Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397640 | XP_013448504.1 | 99.194 | 248 | 2 | 0 | 1 | 248 | 1 | 248 | 1.89e-177 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397640 | sp|Q9M3V8|RS6_ASPOF | 92.742 | 248 | 17 | 1 | 1 | 248 | 1 | 247 | 4.86e-168 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397640 | A0A072TZB9 | 99.194 | 248 | 2 | 0 | 1 | 248 | 1 | 248 | 9.00e-178 | 497 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0402070 | Msa1397640 | -0.809133 | 2.200008e-50 | -8.615850e-47 |
| Msa1060230 | Msa1397640 | 0.841882 | 3.629273e-58 | -8.615850e-47 |
| Msa1147650 | Msa1397640 | 0.886958 | 2.172403e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397640 | MtrunA17_Chr7g0234621 | 99.194 | 248 | 2 | 0 | 1 | 248 | 1 | 248 | 0.0 | 497 |
| Msa1397640 | MtrunA17_Chr4g0047021 | 95.968 | 248 | 10 | 0 | 1 | 248 | 1 | 248 | 1.58e-175 | 482 |
| Msa1397640 | MtrunA17_Chr2g0282411 | 95.968 | 248 | 10 | 0 | 1 | 248 | 1 | 248 | 1.89e-175 | 482 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397640 | AT5G10360.1 | 91.129 | 248 | 22 | 0 | 1 | 248 | 1 | 248 | 1.36e-165 | 457 |
| Msa1397640 | AT4G31700.1 | 90.800 | 250 | 21 | 1 | 1 | 248 | 1 | 250 | 2.56e-157 | 437 |
| Msa1397640 | AT5G10360.2 | 73.387 | 248 | 14 | 1 | 1 | 248 | 1 | 196 | 2.55e-121 | 343 |
| Msa1397640 | AT4G31700.2 | 89.362 | 188 | 18 | 1 | 63 | 248 | 1 | 188 | 1.63e-107 | 308 |
Find 103 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCCTTGCTCTCTTTCTT+TGG | 0.173886 | tig0022176:-3303 | None:intergenic |
| ATTGTTCTTGGTGTCATTCT+TGG | 0.201176 | tig0022176:-289 | None:intergenic |
| GAATTTGCAGACGAGCATTT+TGG | 0.208379 | tig0022176:+1152 | Msa1397640:intron |
| GGCGATTCTCTTCTTCTTAT+CGG | 0.223662 | tig0022176:-3326 | None:intergenic |
| AGCGAAGTTTATATTGTTCT+TGG | 0.225712 | tig0022176:-301 | None:intergenic |
| CATCGATTTCAAGCTTCTTC+TGG | 0.243453 | tig0022176:-589 | None:intergenic |
| ACTTTCATAGAATAGAATTT+TGG | 0.249560 | tig0022176:+3749 | Msa1397640:three_prime_UTR |
| CATTATATCCTCCCACAATT+AGG | 0.258816 | tig0022176:+3661 | Msa1397640:three_prime_UTR |
| ACCAGAAGCTTCTTGCTTCC+AGG | 0.274677 | tig0022176:+3374 | Msa1397640:CDS |
| CGGATCTTGGACACTCTCTT+AGG | 0.280487 | tig0022176:-1869 | None:intergenic |
| TCATACCTTCACCACAGTTT+TGG | 0.301574 | tig0022176:+3491 | Msa1397640:three_prime_UTR |
| TTGAGATTAGACTTGTAAAA+TGG | 0.310062 | tig0022176:+3801 | Msa1397640:three_prime_UTR |
| TTATTTGGTTGCAGGGAAAA+AGG | 0.319097 | tig0022176:+3234 | Msa1397640:intron |
| TGGTGCTAACAGGAATTTAA+AGG | 0.325501 | tig0022176:+1300 | Msa1397640:intron |
| AGTAACTAGTCTTTGTATCT+TGG | 0.331940 | tig0022176:-3269 | None:intergenic |
| TTGTTCTTGGTGTCATTCTT+GGG | 0.344635 | tig0022176:-288 | None:intergenic |
| GTTGAAAAGCTTACGGATCT+TGG | 0.369922 | tig0022176:-1882 | None:intergenic |
| CTCTTTCTTTGGAGTGTAAG+AGG | 0.370544 | tig0022176:-3292 | None:intergenic |
| GTGTTCGTCTGTTGCTTCAC+AGG | 0.378377 | tig0022176:+1397 | Msa1397640:CDS |
| ACCTGGAAGCAAGAAGCTTC+TGG | 0.379692 | tig0022176:-3375 | None:intergenic |
| AGACCTTTCTGTTCTGAACT+TGG | 0.382910 | tig0022176:+1778 | Msa1397640:CDS |
| GTCAGGACTCCCTGCTTCAT+TGG | 0.387254 | tig0022176:-1366 | None:intergenic |
| GTAACTAGTCTTTGTATCTT+GGG | 0.392706 | tig0022176:-3268 | None:intergenic |
| CTCTTAGGACCTCTCATCCT+TGG | 0.406199 | tig0022176:-1854 | None:intergenic |
| GGATTTCACAAGAGGTCAAT+GGG | 0.417305 | tig0022176:+1182 | Msa1397640:CDS |
| TGCCTTAGCACTGGAAATCC+TGG | 0.423380 | tig0022176:-3446 | None:intergenic |
| GCTTCTTGCTTCCAGGTTGA+AGG | 0.423629 | tig0022176:+3381 | Msa1397640:CDS |
| CTTGCTTTCGTGGGCATGGA+AGG | 0.423949 | tig0022176:+1705 | Msa1397640:CDS |
| TCTATTCTATGAAAGTTGTA+AGG | 0.442599 | tig0022176:-3742 | None:intergenic |
| TCCTTGTTTGTCACAACCTC+CGG | 0.446389 | tig0022176:-1340 | None:intergenic |
| TTCATAAGAATCCTAATTGT+GGG | 0.452966 | tig0022176:-3672 | None:intergenic |
| AAGTTCAGAACAGAAAGGTC+TGG | 0.453108 | tig0022176:-1776 | None:intergenic |
| CTCTCTCTGCTCCTTCAACC+TGG | 0.453539 | tig0022176:-3392 | None:intergenic |
| TTCTTCTGGCATCCAGTGGT+GGG | 0.454271 | tig0022176:-575 | None:intergenic |
| TGTTCGTCTGTTGCTTCACA+GGG | 0.455437 | tig0022176:+1398 | Msa1397640:CDS |
| CTTCTTCTGGCATCCAGTGG+TGG | 0.456547 | tig0022176:-576 | None:intergenic |
