721248-90721267 | Msa0482990:three_prime_UTR | 35.0% | |
AATGACAACACAATCTCCTC+CGG | + | chr3_3:90716249-90716268 | Msa0482990:CDS | 40.0% | |
GAAGACATACGACCTTTACT+GGG | - | chr3_3:90716306-90716325 | None:intergenic | 40.0% | |
AGAAGACATACGACCTTTAC+TGG | - | chr3_3:90716307-90716326 | None:intergenic | 40.0% | |
TTGTCAATTGTCAGTCAAGC+AGG | + | chr3_3:90716350-90716369 | Msa0482990:CDS | 40.0% | |
TATACTCACTGAATTTGGCC+AGG | + | chr3_3:90716595-90716614 | Msa0482990:CDS | 40.0% | |
ATTTCCCCCAATTTAACCAC+AGG | + | chr3_3:90717031-90717050 | Msa0482990:intron | 40.0% | |
AAGGTGGTTTATTCTTCGTG+TGG | - | chr3_3:90717337-90717356 | None:intergenic | 40.0% | |
GAAGATTCATGTTTGCGGTT+GGG | - | chr3_3:90717380-90717399 | None:intergenic | 40.0% | |
CATCGGAAGATTCATGTTTG+CGG | - | chr3_3:90717385-90717404 | None:intergenic | 40.0% | |
AATCTTCCGATGCTTTGACA+AGG | + | chr3_3:90717393-90717412 | Msa0482990:intron | 40.0% | |
AAACCATGATGAGCTTCAAG+TGG | - | chr3_3:90717427-90717446 | None:intergenic | 40.0% | |
TTATTCCTTAGGTGCAGAAC+CGG | - | chr3_3:90717507-90717526 | None:intergenic | 40.0% | |
! | ATGTTTGATGTCGCTTCACT+GGG | - | chr3_3:90717579-90717598 | None:intergenic | 40.0% |
! | AATGTTTGATGTCGCTTCAC+TGG | - | chr3_3:90717580-90717599 | None:intergenic | 40.0% |
ACGACTAGCATCCTCAATTT+CGG | - | chr3_3:90717751-90717770 | None:intergenic | 40.0% | |
ACATCTATCTCTGGTCATCA+TGG | + | chr3_3:90717818-90717837 | Msa0482990:intron | 40.0% | |
!! | ATGCAACTTTGCTTTTCCCT+CGG | + | chr3_3:90717977-90717996 | Msa0482990:intron | 40.0% |
TGCAATTGCATTTAAGCCGA+GGG | - | chr3_3:90717996-90718015 | None:intergenic | 40.0% | |
GCAATTGCAGAACAATGTTC+TGG | + | chr3_3:90718007-90718026 | Msa0482990:intron | 40.0% | |
GATCTTCATTGCCCTGATAA+AGG | - | chr3_3:90718074-90718093 | None:intergenic | 40.0% | |
GTAATTTCAACTCACCGCAA+TGG | - | chr3_3:90718142-90718161 | None:intergenic | 40.0% | |
! | ATTGCGGAATCTGAAACAAC+AGG | - | chr3_3:90718237-90718256 | None:intergenic | 40.0% |
AGCTAGCAAAAATGCCTCAA+TGG | + | chr3_3:90718290-90718309 | Msa0482990:CDS | 40.0% | |
TTTCCTTCTTACTCTTCAGC+TGG | + | chr3_3:90718446-90718465 | Msa0482990:intron | 40.0% | |
TTCCTTCTTACTCTTCAGCT+GGG | + | chr3_3:90718447-90718466 | Msa0482990:intron | 40.0% | |
ACATGGCACATAAAGCTTTC+CGG | - | chr3_3:90719038-90719057 | None:intergenic | 40.0% | |
TCGGACTTCTCAATTCAATG+GGG | - | chr3_3:90719118-90719137 | None:intergenic | 40.0% | |
GATCGGACTTCTCAATTCAA+TGG | - | chr3_3:90719120-90719139 | None:intergenic | 40.0% | |
