Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400620 | XP_013457745.3 | 89.815 | 108 | 11 | 0 | 1 | 108 | 30 | 137 | 1.11e-52 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400620 | sp|Q9SB64|NBR1_ARATH | 47.619 | 84 | 44 | 0 | 1 | 84 | 9 | 92 | 2.89e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400620 | A0A072UQZ7 | 89.815 | 108 | 11 | 0 | 1 | 108 | 30 | 137 | 5.32e-53 | 173 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0280490 | Msa1400620 | 0.800129 | 1.665902e-48 | -8.615850e-47 |
| Msa0591060 | Msa1400620 | 0.800529 | 1.380821e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400620 | MtrunA17_Chr4g0058471 | 55.752 | 113 | 44 | 2 | 1 | 108 | 6 | 117 | 2.17e-34 | 116 |
| Msa1400620 | MtrunA17_Chr4g0058511 | 66.964 | 112 | 31 | 2 | 2 | 108 | 38 | 148 | 3.07e-34 | 117 |
| Msa1400620 | MtrunA17_Chr4g0058521 | 63.551 | 107 | 30 | 3 | 3 | 108 | 15 | 113 | 6.58e-29 | 102 |
| Msa1400620 | MtrunA17_Chr4g0058461 | 68.675 | 83 | 26 | 0 | 3 | 85 | 8 | 90 | 1.40e-22 | 90.9 |
| Msa1400620 | MtrunA17_Chr4g0058491 | 54.545 | 88 | 34 | 2 | 27 | 108 | 1 | 88 | 8.48e-22 | 83.2 |
| Msa1400620 | MtrunA17_Chr4g0058501 | 54.386 | 57 | 20 | 2 | 57 | 108 | 1 | 56 | 4.33e-11 | 54.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400620 | AT4G24690.1 | 47.619 | 84 | 44 | 0 | 1 | 84 | 9 | 92 | 2.94e-20 | 84.7 |
Find 16 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGAATTGAAGTACAATA+TGG | 0.400819 | tig0022468:-33796 | Msa1400620:CDS |
| TCTTAACATGGTTGAGTTGA+GGG | 0.421418 | tig0022468:-33953 | Msa1400620:CDS |
| AATCTGTGTGGAAAATATTA+CGG | 0.435313 | tig0022468:-33738 | Msa1400620:CDS |
| ACGAACATTGAAGCGCTTGA+AGG | 0.493686 | tig0022468:+33999 | None:intergenic |
| TGTGGATGAGAATAATCAAA+TGG | 0.500589 | tig0022468:-33977 | Msa1400620:CDS |
| TGTTGATGAAGAGGGTGACT+TGG | 0.514717 | tig0022468:-33875 | Msa1400620:CDS |
| ATCTTAACATGGTTGAGTTG+AGG | 0.541915 | tig0022468:-33954 | Msa1400620:CDS |
| TTGAGTTGAGGGCTAAGATA+AGG | 0.584743 | tig0022468:-33942 | Msa1400620:CDS |
| TGTGTGGAAAATATTACGGA+AGG | 0.616681 | tig0022468:-33734 | Msa1400620:CDS |
| TAATCAAATGGATCTTAACA+TGG | 0.622269 | tig0022468:-33965 | Msa1400620:CDS |
| ATGATTTGCACGACGTGATG+AGG | 0.626481 | tig0022468:-33834 | Msa1400620:CDS |
| CAAGCGCTTCAATGTTCGTG+TGG | 0.628729 | tig0022468:-33995 | Msa1400620:CDS |
| CTGAGATATGTTGATGAAGA+GGG | 0.631119 | tig0022468:-33883 | Msa1400620:CDS |
| ATTGAAGTACAATATGGCAA+CGG | 0.647428 | tig0022468:-33790 | Msa1400620:CDS |
| TCTGAGATATGTTGATGAAG+AGG | 0.660807 | tig0022468:-33884 | Msa1400620:CDS |
| AAATGATCGGTAAATCTGTG+TGG | 0.665580 | tig0022468:-33750 | Msa1400620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATTACTATGTTTTTT+TGG | - | tig0022468:37024-37043 | Msa1400620:intron | 10.0% |
| !! | TGATATTATATTTAATGATC+CGG | - | tig0022468:34777-34796 | Msa1400620:intron | 15.0% |