| GAAGACATGCGCACGGTAAG+AGG | 0.460524 | tig0022176:-346 | None:intergenic |
| TGTAGAAGATTGCAATATGA+AGG | 0.461335 | tig0022176:+412 | Msa1397640:exon |
| TTGTAAAATGGTGCGAGTAT+AGG | 0.463897 | tig0022176:+3813 | Msa1397640:three_prime_UTR |
| AGCAACAGACGAACACGGCC+AGG | 0.465092 | tig0022176:-1390 | None:intergenic |
| ACTCCTTGCTTTCGTGGGCA+TGG | 0.465842 | tig0022176:+1701 | Msa1397640:CDS |
| CTTCTCAACATCGGTCAGGC+CGG | 0.479719 | tig0022176:-1831 | None:intergenic |
| ACAAGGATTTCCAATGAAGC+AGG | 0.479949 | tig0022176:+1356 | Msa1397640:CDS |
| GAACTTGGTAATTGTGAAGA+AGG | 0.488543 | tig0022176:+1793 | Msa1397640:CDS |
| TAGACAGGTTGAAAAGCTTA+CGG | 0.491080 | tig0022176:-1889 | None:intergenic |
| ACAGGAACTCCTTGCTTTCG+TGG | 0.493316 | tig0022176:+1695 | Msa1397640:intron |
| CGCAGGAGGAAGTCCGTTCG+TGG | 0.499221 | tig0022176:+1740 | Msa1397640:CDS |
| CGTGGGCATGGAAGGCGTAA+TGG | 0.499837 | tig0022176:+1713 | Msa1397640:CDS |
| TTCTCAACATCGGTCAGGCC+GGG | 0.500903 | tig0022176:-1830 | None:intergenic |
| GAGGTCAATGGGGATGCTCT+TGG | 0.504931 | tig0022176:+1193 | Msa1397640:CDS |
| TTGGCTTCTCAACATCGGTC+AGG | 0.507183 | tig0022176:-1835 | None:intergenic |
| AGGATTTCACAAGAGGTCAA+TGG | 0.507253 | tig0022176:+1181 | Msa1397640:CDS |
| ATCCAGGATTTCCAGTGCTA+AGG | 0.509483 | tig0022176:+3444 | Msa1397640:CDS |
| TCACATCATCATCCTTAGAC+AGG | 0.513297 | tig0022176:-1904 | None:intergenic |
| ATTCATAAGAATCCTAATTG+TGG | 0.517802 | tig0022176:-3673 | None:intergenic |
| TCTGTCATGACAAATACAAA+TGG | 0.528698 | tig0022176:+3534 | Msa1397640:three_prime_UTR |
| AGTTCAGAACAGAAAGGTCT+GGG | 0.537667 | tig0022176:-1775 | None:intergenic |
| TGTTGTAAATGTCCTACGGT+AGG | 0.539789 | tig0022176:-1942 | None:intergenic |
| AGGACATTTACAACAAAAGC+TGG | 0.541932 | tig0022176:+1950 | Msa1397640:CDS |
| AAGCAGGGAGTCCTGACCCC+TGG | 0.546007 | tig0022176:+1372 | Msa1397640:CDS |
| AAGCTTCTTCTGGCATCCAG+TGG | 0.547317 | tig0022176:-579 | None:intergenic |
| GCTGACAATGCACCCACGAA+CGG | 0.547404 | tig0022176:-1753 | None:intergenic |
| GCAACAGACGAACACGGCCA+GGG | 0.547657 | tig0022176:-1389 | None:intergenic |
| CAGGAACTCCTTGCTTTCGT+GGG | 0.551855 | tig0022176:+1696 | Msa1397640:intron |
| GGCGTAATGGAGAGCGCAGG+AGG | 0.556424 | tig0022176:+1726 | Msa1397640:CDS |
| CACTCCAAAGAAAGAGAGCA+AGG | 0.560832 | tig0022176:+3299 | Msa1397640:CDS |
| AATGTTGCGAATCCCACCAC+TGG | 0.561300 | tig0022176:+563 | Msa1397640:CDS |
| TAAGGCAGCTGTCACCGCCT+AGG | 0.568165 | tig0022176:+3462 | Msa1397640:CDS |
| CTTCCATGCCCACGAAAGCA+AGG | 0.568809 | tig0022176:-1704 | None:intergenic |
| CAAGACCAAAACTGTGGTGA+AGG | 0.569427 | tig0022176:-3496 | None:intergenic |
| GGACAAGAGGATTTCACAAG+AGG | 0.571370 | tig0022176:+1174 | Msa1397640:CDS |
| CAACAGACGAACACGGCCAG+GGG | 0.576712 | tig0022176:-1388 | None:intergenic |
| ACCGCCGCGTCGGAGTGTCT+CGG | 0.586287 | tig0022176:-386 | None:intergenic |
| TGACCGATGTTGAGAAGCCA+AGG | 0.592857 | tig0022176:+1837 | Msa1397640:CDS |
| CTCAATTTCGAGAACAAGGT+AGG | 0.593837 | tig0022176:-3783 | None:intergenic |
| GGTGACAGCTGCCTTAGCAC+TGG | 0.594937 | tig0022176:-3455 | None:intergenic |
| TGAAGGTATGACAGCAACCT+AGG | 0.597675 | tig0022176:-3479 | None:intergenic |
| CATCCTTGGCTTCTCAACAT+CGG | 0.602359 | tig0022176:-1840 | None:intergenic |
| GTTGAGAAGCCAAGGATGAG+AGG | 0.608216 | tig0022176:+1845 | Msa1397640:CDS |
| TAATCTCAATTTCGAGAACA+AGG | 0.608980 | tig0022176:-3787 | None:intergenic |
| TTCTACAACAACCGCCGCGT+CGG | 0.614344 | tig0022176:-396 | None:intergenic |
| AATCGCCAAGGCAAAATCAG+AGG | 0.625414 | tig0022176:+3342 | Msa1397640:CDS |
| GCAGGAGGAAGTCCGTTCGT+GGG | 0.626781 | tig0022176:+1741 | Msa1397640:CDS |
| CAAGGATTTCCAATGAAGCA+GGG | 0.632810 | tig0022176:+1357 | Msa1397640:CDS |
| GAAGGCGTAATGGAGAGCGC+AGG | 0.640543 | tig0022176:+1723 | Msa1397640:CDS |
| CAATGGGGATGCTCTTGGTG+AGG | 0.642872 | tig0022176:+1198 | Msa1397640:CDS |
| AACTTGGTAATTGTGAAGAA+GGG | 0.654902 | tig0022176:+1794 | Msa1397640:CDS |
| TGTGAAGCAACAGACGAACA+CGG | 0.657981 | tig0022176:-1395 | None:intergenic |
| TCCGAGACACTCCGACGCGG+CGG | 0.663751 | tig0022176:+385 | Msa1397640:five_prime_UTR |
| TAAGAAGAAGAGAATCGCCA+AGG | 0.666176 | tig0022176:+3330 | Msa1397640:CDS |
| AAGGGTGAGAATGATTTACC+CGG | 0.666590 | tig0022176:+1812 | Msa1397640:CDS |