!! | GTGAAGAAGTTCTGGTTTCT+TGG | + | chr3_3:90719191-90719210 | Msa0482990:intron | 40.0% |
!!! | GGCATTGTGCTCTTTTTTTC+TGG | + | chr3_3:90719212-90719231 | Msa0482990:intron | 40.0% |
!!! | TTTTCTGGTTTATGTGGAGG+GGG | + | chr3_3:90719227-90719246 | Msa0482990:intron | 40.0% |
ACACTAAGAGCAGAGTTCAA+TGG | - | chr3_3:90719305-90719324 | None:intergenic | 40.0% | |
ATCTTGGACCTTGTAAGTAG+TGG | + | chr3_3:90719619-90719638 | Msa0482990:CDS | 40.0% | |
ACGTTGTTCCACTACTTACA+AGG | - | chr3_3:90719630-90719649 | None:intergenic | 40.0% | |
!!! | TGGAACTGTTTTGGAAAGTC+AGG | + | chr3_3:90719681-90719700 | Msa0482990:CDS | 40.0% |
ACAGCAGATCATGCTAGTTA+GGG | - | chr3_3:90719730-90719749 | None:intergenic | 40.0% | |
AACAGCAGATCATGCTAGTT+AGG | - | chr3_3:90719731-90719750 | None:intergenic | 40.0% | |
!!! | CTGTTTTTTTAAAAGGCGCC+TGG | + | chr3_3:90719746-90719765 | Msa0482990:intron | 40.0% |
GAGTGAAACCAAAAACGACA+AGG | - | chr3_3:90719817-90719836 | None:intergenic | 40.0% | |
GCAAGCAGGAAATCATTGAT+CGG | + | chr3_3:90719870-90719889 | Msa0482990:CDS | 40.0% | |
! | AAAGATTAGAGGCACATCTG+AGG | + | chr3_3:90719931-90719950 | Msa0482990:CDS | 40.0% |
! | AAGATTAGAGGCACATCTGA+GGG | + | chr3_3:90719932-90719951 | Msa0482990:CDS | 40.0% |
GAGAAAGGAAAAAACTGGTG+AGG | - | chr3_3:90720006-90720025 | None:intergenic | 40.0% | |
! | CCCCAACCCTAATTCATTTT+AGG | + | chr3_3:90720163-90720182 | Msa0482990:intron | 40.0% |
CCCCTAAAATGAATTAGGGT+TGG | - | chr3_3:90720168-90720187 | None:intergenic | 40.0% | |
!! | ACCCTAATTCATTTTAGGGG+AGG | + | chr3_3:90720168-90720187 | Msa0482990:intron | 40.0% |
CTACTCACTATCACAATGCA+TGG | - | chr3_3:90720244-90720263 | None:intergenic | 40.0% | |
TCCCTTGATTGTCTATCTAC+AGG | + | chr3_3:90720301-90720320 | Msa0482990:intron | 40.0% | |
CCCTGTAGATAGACAATCAA+GGG | - | chr3_3:90720305-90720324 | None:intergenic | 40.0% | |
CCCTTGATTGTCTATCTACA+GGG | + | chr3_3:90720302-90720321 | Msa0482990:intron | 40.0% | |
TCCCTGTAGATAGACAATCA+AGG | - | chr3_3:90720306-90720325 | None:intergenic | 40.0% | |
CAGAAAACAGGACTTACTGT+GGG | - | chr3_3:90720329-90720348 | None:intergenic | 40.0% | |
TGAAGATGGTTGTGAGCTAA+TGG | + | chr3_3:90720497-90720516 | Msa0482990:intron | 40.0% | |
GAAGATGGTTGTGAGCTAAT+GGG | + | chr3_3:90720498-90720517 | Msa0482990:intron | 40.0% | |
AAGATGGTTGTGAGCTAATG+GGG | + | chr3_3:90720499-90720518 | Msa0482990:intron | 40.0% | |
ATTAGACACGGGTGTTTGAA+TGG | + | chr3_3:90720540-90720559 | Msa0482990:intron | 40.0% | |