| !! | GTTATTATAAAACCAAAATT+AGG | + | tig0022468:35276-35295 | None:intergenic | 15.0% |
| !! | TATTTCAAAATCCAAATATT+TGG | - | tig0022468:36769-36788 | Msa1400620:intron | 15.0% |
| !! | AAAATTATGTACCAAATATT+TGG | + | tig0022468:36783-36802 | None:intergenic | 15.0% |
| !! | AAATTTGATGAAATGACAAT+AGG | + | tig0022468:34046-34065 | None:intergenic | 20.0% |
| !! | AACTACATATATTTCAACAA+AGG | + | tig0022468:34100-34119 | None:intergenic | 20.0% |
| !! | AATGAAAATGAATCGAAAAA+GGG | + | tig0022468:34369-34388 | None:intergenic | 20.0% |
| !!! | TTGGAATATTGTTTTGATTT+TGG | - | tig0022468:35062-35081 | Msa1400620:intron | 20.0% |
| !! | GAAAGAAAAAGAATGTTAAA+GGG | + | tig0022468:35939-35958 | None:intergenic | 20.0% |
| !! | AGAAAGAAAAAGAATGTTAA+AGG | + | tig0022468:35940-35959 | None:intergenic | 20.0% |
| !! | TTCTTTCTTTCTTATATCTT+TGG | - | tig0022468:35952-35971 | Msa1400620:intron | 20.0% |
| !!! | GTTTTCTTTTTATCAGTTTT+CGG | - | tig0022468:36094-36113 | Msa1400620:intron | 20.0% |
| !!! | ATCTTATTTCAGTTAAAGTA+AGG | + | tig0022468:36739-36758 | None:intergenic | 20.0% |
| !!! | TATTTGGATTTTGAAATAGT+AGG | + | tig0022468:36767-36786 | None:intergenic | 20.0% |
| !!! | GCATTTTTCAAATTCAATTT+TGG | - | tig0022468:36893-36912 | Msa1400620:intron | 20.0% |
| !! | TTTCAATTGAGAAAAATGAT+CGG | - | tig0022468:37328-37347 | Msa1400620:intron | 20.0% |
| ! | ATGAAGGAAGAAATGAAAAT+CGG | + | tig0022468:33826-33845 | None:intergenic | 25.0% |
| ! | AATTGCATTGCATGTTAATT+AGG | - | tig0022468:33956-33975 | Msa1400620:CDS | 25.0% |
| !!! | ACTCATTTTAGAGTTAGTTA+AGG | - | tig0022468:34122-34141 | Msa1400620:intron | 25.0% |
| !!! | CTCATTTTAGAGTTAGTTAA+GGG | - | tig0022468:34123-34142 | Msa1400620:intron | 25.0% |
| ! | CAATGAAAATGAATCGAAAA+AGG | + | tig0022468:34370-34389 | None:intergenic | 25.0% |
| ! | AAACAGAATCAAGAAAGAAA+GGG | + | tig0022468:34431-34450 | None:intergenic | 25.0% |
| ! | AAAACAGAATCAAGAAAGAA+AGG | + | tig0022468:34432-34451 | None:intergenic | 25.0% |
| ! | CAAAGGAACTAGATAAAATT+GGG | + | tig0022468:34490-34509 | None:intergenic | 25.0% |
| !! | TGTCAATTTTCCCAATTTTT+AGG | - | tig0022468:34551-34570 | Msa1400620:intron | 25.0% |
| !! | GTCAATTTTCCCAATTTTTA+GGG | - | tig0022468:34552-34571 | Msa1400620:intron | 25.0% |
| ! | AAACTGAAACCCTAAAAATT+GGG | + | tig0022468:34564-34583 | None:intergenic | 25.0% |
| !!! | TGATTTTGGAAGATTATACA+TGG | - | tig0022468:35076-35095 | Msa1400620:intron | 25.0% |
| !! | TTGTTCAGTTCATTTCTTTT+TGG | - | tig0022468:35197-35216 | Msa1400620:intron | 25.0% |
| ! | ATAATAACCTTGAGTTACAT+TGG | - | tig0022468:35288-35307 | Msa1400620:intron | 25.0% |
| ! | TAATAACCTTGAGTTACATT+GGG | - | tig0022468:35289-35308 | Msa1400620:intron | 25.0% |
| !!! | TTTTGGAATTGATGAGTATT+TGG | - | tig0022468:35426-35445 | Msa1400620:intron | 25.0% |
| ! | ACACAACAAAAAATACCAAA+AGG | + | tig0022468:35574-35593 | None:intergenic | 25.0% |