| TTACCAAGTTCAGAACAGAA+AGG | 0.669660 | tig0022176:-1781 | None:intergenic |
| GAATGCTGAAGACATGCGCA+CGG | 0.670749 | tig0022176:-353 | None:intergenic |
| AAATGGTGCGAGTATAGGTG+TGG | 0.677858 | tig0022176:+3818 | Msa1397640:three_prime_UTR |
| ATAAGAATCCTAATTGTGGG+AGG | 0.682487 | tig0022176:-3669 | None:intergenic |
| ACCGGAGGTTGTGACAAACA+AGG | 0.687549 | tig0022176:+1339 | Msa1397640:CDS |
| AAATAACAAGACCAAAACTG+TGG | 0.697491 | tig0022176:-3502 | None:intergenic |
| AGTATGTCAACACCTACCGT+AGG | 0.700274 | tig0022176:+1930 | Msa1397640:CDS |
| GTTCGTCTGTTGCTTCACAG+GGG | 0.715022 | tig0022176:+1399 | Msa1397640:CDS |
| GATTTCACAAGAGGTCAATG+GGG | 0.738312 | tig0022176:+1183 | Msa1397640:CDS |
| TGTCTAAGGATGATGATGTG+AGG | 0.746514 | tig0022176:+1906 | Msa1397640:CDS |
| CTCTCCGAGACACTCCGACG+CGG | 0.758499 | tig0022176:+382 | Msa1397640:five_prime_UTR |
| AGGTATGACAGCAACCTAGG+CGG | 0.774656 | tig0022176:-3476 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATAAACAAGTAAAAT+GGG | - | tig0022176:640-659 | None:intergenic | 10.0% |
| !!! | TTTAAAATAAACAAGTAAAA+TGG | - | tig0022176:641-660 | None:intergenic | 10.0% |
| !!! | TACAAATTTAAAATCTTTTT+GGG | - | tig0022176:729-748 | None:intergenic | 10.0% |
| !! | ATAATAATTTATCATCAAAT+AGG | - | tig0022176:1528-1547 | None:intergenic | 10.0% |
| !!! | AATTTGTTTTTAATAGAAAT+AGG | - | tig0022176:1622-1641 | None:intergenic | 10.0% |
| !! | CATTCTATTAAATATAAATA+AGG | - | tig0022176:2840-2859 | None:intergenic | 10.0% |
| !!! | ATTTTGATATATATTCTAAA+TGG | + | tig0022176:3205-3224 | Msa1397640:intron | 10.0% |
| !! | TAAAATAAACAAGTAAAATG+GGG | - | tig0022176:639-658 | None:intergenic | 15.0% |
| !!! | GTACAAATTTAAAATCTTTT+TGG | - | tig0022176:730-749 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTGTGATATATAT+TGG | + | tig0022176:1055-1074 | Msa1397640:intron | 15.0% |
| !!! | GATTGATATTTTAATAAACA+AGG | - | tig0022176:2024-2043 | None:intergenic | 15.0% |
| !! | TTTATTAAAATATCAATCTG+TGG | + | tig0022176:2026-2045 | Msa1397640:intron | 15.0% |
| !! | TTTAACCTTATTATATCAAT+CGG | + | tig0022176:2586-2605 | Msa1397640:intron | 15.0% |
| !! | TTAAAAATAGTAAAGATCAT+TGG | - | tig0022176:3858-3877 | None:intergenic | 15.0% |
| !! | AAAATAAACAAGTAAAATGG+GGG | - | tig0022176:638-657 | None:intergenic | 20.0% |
| !!! | TAAATCATTGTTCATTTTCA+CGG | + | tig0022176:657-676 | Msa1397640:intron | 20.0% |
| !! | ATTGATTAGTATAAGAGTTA+AGG | + | tig0022176:762-781 | Msa1397640:intron | 20.0% |
| !! | TTGATTAGTATAAGAGTTAA+GGG | + | tig0022176:763-782 | Msa1397640:intron | 20.0% |
| !! | GTGTGATGATATATTAATAT+TGG | + | tig0022176:1083-1102 | Msa1397640:intron | 20.0% |
| !! | GATGATATATTAATATTGGT+TGG | + | tig0022176:1087-1106 | Msa1397640:intron | 20.0% |
| !!! | TACTATTATATCTTTTGAGT+CGG | + | tig0022176:1578-1597 | Msa1397640:intron | 20.0% |
| !!! | GTTTTTAATAGAAATAGGTA+GGG | - | tig0022176:1617-1636 | None:intergenic | 20.0% |
| !!! | TGTTTTTAATAGAAATAGGT+AGG | - | tig0022176:1618-1637 | None:intergenic | 20.0% |
| !! | AATAGAAAAATTACAAGGAT+GGG | - | tig0022176:1984-2003 | None:intergenic | 20.0% |
| !! | TAATAGAAAAATTACAAGGA+TGG | - | tig0022176:1985-2004 | None:intergenic | 20.0% |
| !! | CAACTAATAGAAAAATTACA+AGG | - | tig0022176:1989-2008 | None:intergenic | 20.0% |
| !! | AAAGTTTAACAATTTGATAC+AGG | - | tig0022176:2137-2156 | None:intergenic | 20.0% |
| !! | ATATATATTCTAAATGGTAC+TGG | + | tig0022176:3211-3230 | Msa1397640:intron | 20.0% |
| !!! | ACTTTCATAGAATAGAATTT+TGG | + | tig0022176:3749-3768 | Msa1397640:three_prime_UTR | 20.0% |
| !!! | TTTAATTTTTTATTGTCCTC+CGG | + | tig0022176:3873-3892 | Msa1397640:three_prime_UTR | 20.0% |
| ! | TGTAAACAACTTAGATTGTT+TGG | + | tig0022176:818-837 | Msa1397640:intron | 25.0% |
| !! | TATTTCTATGAATCTGAACA+TGG | - | tig0022176:1119-1138 | None:intergenic | 25.0% |
| ! | TTTCTATTAGTTGTCTCATT+TGG | + | tig0022176:1996-2015 | Msa1397640:intron | 25.0% |
| ! | TTAAAAAGAGGTCCATATTA+GGG | - | tig0022176:2074-2093 | None:intergenic | 25.0% |
| ! | TTTAAAAAGAGGTCCATATT+AGG | - | tig0022176:2075-2094 | None:intergenic | 25.0% |
| !! | TAATATGGACCTCTTTTTAA+AGG | + | tig0022176:2074-2093 | Msa1397640:intron | 25.0% |
| !! | AATATGGACCTCTTTTTAAA+GGG | + | tig0022176:2075-2094 | Msa1397640:intron | 25.0% |