TTAGACACGGGTGTTTGAAT+GGG | + | chr3_3:90720541-90720560 | Msa0482990:intron | 40.0% | |
ATTCATGTGATGCAGATTGG+AGG | + | chr3_3:90720862-90720881 | Msa0482990:intron | 40.0% | |
GTCAGCTCCTTTCTAAACTT+GGG | + | chr3_3:90720944-90720963 | Msa0482990:CDS | 40.0% | |
! | GATAACATCTTTAGGGAGAG+GGG | - | chr3_3:90721040-90721059 | None:intergenic | 40.0% |
! | CATTTGTTGCTCGATAACAG+AGG | + | chr3_3:90721096-90721115 | Msa0482990:three_prime_UTR | 40.0% |
ATACAAACTGATGCAGAGGT+GGG | - | chr3_3:90721127-90721146 | None:intergenic | 40.0% | |
CAACATACAAACTGATGCAG+AGG | - | chr3_3:90721131-90721150 | None:intergenic | 40.0% | |
!! | AACTTGATGATGAGTCTCGG+AGG | - | chr3_3:90716226-90716245 | None:intergenic | 45.0% |
AGAAGACAAGAGATCCGTCT+GGG | + | chr3_3:90716276-90716295 | Msa0482990:CDS | 45.0% | |
CTTTACTGGGTAAACCCAGA+CGG | - | chr3_3:90716293-90716312 | None:intergenic | 45.0% | |
TGATACACTCGACCTTCTCA+AGG | + | chr3_3:90716326-90716345 | Msa0482990:CDS | 45.0% | |
ATTTGGGCAACATACTGACG+TGG | - | chr3_3:90716381-90716400 | None:intergenic | 45.0% | |
GTATGTTGCCCAAATTCCTC+AGG | + | chr3_3:90716386-90716405 | Msa0482990:CDS | 45.0% | |
! | CAATGTATGGGTTAAGGGGA+AGG | + | chr3_3:90716678-90716697 | Msa0482990:intron | 45.0% |
GAAGGAGGAGATTCATAGCA+GGG | + | chr3_3:90716696-90716715 | Msa0482990:intron | 45.0% | |
TACATAGCCTACGCTACATG+TGG | + | chr3_3:90716779-90716798 | Msa0482990:intron | 45.0% | |
TCATTTGCCACATGTAGCGT+AGG | - | chr3_3:90716789-90716808 | None:intergenic | 45.0% | |
GTGAAGAAACGGAAACGAGA+AGG | - | chr3_3:90716917-90716936 | None:intergenic | 45.0% | |
! | AAATGCAGGGCTTTTACCTG+TGG | - | chr3_3:90717050-90717069 | None:intergenic | 45.0% |
!! | CGTGTGGTTCTAAGATAGTG+AGG | - | chr3_3:90717321-90717340 | None:intergenic | 45.0% |
CTAGAGGACTCCCAATTTCA+AGG | - | chr3_3:90717356-90717375 | None:intergenic | 45.0% | |
GGAAGATTCATGTTTGCGGT+TGG | - | chr3_3:90717381-90717400 | None:intergenic | 45.0% | |
TTACCGCCTTGTCAAAGCAT+CGG | - | chr3_3:90717402-90717421 | None:intergenic | 45.0% | |
ACTCCACTTGAAGCTCATCA+TGG | + | chr3_3:90717421-90717440 | Msa0482990:intron | 45.0% | |
TATTCCTTAGGTGCAGAACC+GGG | - | chr3_3:90717506-90717525 | None:intergenic | 45.0% | |
CACTGGGAAAGTTGGCATAA+TGG | - | chr3_3:90717563-90717582 | None:intergenic | 45.0% | |
! | CACTACTTACTGGTCTCAGT+AGG | - | chr3_3:90717679-90717698 | None:intergenic | 45.0% |
CTCTGATGAGTCCGAAATTG+AGG | + | chr3_3:90717737-90717756 | Msa0482990:intron | 45.0% | |