| ! | AATACTAAAGTTGTGCTAAA+AGG | + | tig0022468:35891-35910 | None:intergenic | 25.0% |
| ! | AACAAAGGTTAACATCAATA+AGG | + | tig0022468:36017-36036 | None:intergenic | 25.0% |
| ! | CAGTAATAAAGCTTCAAAAA+AGG | + | tig0022468:36295-36314 | None:intergenic | 25.0% |
| !!! | CTTTTTTGAAGCTTTATTAC+TGG | - | tig0022468:36293-36312 | Msa1400620:intron | 25.0% |
| !!! | ATCTTGTTTTTGTTAGTAGT+TGG | - | tig0022468:36368-36387 | Msa1400620:intron | 25.0% |
| !!! | ACTCATTTTAGAGTTAGTTA+AGG | - | tig0022468:34122-34141 | Msa1400620:intron | 25.0% |
| !!! | CTCATTTTAGAGTTAGTTAA+GGG | - | tig0022468:34123-34142 | Msa1400620:intron | 25.0% |
| !!! | ATTTTTGGGGTCAAAATTTT+GGG | + | tig0022468:36834-36853 | None:intergenic | 25.0% |
| ! | TAATCAAATGGATCTTAACA+TGG | - | tig0022468:37126-37145 | Msa1400620:intron | 25.0% |
| ! | TTGAGAATTGAAGTACAATA+TGG | - | tig0022468:37295-37314 | Msa1400620:intron | 25.0% |
| ! | AATCTGTGTGGAAAATATTA+CGG | - | tig0022468:37353-37372 | Msa1400620:intron | 25.0% |
| ACATATATACTGCATAGATG+GGG | + | tig0022468:33739-33758 | None:intergenic | 30.0% | |
| GACATATATACTGCATAGAT+GGG | + | tig0022468:33740-33759 | None:intergenic | 30.0% | |
| TGACATATATACTGCATAGA+TGG | + | tig0022468:33741-33760 | None:intergenic | 30.0% | |
| GAAAGTTGAGATAAGGATAA+AGG | + | tig0022468:33895-33914 | None:intergenic | 30.0% | |
| GAAATGAGAAAGTTGAGATA+AGG | + | tig0022468:33902-33921 | None:intergenic | 30.0% | |
| GGGAAAACAAATCATTCATA+TGG | + | tig0022468:33985-34004 | None:intergenic | 30.0% | |
| TTTCATGAAACCAACATTTC+AGG | + | tig0022468:34010-34029 | None:intergenic | 30.0% | |
| TGGTTTCATGAAAGTGAATT+TGG | - | tig0022468:34017-34036 | Msa1400620:CDS | 30.0% | |
| AAATGAATCGAAAAAGGGAA+TGG | + | tig0022468:34364-34383 | None:intergenic | 30.0% | |
| ! | AAGAAATTTTCTCGAGAAAG+TGG | + | tig0022468:34403-34422 | None:intergenic | 30.0% |
| GCAAAGGAACTAGATAAAAT+TGG | + | tig0022468:34491-34510 | None:intergenic | 30.0% | |
| AAACAAGAAAGATAAGGCAA+AGG | + | tig0022468:34507-34526 | None:intergenic | 30.0% | |
| ATCGCAAAACAAGAAAGATA+AGG | + | tig0022468:34513-34532 | None:intergenic | 30.0% | |
| GAAACTGAAACCCTAAAAAT+TGG | + | tig0022468:34565-34584 | None:intergenic | 30.0% | |
| CAGATCTTGAGAATACAAAA+GGG | + | tig0022468:34838-34857 | None:intergenic | 30.0% | |
| ACAGATCTTGAGAATACAAA+AGG | + | tig0022468:34839-34858 | None:intergenic | 30.0% | |
| GCTGTAATTTCTGATATAGT+TGG | - | tig0022468:34930-34949 | Msa1400620:intron | 30.0% | |
| AACTCCAAGAATAAACCAAT+TGG | + | tig0022468:35043-35062 | None:intergenic | 30.0% | |
| ! | ATTGGTTTATTCTTGGAGTT+TGG | - | tig0022468:35043-35062 | Msa1400620:intron | 30.0% |
| TTGGAAGATTATACATGGAA+TGG | - | tig0022468:35081-35100 | Msa1400620:intron | 30.0% | |
| !! | CAGTTCATTTCTTTTTGGAA+TGG | - | tig0022468:35202-35221 | Msa1400620:intron | 30.0% |