| ! | ATCAAAATCAAGAAGGATAT+TGG | - | tig0022176:2255-2274 | None:intergenic | 25.0% |
| ! | TAGGTTTATCAAAATCAAGA+AGG | - | tig0022176:2262-2281 | None:intergenic | 25.0% |
| ! | ATAGTTGTTAGCATAGAAAT+AGG | - | tig0022176:2281-2300 | None:intergenic | 25.0% |
| ! | AGTGAAGTAAATGAATAAAG+CGG | + | tig0022176:2350-2369 | Msa1397640:intron | 25.0% |
| ! | CTATGTATCTTTGTAAAATC+TGG | + | tig0022176:2407-2426 | Msa1397640:intron | 25.0% |
| ! | TCTTAAAGCTGTATTATTCA+CGG | - | tig0022176:2445-2464 | None:intergenic | 25.0% |
| ! | TGTAACCGATTGATATAATA+AGG | - | tig0022176:2594-2613 | None:intergenic | 25.0% |
| !! | AATATGCACCCTTTAAAAAA+TGG | - | tig0022176:2659-2678 | None:intergenic | 25.0% |
| !!! | TTTTTTAAAGGGTGCATATT+AGG | + | tig0022176:2659-2678 | Msa1397640:intron | 25.0% |
| !!! | TTTTTAAAGGGTGCATATTA+GGG | + | tig0022176:2660-2679 | Msa1397640:intron | 25.0% |
| ! | CAAACTGTAACTGAATTATA+GGG | - | tig0022176:2689-2708 | None:intergenic | 25.0% |
| ! | AAACTACACAAACTTTATGA+TGG | - | tig0022176:2910-2929 | None:intergenic | 25.0% |
| !!! | ACTTATAGACTCTTTTGAAA+TGG | + | tig0022176:2958-2977 | Msa1397640:intron | 25.0% |
| ! | ACAGGATATAGTATATTAAC+AGG | - | tig0022176:3027-3046 | None:intergenic | 25.0% |
| !!! | CTAAAATCAATTTGTTACAC+AGG | - | tig0022176:3127-3146 | None:intergenic | 25.0% |
| !!! | ATTGATTTTAGTCAATACTC+TGG | + | tig0022176:3136-3155 | Msa1397640:intron | 25.0% |
| ! | ATCAGTCCAAATAATTTCAA+TGG | - | tig0022176:3177-3196 | None:intergenic | 25.0% |
| !!! | TTGGTCTTGTTATTTTACAA+TGG | + | tig0022176:3510-3529 | Msa1397640:three_prime_UTR | 25.0% |
| ! | TTCATAAGAATCCTAATTGT+GGG | - | tig0022176:3675-3694 | None:intergenic | 25.0% |
| ! | ATTCATAAGAATCCTAATTG+TGG | - | tig0022176:3676-3695 | None:intergenic | 25.0% |
| !!! | AAGTCATGATTCAGTTTTTT+CGG | - | tig0022176:3707-3726 | None:intergenic | 25.0% |
| ! | AAAAAACTGAATCATGACTT+GGG | + | tig0022176:3707-3726 | Msa1397640:three_prime_UTR | 25.0% |
| ! | TCTATTCTATGAAAGTTGTA+AGG | - | tig0022176:3745-3764 | None:intergenic | 25.0% |
| ! | TTGAGATTAGACTTGTAAAA+TGG | + | tig0022176:3801-3820 | Msa1397640:three_prime_UTR | 25.0% |
| AGCGAAGTTTATATTGTTCT+TGG | - | tig0022176:304-323 | None:intergenic | 30.0% | |
| TGTAGAAGATTGCAATATGA+AGG | + | tig0022176:412-431 | Msa1397640:exon | 30.0% | |
| !!! | TGTTTTGAGAAAGTGAAATG+TGG | + | tig0022176:792-811 | Msa1397640:intron | 30.0% |
| ATAATGTTTGATGTCAGTGT+AGG | - | tig0022176:856-875 | None:intergenic | 30.0% | |
| !!! | GGATACGTTTTTAAAATCAC+CGG | + | tig0022176:1321-1340 | Msa1397640:CDS | 30.0% |
| ATCCTAAAAATTACACTGAC+AGG | - | tig0022176:1441-1460 | None:intergenic | 30.0% | |
| ! | AACAGTATATTGTTGACTGT+AGG | + | tig0022176:1474-1493 | Msa1397640:intron | 30.0% |
| ! | TTTTCATTGTTCACATGAAC+AGG | + | tig0022176:1677-1696 | Msa1397640:intron | 30.0% |
| ! | AACTTGGTAATTGTGAAGAA+GGG | + | tig0022176:1794-1813 | Msa1397640:CDS | 30.0% |
| !! | CTTTTGTTGTAAATGTCCTA+CGG | - | tig0022176:1949-1968 | None:intergenic | 30.0% |
| TGTGGATGTGATATAATTCA+GGG | + | tig0022176:2044-2063 | Msa1397640:intron | 30.0% | |
| !! | TTTTTAAAGGGTCCAAACAT+GGG | + | tig0022176:2087-2106 | Msa1397640:intron | 30.0% |
| !! | TTCCATCAAGCTTTAAAACT+TGG | + | tig0022176:2323-2342 | Msa1397640:intron | 30.0% |
| !!! | TTCCAAGTTTTAAAGCTTGA+TGG | - | tig0022176:2328-2347 | None:intergenic | 30.0% |
| AACTTAACAAACATGTGTGT+TGG | + | tig0022176:2470-2489 | Msa1397640:intron | 30.0% | |
| TTTAAAAAATGGTCCAACCA+TGG | - | tig0022176:2648-2667 | None:intergenic | 30.0% | |
| !!! | ATGGTTGGACCATTTTTTAA+AGG | + | tig0022176:2647-2666 | Msa1397640:intron | 30.0% |
| !!! | TGGTTGGACCATTTTTTAAA+GGG | + | tig0022176:2648-2667 | Msa1397640:intron | 30.0% |
| !! | TTTTAAAGGGTGCATATTAG+GGG | + | tig0022176:2661-2680 | Msa1397640:intron | 30.0% |
| GCAAACTGTAACTGAATTAT+AGG | - | tig0022176:2690-2709 | None:intergenic | 30.0% | |
| TCACATAACTCATAACAGAA+GGG | - | tig0022176:2773-2792 | None:intergenic | 30.0% | |
| TTCACATAACTCATAACAGA+AGG | - | tig0022176:2774-2793 | None:intergenic | 30.0% | |
| CGATTCATTTACTCATTAGA+AGG | + | tig0022176:2814-2833 | Msa1397640:intron | 30.0% | |
| !!! | GTTTGTGTAGTTTTGTTGAT+TGG | + | tig0022176:2917-2936 | Msa1397640:intron | 30.0% |
| !!! | TGTTGATTGGTTTTAGTACT+TGG | + | tig0022176:2930-2949 | Msa1397640:intron | 30.0% |