TTGTGTGCTTTAGCCCTGAT+CGG | + | chr3_3:90717877-90717896 | Msa0482990:intron | 45.0% | |
CTGCAATTGCATTTAAGCCG+AGG | - | chr3_3:90717997-90718016 | None:intergenic | 45.0% | |
AGATCTTATCGTTGTCCACG+AGG | + | chr3_3:90718089-90718108 | Msa0482990:CDS | 45.0% | |
GGCTTATCTTCTGTCCATTG+AGG | - | chr3_3:90718307-90718326 | None:intergenic | 45.0% | |
CAAACACTATCTCTTACCGC+AGG | - | chr3_3:90718546-90718565 | None:intergenic | 45.0% | |
GCCGTTAGACATTAACAGCA+TGG | - | chr3_3:90718783-90718802 | None:intergenic | 45.0% | |
GCTTTATGTGCCATGTTGAC+CGG | + | chr3_3:90719042-90719061 | Msa0482990:intron | 45.0% | |
TTCACAAATGCCGGTCAACA+TGG | - | chr3_3:90719055-90719074 | None:intergenic | 45.0% | |
TCAGGAACGTTCACAAATGC+CGG | - | chr3_3:90719064-90719083 | None:intergenic | 45.0% | |
!! | TTTCTGGTTTATGTGGAGGG+GGG | + | chr3_3:90719228-90719247 | Msa0482990:intron | 45.0% |
! | TGTTTTACGATTGGGTCCCA+AGG | + | chr3_3:90719272-90719291 | Msa0482990:intron | 45.0% |
CAGCATCAATGAGATGGTGA+CGG | - | chr3_3:90719516-90719535 | None:intergenic | 45.0% | |
TTGATGCTGCTGCCATATGT+TGG | + | chr3_3:90719527-90719546 | Msa0482990:intron | 45.0% | |
! | CATGAGAAGCAGCATTTTCC+AGG | - | chr3_3:90719767-90719786 | None:intergenic | 45.0% |
! | TGCTGCTTCTCATGTCTTGT+TGG | + | chr3_3:90719773-90719792 | Msa0482990:intron | 45.0% |
AAAAAACTGGTGAGGAGACG+AGG | - | chr3_3:90719998-90720017 | None:intergenic | 45.0% | |
! | TCATGTTTGCTACAACCTGC+CGG | - | chr3_3:90720054-90720073 | None:intergenic | 45.0% |
CAGGTTGTAGCAAACATGAG+AGG | + | chr3_3:90720055-90720074 | Msa0482990:intron | 45.0% | |
GCAGAAAACAGGACTTACTG+TGG | - | chr3_3:90720330-90720349 | None:intergenic | 45.0% | |
CTTGGGCACACATATGACTA+TGG | - | chr3_3:90720387-90720406 | None:intergenic | 45.0% | |
AGTCATATGTGTGCCCAAGA+AGG | + | chr3_3:90720388-90720407 | Msa0482990:CDS | 45.0% | |
GACTTGTACAGTGCCTTCTT+GGG | - | chr3_3:90720404-90720423 | None:intergenic | 45.0% | |
AGACTTGTACAGTGCCTTCT+TGG | - | chr3_3:90720405-90720424 | None:intergenic | 45.0% | |
GTCTATACAGCAACTGAGAG+CGG | + | chr3_3:90720421-90720440 | Msa0482990:CDS | 45.0% | |
TGAGCTAATGGGGCTAACTT+AGG | + | chr3_3:90720509-90720528 | Msa0482990:intron | 45.0% | |
CAAGGCTTATCCCACTAAGT+GGG | + | chr3_3:90720729-90720748 | Msa0482990:intron | 45.0% | |
AAGGCTTATCCCACTAAGTG+GGG | + | chr3_3:90720730-90720749 | Msa0482990:intron | 45.0% | |
TTGACGAGGAAACTCCTAGA+TGG | + | chr3_3:90720920-90720939 | Msa0482990:CDS | 45.0% | |