| !!! | TTCTTTTTGGAATGGTTCTT+TGG | - | tig0022468:35210-35229 | Msa1400620:intron | 30.0% |
| ! | GATTTTTGTCTCATTTAGCT+TGG | - | tig0022468:35232-35251 | Msa1400620:intron | 30.0% |
| TCACATGAAGGATATGTTTA+TGG | - | tig0022468:35339-35358 | Msa1400620:intron | 30.0% | |
| TGTTCATAGTTCCTTACATA+AGG | - | tig0022468:35363-35382 | Msa1400620:intron | 30.0% | |
| AGGTATAAACACCTTATGTA+AGG | + | tig0022468:35377-35396 | None:intergenic | 30.0% | |
| TGTTTATACCTTATCCACTT+TGG | - | tig0022468:35386-35405 | Msa1400620:intron | 30.0% | |
| ! | TTTAGAATCCAAAGTGGATA+AGG | + | tig0022468:35397-35416 | None:intergenic | 30.0% |
| TTATCCACTTTGGATTCTAA+AGG | - | tig0022468:35396-35415 | Msa1400620:intron | 30.0% | |
| !! | ATTCTAAAGGTTCTTGGTTT+TGG | - | tig0022468:35409-35428 | Msa1400620:intron | 30.0% |
| CACTAATTCTTCAAAGAAGT+AGG | + | tig0022468:35475-35494 | None:intergenic | 30.0% | |
| !! | TTGGTAATTCTCAAGTTGAA+AGG | - | tig0022468:35519-35538 | Msa1400620:intron | 30.0% |
| !! | TGGTAATTCTCAAGTTGAAA+GGG | - | tig0022468:35520-35539 | Msa1400620:intron | 30.0% |
| !!! | AAGCATTGATTTGTTCCTTT+TGG | - | tig0022468:35556-35575 | Msa1400620:intron | 30.0% |
| !!! | TGTTGTGTTGAAGTTTTAGA+AGG | - | tig0022468:35586-35605 | Msa1400620:intron | 30.0% |
| ATAAACCAGCTAGAGAATAA+AGG | + | tig0022468:35750-35769 | None:intergenic | 30.0% | |
| TGATGTTAACCTTTGTTAAG+TGG | - | tig0022468:36020-36039 | Msa1400620:intron | 30.0% | |
| !! | ATTGTTTGGATATGGTTTTG+TGG | - | tig0022468:36130-36149 | Msa1400620:intron | 30.0% |
| TTCTTACTCATATACTGTGT+TGG | - | tig0022468:36158-36177 | Msa1400620:intron | 30.0% | |
| ATTGAAGAGCAAATTCTGTT+TGG | - | tig0022468:36414-36433 | Msa1400620:intron | 30.0% | |
| ! | TATGGTTTGAAGCTTTGTAT+TGG | - | tig0022468:36448-36467 | Msa1400620:intron | 30.0% |
| ! | TGGTCATTTCTTTTTCTGTT+TGG | - | tig0022468:36468-36487 | Msa1400620:intron | 30.0% |
| ! | TTCACATATCGTTGCAATTT+TGG | - | tig0022468:36801-36820 | Msa1400620:intron | 30.0% |
| !!! | CATTTTTGGGGTCAAAATTT+TGG | + | tig0022468:36835-36854 | None:intergenic | 30.0% |
| !! | AAATTTTGACCCCAAAAATG+TGG | - | tig0022468:36835-36854 | Msa1400620:intron | 30.0% |
| ! | GACAAAAATCCACATTTTTG+GGG | + | tig0022468:36847-36866 | None:intergenic | 30.0% |
| ! | GGACAAAAATCCACATTTTT+GGG | + | tig0022468:36848-36867 | None:intergenic | 30.0% |
| ! | AAAGTATCTTACCACTTGTT+GGG | + | tig0022468:36869-36888 | None:intergenic | 30.0% |
| !! | AAAAGTATCTTACCACTTGT+TGG | + | tig0022468:36870-36889 | None:intergenic | 30.0% |
| TAAAATAGAGAGACCAAAAG+TGG | - | tig0022468:36959-36978 | Msa1400620:intron | 30.0% | |
| AAAATAGAGAGACCAAAAGT+GGG | - | tig0022468:36960-36979 | Msa1400620:intron | 30.0% | |
| TGTGGATGAGAATAATCAAA+TGG | - | tig0022468:37114-37133 | Msa1400620:intron | 30.0% | |
| ATTGAAGTACAATATGGCAA+CGG | - | tig0022468:37301-37320 | Msa1400620:intron | 30.0% | |