| !! | AGTTTGGTGTCTAACATTAA+GGG | - | tig0022176:2988-3007 | None:intergenic | 30.0% |
| CTTAAATTATACACTACTCG+TGG | - | tig0022176:3076-3095 | None:intergenic | 30.0% | |
| !! | TTTAGTCAATACTCTGGTTT+TGG | + | tig0022176:3142-3161 | Msa1397640:intron | 30.0% |
| TTCAGGCCATTGAAATTATT+TGG | + | tig0022176:3168-3187 | Msa1397640:intron | 30.0% | |
| !! | TCTAAATGGTACTGGTTATT+TGG | + | tig0022176:3219-3238 | Msa1397640:intron | 30.0% |
| !! | GTAACTAGTCTTTGTATCTT+GGG | - | tig0022176:3271-3290 | None:intergenic | 30.0% |
| !! | AGTAACTAGTCTTTGTATCT+TGG | - | tig0022176:3272-3291 | None:intergenic | 30.0% |
| AAATAACAAGACCAAAACTG+TGG | - | tig0022176:3505-3524 | None:intergenic | 30.0% | |
| TCTGTCATGACAAATACAAA+TGG | + | tig0022176:3534-3553 | Msa1397640:three_prime_UTR | 30.0% | |
| GAAAAAACTGAATCATGACT+TGG | + | tig0022176:3706-3725 | Msa1397640:three_prime_UTR | 30.0% | |
| TAATCTCAATTTCGAGAACA+AGG | - | tig0022176:3790-3809 | None:intergenic | 30.0% | |
| ACGGTAAGAGGAAAAAACTA+GGG | - | tig0022176:337-356 | None:intergenic | 35.0% | |
| AACAAAAGCAACGAGAGTTA+GGG | - | tig0022176:454-473 | None:intergenic | 35.0% | |
| AAACAAAAGCAACGAGAGTT+AGG | - | tig0022176:455-474 | None:intergenic | 35.0% | |
| TCAACTTAACGTGTTAGTGT+CGG | - | tig0022176:880-899 | None:intergenic | 35.0% | |
| TTGATTGTAATCACATGTGC+TGG | + | tig0022176:930-949 | Msa1397640:intron | 35.0% | |
| ! | AATTTGCAGACGAGCATTTT+GGG | + | tig0022176:1153-1172 | Msa1397640:intron | 35.0% |
| ! | TGGTGCTAACAGGAATTTAA+AGG | + | tig0022176:1300-1319 | Msa1397640:intron | 35.0% |
| !!! | TACGTTTTTAAAATCACCGG+AGG | + | tig0022176:1324-1343 | Msa1397640:CDS | 35.0% |
| ! | AGCCTGTCAGTGTAATTTTT+AGG | + | tig0022176:1436-1455 | Msa1397640:intron | 35.0% |
| ! | AGTATATTGTTGACTGTAGG+TGG | + | tig0022176:1477-1496 | Msa1397640:intron | 35.0% |
| TTACCAAGTTCAGAACAGAA+AGG | - | tig0022176:1784-1803 | None:intergenic | 35.0% | |
| ! | GAACTTGGTAATTGTGAAGA+AGG | + | tig0022176:1793-1812 | Msa1397640:CDS | 35.0% |
| ! | TAGACAGGTTGAAAAGCTTA+CGG | - | tig0022176:1892-1911 | None:intergenic | 35.0% |
| ! | TAAGCTTTTCAACCTGTCTA+AGG | + | tig0022176:1892-1911 | Msa1397640:CDS | 35.0% |
| AGGACATTTACAACAAAAGC+TGG | + | tig0022176:1950-1969 | Msa1397640:CDS | 35.0% | |
| CTGTGGATGTGATATAATTC+AGG | + | tig0022176:2043-2062 | Msa1397640:intron | 35.0% | |
| GTGGATGTGATATAATTCAG+GGG | + | tig0022176:2045-2064 | Msa1397640:intron | 35.0% | |
| ! | TGTTTGGACCCTTTAAAAAG+AGG | - | tig0022176:2086-2105 | None:intergenic | 35.0% |
| !! | CTTTTTAAAGGGTCCAAACA+TGG | + | tig0022176:2086-2105 | Msa1397640:intron | 35.0% |
| AATTTGATACAGGCAATAGC+CGG | - | tig0022176:2127-2146 | None:intergenic | 35.0% | |
| TGTTATTCTGCTCAACTTGT+CGG | + | tig0022176:2162-2181 | Msa1397640:intron | 35.0% | |
| ATTACATCGGATATTGGACT+GGG | - | tig0022176:2225-2244 | None:intergenic | 35.0% | |
| ATCAAGAAGGATATTGGACT+GGG | - | tig0022176:2249-2268 | None:intergenic | 35.0% | |
| AATCAAGAAGGATATTGGAC+TGG | - | tig0022176:2250-2269 | None:intergenic | 35.0% | |
| TTAACAAACATGTGTGTTGG+AGG | + | tig0022176:2473-2492 | Msa1397640:intron | 35.0% | |
| TATCAATCGGTTACATTACC+TGG | + | tig0022176:2599-2618 | Msa1397640:intron | 35.0% | |
| CACATAACTCATAACAGAAG+GGG | - | tig0022176:2772-2791 | None:intergenic | 35.0% | |
| ! | TTTCCTAGAGTAGTGTCATT+TGG | + | tig0022176:2863-2882 | Msa1397640:intron | 35.0% |
| !! | CAGTTTGGTGTCTAACATTA+AGG | - | tig0022176:2989-3008 | None:intergenic | 35.0% |
| !!! | TACTCTGGTTTTGGTTATTC+AGG | + | tig0022176:3151-3170 | Msa1397640:intron | 35.0% |
| TTATTTGGTTGCAGGGAAAA+AGG | + | tig0022176:3234-3253 | Msa1397640:intron | 35.0% | |
| GTTTAGCAAAAAAGAGATCC+AGG | + | tig0022176:3428-3447 | Msa1397640:CDS | 35.0% | |
| CATTATATCCTCCCACAATT+AGG | + | tig0022176:3661-3680 | Msa1397640:three_prime_UTR | 35.0% | |
| ATAAGAATCCTAATTGTGGG+AGG | - | tig0022176:3672-3691 | None:intergenic | 35.0% | |
| !!! | CATGATTCAGTTTTTTCGGA+GGG | - | tig0022176:3703-3722 | None:intergenic | 35.0% |
| !!! | TCATGATTCAGTTTTTTCGG+AGG | - | tig0022176:3704-3723 | None:intergenic | 35.0% |
| TTGTAAAATGGTGCGAGTAT+AGG | + | tig0022176:3813-3832 | Msa1397640:three_prime_UTR | 35.0% | |
| CACGGTAAGAGGAAAAAACT+AGG | - | tig0022176:338-357 | None:intergenic | 40.0% | |