CGTCAGCTCCTTTCTAAACT+TGG | + | chr3_3:90720943-90720962 | Msa0482990:CDS | 45.0% | |
CATACAAACTGATGCAGAGG+TGG | - | chr3_3:90721128-90721147 | None:intergenic | 45.0% | |
TTGAAAGATGGCCAGCTCAT+TGG | - | chr3_3:90721323-90721342 | None:intergenic | 45.0% | |
AGTGTTCGATTGAGACACCC+CGG | - | chr3_3:90716081-90716100 | None:intergenic | 50.0% | |
! | TGATGGCGAAGCTAAGTCTG+TGG | - | chr3_3:90716107-90716126 | None:intergenic | 50.0% |
ATGAGTCTCGGAGGAGATTG+AGG | - | chr3_3:90716217-90716236 | None:intergenic | 50.0% | |
GATCTCTTGTCTTCTGCTGC+CGG | - | chr3_3:90716271-90716290 | None:intergenic | 50.0% | |
CAGAAGACAAGAGATCCGTC+TGG | + | chr3_3:90716275-90716294 | Msa0482990:CDS | 50.0% | |
CGTCTGGGTTTACCCAGTAA+AGG | + | chr3_3:90716291-90716310 | Msa0482990:CDS | 50.0% | |
! | TGTATGGGTTAAGGGGAAGG+AGG | + | chr3_3:90716681-90716700 | Msa0482990:intron | 50.0% |
GGAAGGAGGAGATTCATAGC+AGG | + | chr3_3:90716695-90716714 | Msa0482990:intron | 50.0% | |
! | GGCTATAGCATCTGAGACGT+CGG | - | chr3_3:90717098-90717117 | None:intergenic | 50.0% |
GAGGACTCCCAATTTCAAGG+TGG | - | chr3_3:90717353-90717372 | None:intergenic | 50.0% | |
ATGTTTGCGGTTGGGTCTAG+AGG | - | chr3_3:90717372-90717391 | None:intergenic | 50.0% | |
CTTCCGATGCTTTGACAAGG+CGG | + | chr3_3:90717396-90717415 | Msa0482990:intron | 50.0% | |
ATATCCCGGTTCTGCACCTA+AGG | + | chr3_3:90717499-90717518 | Msa0482990:intron | 50.0% | |
! | TGTCGCTTCACTGGGAAAGT+TGG | - | chr3_3:90717571-90717590 | None:intergenic | 50.0% |
TTCGGACTCATCAGAGCTGT+GGG | - | chr3_3:90717733-90717752 | None:intergenic | 50.0% | |
TTTCGGACTCATCAGAGCTG+TGG | - | chr3_3:90717734-90717753 | None:intergenic | 50.0% | |
TATCGTTGTCCACGAGGCTT+TGG | + | chr3_3:90718095-90718114 | Msa0482990:CDS | 50.0% | |
AATCCAGTTGCAACTCGCAG+AGG | - | chr3_3:90718328-90718347 | None:intergenic | 50.0% | |
GACCCAGCTGAAGAGTAAGA+AGG | - | chr3_3:90718452-90718471 | None:intergenic | 50.0% | |
! | GTGGCATTTTCGACTGCTGA+CGG | + | chr3_3:90718504-90718523 | Msa0482990:CDS | 50.0% |
GTTCAATGGCAACAGGCCTT+GGG | - | chr3_3:90719291-90719310 | None:intergenic | 50.0% | |
AGTTCAATGGCAACAGGCCT+TGG | - | chr3_3:90719292-90719311 | None:intergenic | 50.0% | |
GAGCAGAGTTCAATGGCAAC+AGG | - | chr3_3:90719298-90719317 | None:intergenic | 50.0% | |
TGGCAGCAGCATCAATGAGA+TGG | - | chr3_3:90719522-90719541 | None:intergenic | 50.0% | |
GGGGATTGCTGATGCTATCT+TGG | + | chr3_3:90719603-90719622 | Msa0482990:CDS | 50.0% | |
CATGAGAGGAAGTAGTGCAG+AGG | + | chr3_3:90720069-90720088 | Msa0482990:CDS | 50.0% | |