| TGAAAATCGGTGAAACACTA+AGG | + | tig0022468:33813-33832 | None:intergenic | 35.0% | |
| !! | GAATCTCATCTGGTTGATAA+AGG | - | tig0022468:33868-33887 | Msa1400620:CDS | 35.0% |
| ATGAAACCAACATTTCAGGA+GGG | + | tig0022468:34006-34025 | None:intergenic | 35.0% | |
| !! | GCTTTTTCTCTCAATGTTCA+TGG | - | tig0022468:34244-34263 | Msa1400620:intron | 35.0% |
| TGATACCATGTTGAGAAACA+TGG | + | tig0022468:34273-34292 | None:intergenic | 35.0% | |
| ATGCAGCAGAATAATGTTCA+TGG | + | tig0022468:34311-34330 | None:intergenic | 35.0% | |
| GAAATCGATTAAGAACAGAG+AGG | + | tig0022468:34630-34649 | None:intergenic | 35.0% | |
| AATCAAGAGAATTACGAAGC+CGG | + | tig0022468:34799-34818 | None:intergenic | 35.0% | |
| GTATTCTCAAGATCTGTTTG+TGG | - | tig0022468:34842-34861 | Msa1400620:intron | 35.0% | |
| TGAAATCTCTCTATCTGGTA+TGG | - | tig0022468:34994-35013 | Msa1400620:intron | 35.0% | |
| ! | TGCTCCAATTGGTTTATTCT+TGG | - | tig0022468:35036-35055 | Msa1400620:intron | 35.0% |
| ATTGCACTGTTATTCTCATC+TGG | - | tig0022468:35122-35141 | Msa1400620:intron | 35.0% | |
| ACTGTTATTCTCATCTGGTT+TGG | - | tig0022468:35127-35146 | Msa1400620:intron | 35.0% | |
| !!! | TTTTGTCTCATTTAGCTTGG+AGG | - | tig0022468:35235-35254 | Msa1400620:intron | 35.0% |
| !! | TTTCTCAGCTAGCCTAATTT+TGG | - | tig0022468:35261-35280 | Msa1400620:intron | 35.0% |
| TAGAAACCCAATGTAACTCA+AGG | + | tig0022468:35298-35317 | None:intergenic | 35.0% | |
| TGCGAAATTGTTTCACATGA+AGG | - | tig0022468:35327-35346 | Msa1400620:intron | 35.0% | |
| !! | AGAACCTTTAGAATCCAAAG+TGG | + | tig0022468:35403-35422 | None:intergenic | 35.0% |
| ! | CTTTGGATTCTAAAGGTTCT+TGG | - | tig0022468:35403-35422 | Msa1400620:intron | 35.0% |
| TGAGTATTTGGAAGTTGTGA+AGG | - | tig0022468:35438-35457 | Msa1400620:intron | 35.0% | |
| TTCTTCAAAGAAGTAGGAGA+TGG | + | tig0022468:35469-35488 | None:intergenic | 35.0% | |
| CAGTTGCACATATTTGTCTT+TGG | - | tig0022468:35495-35514 | Msa1400620:intron | 35.0% | |
| GCACATATTTGTCTTTGGTT+TGG | - | tig0022468:35500-35519 | Msa1400620:intron | 35.0% | |
| TTGCTTGAAGACACAGAAAT+TGG | - | tig0022468:35625-35644 | Msa1400620:intron | 35.0% | |
| !! | ACTCTTTGGCTTGTTATTGT+TGG | - | tig0022468:35687-35706 | Msa1400620:intron | 35.0% |
| CAATACTCAGATTGTGCTAA+AGG | + | tig0022468:35787-35806 | None:intergenic | 35.0% | |
| AGAATGTTAAAGGGTCTTGA+TGG | + | tig0022468:35930-35949 | None:intergenic | 35.0% | |
| ! | ATATCTTTGGCTTCTACCTA+TGG | - | tig0022468:35965-35984 | Msa1400620:intron | 35.0% |
| GCAAAATGCTTAACTACCAT+AGG | + | tig0022468:35984-36003 | None:intergenic | 35.0% | |
| ! | TTAAGCATTTTGCCCTTTGT+TGG | - | tig0022468:35991-36010 | Msa1400620:intron | 35.0% |
| ACATCAATAAGGCCAACAAA+GGG | + | tig0022468:36006-36025 | None:intergenic | 35.0% | |
| AACATCAATAAGGCCAACAA+AGG | + | tig0022468:36007-36026 | None:intergenic | 35.0% | |
| AAGGCTTAACCACTTAACAA+AGG | + | tig0022468:36032-36051 | None:intergenic | 35.0% | |