| !! | CATCGATTTCAAGCTTCTTC+TGG | - | tig0022176:592-611 | None:intergenic | 40.0% |
| ! | TGATGGACGGTGACAAATAT+TGG | + | tig0022176:953-972 | Msa1397640:intron | 40.0% |
| ! | GAATTTGCAGACGAGCATTT+TGG | + | tig0022176:1152-1171 | Msa1397640:intron | 40.0% |
| AGGATTTCACAAGAGGTCAA+TGG | + | tig0022176:1181-1200 | Msa1397640:CDS | 40.0% | |
| GGATTTCACAAGAGGTCAAT+GGG | + | tig0022176:1182-1201 | Msa1397640:CDS | 40.0% | |
| GATTTCACAAGAGGTCAATG+GGG | + | tig0022176:1183-1202 | Msa1397640:CDS | 40.0% | |
| GACATTTGCCATTATATCGC+TGG | + | tig0022176:1280-1299 | Msa1397640:intron | 40.0% | |
| TGTTAGCACCAGCGATATAA+TGG | - | tig0022176:1291-1310 | None:intergenic | 40.0% | |
| ! | ATTATATCGCTGGTGCTAAC+AGG | + | tig0022176:1290-1309 | Msa1397640:intron | 40.0% |
| ACAAGGATTTCCAATGAAGC+AGG | + | tig0022176:1356-1375 | Msa1397640:CDS | 40.0% | |
| CAAGGATTTCCAATGAAGCA+GGG | + | tig0022176:1357-1376 | Msa1397640:CDS | 40.0% | |
| AGTTCAGAACAGAAAGGTCT+GGG | - | tig0022176:1778-1797 | None:intergenic | 40.0% | |
| AAGTTCAGAACAGAAAGGTC+TGG | - | tig0022176:1779-1798 | None:intergenic | 40.0% | |
| ! | AGACCTTTCTGTTCTGAACT+TGG | + | tig0022176:1778-1797 | Msa1397640:CDS | 40.0% |
| AAGGGTGAGAATGATTTACC+CGG | + | tig0022176:1812-1831 | Msa1397640:CDS | 40.0% | |
| GTTGAAAAGCTTACGGATCT+TGG | - | tig0022176:1885-1904 | None:intergenic | 40.0% | |
| TCACATCATCATCCTTAGAC+AGG | - | tig0022176:1907-1926 | None:intergenic | 40.0% | |
| ! | TGTCTAAGGATGATGATGTG+AGG | + | tig0022176:1906-1925 | Msa1397640:CDS | 40.0% |
| TGTTGTAAATGTCCTACGGT+AGG | - | tig0022176:1945-1964 | None:intergenic | 40.0% | |
| ATTCAGGGGTAACCCTAATA+TGG | + | tig0022176:2059-2078 | Msa1397640:intron | 40.0% | |
| !! | AATAGCCGGTTAAGTTGAAG+AGG | - | tig0022176:2113-2132 | None:intergenic | 40.0% |
| TTACATCGGATATTGGACTG+GGG | - | tig0022176:2224-2243 | None:intergenic | 40.0% | |
| GATTACATCGGATATTGGAC+TGG | - | tig0022176:2226-2245 | None:intergenic | 40.0% | |
| ! | TATTGGACTGGGGATTACAT+CGG | - | tig0022176:2214-2233 | None:intergenic | 40.0% |
| TCAAGAAGGATATTGGACTG+GGG | - | tig0022176:2248-2267 | None:intergenic | 40.0% | |
| TGTGTTGGAGGAATGACAAA+GGG | + | tig0022176:2485-2504 | Msa1397640:intron | 40.0% | |
| TATCTCCAAGTCCAATTCCA+TGG | - | tig0022176:2518-2537 | None:intergenic | 40.0% | |
| GAGATAGAGGCAGCAATAAA+GGG | + | tig0022176:2532-2551 | Msa1397640:intron | 40.0% | |
| AGATAGAGGCAGCAATAAAG+GGG | + | tig0022176:2533-2552 | Msa1397640:intron | 40.0% | |
| GAACCAAATGACACTACTCT+AGG | - | tig0022176:2869-2888 | None:intergenic | 40.0% | |
| !! | GTAGTGTCATTTGGTTCATG+TGG | + | tig0022176:2872-2891 | Msa1397640:intron | 40.0% |
| CAAACTTTATGATGGCACCT+TGG | - | tig0022176:2902-2921 | None:intergenic | 40.0% | |
| CATGCTTCAGTAGTTCAGTT+TGG | - | tig0022176:3004-3023 | None:intergenic | 40.0% | |
| !! | GTACTGGTTATTTGGTTGCA+GGG | + | tig0022176:3227-3246 | Msa1397640:intron | 40.0% |
| !! | CTCTTTCTTTGGAGTGTAAG+AGG | - | tig0022176:3295-3314 | None:intergenic | 40.0% |
| CAATCCTTGCTCTCTTTCTT+TGG | - | tig0022176:3306-3325 | None:intergenic | 40.0% | |
| GGCGATTCTCTTCTTCTTAT+CGG | - | tig0022176:3329-3348 | None:intergenic | 40.0% | |
| TAAGAAGAAGAGAATCGCCA+AGG | + | tig0022176:3330-3349 | Msa1397640:CDS | 40.0% | |
| ! | TCATACCTTCACCACAGTTT+TGG | + | tig0022176:3491-3510 | Msa1397640:three_prime_UTR | 40.0% |
| CTCAATTTCGAGAACAAGGT+AGG | - | tig0022176:3786-3805 | None:intergenic | 40.0% | |
| AGCAACGAGAGTTAGGGTTA+CGG | - | tig0022176:448-467 | None:intergenic | 45.0% | |
| ! | GTAATCACATGTGCTGGTGA+TGG | + | tig0022176:936-955 | Msa1397640:intron | 45.0% |
| TGCTAGACAGTGACACATGT+GGG | + | tig0022176:980-999 | Msa1397640:intron | 45.0% | |
| CTCGTCTGCAAATTCAAGTC+AGG | - | tig0022176:1147-1166 | None:intergenic | 45.0% | |
| GGACAAGAGGATTTCACAAG+AGG | + | tig0022176:1174-1193 | Msa1397640:CDS | 45.0% | |
| ! | TCCTTGTTTGTCACAACCTC+CGG | - | tig0022176:1343-1362 | None:intergenic | 45.0% |
| TGTGAAGCAACAGACGAACA+CGG | - | tig0022176:1398-1417 | None:intergenic | 45.0% | |
| ! | TGTTCGTCTGTTGCTTCACA+GGG | + | tig0022176:1398-1417 | Msa1397640:CDS | 45.0% |
| CATCCTTGGCTTCTCAACAT+CGG | - | tig0022176:1843-1862 | None:intergenic | 45.0% | |
| AGTATGTCAACACCTACCGT+AGG | + | tig0022176:1930-1949 | Msa1397640:CDS | 45.0% | |