AGGAAGTAGTGCAGAGGAAG+TGG | + | chr3_3:90720075-90720094 | Msa0482990:CDS | 50.0% | |
TGAGCCAACCATCGTTAGCT+GGG | + | chr3_3:90720110-90720129 | Msa0482990:CDS | 50.0% | |
CTGGGTTGCAGGTGTGATAT+GGG | + | chr3_3:90720128-90720147 | Msa0482990:intron | 50.0% | |
TTTCTGCAAGCGCGATGGAA+AGG | + | chr3_3:90720343-90720362 | Msa0482990:CDS | 50.0% | |
CCACTTAGTGGGATAAGCCT+TGG | - | chr3_3:90720731-90720750 | None:intergenic | 50.0% | |
CCAAGGCTTATCCCACTAAG+TGG | + | chr3_3:90720728-90720747 | Msa0482990:intron | 50.0% | |
CTTATCCCACTAAGTGGGGT+CGG | + | chr3_3:90720734-90720753 | Msa0482990:intron | 50.0% | |
AAGTGGGGTCGGCATTCAAA+TGG | + | chr3_3:90720745-90720764 | Msa0482990:intron | 50.0% | |
ACCCATCTACACCAATGAGC+TGG | + | chr3_3:90721309-90721328 | Msa0482990:three_prime_UTR | 50.0% | |
GCCAGCTCATTGGTGTAGAT+GGG | - | chr3_3:90721313-90721332 | None:intergenic | 50.0% | |
TCGATTGAGACACCCCGGTT+TGG | - | chr3_3:90716076-90716095 | None:intergenic | 55.0% | |
AGGAGGAACGACGCTGATGA+TGG | - | chr3_3:90716124-90716143 | None:intergenic | 55.0% | |
GAGGCGTAGCAGCAATAGAG+AGG | - | chr3_3:90716198-90716217 | None:intergenic | 55.0% | |
TGTGCTTTAGCCCTGATCGG+CGG | + | chr3_3:90717880-90717899 | Msa0482990:intron | 55.0% | |
GCAAGTAGAACCGCCGATCA+GGG | - | chr3_3:90717893-90717912 | None:intergenic | 55.0% | |
!! | GTCCACGAGGCTTTGGAGTA+CGG | + | chr3_3:90718102-90718121 | Msa0482990:CDS | 55.0% |
AAGCCTCTGCGAGTTGCAAC+TGG | + | chr3_3:90718322-90718341 | Msa0482990:CDS | 55.0% | |
AGGCTGCTCTTGTTGCAAGC+AGG | + | chr3_3:90719856-90719875 | Msa0482990:intron | 55.0% | |
! | AGAGGCACATCTGAGGGCTA+TGG | + | chr3_3:90719938-90719957 | Msa0482990:CDS | 55.0% |
GAGGCACATCTGAGGGCTAT+GGG | + | chr3_3:90719939-90719958 | Msa0482990:CDS | 55.0% | |
AGGCACATCTGAGGGCTATG+GGG | + | chr3_3:90719940-90719959 | Msa0482990:CDS | 55.0% | |
CTGAGCCAACCATCGTTAGC+TGG | + | chr3_3:90720109-90720128 | Msa0482990:CDS | 55.0% | |
GCAACCCAGCTAACGATGGT+TGG | - | chr3_3:90720117-90720136 | None:intergenic | 55.0% | |
ACCATCGTTAGCTGGGTTGC+AGG | + | chr3_3:90720117-90720136 | Msa0482990:CDS | 55.0% | |
ACCTGCAACCCAGCTAACGA+TGG | - | chr3_3:90720121-90720140 | None:intergenic | 55.0% | |
GCTGGGTTGCAGGTGTGATA+TGG | + | chr3_3:90720127-90720146 | Msa0482990:intron | 55.0% | |
CCATCGCGCTTGCAGAAAAC+AGG | - | chr3_3:90720341-90720360 | None:intergenic | 55.0% | |
! | CCTGTTTTCTGCAAGCGCGA+TGG | + | chr3_3:90720338-90720357 | Msa0482990:CDS | 55.0% |