| TGGTTAAGCATTTCTCTCTA+TGG | - | tig0022468:36072-36091 | Msa1400620:intron | 35.0% | |
| GTTTGGACATTGTTTGGATA+TGG | - | tig0022468:36122-36141 | Msa1400620:intron | 35.0% | |
| ACTGTGTTGGAAGAGTTATA+TGG | - | tig0022468:36171-36190 | Msa1400620:intron | 35.0% | |
| TTGGAAGAGTTATATGGACA+TGG | - | tig0022468:36177-36196 | Msa1400620:intron | 35.0% | |
| ! | TTAGCCTTTGTAGTTTGTGA+TGG | - | tig0022468:36214-36233 | Msa1400620:intron | 35.0% |
| TGTTTGGAAGCTTTCTCTTA+TGG | - | tig0022468:36430-36449 | Msa1400620:intron | 35.0% | |
| TTCTCTTACCTTGAGTTTGA+GGG | - | tig0022468:36524-36543 | Msa1400620:intron | 35.0% | |
| !! | GCTTTTTCTCTCAATGTTCA+TGG | - | tig0022468:34244-34263 | Msa1400620:intron | 35.0% |
| ! | GGGACAAAAATCCACATTTT+TGG | + | tig0022468:36849-36868 | None:intergenic | 35.0% |
| !!! | AATTCAATTTTGGAGCAACC+TGG | - | tig0022468:36903-36922 | Msa1400620:intron | 35.0% |
| !!! | AGCAACCTGGATTTTGAAAT+TGG | - | tig0022468:36916-36935 | Msa1400620:intron | 35.0% |
| !!! | GCAACCTGGATTTTGAAATT+GGG | - | tig0022468:36917-36936 | Msa1400620:intron | 35.0% |
| !!! | CAACCTGGATTTTGAAATTG+GGG | - | tig0022468:36918-36937 | Msa1400620:intron | 35.0% |
| ! | TGGGGCTAAAATCTTGTTTA+AGG | - | tig0022468:36936-36955 | Msa1400620:intron | 35.0% |
| !! | TAACTAGCTTAACCCACTTT+TGG | + | tig0022468:36975-36994 | None:intergenic | 35.0% |
| ATCATTTGTGAACTCTGTAC+AGG | - | tig0022468:37054-37073 | Msa1400620:intron | 35.0% | |
| ! | ATCTTAACATGGTTGAGTTG+AGG | - | tig0022468:37137-37156 | Msa1400620:intron | 35.0% |
| !! | TCTTAACATGGTTGAGTTGA+GGG | - | tig0022468:37138-37157 | Msa1400620:intron | 35.0% |
| ! | TCTGAGATATGTTGATGAAG+AGG | - | tig0022468:37207-37226 | Msa1400620:intron | 35.0% |
| ! | CTGAGATATGTTGATGAAGA+GGG | - | tig0022468:37208-37227 | Msa1400620:intron | 35.0% |
| AAATGATCGGTAAATCTGTG+TGG | - | tig0022468:37341-37360 | Msa1400620:intron | 35.0% | |
| TGTGTGGAAAATATTACGGA+AGG | - | tig0022468:37357-37376 | Msa1400620:intron | 35.0% | |
| TGAAACACTAAGGCAACTGT+TGG | + | tig0022468:33803-33822 | None:intergenic | 40.0% | |
| TGAAAGAACGAAAGCGATGA+AGG | + | tig0022468:33842-33861 | None:intergenic | 40.0% | |
| TGAAACCAACATTTCAGGAG+GGG | + | tig0022468:34005-34024 | None:intergenic | 40.0% | |
| CATGAAACCAACATTTCAGG+AGG | + | tig0022468:34007-34026 | None:intergenic | 40.0% | |
| TCAACATGGTATCAGAGCAA+TGG | - | tig0022468:34279-34298 | Msa1400620:intron | 40.0% | |
| CAGCAGAATAATGTTCATGG+AGG | + | tig0022468:34308-34327 | None:intergenic | 40.0% | |
| CAGAATCAAGAAAGAAAGGG+TGG | + | tig0022468:34428-34447 | None:intergenic | 40.0% | |
| CAGAGAAAGTGAGGTATGAA+GGG | + | tig0022468:34739-34758 | None:intergenic | 40.0% | |
| TCAGAGAAAGTGAGGTATGA+AGG | + | tig0022468:34740-34759 | None:intergenic | 40.0% | |
| TCAACAACTCAGAGAAAGTG+AGG | + | tig0022468:34748-34767 | None:intergenic | 40.0% | |