| AAGTTGAAGAGGCCCATGTT+TGG | - | tig0022176:2102-2121 | None:intergenic | 45.0% | |
| ATGGGCCTCTTCAACTTAAC+CGG | + | tig0022176:2105-2124 | Msa1397640:intron | 45.0% | |
| CTGGGGATTACATCGGATAT+TGG | - | tig0022176:2231-2250 | None:intergenic | 45.0% | |
| ! | AAAGCGGAAACAGTGCTACT+TGG | + | tig0022176:2366-2385 | Msa1397640:intron | 45.0% |
| !! | GGAAACAGTGCTACTTGGTA+AGG | + | tig0022176:2371-2390 | Msa1397640:intron | 45.0% |
| GTGTGTTGGAGGAATGACAA+AGG | + | tig0022176:2484-2503 | Msa1397640:intron | 45.0% | |
| GTGTTGGAGGAATGACAAAG+GGG | + | tig0022176:2486-2505 | Msa1397640:intron | 45.0% | |
| AGTGACCATGGAATTGGACT+TGG | + | tig0022176:2510-2529 | Msa1397640:intron | 45.0% | |
| GGAATTGGACTTGGAGATAG+AGG | + | tig0022176:2519-2538 | Msa1397640:intron | 45.0% | |
| GGAGATAGAGGCAGCAATAA+AGG | + | tig0022176:2531-2550 | Msa1397640:intron | 45.0% | |
| AGGTTGAACTAAGAGGTCCA+TGG | + | tig0022176:2628-2647 | Msa1397640:intron | 45.0% | |
| TGAACTAAGAGGTCCATGGT+TGG | + | tig0022176:2632-2651 | Msa1397640:intron | 45.0% | |
| TTGGTTCATGTGGCTTACCA+AGG | + | tig0022176:2882-2901 | Msa1397640:intron | 45.0% | |
| ! | ATGTTGACTGAGCAGCATAC+AGG | - | tig0022176:3045-3064 | None:intergenic | 45.0% |
| !! | GGTACTGGTTATTTGGTTGC+AGG | + | tig0022176:3226-3245 | Msa1397640:intron | 45.0% |
| CACTCCAAAGAAAGAGAGCA+AGG | + | tig0022176:3299-3318 | Msa1397640:CDS | 45.0% | |
| AATCGCCAAGGCAAAATCAG+AGG | + | tig0022176:3342-3361 | Msa1397640:CDS | 45.0% | |
| ATCCAGGATTTCCAGTGCTA+AGG | + | tig0022176:3444-3463 | Msa1397640:CDS | 45.0% | |
| ! | TGAAGGTATGACAGCAACCT+AGG | - | tig0022176:3482-3501 | None:intergenic | 45.0% |
| CAAGACCAAAACTGTGGTGA+AGG | - | tig0022176:3499-3518 | None:intergenic | 45.0% | |
| AAATGGTGCGAGTATAGGTG+TGG | + | tig0022176:3818-3837 | Msa1397640:three_prime_UTR | 45.0% | |
| !! | ACAAAATATTAAAATTATTT+AGG | - | tig0022176:706-725 | None:intergenic | 5.0% |
| GAATGCTGAAGACATGCGCA+CGG | - | tig0022176:356-375 | None:intergenic | 50.0% | |
| AACGAGAGTTAGGGTTACGG+TGG | - | tig0022176:445-464 | None:intergenic | 50.0% | |
| AATGTTGCGAATCCCACCAC+TGG | + | tig0022176:563-582 | Msa1397640:CDS | 50.0% | |
| TTCTTCTGGCATCCAGTGGT+GGG | - | tig0022176:578-597 | None:intergenic | 50.0% | |
| AAGCTTCTTCTGGCATCCAG+TGG | - | tig0022176:582-601 | None:intergenic | 50.0% | |
| !! | TCACATGTGCTGGTGATGGA+CGG | + | tig0022176:940-959 | Msa1397640:intron | 50.0% |
| GTGCTAGACAGTGACACATG+TGG | + | tig0022176:979-998 | Msa1397640:intron | 50.0% | |
| !!! | GACGAGCATTTTGGGACAAG+AGG | + | tig0022176:1161-1180 | Msa1397640:intron | 50.0% |
| ACCGGAGGTTGTGACAAACA+AGG | + | tig0022176:1339-1358 | Msa1397640:CDS | 50.0% | |
| ! | GTGTTCGTCTGTTGCTTCAC+AGG | + | tig0022176:1397-1416 | Msa1397640:CDS | 50.0% |
| ! | GTTCGTCTGTTGCTTCACAG+GGG | + | tig0022176:1399-1418 | Msa1397640:CDS | 50.0% |
| ACACTGACAGGCTACGCAAA+AGG | - | tig0022176:1429-1448 | None:intergenic | 50.0% | |
| ACAGGAACTCCTTGCTTTCG+TGG | + | tig0022176:1695-1714 | Msa1397640:intron | 50.0% | |
| CAGGAACTCCTTGCTTTCGT+GGG | + | tig0022176:1696-1715 | Msa1397640:intron | 50.0% | |
| TTGGCTTCTCAACATCGGTC+AGG | - | tig0022176:1838-1857 | None:intergenic | 50.0% | |
| TGACCGATGTTGAGAAGCCA+AGG | + | tig0022176:1837-1856 | Msa1397640:CDS | 50.0% | |
| GTTGAGAAGCCAAGGATGAG+AGG | + | tig0022176:1845-1864 | Msa1397640:CDS | 50.0% | |
| CTCTTAGGACCTCTCATCCT+TGG | - | tig0022176:1857-1876 | None:intergenic | 50.0% | |
| CGGATCTTGGACACTCTCTT+AGG | - | tig0022176:1872-1891 | None:intergenic | 50.0% | |
| TGACAAAGGGGTAGTGACCA+TGG | + | tig0022176:2498-2517 | Msa1397640:intron | 50.0% | |
| AGGGGTAGTGACCATGGAAT+TGG | + | tig0022176:2504-2523 | Msa1397640:intron | 50.0% | |
| GTTACATTACCTGGTGCAGC+AGG | + | tig0022176:2608-2627 | Msa1397640:intron | 50.0% | |
| TTAGTTCAACCTGCTGCACC+AGG | - | tig0022176:2620-2639 | None:intergenic | 50.0% | |
| ! | GTGCAGCAGGTTGAACTAAG+AGG | + | tig0022176:2621-2640 | Msa1397640:intron | 50.0% |
| ! | AGCTGCCTCTGATTTTGCCT+TGG | - | tig0022176:3350-3369 | None:intergenic | 50.0% |
| ACCAGAAGCTTCTTGCTTCC+AGG | + | tig0022176:3374-3393 | Msa1397640:CDS | 50.0% | |
| ACCTGGAAGCAAGAAGCTTC+TGG | - | tig0022176:3378-3397 | None:intergenic | 50.0% | |
| ! | GCTTCTTGCTTCCAGGTTGA+AGG | + | tig0022176:3381-3400 | Msa1397640:CDS | 50.0% |