GTCATGCTTGCCATCGCCAA+GGG | - | chr3_3:90720637-90720656 | None:intergenic | 55.0% | |
AGTCATGCTTGCCATCGCCA+AGG | - | chr3_3:90720638-90720657 | None:intergenic | 55.0% | |
GAATGCCGACCCCACTTAGT+GGG | - | chr3_3:90720742-90720761 | None:intergenic | 55.0% | |
TGAATGCCGACCCCACTTAG+TGG | - | chr3_3:90720743-90720762 | None:intergenic | 55.0% | |
GTGATGCAGATTGGAGGCAG+CGG | + | chr3_3:90720868-90720887 | Msa0482990:intron | 55.0% | |
GAAAGGAGCTGACGCCATCT+AGG | - | chr3_3:90720937-90720956 | None:intergenic | 55.0% | |
GGCCAGCTCATTGGTGTAGA+TGG | - | chr3_3:90721314-90721333 | None:intergenic | 55.0% | |
CTCTTGTCTTCTGCTGCCGG+AGG | - | chr3_3:90716268-90716287 | None:intergenic | 60.0% | |
CGCAAGTAGAACCGCCGATC+AGG | - | chr3_3:90717894-90717913 | None:intergenic | 60.0% | |
CACCGTACTCCAAAGCCTCG+TGG | - | chr3_3:90718107-90718126 | None:intergenic | 60.0% | |
TTCGACTGCTGACGGAGCAC+TGG | + | chr3_3:90718512-90718531 | Msa0482990:CDS | 60.0% | |
GAGGGCTATGGGGCAGTTCA+CGG | + | chr3_3:90719950-90719969 | Msa0482990:CDS | 60.0% | |
ACTCCCTGACCTGTTGCCCT+TGG | + | chr3_3:90720618-90720637 | Msa0482990:intron | 60.0% | |
TCGCCAAGGGCAACAGGTCA+GGG | - | chr3_3:90720624-90720643 | None:intergenic | 60.0% | |
ATCGCCAAGGGCAACAGGTC+AGG | - | chr3_3:90720625-90720644 | None:intergenic | 60.0% | |
TGACCTGTTGCCCTTGGCGA+TGG | + | chr3_3:90720624-90720643 | Msa0482990:intron | 60.0% | |
TTGCCATCGCCAAGGGCAAC+AGG | - | chr3_3:90720630-90720649 | None:intergenic | 60.0% | |
!! | GACTGCTGACGGAGCACTGG+AGG | + | chr3_3:90718515-90718534 | Msa0482990:CDS | 65.0% |
! | AGCACTGGAGGCAGCTCCTG+CGG | + | chr3_3:90718527-90718546 | Msa0482990:CDS | 65.0% |
GCTGCTGCTGCTGCTGCAGG+AGG | - | chr3_3:90716141-90716160 | None:intergenic | 70.0% | |
GCTGCTGCTGCTGCTGCTGC+AGG | - | chr3_3:90716144-90716163 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 90716071 | 90721362 | 90716071 | ID=Msa0482990;Name=Msa0482990 |
chr3_3 | mRNA | 90716071 | 90721362 | 90716071 | ID=Msa0482990-mRNA-1;Parent=Msa0482990;Name=Msa0482990-mRNA-1;_AED=0.15;_eAED=0.15;_QI=74|1|1|1|0.81|0.66|12|362|375 |
chr3_3 | exon | 90716071 | 90716127 | 90716071 | ID=Msa0482990-mRNA-1:exon:26450;Parent=Msa0482990-mRNA-1 |
chr3_3 | exon | 90716148 | 90716407 | 90716148 | ID=Msa0482990-mRNA-1:exon:26451;Parent=Msa0482990-mRNA-1 |
chr3_3 | exon | 90716503 | 90716616 | 90716503 | ID=Msa0482990-mRNA-1:exon:26452;Parent=Msa0482990-mRNA-1 |
chr3_3 | exon | 90718081 | 90718146 | 90718081 | ID=Msa0482990-mRNA-1:exon:26453;Parent=Msa0482990-mRNA-1 |