| TCCCAGTGTTCAATGTGTTT+CGG | - | tig0022468:34872-34891 | Msa1400620:intron | 40.0% | |
| ACCGAAACACATTGAACACT+GGG | + | tig0022468:34876-34895 | None:intergenic | 40.0% | |
| ! | TGATATAGTTGGTACCACTG+AGG | - | tig0022468:34941-34960 | Msa1400620:intron | 40.0% |
| ACAGCAACAAAATTCCTCAG+TGG | + | tig0022468:34958-34977 | None:intergenic | 40.0% | |
| AGATAGAGAGATTTCAGCAG+AGG | + | tig0022468:34990-35009 | None:intergenic | 40.0% | |
| TCTGCTGAAATCTCTCTATC+TGG | - | tig0022468:34989-35008 | Msa1400620:intron | 40.0% | |
| TCTCTCTATCTGGTATGGTA+TGG | - | tig0022468:34999-35018 | Msa1400620:intron | 40.0% | |
| CTTGTGATTCTTGCTCCAAT+TGG | - | tig0022468:35025-35044 | Msa1400620:intron | 40.0% | |
| TTTCTGTGTCTTCAAGCAAC+AGG | + | tig0022468:35624-35643 | None:intergenic | 40.0% | |
| AATGCAACCTGCATAAGACA+GGG | + | tig0022468:35718-35737 | None:intergenic | 40.0% | |
| AAATGCAACCTGCATAAGAC+AGG | + | tig0022468:35719-35738 | None:intergenic | 40.0% | |
| TGACTCCTTTATTCTCTAGC+TGG | - | tig0022468:35742-35761 | Msa1400620:intron | 40.0% | |
| TACTCAGATTGTGCTAAAGG+TGG | + | tig0022468:35784-35803 | None:intergenic | 40.0% | |
| TCCAAACAATGTCCAAACTC+TGG | + | tig0022468:36120-36139 | None:intergenic | 40.0% | |
| TGGTCCATCACAAACTACAA+AGG | + | tig0022468:36221-36240 | None:intergenic | 40.0% | |
| TCTACTGATGTCATACTTGC+TGG | - | tig0022468:36322-36341 | Msa1400620:intron | 40.0% | |
| GTTCTCTTACCTTGAGTTTG+AGG | - | tig0022468:36523-36542 | Msa1400620:intron | 40.0% | |
| ! | TGGATTTTTGTCCCAACAAG+TGG | - | tig0022468:36855-36874 | Msa1400620:intron | 40.0% |
| TAGCCCCAATTTCAAAATCC+AGG | + | tig0022468:36924-36943 | None:intergenic | 40.0% | |
| !! | TTGAGTTGAGGGCTAAGATA+AGG | - | tig0022468:37149-37168 | Msa1400620:intron | 40.0% |
| ! | TACACACTCACTCTCTGAAG+CGG | + | tig0022468:33774-33793 | None:intergenic | 45.0% |
| CGCTTTCGTTCTTTCAGCTA+CGG | - | tig0022468:33846-33865 | Msa1400620:CDS | 45.0% | |
| TTCAGCTACGGAATCTCATC+TGG | - | tig0022468:33858-33877 | Msa1400620:CDS | 45.0% | |
| ! | GTTTTCCCCTCCTGAAATGT+TGG | - | tig0022468:33997-34016 | Msa1400620:CDS | 45.0% |
| GGATGCCATGTTTCTCAACA+TGG | - | tig0022468:34265-34284 | Msa1400620:intron | 45.0% | |
| GACCGAAACACATTGAACAC+TGG | + | tig0022468:34877-34896 | None:intergenic | 45.0% | |
| GTTCAATGTGTTTCGGTCTC+AGG | - | tig0022468:34879-34898 | Msa1400620:intron | 45.0% | |
| AGGTTGCGGTGACATTGATA+TGG | - | tig0022468:34899-34918 | Msa1400620:intron | 45.0% | |
| CCAAAGAGTCACCAAACAGT+GGG | + | tig0022468:35676-35695 | None:intergenic | 45.0% | |
| AGAAAGTGAGCAAGAGAGCA+TGG | + | tig0022468:35833-35852 | None:intergenic | 45.0% | |
| ! | AGTGGTTAAGCCTTGAGTTG+TGG | - | tig0022468:36038-36057 | Msa1400620:intron | 45.0% |
| TAAGCAGAAGCCACAACTCA+AGG | + | tig0022468:36051-36070 | None:intergenic | 45.0% | |
| GAGTTGTGGCTTCTGCTTAA+TGG | - | tig0022468:36052-36071 | Msa1400620:intron | 45.0% | |