| ! | TGCCTTAGCACTGGAAATCC+TGG | - | tig0022176:3449-3468 | None:intergenic | 50.0% |
| AGGTATGACAGCAACCTAGG+CGG | - | tig0022176:3479-3498 | None:intergenic | 50.0% | |
| GAAGACATGCGCACGGTAAG+AGG | - | tig0022176:349-368 | None:intergenic | 55.0% | |
| TTCTACAACAACCGCCGCGT+CGG | - | tig0022176:399-418 | None:intergenic | 55.0% | |
| CTTCTTCTGGCATCCAGTGG+TGG | - | tig0022176:579-598 | None:intergenic | 55.0% | |
| GAGGTCAATGGGGATGCTCT+TGG | + | tig0022176:1193-1212 | Msa1397640:CDS | 55.0% | |
| CAATGGGGATGCTCTTGGTG+AGG | + | tig0022176:1198-1217 | Msa1397640:CDS | 55.0% | |
| GTCAGGACTCCCTGCTTCAT+TGG | - | tig0022176:1369-1388 | None:intergenic | 55.0% | |
| ACTCCTTGCTTTCGTGGGCA+TGG | + | tig0022176:1701-1720 | Msa1397640:CDS | 55.0% | |
| CTTCCATGCCCACGAAAGCA+AGG | - | tig0022176:1707-1726 | None:intergenic | 55.0% | |
| CTTGCTTTCGTGGGCATGGA+AGG | + | tig0022176:1705-1724 | Msa1397640:CDS | 55.0% | |
| GCTGACAATGCACCCACGAA+CGG | - | tig0022176:1756-1775 | None:intergenic | 55.0% | |
| TTCTCAACATCGGTCAGGCC+GGG | - | tig0022176:1833-1852 | None:intergenic | 55.0% | |
| CTTCTCAACATCGGTCAGGC+CGG | - | tig0022176:1834-1853 | None:intergenic | 55.0% | |
| CTCTCTCTGCTCCTTCAACC+TGG | - | tig0022176:3395-3414 | None:intergenic | 55.0% | |
| CAACAGACGAACACGGCCAG+GGG | - | tig0022176:1391-1410 | None:intergenic | 60.0% | |
| GCAACAGACGAACACGGCCA+GGG | - | tig0022176:1392-1411 | None:intergenic | 60.0% | |
| AGCAACAGACGAACACGGCC+AGG | - | tig0022176:1393-1412 | None:intergenic | 60.0% | |
| ! | CGTGGGCATGGAAGGCGTAA+TGG | + | tig0022176:1713-1732 | Msa1397640:CDS | 60.0% |
| ! | GAAGGCGTAATGGAGAGCGC+AGG | + | tig0022176:1723-1742 | Msa1397640:CDS | 60.0% |
| GCAGGAGGAAGTCCGTTCGT+GGG | + | tig0022176:1741-1760 | Msa1397640:CDS | 60.0% | |
| GGTGACAGCTGCCTTAGCAC+TGG | - | tig0022176:3458-3477 | None:intergenic | 60.0% | |
| TAAGGCAGCTGTCACCGCCT+AGG | + | tig0022176:3462-3481 | Msa1397640:CDS | 60.0% | |
| CTCTCCGAGACACTCCGACG+CGG | + | tig0022176:382-401 | Msa1397640:five_prime_UTR | 65.0% | |
| AAGCAGGGAGTCCTGACCCC+TGG | + | tig0022176:1372-1391 | Msa1397640:CDS | 65.0% | |
| ! | GGCGTAATGGAGAGCGCAGG+AGG | + | tig0022176:1726-1745 | Msa1397640:CDS | 65.0% |
| CGCAGGAGGAAGTCCGTTCG+TGG | + | tig0022176:1740-1759 | Msa1397640:CDS | 65.0% | |
| TCCGAGACACTCCGACGCGG+CGG | + | tig0022176:385-404 | Msa1397640:five_prime_UTR | 70.0% | |
| ! | ACCGCCGCGTCGGAGTGTCT+CGG | - | tig0022176:389-408 | None:intergenic | 70.0% |
| GACGAACACGGCCAGGGGTC+AGG | - | tig0022176:1386-1405 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022176 | gene | 290 | 3907 | 290 | ID=Msa1397640;Name=Msa1397640 |
| tig0022176 | mRNA | 290 | 3907 | 290 | ID=Msa1397640-mRNA-1;Parent=Msa1397640;Name=Msa1397640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=138|1|1|1|1|1|6|424|248 |
| tig0022176 | exon | 290 | 433 | 290 | ID=Msa1397640-mRNA-1:exon:16221;Parent=Msa1397640-mRNA-1 |
| tig0022176 | exon | 560 | 624 | 560 | ID=Msa1397640-mRNA-1:exon:16222;Parent=Msa1397640-mRNA-1 |
| tig0022176 | exon | 1162 | 1219 | 1162 | ID=Msa1397640-mRNA-1:exon:16223;Parent=Msa1397640-mRNA-1 |
| tig0022176 | exon | 1312 | 1420 | 1312 | ID=Msa1397640-mRNA-1:exon:16224;Parent=Msa1397640-mRNA-1 |
| tig0022176 | exon | 1699 | 1971 | 1699 | ID=Msa1397640-mRNA-1:exon:16225;Parent=Msa1397640-mRNA-1 |
| tig0022176 | exon | 3248 | 3907 | 3248 | ID=Msa1397640-mRNA-1:exon:16226;Parent=Msa1397640-mRNA-1 |
| tig0022176 | five_prime_UTR | 290 | 427 | 290 | ID=Msa1397640-mRNA-1:five_prime_utr;Parent=Msa1397640-mRNA-1 |
| tig0022176 | CDS | 428 | 433 | 428 | ID=Msa1397640-mRNA-1:cds;Parent=Msa1397640-mRNA-1 |
| tig0022176 | CDS | 560 | 624 | 560 | ID=Msa1397640-mRNA-1:cds;Parent=Msa1397640-mRNA-1 |
| tig0022176 | CDS | 1162 | 1219 | 1162 | ID=Msa1397640-mRNA-1:cds;Parent=Msa1397640-mRNA-1 |
| tig0022176 | CDS | 1312 | 1420 | 1312 | ID=Msa1397640-mRNA-1:cds;Parent=Msa1397640-mRNA-1 |
| tig0022176 | CDS | 1699 | 1971 | 1699 | ID=Msa1397640-mRNA-1:cds;Parent=Msa1397640-mRNA-1 |
| tig0022176 | CDS | 3248 | 3483 | 3248 | ID=Msa1397640-mRNA-1:cds;Parent=Msa1397640-mRNA-1 |
| tig0022176 | three_prime_UTR | 3484 | 3907 | 3484 | ID=Msa1397640-mRNA-1:three_prime_utr;Parent=Msa1397640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