chr3_3 | exon | 90718247 | 90718354 | 90718247 | ID=Msa0482990-mRNA-1:exon:26454;Parent=Msa0482990-mRNA-1 |
chr3_3 | exon | 90718465 | 90718548 | 90718465 | ID=Msa0482990-mRNA-1:exon:26455;Parent=Msa0482990-mRNA-1 |
chr3_3 | exon | 90719601 | 90719702 | 90719601 | ID=Msa0482990-mRNA-1:exon:26456;Parent=Msa0482990-mRNA-1 |
chr3_3 | exon | 90719858 | 90719971 | 90719858 | ID=Msa0482990-mRNA-1:exon:26457;Parent=Msa0482990-mRNA-1 |
chr3_3 | exon | 90720058 | 90720138 | 90720058 | ID=Msa0482990-mRNA-1:exon:26458;Parent=Msa0482990-mRNA-1 |
chr3_3 | exon | 90720323 | 90720442 | 90720323 | ID=Msa0482990-mRNA-1:exon:26459;Parent=Msa0482990-mRNA-1 |
chr3_3 | exon | 90720877 | 90721004 | 90720877 | ID=Msa0482990-mRNA-1:exon:26460;Parent=Msa0482990-mRNA-1 |
chr3_3 | exon | 90721033 | 90721362 | 90721033 | ID=Msa0482990-mRNA-1:exon:26461;Parent=Msa0482990-mRNA-1 |
chr3_3 | five_prime_UTR | 90716071 | 90716127 | 90716071 | ID=Msa0482990-mRNA-1:five_prime_utr;Parent=Msa0482990-mRNA-1 |
chr3_3 | five_prime_UTR | 90716148 | 90716164 | 90716148 | ID=Msa0482990-mRNA-1:five_prime_utr;Parent=Msa0482990-mRNA-1 |
chr3_3 | CDS | 90716165 | 90716407 | 90716165 | ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1 |
chr3_3 | CDS | 90716503 | 90716616 | 90716503 | ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1 |
chr3_3 | CDS | 90718081 | 90718146 | 90718081 | ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1 |
chr3_3 | CDS | 90718247 | 90718354 | 90718247 | ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1 |
chr3_3 | CDS | 90718465 | 90718548 | 90718465 | ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1 |
chr3_3 | CDS | 90719601 | 90719702 | 90719601 | ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1 |
chr3_3 | CDS | 90719858 | 90719971 | 90719858 | ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1 |
chr3_3 | CDS | 90720058 | 90720138 | 90720058 | ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1 |
chr3_3 | CDS | 90720323 | 90720442 | 90720323 | ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1 |
chr3_3 | CDS | 90720877 | 90720972 | 90720877 | ID=Msa0482990-mRNA-1:cds;Parent=Msa0482990-mRNA-1 |
chr3_3 | three_prime_UTR | 90720973 | 90721004 | 90720973 | ID=Msa0482990-mRNA-1:three_prime_utr;Parent=Msa0482990-mRNA-1 |
chr3_3 | three_prime_UTR | 90721033 | 90721362 | 90721033 | ID=Msa0482990-mRNA-1:three_prime_utr;Parent=Msa0482990-mRNA-1 |
Gene Sequence |
Protein sequence |