| ! | ATCAGTTTTCGGCCAGAGTT+TGG | - | tig0022468:36105-36124 | Msa1400620:intron | 45.0% |
| GCCAGAGTTTGGACATTGTT+TGG | - | tig0022468:36116-36135 | Msa1400620:intron | 45.0% | |
| ! | CTTACCTTCCTGTGATGGAA+TGG | - | tig0022468:36243-36262 | Msa1400620:intron | 45.0% |
| ! | ACTTGCTGGCTGTTCATACT+TGG | - | tig0022468:36336-36355 | Msa1400620:intron | 45.0% |
| TCTTACCTTGAGTTTGAGGG+AGG | - | tig0022468:36527-36546 | Msa1400620:intron | 45.0% | |
| ! | ACGAACATTGAAGCGCTTGA+AGG | + | tig0022468:37095-37114 | None:intergenic | 45.0% |
| ! | TGTTGATGAAGAGGGTGACT+TGG | - | tig0022468:37216-37235 | Msa1400620:intron | 45.0% |
| ! | ATGATTTGCACGACGTGATG+AGG | - | tig0022468:37257-37276 | Msa1400620:intron | 45.0% |
| CATAGATGGGGTACGAACCT+CGG | + | tig0022468:33727-33746 | None:intergenic | 50.0% | |
| ! | TGTGTTTCGGTCTCAGGTTG+CGG | - | tig0022468:34885-34904 | Msa1400620:intron | 50.0% |
| GCAGTGTTAAGCCCACTGTT+TGG | - | tig0022468:35662-35681 | Msa1400620:intron | 50.0% | |
| ! | CCCACTGTTTGGTGACTCTT+TGG | - | tig0022468:35673-35692 | Msa1400620:intron | 50.0% |
| GCCAAAGAGTCACCAAACAG+TGG | + | tig0022468:35677-35696 | None:intergenic | 50.0% | |
| ! | GAGCAAGAGAGCATGGTTGA+TGG | + | tig0022468:35826-35845 | None:intergenic | 50.0% |
| CCATCACAGGAAGGTAAGAG+TGG | + | tig0022468:36241-36260 | None:intergenic | 50.0% | |
| CCACTCTTACCTTCCTGTGA+TGG | - | tig0022468:36238-36257 | Msa1400620:intron | 50.0% | |
| ACAACCAGCCATTCCATCAC+AGG | + | tig0022468:36254-36273 | None:intergenic | 50.0% | |
| ! | GGCTGGTTGTTCACACTTTC+TGG | - | tig0022468:36264-36283 | Msa1400620:intron | 50.0% |
| AACAGCCTCCCTCAAACTCA+AGG | + | tig0022468:36535-36554 | None:intergenic | 50.0% | |
| CAAGCGCTTCAATGTTCGTG+TGG | - | tig0022468:37096-37115 | Msa1400620:intron | 50.0% | |
| GGATGTGCCCTGTCTTATGC+AGG | - | tig0022468:35708-35727 | Msa1400620:intron | 55.0% | |
| CCAGCCATTCCATCACAGGA+AGG | + | tig0022468:36250-36269 | None:intergenic | 55.0% | |
| ! | CCTTCCTGTGATGGAATGGC+TGG | - | tig0022468:36247-36266 | Msa1400620:intron | 55.0% |
| GCTGGCTGTTCATACTTGGC+TGG | - | tig0022468:36340-36359 | Msa1400620:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022468 | gene | 33720 | 37393 | 33720 | ID=Msa1400620;Name=Msa1400620 |
| tig0022468 | mRNA | 33720 | 37393 | 33720 | ID=Msa1400620-mRNA-1;Parent=Msa1400620;Name=Msa1400620-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.5|1|1|2|0|108 |
| tig0022468 | exon | 37385 | 37393 | 37385 | ID=Msa1400620-mRNA-1:exon:17780;Parent=Msa1400620-mRNA-1 |
| tig0022468 | exon | 33720 | 34037 | 33720 | ID=Msa1400620-mRNA-1:exon:17779;Parent=Msa1400620-mRNA-1 |
| tig0022468 | CDS | 37385 | 37393 | 37385 | ID=Msa1400620-mRNA-1:cds;Parent=Msa1400620-mRNA-1 |
| tig0022468 | CDS | 33720 | 34037 | 33720 | ID=Msa1400620-mRNA-1:cds;Parent=Msa1400620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
